RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AGBL1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025754

Ensembl transcript IDs: ENSMUST00000026854.10, ENSMUST00000107442.3, ENSMUST00000156166.8

Found 256 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTCACAAAGGGAGGCTCTACCCCAGCACCAAAACCACAGCAGAACTaGATCTCTATTCTACTATATCCACTTGAATGGCCCAAGGGAAAC +
Preference number: 1 (lower is better)
Translates to: VTKGGSTPAPKPQQN*ISILLYPLEWPKGN
Trigger: GTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAATAGAGATTCAGTTCTGCTGTGGTTTTGGTGCTGGGGTAGAGCCTCCCTTTGTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR GCA 90 bp TTATCTGGAACTAAGGCCTCTGATTTCAGATTGTCTGACATCATTTaGATAGTACTTGGGACTGGAAAGGAAATCCTATATATGAAGCAA +
Preference number: 1 (lower is better)
Translates to: LSGTKASDFRLSDII*IVLGTGKEILYMKQ
Trigger: TTGCTTCATATATAGGATTTCCTTTCCAGTCCCAAGTACTATGCAAATGATGTCAGACAATCTGAAATCAGAGGCCTTAGTTCCAGATAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR-3UTR TCA 90 bp AATGCCCTTAGAAGAGGGGAGTCCAGACCACAAGGCCCCAAGCTCAGATGGTCTAAGGGGATGATCTTCTaGAAGTCACTAGCATCAGAA +
Preference number: 2 (lower is better)
Translates to: NALRRGESRPQGPKLRWSKGMIF*KSLASE
Trigger: TTCTGATGCTAGTGACTTTCAGAAGATCATCCCCTT...AGACCATCTGAGCTTGGGGCCTTGTGGTCTGGACTCCCCTCTTCTAAGGGCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR-3UTR CCA 90 bp AGGGAAACACTATGTGTTGTTCATCTCTTGAAAGTGGAGTGCAGGGCTCATAGGCTAATCCCTGGAGCCTaGGAATATGGTCTTATCCAG +
Preference number: 2 (lower is better)
Translates to: RETLCVVHLLKVECRAHRLIPGA*EYGLIQ
Trigger: CTGGATAAGACCATATTCCCAGGCTCCAGGGATTAG...CCTATGAGCCCTGCACTCCACTTTCAAGAGATGAACAACACATAGTGTTTCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR-3UTR CCA 90 bp AGGGAAACACTATGTGTTGTTCATCTCTTGAAAGTGGAGTGCAGGGCTCATAGGTGCAACTCTAATCCCTaGAGCCTGGGAATATGGTCT +
Preference number: 2 (lower is better)
Translates to: RETLCVVHLLKVECRAHRCNSNP*SLGIWS
Trigger: AGACCATATTCCCAGGCTCCAGGGATTAGAGTTGCA...CCTATGAGCCCTGCACTCCACTTTCAAGAGATGAACAACACATAGTGTTTCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR-3UTR GCA 90 bp CCCATGAGTGCTGAAGTATCTTTGAACCTGGAAGTGGGTAACCTGAACACAGTCTTCATAAATATATGTTaGAACTCTAATCCCTGGAGC +
Preference number: 2 (lower is better)
Translates to: PMSAEVSLNLEVGNLNTVFINIC*NSNPWS
Trigger: GCTCCAGGGATTAGAGTTGCAACATATATTTATGAA...GACTGTGTTCAGGTTACCCACTTCCAGGTTCAAAGATACTTCAGCACTCATGGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR-3UTR CCA 90 bp TACCCCAGCACCAAAACCACAGCAGAACTGAATCTCTATTCTACTATATCCACTGGTAGATACAACACATaGCAAGAAAAGGGGATGATC +
Preference number: 2 (lower is better)
Translates to: YPSTKTTAELNLYSTISTGRYNT*QEKGMI
Trigger: GATCATCCCCTTTTCTTGCCATGTGTTGTATCTACC...AGTGGATATAGTAGAATAGAGATTCAGTTCTGCTGTGGTTTTGGTGCTGGGGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR-3UTR TCA 90 bp TACCCCAGCACCAAAACCACAGCAGAACTGAATCTCTATTCTACTATATCCACTTCCAGTTTTTACCAGTaGGCATTAAACCATTGTTCT +
Preference number: 2 (lower is better)
Translates to: YPSTKTTAELNLYSTISTSSFYQ*ALNHCS
Trigger: AGAACAATGGTTTAATGCTCACTGGTAAAAACTGGA...AGTGGATATAGTAGAATAGAGATTCAGTTCTGCTGTGGTTTTGGTGCTGGGGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR-3UTR GCA 90 bp ATTACTAAGGTCAGACTGAATAAATGTCCTAACACAGTGATGAATGCCCTTAGAACAGCTTGCCAACTCTaGGATTTTAGACTGCCAGTT +
