Pregenerated sensors for AGGF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021681Ensembl transcript IDs: ENSMUST00000022189.9
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTTATGTGCGCTGCTCACATGGTCAGCTGCTCTCCACAGGGTGAGTaGCAGGCCACAACAACAAAGGTCTGGCAGCTCTCCTGTGCCTGT | + |
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Preference number: 1 (lower is better) Translates to: VMCAAHMVSCSPQGE*QATTTKVWQLSCAC Trigger: ACAGGCACAGGAGAGCTGCCAGACCTTTGTTGTTGTGGCCTGTCACTCACCCTGTGGAGAGCAGCTGACCATGTGAGCAGCGCACATAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| 3UTR TCA 90 bp | AGTGGTTATGTGCGCTGCTCACATGGTCAGCTGCTCTCCACAGGGTaGGTGACAGGCCACAACAACAAAGGTCTGGCAGCTCTCCTGTGC | + |
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Preference number: 1 (lower is better) Translates to: SGYVRCSHGQLLSTG*VTGHNNKGLAALLC Trigger: GCACAGGAGAGCTGCCAGACCTTTGTTGTTGTGGCCTGTCACTCACCCTGTGGAGAGCAGCTGACCATGTGAGCAGCGCACATAACCACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| 3UTR GCA 90 bp | TCTGGCAGCTCTCCTGTGCCTGTCACCTTGAGCCCACTTAAGAACTaGTTTCTACAAGCTACAAACCACATGTCCCCACACATGTGTCGA | + |
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Preference number: 1 (lower is better) Translates to: SGSSPVPVTLSPLKN*FLQATNHMSPHMCR Trigger: TCGACACATGTGTGGGGACATGTGGTTTGTAGCTTGTAGAAAGCAGTTCTTAAGTGGGCTCAAGGTGACAGGCACAGGAGAGCTGCCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| 3UTR TCA 90 bp | AGAGTTCCTCCAGTGACTGACTTTCTAGGAACACAGCTTCTACACTaGAGTTTTCAAACTCTTTCTCTTTTGAAGCTCCAAGTTCCCGTG | + |
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Preference number: 1 (lower is better) Translates to: RVPPVTDFLGTQLLH*SFQTLSLLKLQVPV Trigger: CACGGGAACTTGGAGCTTCAAAAGAGAAAGAGTTTGAAAACTTCAGTGTAGAAGCTGTGTTCCTAGAAAGTCAGTCACTGGAGGAACTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| 3UTR TCA 90 bp | CACATGTGTCGATCAGGTAGCCATCTTAAGAGTTCCTCCAGTGACTaGCTTTCTAGGAACACAGCTTCTACACTGAAGTTTTCAAACTCT | + |
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Preference number: 1 (lower is better) Translates to: HMCRSGSHLKSSSSD*LSRNTASTLKFSNS Trigger: AGAGTTTGAAAACTTCAGTGTAGAAGCTGTGTTCCTAGAAAGTCAGTCACTGGAGGAACTCTTAAGATGGCTACCTGATCGACACATGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| 3UTR-3UTR GCA 90 bp | TCAGCTGCTCTCCACAGGGTGAGTGACAGGCCACAACAACAAAGGTCTGGCAGCAGCCCACTTAAGAACTaGTTTCTACAAGCTACAAAC | + |
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Preference number: 2 (lower is better) Translates to: SAALHRVSDRPQQQRSGSSPLKN*FLQATN Trigger: GTTTGTAGCTTGTAGAAAGCAGTTCTTAAGTGGGCT...GCTGCCAGACCTTTGTTGTTGTGGCCTGTCACTCACCCTGTGGAGAGCAGCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| 3UTR-3UTR TCA 90 bp | GCGCTGAAGTCATTAGTGGTTATGTGCGCTGCTCACATGGTCAGCTGCTCTCCAAAACTCTTTCTCTTTTaGAGCTCCAAGTTCCCGTGT | + |
