Pregenerated sensors for AGK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029916Ensembl transcript IDs: ENSMUST00000031977.12, ENSMUST00000200715.2
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGATCCTGTGACCCTCTGGGGACAGAAGCACACACATCCCCCATGTaGTCCCACTGGTGGCTTGCAGTGCAGCCTGGGAGTGCCCGCCAC | + |
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Preference number: 1 (lower is better) Translates to: GSCDPLGTEAHTSPM*SHWWLAVQPGSARH Trigger: GTGGCGGGCACTCCCAGGCTGCACTGCAAGCCACCAGTGGGACCACATGGGGGATGTGTGTGCTTCTGTCCCCAGAGGGTCACAGGATCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| 3UTR TCA 90 bp | AGACCAACCAACCAAAGCAGAGAGCTCACAAAGGAGCAGCACCCATaGGAGAGCCCAGAAAGAGGGCGAGGCTCCCGGAGACAGCAGCTG | + |
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Preference number: 1 (lower is better) Translates to: RPTNQSRELTKEQHP*ESPERGRGSRRQQL Trigger: CAGCTGCTGTCTCCGGGAGCCTCGCCCTCTTTCTGGGCTCTCTCATGGGTGCTGCTCCTTTGTGAGCTCTCTGCTTTGGTTGGTTGGTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| 3UTR GCA 90 bp | CGCGCAGCACTTACTGAGGAACAATCTTCCCCGTCCTTAGGTGACTaGCCTACCAGGCCACAGCCTTGTTTGGGGAGAGTGAACTTTCTC | + |
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Preference number: 1 (lower is better) Translates to: RAALTEEQSSPSLGD*PTRPQPCLGRVNFL Trigger: GAGAAAGTTCACTCTCCCCAAACAAGGCTGTGGCCTGGTAGGGCAGTCACCTAAGGACGGGGAAGATTGTTCCTCAGTAAGTGCTGCGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR TCA 90 bp | GTATGTGCTCTAGGAAGCAAACAGGAGGGCTGGGGGTACTTGCCATaGAAATTCCCTTGGGATCCTGTGACCCTCTGGGGACAGAAGCAC | + |
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Preference number: 1 (lower is better) Translates to: VCALGSKQEGWGYLP*KFPWDPVTLWGQKH Trigger: GTGCTTCTGTCCCCAGAGGGTCACAGGATCCCAAGGGAATTTTCATGGCAAGTACCCCCAGCCCTCCTGTTTGCTTCCTAGAGCACATAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| 3UTR TCA 90 bp | TCTGCCATGGCTAAAGAGGGAACAACCTCACATTTGCTTTCCGGATaGGACCAACCAACCAAAGCAGAGAGCTCACAAAGGAGCAGCACC | + |
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Preference number: 1 (lower is better) Translates to: SAMAKEGTTSHLLSG*DQPTKAESSQRSST Trigger: GGTGCTGCTCCTTTGTGAGCTCTCTGCTTTGGTTGGTTGGTCTCATCCGGAAAGCAAATGTGAGGTTGTTCCCTCTTTAGCCATGGCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| 3UTR TCA 90 bp | CTCCTTTGTAAAGACTACACTGTCCTCCTGAGCCCACTGTGCTCTTaGTCTCTCAAACTCCTTTGTGATGGCAGCCTAACACGGTTATGC | + |
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Preference number: 1 (lower is better) Translates to: LLCKDYTVLLSPLCS*SLKLLCDGSLTRLC Trigger: GCATAACCGTGTTAGGCTGCCATCACAAAGGAGTTTGAGAGATCAAGAGCACAGTGGGCTCAGGAGGACAGTGTAGTCTTTACAAAGGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR TCA 90 bp | ACACAGACACAGAGCTCTCTACTGCCCTCACCAGGTCATAGTGACTaGTGTACTGGTGTACTGGGTGTTCAGGTTGCGCTATTTAAGAAC | + |
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Preference number: 1 (lower is better) Translates to: TQTQSSLLPSPGHSD*CTGVLGVQVALFKN Trigger: GTTCTTAAATAGCGCAACCTGAACACCCAGTACACCAGTACATCAGTCACTATGACCTGGTGAGGGCAGTAGAGAGCTCTGTGTCTGTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR GCA 90 bp | GCAGGGATCCACCTTGCTATAGGAGGCCATCTGTGGCTACACCTTTaGCTACCTTTAGATAAAGTATTGGACTTACAAACAAGAGCCCGC | + |
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Preference number: 1 (lower is better) Translates to: AGIHLAIGGHLWLHL*LPLDKVLDLQTRAR Trigger: GCGGGCTCTTGTTTGTAAGTCCAATACTTTATCTAAAGGTAGGCAAAGGTGTAGCCACAGATGGCCTCCTATAGCAAGGTGGATCCCTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR CCA 90 bp | TCCCAGGTGCATGCAGGGATCCACCTTGCTATAGGAGGCCATCTGTaGCTACACCTTTGCCTACCTTTAGATAAAGTATTGGACTTACAA | + |
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Preference number: 1 (lower is better) Translates to: SQVHAGIHLAIGGHL*LHLCLPLDKVLDLQ Trigger: TTGTAAGTCCAATACTTTATCTAAAGGTAGGCAAAGGTGTAGCCACAGATGGCCTCCTATAGCAAGGTGGATCCCTGCATGCACCTGGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR TCA 90 bp | CGGTACTGTGAGACTTTACTTCAAAGAGTAAAGTGGAAGAGCAACTaGAGACCAAGACCAACCTCAGCCTCTATGTGCACAAGCACACAC | + |