Preference number: 2 (lower is better)
Translates to: ITKVRLNKCPNTVMNALRTACQL*DFRLPV
Trigger: AACTGGCAGTCTAAAATCGCAGAGTTGGCAAGCTGT...TCTAAGGGCATTCATCACTGTGTTAGGACATTTATTCAGTCTGACCTTAGTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR-3UTR GCA 90 bp TTCTACTATATCCACTTGAATGGCCCAAGGGAAACACTATGTGTTGTTCATCTCGTCTTATCCAGGATGTaGATCTTAACAAGTGGAGAA +
Preference number: 2 (lower is better)
Translates to: FYYIHLNGPRETLCVVHLVLSRM*ILTSGE
Trigger: TTCTCCACTTGTTAAGATGCACATCCTGGATAAGAC...GAGATGAACAACACATAGTGTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR-3UTR TCA 90 bp GTACTTGGGACTGGAAAGGAAATCCTATATATGAAGCAACCTAGAAAAGTGCTAGTTCTGAACCTATCATaGGATGAGTTGTGTCTTCAT +
Preference number: 2 (lower is better)
Translates to: VLGTGKEILYMKQPRKVLVLNLS*DELCLH
Trigger: ATGAAGACACAACTCATCTCATGATAGGTTCAGAAC...TAGCACTTTTCTAGGTTGCTTCATATATAGGATTTCCTTTCCAGTCCCAAGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR TCA 72 bp GGAGGCTCTACCCCAGCACCAAAACCACAGCAGAACTaGATCTCTATTCTACTATATCCACTTGAATGGCCC +
Preference number: 3 (lower is better)
Translates to: GGSTPAPKPQQN*ISILLYPLEWP
Trigger: GGGCCATTCAAGTGGATATAGTAGAATAGAGATTCAGTTCTGCTGTGGTTTTGGTGCTGGGGTAGAGCCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR GCA 72 bp TCCCTGGAGCCTGGGAATATGGTCTTATCCAGGATGTaGATCTTAACAAGTGGAGAATTACTAAGGTCAGAC +
Preference number: 3 (lower is better)
Translates to: SLEPGNMVLSRM*ILTSGELLRSD
Trigger: GTCTGACCTTAGTAATTCTCCACTTGTTAAGATGCACATCCTGGATAAGACCATATTCCCAGGCTCCAGGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR GCA 72 bp CTGAAAGTCACTAGCATCAGAACAGCTTGCCAACTCTaGGATTTTAGACTGCCAGTTTCCAGAAATGTGATG +
Preference number: 3 (lower is better)
Translates to: LKVTSIRTACQL*DFRLPVSRNVM
Trigger: CATCACATTTCTGGAAACTGGCAGTCTAAAATCGCAGAGTTGGCAAGCTGTTCTGATGCTAGTGACTTTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR TCA 72 bp AGATACAACACATGGCAAGAAAAGGGGATGATCTTCTaGAAGTCACTAGCATCAGAACAGCTTGCCAACTCT +
Preference number: 3 (lower is better)
Translates to: RYNTWQEKGMIF*KSLASEQLANS
Trigger: AGAGTTGGCAAGCTGTTCTGATGCTAGTGACTTTCAGAAGATCATCCCCTTTTCTTGCCATGTGTTGTATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR-3UTR CAA 90 bp AATATATGTTGCAACTCTAATCCCTGGAGCCTGGGAATATGGTCTTATCCAGGAGTTTCCCACATATGTTaGTCCCCTTTGTCTATTTTT +
Preference number: 3 (lower is better)
Translates to: NICCNSNPWSLGIWSYPGVSHIC*SPLSIF
Trigger: AAAAATAGACAAAGGGGACAAACATATGTGGGAAAC...TCCTGGATAAGACCATATTCCCAGGCTCCAGGGATTAGAGTTGCAACATATATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR TCA 72 bp AACTCTGCGATTTTAGACTGCCAGTTTCCAGAAATGTaGTGTGAGGAGTTCTGTTTCTTTAAAACATCCAGC +
Preference number: 3 (lower is better)
Translates to: NSAILDCQFPEM*CEEFCFFKTSS
Trigger: GCTGGATGTTTTAAAGAAACAGAACTCCTCACATCACATTTCTGGAAACTGGCAGTCTAAAATCGCAGAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR TCA 72 bp ACAGCAGAACTGAATCTCTATTCTACTATATCCACTTaGATGGCCCAAGGGAAACACTATGTGTTGTTCATC +
Preference number: 3 (lower is better)
Translates to: TAELNLYSTIST*MAQGKHYVLFI
Trigger: GATGAACAACACATAGTGTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAATAGAGATTCAGTTCTGCTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR CCA 72 bp TCTGATATTCCTTCACTTTTACTTAAGCTCTACATGTaGACATTTGTCCCCACACTTCTGCAGATAGATCTG +
Preference number: 3 (lower is better)
Translates to: SDIPSLLLKLYM*TFVPTLLQIDL
Trigger: CAGATCTATCTGCAGAAGTGTGGGGACAAATGTCCACATGTAGAGCTTAAGTAAAAGTGAAGGAATATCAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR GCA 72 bp TATCATGAGATGAGTTGTGTCTTCATAAATATATGTTaGAACTCTAATCCCTGGAGCCTGGGAATATGGTCT +
Preference number: 3 (lower is better)
Translates to: YHEMSCVFINIC*NSNPWSLGIWS
Trigger: AGACCATATTCCCAGGCTCCAGGGATTAGAGTTGCAACATATATTTATGAAGACACAACTCATCTCATGATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR GCA 72 bp ACTAAGGCCTCTGATTTCAGATTGTCTGACATCATTTaGATAGTACTTGGGACTGGAAAGGAAATCCTATAT +
Preference number: 3 (lower is better)
Translates to: TKASDFRLSDII*IVLGTGKEILY
Trigger: ATATAGGATTTCCTTTCCAGTCCCAAGTACTATGCAAATGATGTCAGACAATCTGAAATCAGAGGCCTTAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR-3UTR CAA 90 bp AACAAAACAGAACAGAACATGAGCATTCTCCTAGGCCACTCTGTTGTCATTTTTATATGTTTGTCCCCTTaGTCTATTTTTCTTGCGTTG +
Preference number: 3 (lower is better)
Translates to: NKTEQNMSILLGHSVVIFICLSP*SIFLAL
Trigger: CAACGCAAGAAAAATAGACAAAGGGGACAAACATAT...AAAAATGACAACAGAGTGGCCTAGGAGAATGCTCATGTTCTGTTCTGTTTTGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR GCA 90 bp AGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAAGAGGAGCTCTGAGCTGGTaGTCCCAGGGGCTGGGAAGG +
Preference number: 4 (lower is better)
Translates to: RSEAGLSLELFAPCKGERGALSW*SQGLGR
Trigger: CCTTCCCAGCCCCTGGGAGCACCAGCTCAGAGCTCC...TCTTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR TCA 90 bp AGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAAGAATTGAGTGGGAGCTCTaGGCTGGTGCTCCCAGGGGC +
Preference number: 4 (lower is better)
Translates to: RSEAGLSLELFAPCKGERIEWEL*AGAPRG
Trigger: GCCCCTGGGAGCACCAGCTCAGAGCTCCCACTCAAT...TCTTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp CAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGGTGCTCCCAGGGGCTaGGAAGGTATAGGCACTGCT +
Preference number: 4 (lower is better)
Translates to: QQRSEAGLSLELFAPCKGGAPRG*EGIGTA
Trigger: AGCAGTGCCTATACCTTCCCAGCCCCTGGGAGCACC...TCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR TCA 90 bp CAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGATTGCTCTCTCCTGGGTaGACTCGGGCTGTGATCACC +
Preference number: 4 (lower is better)
Translates to: QQRSEAGLSLELFAPCKGLLSPG*TRAVIT
Trigger: GGTGATCACAGCCCGAGTTCACCCAGGAGAGAGCAA...TCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR TCA 90 bp AGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGCCACGGGGTCACTGCTaGCTAGGAACTCCAAGGTTC +
Preference number: 4 (lower is better)
Translates to: SKGVRQDSAWSFLPLAREPRGHC*LGTPRF
Trigger: GAACCTTGGAGTTCCTAGTCAGCAGTGACCCCGTGG...CTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR TCA 90 bp CACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGTTTATGGTCTGCTGCTaGGCAGAGAGAGCGGGCCGT +
Preference number: 4 (lower is better)