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Preference number: 2 (lower is better) Translates to: ALKSLVVMCAAHMVSCSPKLFLF*SSKFPC Trigger: ACACGGGAACTTGGAGCTTCAAAAGAGAAAGAGTTT...TGGAGAGCAGCTGACCATGTGAGCAGCGCACATAACCACTAATGACTTCAGCGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| 3UTR-3UTR TCA 90 bp | GAAGAAAATAGTGTGAGACTAATTTCCTACAATCTGTCACCTGTCATCAATTCTCTGTGCCTGTCACCTTaGGCCCACTTAAGAACTGCT | + |
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Preference number: 2 (lower is better) Translates to: EENSVRLISYNLSPVINSLCLSP*AHLRTA Trigger: AGCAGTTCTTAAGTGGGCTCAAGGTGACAGGCACAG...AGAATTGATGACAGGTGACAGATTGTAGGAAATTAGTCTCACACTATTTTCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| 3UTR-3UTR TCA 90 bp | CTAATTTCCTACAATCTGTCACCTGTCATCAATTCTTCACTATTATTACTGCAGTCTCCACAGGGTGAGTaGCAGGCCACAACAACAAAG | + |
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Preference number: 2 (lower is better) Translates to: LISYNLSPVINSSLLLLQSPQGE*QATTTK Trigger: CTTTGTTGTTGTGGCCTGTCACTCACCCTGTGGAGA...CTGCAGTAATAATAGTGAAGAATTGATGACAGGTGACAGATTGTAGGAAATTAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| 3UTR-3UTR CCA 90 bp | CTAATTTCCTACAATCTGTCACCTGTCATCAATTCTTCACTATTATTACTGCAGACAACAACAAAGGTCTaGCAGCTCTCCTGTGCCTGT | + |
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Preference number: 2 (lower is better) Translates to: LISYNLSPVINSSLLLLQTTTKV*QLSCAC Trigger: ACAGGCACAGGAGAGCTGCCAGACCTTTGTTGTTGT...CTGCAGTAATAATAGTGAAGAATTGATGACAGGTGACAGATTGTAGGAAATTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| 3UTR TCA 72 bp | GCTGCTCACATGGTCAGCTGCTCTCCACAGGGTGAGTaGCAGGCCACAACAACAAAGGTCTGGCAGCTCTCC | + |
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Preference number: 3 (lower is better) Translates to: AAHMVSCSPQGE*QATTTKVWQLS Trigger: GGAGAGCTGCCAGACCTTTGTTGTTGTGGCCTGTCACTCACCCTGTGGAGAGCAGCTGACCATGTGAGCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| 3UTR TCA 72 bp | GTGCGCTGCTCACATGGTCAGCTGCTCTCCACAGGGTaGGTGACAGGCCACAACAACAAAGGTCTGGCAGCT | + |
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Preference number: 3 (lower is better) Translates to: VRCSHGQLLSTG*VTGHNNKGLAA Trigger: AGCTGCCAGACCTTTGTTGTTGTGGCCTGTCACTCACCCTGTGGAGAGCAGCTGACCATGTGAGCAGCGCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| 3UTR GCA 72 bp | GACAGGACACGCGCGCTGAAGTCATTAGTGGTTATGTaGGCTGCTCACATGGTCAGCTGCTCTCCACAGGGT | + |
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Preference number: 3 (lower is better) Translates to: DRTRALKSLVVM*AAHMVSCSPQG Trigger: ACCCTGTGGAGAGCAGCTGACCATGTGAGCAGCGCACATAACCACTAATGACTTCAGCGCGCGTGTCCTGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| 3UTR GCA 72 bp | TCTCCTGTGCCTGTCACCTTGAGCCCACTTAAGAACTaGTTTCTACAAGCTACAAACCACATGTCCCCACAC | + |