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Preference number: 1 (lower is better) Translates to: RYCETLLQRVKWKSN*RPRPTSASMCTSTH Trigger: GTGTGTGCTTGTGCACATAGAGGCTGAGGTTGGTCTTGGTCTTCAGTTGCTCTTCCACTTTACTCTTTGAAGTAAAGTCTCACAGTACCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR GCA 90 bp | TTTACAATACGTCTGCCATGGCTAAAGAGGGAACAACCTCACATTTaGTTTCCGGATGAGACCAACCAACCAAAGCAGAGAGCTCACAAA | + |
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Preference number: 1 (lower is better) Translates to: FTIRLPWLKREQPHI*FPDETNQPKQRAHK Trigger: TTTGTGAGCTCTCTGCTTTGGTTGGTTGGTCTCATCCGGAAAGCAAATGTGAGGTTGTTCCCTCTTTAGCCATGGCAGACGTATTGTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| 3UTR CCA 90 bp | CTCTACTGCCCTCACCAGGTCATAGTGACTGATGTACTGGTGTACTaGGTGTTCAGGTTGCGCTATTTAAGAACTTGTATCATTTATTAC | + |
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Preference number: 1 (lower is better) Translates to: LYCPHQVIVTDVLVY*VFRLRYLRTCIIYY Trigger: GTAATAAATGATACAAGTTCTTAAATAGCGCAACCTGAACACCCAGTACACCAGTACATCAGTCACTATGACCTGGTGAGGGCAGTAGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR CCA 90 bp | AACTACCAAGAAATTAAACCACTCAAAGTAGAGAGCTTTGTATTTTaGGGATGGACTCTGACAATTGAGAGAGTTAGTTTTACCTGCTGC | + |
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Preference number: 1 (lower is better) Translates to: NYQEIKPLKVESFVF*GWTLTIERVSFTCC Trigger: GCAGCAGGTAAAACTAACTCTCTCAATTGTCAGAGTCCATCCCCAAAATACAAAGCTCTCTACTTTGAGTGGTTTAATTTCTTGGTAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR-3UTR GCA 90 bp | TGCTTTCCGGATGAGACCAACCAACCAAAGCAGAGAGCTCACAAAGGAGCAGCAGTCCCACTGGTGGCTTaGAGTGCAGCCTGGGAGTGC | + |
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Preference number: 2 (lower is better) Translates to: CFPDETNQPKQRAHKGAAVPLVA*SAAWEC Trigger: GCACTCCCAGGCTGCACTGCAAGCCACCAGTGGGAC...TGCTGCTCCTTTGTGAGCTCTCTGCTTTGGTTGGTTGGTCTCATCCGGAAAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| 3UTR-3UTR TCA 90 bp | AGCTCGGCCTCTGAAGACAGGGACAAGGATCTCCAAAGCAAGCTGGTCCGGGACAGCCCACTGTGCTCTTaGTCTCTCAAACTCCTTTGT | + |
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Preference number: 2 (lower is better) Translates to: SSASEDRDKDLQSKLVRDSPLCS*SLKLLC Trigger: ACAAAGGAGTTTGAGAGATCAAGAGCACAGTGGGCT...GTCCCGGACCAGCTTGCTTTGGAGATCCTTGTCCCTGTCTTCAGAGGCCGAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR-3UTR TCA 90 bp | AGGTTGAGTTACAAAGTCAACCTGGGGGTAGGTCCCAGGTCAGTTAGTTTTCAATCCCTTGGGATCCTGTaGCCCTCTGGGGACAGAAGC | + |
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Preference number: 2 (lower is better) Translates to: RLSYKVNLGVGPRSVSFQSLGIL*PSGDRS Trigger: GCTTCTGTCCCCAGAGGGTCACAGGATCCCAAGGGA...TTGAAAACTAACTGACCTGGGACCTACCCCCAGGTTGACTTTGTAACTCAACCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| 3UTR-3UTR TCA 90 bp | AAGCAAATGTGTGTGCGAGCACGCACACAGGCACGTACACACACACACACACACCTTGTTTGGGGAGAGTaGACTTTCTCTAAGGCCAGT | + |
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Preference number: 2 (lower is better) Translates to: KQMCVRARTQARTHTHTHLVWGE*TFSKAS Trigger: ACTGGCCTTAGAGAAAGTTCACTCTCCCCAAACAAG...GTGTGTGTGTGTGTGTGTACGTGCCTGTGTGCGTGCTCGCACACACATTTGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR-3UTR TCA 90 bp | TGGGGATGGACTCTGACAATTGAGAGAGTTAGTTTTACCTGCTGCAAAGTATCATTCCCCGTCCTTAGGTaGCTGCCCTACCAGGCCACA | + |
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Preference number: 2 (lower is better) Translates to: WGWTLTIERVSFTCCKVSFPVLR*LPYQAT Trigger: TGTGGCCTGGTAGGGCAGTCACCTAAGGACGGGGAA...TGATACTTTGCAGCAGGTAAAACTAACTCTCTCAATTGTCAGAGTCCATCCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR-3UTR TCA 90 bp | ATACGTCTGCCATGGCTAAAGAGGGAACAACCTCACATTTGCTTTCCGGATGAGTGGGGGTACTTGCCATaGAAATTCCCTTGGGATCCT | + |