Translates to: HSKGVRQDSAWSFLPLARFMVCC*AERAGR
Trigger: ACGGCCCGCTCTCTCTGCTCAGCAGCAGACCATAAA...CCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR GCA 90 bp CAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAGATAGGGGCCCTGGTTaGAGCCACAGTAGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: QRSEAGLSLELFAPCKGEDRGPG*SHSSCS
Trigger: AGAGCAGCTACTGTGGCTGCAACCAGGGCCCCTATC...TTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp AGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAAGAGCGGGAGGTGGACAGTaGCCCCAGAGATCAGGAAAT +
Preference number: 4 (lower is better)
Translates to: RSEAGLSLELFAPCKGERAGGGQ*PQRSGN
Trigger: ATTTCCTGATCTCTGGGGCCACTGTCCACCTCCCGC...TCTTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp TTTCACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCATTGAGCAGCGGGAGGTaGACAGTGGCCCCAGAGATC +
Preference number: 4 (lower is better)
Translates to: FHSKGVRQDSAWSFLPLALSSGR*TVAPEI
Trigger: GATCTCTGGGGCCACTGTCCACCTCCCGCTGCTCAA...TGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTGAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp CACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGAACCACTGCTGGTGCTaGGAGCTATTCACGTCGGCA +
Preference number: 4 (lower is better)
Translates to: HSKGVRQDSAWSFLPLARNHCWC*ELFTSA
Trigger: TGCCGACGTGAATAGCTCCCAGCACCAGCAGTGGTT...CCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR TCA 90 bp AATGCCCTTAGAAGAGGGGAGTCCAGACCACAAGGCCCCAAGCTCAGATGGTCTCTTCTTCAGTCAGATTaGGTGGGAGCTCTGAGCTGG +
Preference number: 4 (lower is better)
Translates to: NALRRGESRPQGPKLRWSLLQSD*VGALSW
Trigger: CCAGCTCAGAGCTCCCACTCAATCTGACTGAAGAAG...AGACCATCTGAGCTTGGGGCCTTGTGGTCTGGACTCCCCTCTTCTAAGGGCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR TCA 90 bp AGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAAGAGGTGAACTCGGGCTGTaGTCACCTGATATGGACGAC +
Preference number: 4 (lower is better)
Translates to: RSEAGLSLELFAPCKGERGELGL*SPDMDD
Trigger: GTCGTCCATATCAGGTGATCACAGCCCGAGTTCACC...TCTTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR TCA 90 bp CAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAAGAGCCACTGTCTGTTaGGATCCTCGCCTCTCAGTG +
Preference number: 4 (lower is better)
Translates to: QRSEAGLSLELFAPCKGERATVC*DPRLSV
Trigger: CACTGAGAGGCGAGGATCTCAACAGACAGTGGCTCT...TTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR GCA 90 bp AGGGAAACACTATGTGTTGTTCATCTCTTGAAAGTGGAGTGCAGGGCTCATAGGGGAGCTCTGAGCTGGTaGTCCCAGGGGCTGGGAAGG +
Preference number: 4 (lower is better)
Translates to: RETLCVVHLLKVECRAHRGALSW*SQGLGR
Trigger: CCTTCCCAGCCCCTGGGAGCACCAGCTCAGAGCTCC...CCTATGAGCCCTGCACTCCACTTTCAAGAGATGAACAACACATAGTGTTTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR GCA 90 bp CACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGTTGGAAATGCTGCCTTaGAAAGGCCTGGGCTCGTCT +
Preference number: 4 (lower is better)
Translates to: HSKGVRQDSAWSFLPLARLEMLP*KGLGSS
Trigger: AGACGAGCCCAGGCCTTTGCAAGGCAGCATTTCCAA...CCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR GCA 90 bp TCACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGTAGCGCTTCCCCAATaGTCCATCCATGGTAGCTGC +