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Preference number: 3 (lower is better) Translates to: SPVPVTLSPLKN*FLQATNHMSPH Trigger: GTGTGGGGACATGTGGTTTGTAGCTTGTAGAAAGCAGTTCTTAAGTGGGCTCAAGGTGACAGGCACAGGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| 3UTR-3UTR CAA 90 bp | CTACAAGCTACAAACCACATGTCCCCACACATGTGTCGATCAGGTAGCCATCTTCAAACTCTTTCTCTTTaGAAGCTCCAAGTTCCCGTG | + |
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Preference number: 3 (lower is better) Translates to: LQATNHMSPHMCRSGSHLQTLSL*KLQVPV Trigger: CACGGGAACTTGGAGCTTCAAAAGAGAAAGAGTTTG...AAGATGGCTACCTGATCGACACATGTGTGGGGACATGTGGTTTGTAGCTTGTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| 3UTR TCA 72 bp | CGATCAGGTAGCCATCTTAAGAGTTCCTCCAGTGACTaGCTTTCTAGGAACACAGCTTCTACACTGAAGTTT | + |
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Preference number: 3 (lower is better) Translates to: RSGSHLKSSSSD*LSRNTASTLKF Trigger: AAACTTCAGTGTAGAAGCTGTGTTCCTAGAAAGTCAGTCACTGGAGGAACTCTTAAGATGGCTACCTGATCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| 3UTR CCA 72 bp | GCATTTGAAGACATTTCCAGTAAATGTTTGAAGCCTTaGCCTAGTAACCCATCTGCCCTAGTCATCAGATTT | + |
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Preference number: 3 (lower is better) Translates to: AFEDISSKCLKP*PSNPSALVIRF Trigger: AAATCTGATGACTAGGGCAGATGGGTTACTAGGCCAAGGCTTCAAACATTTACTGGAAATGTCTTCAAATGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR CCA 90 bp | TCAGCTGCTCTCCACAGGGTGAGTGACAGGCCACAACAACAAAGGTCTGGCAGCTGCGTGCGGAGCTCCTaGTTGTCGCTCTCGGCGTTG | + |
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Preference number: 4 (lower is better) Translates to: SAALHRVSDRPQQQRSGSCVRSS*LSLSAL Trigger: CAACGCCGAGAGCGACAACCAGGAGCTCCGCACGCA...GCTGCCAGACCTTTGTTGTTGTGGCCTGTCACTCACCCTGTGGAGAGCAGCTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR GCA 90 bp | TCAGCTGCTCTCCACAGGGTGAGTGACAGGCCACAACAACAAAGGTCTGGCAGCAGTCGCTCCGTGTGCTaGAGCAGCTTCTCCACCTCC | + |
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Preference number: 4 (lower is better) Translates to: SAALHRVSDRPQQQRSGSSRSVC*SSFSTS Trigger: GGAGGTGGAGAAGCTGCTGCAGCACACGGAGCGACT...GCTGCCAGACCTTTGTTGTTGTGGCCTGTCACTCACCCTGTGGAGAGCAGCTGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR GCA 90 bp | CTACAAGCTACAAACCACATGTCCCCACACATGTGTCGATCAGGTAGCCATCTTTCCACCTCCCGCACCTaGCTCCGGCAGCTCCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: LQATNHMSPHMCRSGSHLSTSRT*LRQLRS Trigger: GCTGCGGAGCTGCCGGAGGCAGGTGCGGGAGGTGGA...AAGATGGCTACCTGATCGACACATGTGTGGGGACATGTGGTTTGTAGCTTGTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR TCA 90 bp | CTACAAGCTACAAACCACATGTCCCCACACATGTGTCGATCAGGTAGCCATCTTGGACACACTCTCCTGTaGGTCAGAGGTGACGGCGTC | + |