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Preference number: 2 (lower is better) Translates to: IRLPWLKREQPHICFPDEWGYLP*KFPWDP Trigger: AGGATCCCAAGGGAATTTTCATGGCAAGTACCCCCA...CTCATCCGGAAAGCAAATGTGAGGTTGTTCCCTCTTTAGCCATGGCAGACGTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| 3UTR-3UTR TCA 90 bp | TCAGAGAACCGAAACAGGAACTTGGTCTACAGATTCCACTCTCCACTGTGGGACCCACAAACAAGTGCATaGCATGGTATGTGCTCTAGG | + |
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Preference number: 2 (lower is better) Translates to: SENRNRNLVYRFHSPLWDPQTSA*HGMCSR Trigger: CCTAGAGCACATACCATGTCATGCACTTGTTTGTGG...GTCCCACAGTGGAGAGTGGAATCTGTAGACCAAGTTCCTGTTTCGGTTCTCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| 3UTR-3UTR TCA 90 bp | TCCACAACCTTTCCTTGTCTTCACAGTACCCTGCATTTCAGGGTGATACAACGGGGACTGCTCTCAAGCTaGTATAAATCCTTGGTGTTT | + |
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Preference number: 2 (lower is better) Translates to: STTFPCLHSTLHFRVIQRGLLSS*YKSLVF Trigger: AAACACCAAGGATTTATATCAGCTTGAGAGCAGTCC...CCGTTGTATCACCCTGAAATGCAGGGTACTGTGAAGACAAGGAAAGGTTGTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR-3UTR GCA 90 bp | TACGACTTACAGAGGAGGCCAATACACAAAGTCATGCTCAAATTTCCCCAAAAGGCTTCTGCTTCGTTTTaGTTCAGACAACAGTGCCTG | + |
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Preference number: 2 (lower is better) Translates to: YDLQRRPIHKVMLKFPQKASASF*FRQQCL Trigger: CAGGCACTGTTGTCTGAAGCAAAACGAAGCAGAAGC...CTTTTGGGGAAATTTGAGCATGACTTTGTGTATTGGCCTCCTCTGTAAGTCGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR-3UTR TCA 90 bp | ATTAAACCACTCAAAGTAGAGAGCTTTGTATTTTGGGGATGGACTCTGACAATTACTACACTGTCCTCCTaGGCCCACTGTGCTCTTGAT | + |
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Preference number: 2 (lower is better) Translates to: IKPLKVESFVFWGWTLTITTLSS*AHCALD Trigger: ATCAAGAGCACAGTGGGCTCAGGAGGACAGTGTAGT...AATTGTCAGAGTCCATCCCCAAAATACAAAGCTCTCTACTTTGAGTGGTTTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR-3UTR TCA 90 bp | AAAACTGGGTTCTGCTTAGAAGGCAAGAGCAGAGAACACATGAATACATTAAAAGGAGTGATGTCTCAGTaGTGGCTAAGGCTGGCTGAA | + |
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Preference number: 2 (lower is better) Translates to: KTGFCLEGKSREHMNTLKGVMSQ*WLRLAE Trigger: TTCAGCCAGCCTTAGCCATCACTGAGACATCACTCC...TTTTAATGTATTCATGTGTTCTCTGCTCTTGCCTTCTAAGCAGAACCCAGTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR-3UTR GCA 90 bp | TGGGGATGGACTCTGACAATTGAGAGAGTTAGTTTTACCTGCTGCAAAGTATCAGTGAAAACTGGGTTCTaGTTAGAAGGCAAGAGCAGA | + |
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Preference number: 2 (lower is better) Translates to: WGWTLTIERVSFTCCKVSVKTGF*LEGKSR Trigger: TCTGCTCTTGCCTTCTAAGCAGAACCCAGTTTTCAC...TGATACTTTGCAGCAGGTAAAACTAACTCTCTCAATTGTCAGAGTCCATCCCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR CAA 90 bp | AAAATGGTGATCTGTGTACTTAAAGACTCTAGAGGAAGTCTCACCTaGACAACAGTCACATCCATGCCAGACAGGTGTAAAATTGGAGCA | + |
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Preference number: 2 (lower is better) Translates to: KMVICVLKDSRGSLT*TTVTSMPDRCKIGA Trigger: TGCTCCAATTTTACACCTGTCTGGCATGGATGTGACTGTTGTCAAGGTGAGACTTCCTCTAGAGTCTTTAAGTACACAGATCACCATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR CAA 90 bp | GGAGGCCATCTGTGGCTACACCTTTGCCTACCTTTAGATAAAGTATaGGACTTACAAACAAGAGCCCGCTTTAGTTTTAAAAATGTAAGC | + |
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Preference number: 2 (lower is better) Translates to: GGHLWLHLCLPLDKV*DLQTRARFSFKNVS Trigger: GCTTACATTTTTAAAACTAAAGCGGGCTCTTGTTTGTAAGTCCAATACTTTATCTAAAGGTAGGCAAAGGTGTAGCCACAGATGGCCTCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR-3UTR TCA 90 bp | ATTAAACCACTCAAAGTAGAGAGCTTTGTATTTTGGGGATGGACTCTGACAATTAAGATCCTCCAGAACTaGCTTTGGGAGCTTCTGCTT | + |
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Preference number: 2 (lower is better) Translates to: IKPLKVESFVFWGWTLTIKILQN*LWELLL Trigger: AAGCAGAAGCTCCCAAAGTCAGTTCTGGAGGATCTT...AATTGTCAGAGTCCATCCCCAAAATACAAAGCTCTCTACTTTGAGTGGTTTAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR-3UTR TCA 90 bp | ATTAAACCACTCAAAGTAGAGAGCTTTGTATTTTGGGGATGGACTCTGACAATTGTTGAAATAAAAAGCTaGCCATGTCAGGAGAAAACA | + |