Preference number: 4 (lower is better)
Translates to: SQQRSEAGLSLELFAPCKVALPQ*SIHGSC
Trigger: GCAGCTACCATGGATGGAGCATTGGGGAAGCGCTAC...CTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR GCA 90 bp TTTCACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCATTCCCTCAGGAGCTTTaGCACGGGGTCACTGCTGAC +
Preference number: 4 (lower is better)
Translates to: FHSKGVRQDSAWSFLPLAFPQEL*HGVTAD
Trigger: GTCAGCAGTGACCCCGTGGCAAAGCTCCTGAGGGAA...TGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp AGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGTGTCACCAGCGGACATaGATTCCCTCCCAACGTTTG +
Preference number: 4 (lower is better)
Translates to: SKGVRQDSAWSFLPLARECHQRT*IPSQRL
Trigger: CAAACGTTGGGAGGGAATCCATGTCCGCTGGTGACA...CTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp CAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAGGCATTGCTCTCTCCTaGGTGAACTCGGGCTGTGAT +
Preference number: 4 (lower is better)
Translates to: QRSEAGLSLELFAPCKGEGIALS*VNSGCD
Trigger: ATCACAGCCCGAGTTCACCCAGGAGAGAGCAATGCC...TTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR TCA 90 bp TCACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGCTTCTTCAGTCAGATTaGGTGGGAGCTCTGAGCTGG +
Preference number: 4 (lower is better)
Translates to: SQQRSEAGLSLELFAPCKLLQSD*VGALSW
Trigger: CCAGCTCAGAGCTCCCACTCAATCTGACTGAAGAAG...CTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR TCA 90 bp TCACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGTCATGCCGCTCACCTTaGAGTAGAACCACTGCTGGT +
Preference number: 4 (lower is better)
Translates to: SQQRSEAGLSLELFAPCKSCRSP*SRTTAG
Trigger: ACCAGCAGTGGTTCTACTTCAAGGTGAGCGGCATGA...CTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp AAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAACCTTCATCACCCAGCTaGCATTGCTCTCTCCTGGGT +
Preference number: 4 (lower is better)
Translates to: KGVRQDSAWSFLPLAREKPSSPS*HCSLLG
Trigger: ACCCAGGAGAGAGCAATGCCAGCTGGGTGATGAAGG...TTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR TCA 90 bp CAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAGCTGCATCCCATAGTTaGACTGGCTGTTGGGTTTCT +
Preference number: 4 (lower is better)
Translates to: QRSEAGLSLELFAPCKGEAASHS*TGCWVS
Trigger: AGAAACCCAACAGCCAGTTCAACTATGGGATGCAGC...TTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR TCA 90 bp CCCATGAGTGCTGAAGTATCTTTGAACCTGGAAGTGGGTAACCTGAACACAGTCTTGCTCTCTCCTGGGTaGACTCGGGCTGTGATCACC +
Preference number: 4 (lower is better)
Translates to: PMSAEVSLNLEVGNLNTVLLSPG*TRAVIT
Trigger: GGTGATCACAGCCCGAGTTCACCCAGGAGAGAGCAA...GACTGTGTTCAGGTTACCCACTTCCAGGTTCAAAGATACTTCAGCACTCATGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR TCA 90 bp CAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAATGCAGCTGTTCATGGTaGATGCTGGTGCTAGCTTGT +
Preference number: 4 (lower is better)
Translates to: QRSEAGLSLELFAPCKGECSCSW*MLVLAC
Trigger: ACAAGCTAGCACCAGCATTCACCATGAACAGCTGCA...TTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp CCCAAGGGAAACACTATGTGTTGTTCATCTCTTGAAAGTGGAGTGCAGGGCTCAGCGGGAGGTGGACAGTaGCCCCAGAGATCAGGAAAT +
Preference number: 4 (lower is better)