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Preference number: 4 (lower is better) Translates to: LQATNHMSPHMCRSGSHLGHTLL*VRGDGV Trigger: GACGCCGTCACCTCTGACTCACAGGAGAGTGTGTCC...AAGATGGCTACCTGATCGACACATGTGTGGGGACATGTGGTTTGTAGCTTGTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR CCA 90 bp | CTACAAGCTACAAACCACATGTCCCCACACATGTGTCGATCAGGTAGCCATCTTCCTTCTCTCTCCCAATaGTGGCTGGGCTCACAGCGG | + |
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Preference number: 4 (lower is better) Translates to: LQATNHMSPHMCRSGSHLPSLSQ*WLGSQR Trigger: CCGCTGTGAGCCCAGCCACCATTGGGAGAGAGAAGG...AAGATGGCTACCTGATCGACACATGTGTGGGGACATGTGGTTTGTAGCTTGTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR TCA 90 bp | ATGTCCCCACACATGTGTCGATCAGGTAGCCATCTTAAGAGTTCCTCCAGTGACATCGTCGGATTCTTCTaGGGTCTCCCTGTCCCCACT | + |
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Preference number: 4 (lower is better) Translates to: MSPHMCRSGSHLKSSSSDIVGFF*GLPVPT Trigger: AGTGGGGACAGGGAGACCTCAGAAGAATCCGACGAT...GTCACTGGAGGAACTCTTAAGATGGCTACCTGATCGACACATGTGTGGGGACAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR CCA 90 bp | ATGTCCCCACACATGTGTCGATCAGGTAGCCATCTTAAGAGTTCCTCCAGTGACGGGGCGTCATCTCTTTaGAAAGTCCCTTCGCTTCCC | + |
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Preference number: 4 (lower is better) Translates to: MSPHMCRSGSHLKSSSSDGASSL*KVPSLP Trigger: GGGAAGCGAAGGGACTTTCCAAAGAGATGACGCCCC...GTCACTGGAGGAACTCTTAAGATGGCTACCTGATCGACACATGTGTGGGGACAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR GCA 90 bp | GCGCTGAAGTCATTAGTGGTTATGTGCGCTGCTCACATGGTCAGCTGCTCTCCAGGGATTCTCACAGTATaGTCCATGTCCTTCTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: ALKSLVVMCAAHMVSCSPGILTV*SMSFSL Trigger: GAGAGAGAAGGACATGGAGCATACTGTGAGAATCCC...TGGAGAGCAGCTGACCATGTGAGCAGCGCACATAACCACTAATGACTTCAGCGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR TCA 90 bp | ATGTCCCCACACATGTGTCGATCAGGTAGCCATCTTAAGAGTTCCTCCAGTGACTCTGTAATTTCAGAGTaGACAGACGCAGGGGCGTCA | + |
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Preference number: 4 (lower is better) Translates to: MSPHMCRSGSHLKSSSSDSVISE*TDAGAS Trigger: TGACGCCCCTGCGTCTGTTCACTCTGAAATTACAGA...GTCACTGGAGGAACTCTTAAGATGGCTACCTGATCGACACATGTGTGGGGACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR CCA 90 bp | TCAGCTGCTCTCCACAGGGTGAGTGACAGGCCACAACAACAAAGGTCTGGCAGCTCTTCTTTCTCTGTTTaGTTTTGTGCTAGAGGTCTG | + |
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Preference number: 4 (lower is better) Translates to: SAALHRVSDRPQQQRSGSSSFSV*FCARGL Trigger: CAGACCTCTAGCACAAAACCAAACAGAGAAAGAAGA...GCTGCCAGACCTTTGTTGTTGTGGCCTGTCACTCACCCTGTGGAGAGCAGCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR CCA 90 bp | TCAGCTGCTCTCCACAGGGTGAGTGACAGGCCACAACAACAAAGGTCTGGCAGCGAGAAGTGTCTGTTCTaGCCTTCTTTTTCACATTTC | + |