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Preference number: 2 (lower is better) Translates to: IKPLKVESFVFWGWTLTIVEIKS*PCQEKT Trigger: TGTTTTCTCCTGACATGGTCAGCTTTTTATTTCAAC...AATTGTCAGAGTCCATCCCCAAAATACAAAGCTCTCTACTTTGAGTGGTTTAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR GCA 72 bp | AGCACACACATCCCCCATGTGGTCCCACTGGTGGCTTaGAGTGCAGCCTGGGAGTGCCCGCCACGCTGTCGC | + |
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Preference number: 3 (lower is better) Translates to: STHIPHVVPLVA*SAAWECPPRCR Trigger: GCGACAGCGTGGCGGGCACTCCCAGGCTGCACTGCAAGCCACCAGTGGGACCACATGGGGGATGTGTGTGCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| 3UTR GCA 72 bp | GCGAGGCTCCCGGAGACAGCAGCTGCCTCCCCGGGGTaGCCCAGGACGGTCAGAGAACCGAAACAGGAACTT | + |
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Preference number: 3 (lower is better) Translates to: ARLPETAAASPG*PRTVREPKQEL Trigger: AAGTTCCTGTTTCGGTTCTCTGACCGTCCTGGGGCACCCCGGGGAGGCAGCTGCTGTCTCCGGGAGCCTCGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| 3UTR TCA 72 bp | CTAGGAAGCAAACAGGAGGGCTGGGGGTACTTGCCATaGAAATTCCCTTGGGATCCTGTGACCCTCTGGGGA | + |
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Preference number: 3 (lower is better) Translates to: LGSKQEGWGYLP*KFPWDPVTLWG Trigger: TCCCCAGAGGGTCACAGGATCCCAAGGGAATTTTCATGGCAAGTACCCCCAGCCCTCCTGTTTGCTTCCTAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| 3UTR GCA 72 bp | CTTACTGAGGAACAATCTTCCCCGTCCTTAGGTGACTaGCCTACCAGGCCACAGCCTTGTTTGGGGAGAGTG | + |
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Preference number: 3 (lower is better) Translates to: LTEEQSSPSLGD*PTRPQPCLGRV Trigger: CACTCTCCCCAAACAAGGCTGTGGCCTGGTAGGGCAGTCACCTAAGGACGGGGAAGATTGTTCCTCAGTAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR CCA 72 bp | CCTCTGAAGACAGGGACAAGGATCTCCAAAGCAAGCTaGTCCGGGACAGCAGCCATGATATGGCAAGGTCTG | + |
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Preference number: 3 (lower is better) Translates to: PLKTGTRISKAS*SGTAAMIWQGL Trigger: CAGACCTTGCCATATCATGGCTGCTGTCCCGGACCAGCTTGCTTTGGAGATCCTTGTCCCTGTCTTCAGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR TCA 72 bp | ACTGCCCTACCAGGCCACAGCCTTGTTTGGGGAGAGTaGACTTTCTCTAAGGCCAGTAGAAGGTTCCCTCCT | + |
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Preference number: 3 (lower is better) Translates to: TALPGHSLVWGE*TFSKASRRFPP Trigger: AGGAGGGAACCTTCTACTGGCCTTAGAGAAAGTTCACTCTCCCCAAACAAGGCTGTGGCCTGGTAGGGCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR CCA 72 bp | GTGCCCCAGGACGGTCAGAGAACCGAAACAGGAACTTaGTCTACAGATTCCACTCTCCACTGTGGGACAATC | + |
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Preference number: 3 (lower is better) Translates to: VPQDGQRTETGT*STDSTLHCGTI Trigger: GATTGTCCCACAGTGGAGAGTGGAATCTGTAGACCAAGTTCCTGTTTCGGTTCTCTGACCGTCCTGGGGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| 3UTR-3UTR CAA 90 bp | AAGCAAATGTGTGTGCGAGCACGCACACAGGCACGTACACACACACACACACACTACCAGGCCACAGCCTaGTTTGGGGAGAGTGAACTT | + |
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Preference number: 3 (lower is better) Translates to: KQMCVRARTQARTHTHTHYQATA*FGESEL Trigger: AAGTTCACTCTCCCCAAACAAGGCTGTGGCCTGGTA...GTGTGTGTGTGTGTGTGTACGTGCCTGTGTGCGTGCTCGCACACACATTTGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR-3UTR CAA 90 bp | AAGCAAATGTGTGTGCGAGCACGCACACAGGCACGTACACACACACACACACACCCTCCAGAACTGACTTaGGGAGCTTCTGCTTCGTTT | + |
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Preference number: 3 (lower is better) Translates to: KQMCVRARTQARTHTHTHPPELT*GASASF Trigger: AAACGAAGCAGAAGCTCCCAAAGTCAGTTCTGGAGG...GTGTGTGTGTGTGTGTGTACGTGCCTGTGTGCGTGCTCGCACACACATTTGCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR TCA 72 bp | CCTGCTTGTGGCTTTTTCCCCCAGACAGGGCAATTCTaGGTTCCTCCACAACCTTTCCTTGTCTTCACAGTA | + |