Translates to: PKGNTMCCSSLESGVQGSAGGGQ*PQRSGN
Trigger: ATTTCCTGATCTCTGGGGCCACTGTCCACCTCCCGC...TGAGCCCTGCACTCCACTTTCAAGAGATGAACAACACATAGTGTTTCCCTTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp CAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAACTCACGCACTTGGATaGCTTTACGGAGATTTCCTG +
Preference number: 4 (lower is better)
Translates to: QQRSEAGLSLELFAPCKGTHALG*LYGDFL
Trigger: CAGGAAATCTCCGTAAAGCCATCCAAGTGCGTGAGT...TCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp CAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAATTCCCTCCCAACGTTTaGCAGAGAACATCATGTCGG +
Preference number: 4 (lower is better)
Translates to: QRSEAGLSLELFAPCKGEFPPNV*QRTSCR
Trigger: CCGACATGATGTTCTCTGCCAAACGTTGGGAGGGAA...TTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR TCA 90 bp TCACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGCAGGCATCCTCATTATaGGGGAAGGTAACAGCAAAG +
Preference number: 4 (lower is better)
Translates to: SQQRSEAGLSLELFAPCKQASSL*GKVTAK
Trigger: CTTTGCTGTTACCTTCCCTCATAATGAGGATGCCTG...CTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR TCA 90 bp AAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAAATCCTCGCCTCTCAGTaGGCATCTGTGATTGCCATT +
Preference number: 4 (lower is better)
Translates to: KGVRQDSAWSFLPLAREKILASQ*ASVIAI
Trigger: AATGGCAATCACAGATGCTCACTGAGAGGCGAGGAT...TTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR GCA 90 bp CAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAACATTGCATCATACTGTaGAAGTTCCTCCTCAGGGAG +
Preference number: 4 (lower is better)
Translates to: QRSEAGLSLELFAPCKGEHCIIL*KFLLRE
Trigger: CTCCCTGAGGAGGAACTTGCACAGTATGATGCAATG...TTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR GCA 90 bp AGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAAGATCGTGGAAAGGTATGTaGTTGGCATGTGTGTGCAGA +
Preference number: 4 (lower is better)
Translates to: RSEAGLSLELFAPCKGERSWKGM*LACVCR
Trigger: TCTGCACACACATGCCAAGCACATACCTTTCCACGA...TCTTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR GCA 90 bp AGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGCCAGAGATCAGGAAATaGCATTGTCTTGAATCCCAC +
Preference number: 4 (lower is better)
Translates to: SKGVRQDSAWSFLPLAREPEIRK*HCLESH
Trigger: GTGGGATTCAAGACAATGGCATTTCCTGATCTCTGG...CTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR GCA 90 bp CCCATGAGTGCTGAAGTATCTTTGAACCTGGAAGTGGGTAACCTGAACACAGTCGTAGCGCTTCCCCAATaGTCCATCCATGGTAGCTGC +
Preference number: 4 (lower is better)
Translates to: PMSAEVSLNLEVGNLNTVVALPQ*SIHGSC
Trigger: GCAGCTACCATGGATGGAGCATTGGGGAAGCGCTAC...GACTGTGTTCAGGTTACCCACTTCCAGGTTCAAAGATACTTCAGCACTCATGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp CAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAGAGAGAAGCAACACTTaGAATGTGGTGGTGATTGGC +
Preference number: 4 (lower is better)
Translates to: QRSEAGLSLELFAPCKGEERSNT*NVVVIG
Trigger: GCCAATCACCACCACATTCCAAGTGTTGCTTCTCTC...TTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp CACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGTTTATAACATCACTTaGATGGAGGAGCCTCCGGAT +
Preference number: 4 (lower is better)
Translates to: HSKGVRQDSAWSFLPLARVYNIT*MEEPPD