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Preference number: 4 (lower is better) Translates to: SAALHRVSDRPQQQRSGSEKCLF*PSFSHF Trigger: GAAATGTGAAAAAGAAGGCCAGAACAGACACTTCTC...GCTGCCAGACCTTTGTTGTTGTGGCCTGTCACTCACCCTGTGGAGAGCAGCTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR GCA 90 bp | TCAGCTGCTCTCCACAGGGTGAGTGACAGGCCACAACAACAAAGGTCTGGCAGCATCCTTTTCTTCATTTaGTGTATAAAAACCTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: SAALHRVSDRPQQQRSGSILFFI*CIKTWL Trigger: GAGCCAGGTTTTTATACAGCAAATGAAGAAAAGGAT...GCTGCCAGACCTTTGTTGTTGTGGCCTGTCACTCACCCTGTGGAGAGCAGCTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR CCA 90 bp | GCTACAAACCACATGTCCCCACACATGTGTCGATCAGGTAGCCATCTTAAGAGTGCCCATCTGCAACACTaGAGACCTAATGACAATCAC | + |
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Preference number: 4 (lower is better) Translates to: ATNHMSPHMCRSGSHLKSAHLQH*RPNDNH Trigger: GTGATTGTCATTAGGTCTCCAGTGTTGCAGATGGGC...ACTCTTAAGATGGCTACCTGATCGACACATGTGTGGGGACATGTGGTTTGTAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR TCA 90 bp | CTACAAGCTACAAACCACATGTCCCCACACATGTGTCGATCAGGTAGCCATCTTACACTGCAGACTTTCTaGTCTTCTGAGCTCAAATCC | + |
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Preference number: 4 (lower is better) Translates to: LQATNHMSPHMCRSGSHLTLQTF*SSELKS Trigger: GGATTTGAGCTCAGAAGATCAGAAAGTCTGCAGTGT...AAGATGGCTACCTGATCGACACATGTGTGGGGACATGTGGTTTGTAGCTTGTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR CCA 90 bp | GCGCTGAAGTCATTAGTGGTTATGTGCGCTGCTCACATGGTCAGCTGCTCTCCATGCTGTATAAAAACCTaGCTCCTTTCTTCTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: ALKSLVVMCAAHMVSCSPCCIKT*LLSSLL Trigger: AAGAAGAGAAGAAAGGAGCCAGGTTTTTATACAGCA...TGGAGAGCAGCTGACCATGTGAGCAGCGCACATAACCACTAATGACTTCAGCGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR TCA 90 bp | ATGTCCCCACACATGTGTCGATCAGGTAGCCATCTTAAGAGTTCCTCCAGTGACGACTTTCTGATCTTCTaGGCTCAAATCCTTTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: MSPHMCRSGSHLKSSSSDDFLIF*AQILFF Trigger: GAAGAAAAGGATTTGAGCTCAGAAGATCAGAAAGTC...GTCACTGGAGGAACTCTTAAGATGGCTACCTGATCGACACATGTGTGGGGACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR GCA 90 bp | GAAGAAAATAGTGTGAGACTAATTTCCTACAATCTGTCACCTGTCATCAATTCTTGTCGCTCTCGGCGTTaGGGTAGAGTCGCTCCGTGT | + |
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Preference number: 4 (lower is better) Translates to: EENSVRLISYNLSPVINSCRSRR*GRVAPC Trigger: ACACGGAGCGACTCTACCGCAACGCCGAGAGCGACA...AGAATTGATGACAGGTGACAGATTGTAGGAAATTAGTCTCACACTATTTTCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR GCA 90 bp | CAAGCTACAAACCACATGTCCCCACACATGTGTCGATCAGGTAGCCATCTTAAGGTCGAAGTAAACTTCTaGGTGGAACTTACTAACAGC | + |