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Preference number: 3 (lower is better) Translates to: PACGFFPQTGQF*VPPQPFLVFTV Trigger: TACTGTGAAGACAAGGAAAGGTTGTGGAGGAACTCAGAATTGCCCTGTCTGGGGGAAAAAGCCACAAGCAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR GCA 72 bp | CGTCTGCCATGGCTAAAGAGGGAACAACCTCACATTTaGTTTCCGGATGAGACCAACCAACCAAAGCAGAGA | + |
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Preference number: 3 (lower is better) Translates to: RLPWLKREQPHI*FPDETNQPKQR Trigger: TCTCTGCTTTGGTTGGTTGGTCTCATCCGGAAAGCAAATGTGAGGTTGTTCCCTCTTTAGCCATGGCAGACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| 3UTR TCA 72 bp | GCTAAAGAGGGAACAACCTCACATTTGCTTTCCGGATaGGACCAACCAACCAAAGCAGAGAGCTCACAAAGG | + |
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Preference number: 3 (lower is better) Translates to: AKEGTTSHLLSG*DQPTKAESSQR Trigger: CCTTTGTGAGCTCTCTGCTTTGGTTGGTTGGTCTCATCCGGAAAGCAAATGTGAGGTTGTTCCCTCTTTAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| 3UTR TCA 72 bp | AAAGACTACACTGTCCTCCTGAGCCCACTGTGCTCTTaGTCTCTCAAACTCCTTTGTGATGGCAGCCTAACA | + |
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Preference number: 3 (lower is better) Translates to: KDYTVLLSPLCS*SLKLLCDGSLT Trigger: TGTTAGGCTGCCATCACAAAGGAGTTTGAGAGATCAAGAGCACAGTGGGCTCAGGAGGACAGTGTAGTCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR GCA 72 bp | CCCAAAAGATCCTCCAGAACTGACTTTGGGAGCTTCTaGTTCGTTTTGCTTCAGACAACAGTGCCTGAACAC | + |
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Preference number: 3 (lower is better) Translates to: PKRSSRTDFGSF*FVLLQTTVPEH Trigger: GTGTTCAGGCACTGTTGTCTGAAGCAAAACGAAGCAGAAGCTCCCAAAGTCAGTTCTGGAGGATCTTTTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR CCA 72 bp | CATGCAGGGATCCACCTTGCTATAGGAGGCCATCTGTaGCTACACCTTTGCCTACCTTTAGATAAAGTATTG | + |
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Preference number: 3 (lower is better) Translates to: HAGIHLAIGGHL*LHLCLPLDKVL Trigger: CAATACTTTATCTAAAGGTAGGCAAAGGTGTAGCCACAGATGGCCTCCTATAGCAAGGTGGATCCCTGCATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR-3UTR CAA 90 bp | AGGCTAAGTAACTCAGAATATTCTAGAAGCAGAAGCAAATGTGTGTGCGAGCACGTCCACCACCTGCCTTaGTGGAGATTTTGTCCTTTG | + |
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Preference number: 3 (lower is better) Translates to: RLSNSEYSRSRSKCVCEHVHHLP*WRFCPL Trigger: CAAAGGACAAAATCTCCACAAAGGCAGGTGGTGGAC...GTGCTCGCACACACATTTGCTTCTGCTTCTAGAATATTCTGAGTTACTTAGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR-3UTR CAA 90 bp | TACGACTTACAGAGGAGGCCAATACACAAAGTCATGCTCAAATTTCCCCAAAAGCTCCACAACCTTTCCTaGTCTTCACAGTACCCTGCA | + |
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Preference number: 3 (lower is better) Translates to: YDLQRRPIHKVMLKFPQKLHNLS*SSQYPA Trigger: TGCAGGGTACTGTGAAGACAAGGAAAGGTTGTGGAG...CTTTTGGGGAAATTTGAGCATGACTTTGTGTATTGGCCTCCTCTGTAAGTCGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR GCA 72 bp | GGTACGACTTACAGAGGAGGCCAATACACAAAGTCATaGTCAAATTTCCCCAAAAGATCCTCCAGAACTGAC | + |
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Preference number: 3 (lower is better) Translates to: GTTYRGGQYTKS*SNFPKRSSRTD Trigger: GTCAGTTCTGGAGGATCTTTTGGGGAAATTTGAGCATGACTTTGTGTATTGGCCTCCTCTGTAAGTCGTACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR TCA 72 bp | GAGACTTTACTTCAAAGAGTAAAGTGGAAGAGCAACTaGAGACCAAGACCAACCTCAGCCTCTATGTGCACA | + |
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Preference number: 3 (lower is better) Translates to: ETLLQRVKWKSN*RPRPTSASMCT Trigger: TGTGCACATAGAGGCTGAGGTTGGTCTTGGTCTTCAGTTGCTCTTCCACTTTACTCTTTGAAGTAAAGTCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR GCA 72 bp | TGGACTCTGACAATTGAGAGAGTTAGTTTTACCTGCTaGAAAGTATCAAGACCTCCGAACACCCATCTGAGT | + |
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Preference number: 3 (lower is better) Translates to: WTLTIERVSFTC*KVSRPPNTHLS Trigger: ACTCAGATGGGTGTTCGGAGGTCTTGATACTTTGCAGCAGGTAAAACTAACTCTCTCAATTGTCAGAGTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR TCA 72 bp | CCTTTCCTTGTCTTCACAGTACCCTGCATTTCAGGGTaGTACAACGGGTACCATCAACTAAGCAACAAATAT | + |
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Preference number: 3 (lower is better) Translates to: PFLVFTVPCISG*YNGYHQLSNKY Trigger: ATATTTGTTGCTTAGTTGATGGTACCCGTTGTATCACCCTGAAATGCAGGGTACTGTGAAGACAAGGAAAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR GCA 72 bp | CACCTTGCTATAGGAGGCCATCTGTGGCTACACCTTTaGCTACCTTTAGATAAAGTATTGGACTTACAAACA | + |
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Preference number: 3 (lower is better) Translates to: HLAIGGHLWLHL*LPLDKVLDLQT Trigger: TGTTTGTAAGTCCAATACTTTATCTAAAGGTAGGCAAAGGTGTAGCCACAGATGGCCTCCTATAGCAAGGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR GCA 72 bp | CTTAAAATCCAGCCTCAAGTACTCATTATCGATGTGTaGGACTTCAGTCTTATAGTGTCCAGCCTGGTATAT | + |
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Preference number: 3 (lower is better) Translates to: LKIQPQVLIIDV*DFSLIVSSLVY Trigger: ATATACCAGGCTGGACACTATAAGACTGAAGTCGCACACATCGATAATGAGTACTTGAGGCTGGATTTTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR GCA 72 bp | TTGATTTTCCTCTTATCTTCAGTGAAAACTGGGTTCTaGTTAGAAGGCAAGAGCAGAGAACACATGAATACA | + |
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Preference number: 3 (lower is better) Translates to: LIFLLSSVKTGF*LEGKSREHMNT Trigger: TGTATTCATGTGTTCTCTGCTCTTGCCTTCTAAGCAGAACCCAGTTTTCACTGAAGATAAGAGGAAAATCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR-3UTR CAA 90 bp | TCAGCCAAAACCAAACAACAACCAAGTACTTATTGGAAGCCAGAACTTATAATAGCCTTTGTGGAGATTTaGTCCTTTGCCTTTAGAAAA | + |
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Preference number: 3 (lower is better) Translates to: SAKTKQQPSTYWKPELIIAFVEI*SFAFRK Trigger: TTTTCTAAAGGCAAAGGACAAAATCTCCACAAAGGC...TATTATAAGTTCTGGCTTCCAATAAGTACTTGGTTGTTGTTTGGTTTTGGCTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR CCA 72 bp | GAAATTAAACCACTCAAAGTAGAGAGCTTTGTATTTTaGGGATGGACTCTGACAATTGAGAGAGTTAGTTTT | + |
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Preference number: 3 (lower is better) Translates to: EIKPLKVESFVF*GWTLTIERVSF Trigger: AAAACTAACTCTCTCAATTGTCAGAGTCCATCCCCAAAATACAAAGCTCTCTACTTTGAGTGGTTTAATTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| CDS-3UTR CCA 90 bp | GAACGTTCTAGACCCAGCCTGAGACAACCACTGTGTAAGAGGGATCAACTACCTGTACAGTGGCTGGCTTaGAGGCACTCGGTGCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: ERSRPSLRQPLCKRDQLPVQWLA*RHSVPA Trigger: AGCTGGCACCGAGTGCCTCCAAGCCAGCCACTGTAC...AGGTAGTTGATCCCTCTTACACAGTGGTTGTCTCAGGCTGGGTCTAGAACGTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| 3UTR CAA 72 bp | GGTGCCCCAGGACGGTCAGAGAACCGAAACAGGAACTaGGTCTACAGATTCCACTCTCCACTGTGGGACAAT | + |
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Preference number: 4 (lower is better) Translates to: GAPGRSENRNRN*VYRFHSPLWDN Trigger: ATTGTCCCACAGTGGAGAGTGGAATCTGTAGACCAAGTTCCTGTTTCGGTTCTCTGACCGTCCTGGGGCACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| CDS-3UTR GCA 90 bp | TCAGAGAACCGAAACAGGAACTTGGTCTACAGATTCCACTCTCCACTGTGGGACCCAGTAACAACCTCCTaGAGTGTGCCGTCTCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: SENRNRNLVYRFHSPLWDPVTTS*SVPSPP Trigger: TGGAGGAGACGGCACACTGCAGGAGGTTGTTACTGG...GTCCCACAGTGGAGAGTGGAATCTGTAGACCAAGTTCCTGTTTCGGTTCTCTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| CDS-3UTR CCA 90 bp | GACGGTCAGAGAACCGAAACAGGAACTTGGTCTACAGATTCCACTCTCCACTGTGTCCCGTGTAAGAGATaGAGGCTTGATGAGTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: DGQRTETGTWSTDSTLHCVPCKR*RLDESE Trigger: CTCAGACTCATCAAGCCTCCATCTCTTACACGGGAC...ACAGTGGAGAGTGGAATCTGTAGACCAAGTTCCTGTTTCGGTTCTCTGACCGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| CDS-3UTR CCA 90 bp | ACTGACCACAAACAAGTGCATGACATGGTATGTGCTCTAGGAAGCAAACAGGAGAGAACCAGAGTACAGTaGCTGGCTTGGAGGCACTCG | + |