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Preference number: 4 (lower is better) Translates to: QATNHMSPHMCRSGSHLKVEVNF*VELTNS Trigger: GCTGTTAGTAAGTTCCACGCAGAAGTTTACTTCGAC...CTTAAGATGGCTACCTGATCGACACATGTGTGGGGACATGTGGTTTGTAGCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR TCA 90 bp | CTAATTTCCTACAATCTGTCACCTGTCATCAATTCTTCACTATTATTACTGCAGAAGGGACTGCTTTTGTaGGAAGTGTCTGTTCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: LISYNLSPVINSSLLLLQKGLLL*EVSVLA Trigger: GGCCAGAACAGACACTTCTCACAAAAGCAGTCCCTT...CTGCAGTAATAATAGTGAAGAATTGATGACAGGTGACAGATTGTAGGAAATTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR CAA 90 bp | ATGTCCCCACACATGTGTCGATCAGGTAGCCATCTTAAGAGTTCCTCCAGTGACGTGCGGAGCTCCTGGTaGTCGCTCTCGGCGTTGCGG | + |
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Preference number: 5 (lower is better) Translates to: MSPHMCRSGSHLKSSSSDVRSSW*SLSALR Trigger: CCGCAACGCCGAGAGCGACAACCAGGAGCTCCGCAC...GTCACTGGAGGAACTCTTAAGATGGCTACCTGATCGACACATGTGTGGGGACAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR CAA 90 bp | TCAGCTGCTCTCCACAGGGTGAGTGACAGGCCACAACAACAAAGGTCTGGCAGCAATCGCCCAAGGAGCTaGGCTCTCTGTCTGTACTTC | + |
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Preference number: 5 (lower is better) Translates to: SAALHRVSDRPQQQRSGSNRPRS*ALCLYF Trigger: GAAGTACAGACAGAGAGCCAAGCTCCTTGGGCGATT...GCTGCCAGACCTTTGTTGTTGTGGCCTGTCACTCACCCTGTGGAGAGCAGCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR CAA 90 bp | GCTACAAACCACATGTCCCCACACATGTGTCGATCAGGTAGCCATCTTAAGAGTAGGGGCGTCATCTCTTaGGAAAGTCCCTTCGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: ATNHMSPHMCRSGSHLKSRGVIS*ESPFAS Trigger: GGAAGCGAAGGGACTTTCCAAAGAGATGACGCCCCT...ACTCTTAAGATGGCTACCTGATCGACACATGTGTGGGGACATGTGGTTTGTAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS-3UTR CAA 90 bp | CAAGCTACAAACCACATGTCCCCACACATGTGTCGATCAGGTAGCCATCTTAAGAACATCTTTCGGCCTTaGTTGCTATCTGTAATTTCA | + |
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Preference number: 5 (lower is better) Translates to: QATNHMSPHMCRSGSHLKNIFRP*LLSVIS Trigger: TGAAATTACAGATAGCAACAAAGGCCGAAAGATGTT...CTTAAGATGGCTACCTGATCGACACATGTGTGGGGACATGTGGTTTGTAGCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS CCA 72 bp | TTACTCTGCAGTCCCTGTCACCCACGGCACTGCCCCTaGGGTCTCTTTCCGAGGTTTGTTTTCTGTGAAAGT | + |
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Preference number: 6 (lower is better) Translates to: LLCSPCHPRHCP*GLFPRFVFCES Trigger: ACTTTCACAGAAAACAAACCTCGGAAAGAGACCCCAGGGGCAGTGCCGTGGGTGACAGGGACTGCAGAGTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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| CDS TCA 72 bp | ACTGTCGTCATTATAACATGTCTGATAGTAATAATCTaGAATCGCCCAAGGAGCTTGGCTCTCTGTCTGTAC | + |
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Preference number: 6 (lower is better) Translates to: TVVIITCLIVII*NRPRSLALCLY Trigger: GTACAGACAGAGAGCCAAGCTCCTTGGGCGATTTCAGATTATTACTATCAGACATGTTATAATGACGACAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022189.9 |
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