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Preference number: 4 (lower is better) Translates to: TDHKQVHDMVCALGSKQERTRVQ*LAWRHS Trigger: CGAGTGCCTCCAAGCCAGCCACTGTACTCTGGTTCT...CTCCTGTTTGCTTCCTAGAGCACATACCATGTCATGCACTTGTTTGTGGTCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| CDS-3UTR TCA 90 bp | AGGTTGAGTTACAAAGTCAACCTGGGGGTAGGTCCCAGGTCAGTTAGTTTTCAATGCAAGCTGCGGGATTaGGAAAGACGGTGGCTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: RLSYKVNLGVGPRSVSFQCKLRD*ERRWLS Trigger: AGAAAGCCACCGTCTTTCTCAATCCCGCAGCTTGCA...TTGAAAACTAACTGACCTGGGACCTACCCCCAGGTTGACTTTGTAACTCAACCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| CDS-3UTR TCA 90 bp | GACGGTCAGAGAACCGAAACAGGAACTTGGTCTACAGATTCCACTCTCCACTGTCTCCTCCAGCAACAATaGTCACATCAGTGCTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: DGQRTETGTWSTDSTLHCLLQQQ*SHQCFP Trigger: TGGAAAGCACTGATGTGATCATTGTTGCTGGAGGAG...ACAGTGGAGAGTGGAATCTGTAGACCAAGTTCCTGTTTCGGTTCTCTGACCGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| CDS-3UTR GCA 90 bp | CTAAAGAGGGAACAACCTCACATTTGCTTTCCGGATGAGACCAACCAACCAAAGGTGCTCGGCAGCATTTaGTCTCTCTTCCTCGGATCA | + |
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Preference number: 4 (lower is better) Translates to: LKREQPHICFPDETNQPKVLGSI*SLFLGS Trigger: TGATCCGAGGAAGAGAGAGCAAATGCTGCCGAGCAC...CTTTGGTTGGTTGGTCTCATCCGGAAAGCAAATGTGAGGTTGTTCCCTCTTTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| CDS-3UTR GCA 90 bp | TGCTTTCCGGATGAGACCAACCAACCAAAGCAGAGAGCTCACAAAGGAGCAGCACAACAGTCACATCCATaGCAGACAGGTGTAAAATTG | + |
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Preference number: 4 (lower is better) Translates to: CFPDETNQPKQRAHKGAAQQSHP*QTGVKL Trigger: CAATTTTACACCTGTCTGGCATGGATGTGACTGTTG...TGCTGCTCCTTTGTGAGCTCTCTGCTTTGGTTGGTTGGTCTCATCCGGAAAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| CDS-3UTR TCA 90 bp | AGGCTAAGTAACTCAGAATATTCTAGAAGCAGAAGCAAATGTGTGTGCGAGCACTGCAAGCTGCGGGATTaGGAAAGACGGTGGCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: RLSNSEYSRSRSKCVCEHCKLRD*ERRWLS Trigger: AGAAAGCCACCGTCTTTCTCAATCCCGCAGCTTGCA...GTGCTCGCACACACATTTGCTTCTGCTTCTAGAATATTCTGAGTTACTTAGCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| CDS-3UTR GCA 90 bp | ACTGACCACAAACAAGTGCATGACATGGTATGTGCTCTAGGAAGCAAACAGGAGCCGGAGGCCAGTCATTaGATACACAGGTTGTTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: TDHKQVHDMVCALGSKQEPEASH*IHRLFF Trigger: AAAGAACAACCTGTGTATGCAATGACTGGCCTCCGG...CTCCTGTTTGCTTCCTAGAGCACATACCATGTCATGCACTTGTTTGTGGTCAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| 3UTR CAA 72 bp | AGACAGGGCAATTCTGAGTTCCTCCACAACCTTTCCTaGTCTTCACAGTACCCTGCATTTCAGGGTGATACA | + |
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Preference number: 4 (lower is better) Translates to: RQGNSEFLHNLS*SSQYPAFQGDT Trigger: TGTATCACCCTGAAATGCAGGGTACTGTGAAGACAAGGAAAGGTTGTGGAGGAACTCAGAATTGCCCTGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| 3UTR CAA 72 bp | ATCTGTGTACTTAAAGACTCTAGAGGAAGTCTCACCTaGACAACAGTCACATCCATGCCAGACAGGTGTAAA | + |
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Preference number: 4 (lower is better) Translates to: ICVLKDSRGSLT*TTVTSMPDRCK Trigger: TTTACACCTGTCTGGCATGGATGTGACTGTTGTCAAGGTGAGACTTCCTCTAGAGTCTTTAAGTACACAGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200715.2 |
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| CDS GCA 90 bp | CCTCAGGAAGAACCAGAGTACAGTGGCTGGCTTGGAGGCACTCGGTaGCAGCTGCACGCAGGCCAGGGTCTCTCACCTTCTTACTTCCTA | + |
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Preference number: 5 (lower is better) Translates to: PQEEPEYSGWLGGTR*QLHAGQGLSPSYFL Trigger: TAGGAAGTAAGAAGGTGAGAGACCCTGGCCTGCGTGCAGCTGGCACCGAGTGCCTCCAAGCCAGCCACTGTACTCTGGTTCTTCCTGAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| CDS-3UTR CAA 90 bp | TCACAAAACTCCAGCCCTTCCCAACTCAGGGAGTACAAGAACGTTCTAGACCCAAGTACAGTGGCTGGCTaGGAGGCACTCGGTGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: SQNSSPSQLREYKNVLDPSTVAG*EALGAS Trigger: GCTGGCACCGAGTGCCTCCAAGCCAGCCACTGTACT...TGGGTCTAGAACGTTCTTGTACTCCCTGAGTTGGGAAGGGCTGGAGTTTTGTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| CDS GCA 90 bp | AAGAACCAGAGTACAGTGGCTGGCTTGGAGGCACTCGGTGCCAGCTaGACGCAGGCCAGGGTCTCTCACCTTCTTACTTCCTATGATTAT | + |
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Preference number: 5 (lower is better) Translates to: KNQSTVAGLEALGAS*TQARVSHLLTSYDY Trigger: ATAATCATAGGAAGTAAGAAGGTGAGAGACCCTGGCCTGCGTGCAGCTGGCACCGAGTGCCTCCAAGCCAGCCACTGTACTCTGGTTCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| CDS-3UTR CAA 90 bp | GCAGCACCCATGAGAGAGCCCAGAAAGAGGGCGAGGCTCCCGGAGACAGCAGCTATTATGAAATCTCCTTaGCTGACAGTGTCAGGTTCA | + |
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Preference number: 5 (lower is better) Translates to: AAPMREPRKRARLPETAAIMKSP*LTVSGS Trigger: TGAACCTGACACTGTCAGCAAAGGAGATTTCATAAT...AGCTGCTGTCTCCGGGAGCCTCGCCCTCTTTCTGGGCTCTCTCATGGGTGCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| CDS-3UTR CAA 90 bp | GACGGTCAGAGAACCGAAACAGGAACTTGGTCTACAGATTCCACTCTCCACTGTACCGGAGGCCAGTCATaGCATACACAGGTTGTTCTT | + |
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Preference number: 5 (lower is better) Translates to: DGQRTETGTWSTDSTLHCTGGQS*HTQVVL Trigger: AAGAACAACCTGTGTATGCAATGACTGGCCTCCGGT...ACAGTGGAGAGTGGAATCTGTAGACCAAGTTCCTGTTTCGGTTCTCTGACCGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| CDS-3UTR CAA 90 bp | AGGTTGAGTTACAAAGTCAACCTGGGGGTAGGTCCCAGGTCAGTTAGTTTTCAAGTAAGAGATGGAGGCTaGATGAGTCTGAGGCCATTC | + |
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Preference number: 5 (lower is better) Translates to: RLSYKVNLGVGPRSVSFQVRDGG*MSLRPF Trigger: GAATGGCCTCAGACTCATCAAGCCTCCATCTCTTAC...TTGAAAACTAACTGACCTGGGACCTACCCCCAGGTTGACTTTGTAACTCAACCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| CDS-3UTR CAA 90 bp | ATTCCACTCTCCACTGTGGGACAATCACAAAACTCCAGCCCTTCCCAACTCAGGTTCATAAAATCCTCTTaGCTCATCAGGTCAAGTTGG | + |
|
Preference number: 5 (lower is better) Translates to: IPLSTVGQSQNSSPSQLRFIKSS*LIRSSW Trigger: CCAACTTGACCTGATGAGCAAAGAGGATTTTATGAA...CCTGAGTTGGGAAGGGCTGGAGTTTTGTGATTGTCCCACAGTGGAGAGTGGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| CDS GCA 72 bp | GAACCAGAGTACAGTGGCTGGCTTGGAGGCACTCGGTaGCAGCTGCACGCAGGCCAGGGTCTCTCACCTTCT | + |
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Preference number: 6 (lower is better) Translates to: EPEYSGWLGGTR*QLHAGQGLSPS Trigger: AGAAGGTGAGAGACCCTGGCCTGCGTGCAGCTGGCACCGAGTGCCTCCAAGCCAGCCACTGTACTCTGGTTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| CDS CCA 72 bp | CCTCAGTTCCCTCAGGAAGAACCAGAGTACAGTGGCTaGCTTGGAGGCACTCGGTGCCAGCTGCACGCAGGC | + |
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Preference number: 6 (lower is better) Translates to: PQFPQEEPEYSG*LGGTRCQLHAG Trigger: GCCTGCGTGCAGCTGGCACCGAGTGCCTCCAAGCCAGCCACTGTACTCTGGTTCTTCCTGAGGGAACTGAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| CDS CAA 72 bp | AGTTCCCTCAGGAAGAACCAGAGTACAGTGGCTGGCTaGGAGGCACTCGGTGCCAGCTGCACGCAGGCCAGG | + |
|
Preference number: 6 (lower is better) Translates to: SSLRKNQSTVAG*EALGASCTQAR Trigger: CCTGGCCTGCGTGCAGCTGGCACCGAGTGCCTCCAAGCCAGCCACTGTACTCTGGTTCTTCCTGAGGGAACT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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| CDS GCA 72 bp | AGTACAGTGGCTGGCTTGGAGGCACTCGGTGCCAGCTaGACGCAGGCCAGGGTCTCTCACCTTCTTACTTCC | + |
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Preference number: 6 (lower is better) Translates to: STVAGLEALGAS*TQARVSHLLTS Trigger: GGAAGTAAGAAGGTGAGAGACCCTGGCCTGCGTGCAGCTGGCACCGAGTGCCTCCAAGCCAGCCACTGTACT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031977.12 |
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