Trigger: ATCCGGAGGCTCCTCCATCCAAGTGATGTTATAAAC...CCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp CCAGACCACAAGGCCCCAAGCTCAGATGGTCTTGTGAAGATGTTAAGTGATGAACCTTCATCACCCAGCTaGCATTGCTCTCTCCTGGGT +
Preference number: 4 (lower is better)
Translates to: PDHKAPSSDGLVKMLSDEPSSPS*HCSLLG
Trigger: ACCCAGGAGAGAGCAATGCCAGCTGGGTGATGAAGG...TTCATCACTTAACATCTTCACAAGACCATCTGAGCTTGGGGCCTTGTGGTCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR TCA 90 bp TTCTACTATATCCACTTGAATGGCCCAAGGGAAACACTATGTGTTGTTCATCTCATTGAGTGGGAGCTCTaGGCTGGTGCTCCCAGGGGC +
Preference number: 4 (lower is better)
Translates to: FYYIHLNGPRETLCVVHLIEWEL*AGAPRG
Trigger: GCCCCTGGGAGCACCAGCTCAGAGCTCCCACTCAAT...GAGATGAACAACACATAGTGTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR TCA 90 bp CAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGATATTCACGTCGGCATTaGCCAACAAGTCATACTCAA +
Preference number: 4 (lower is better)
Translates to: QQRSEAGLSLELFAPCKGYSRRH*PTSHTQ
Trigger: TTGAGTATGACTTGTTGGTCAATGCCGACGTGAATA...TCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR TCA 90 bp TCCCCTTTGTCTATTTTTCTTGCGTTGACAGTTGATGGGCTATCTCCTAGAGAGCCACGGGGTCACTGCTaGCTAGGAACTCCAAGGTTC +
Preference number: 4 (lower is better)
Translates to: SPLSIFLALTVDGLSPREPRGHC*LGTPRF
Trigger: GAACCTTGGAGTTCCTAGTCAGCAGTGACCCCGTGG...CTCTCTAGGAGATAGCCCATCAACTGTCAACGCAAGAAAAATAGACAAAGGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR TCA 90 bp TTTCACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAGGCAGTGGAAGCTCGTaGTTTTTCAACCAGAAAGCT +
Preference number: 4 (lower is better)
Translates to: FHSKGVRQDSAWSFLPLAGSGSS*FFNQKA
Trigger: AGCTTTCTGGTTGAAAAATCACGAGCTTCCACTGCC...TGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR GCA 90 bp AGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAAGATTAAGCAATTGGAAATaGTGCCTTGCAAAGGCCTGG +
Preference number: 4 (lower is better)
Translates to: RSEAGLSLELFAPCKGERLSNWK*CLAKAW
Trigger: CCAGGCCTTTGCAAGGCAGCATTTCCAATTGCTTAA...TCTTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp TTTCACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCACACTGTCTGAGGATCTaGATCACAGCAGAGATCACA +
Preference number: 4 (lower is better)
Translates to: FHSKGVRQDSAWSFLPLAHCLRI*ITAEIT
Trigger: TGTGATCTCTGCTGTGATCCAGATCCTCAGACAGTG...TGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp TCACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAAAGGTATGTGCTTaGCATGTGTGTGCAGAAGTT +
Preference number: 4 (lower is better)
Translates to: SQQRSEAGLSLELFAPCKGKVCA*HVCAEV
Trigger: AACTTCTGCACACACATGCCAAGCACATACCTTTCC...CTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp AAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAAATAACATCACTTGGATaGAGGAGCCTCCGGATATCC +
Preference number: 4 (lower is better)
Translates to: KGVRQDSAWSFLPLAREKITSLG*RSLRIS
Trigger: GGATATCCGGAGGCTCCTCCATCCAAGTGATGTTAT...TTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp CCCATGAGTGCTGAAGTATCTTTGAACCTGGAAGTGGGTAACCTGAACACAGTCTGTCACCAGCGGACATaGATTCCCTCCCAACGTTTG +
Preference number: 4 (lower is better)
Translates to: PMSAEVSLNLEVGNLNTVCHQRT*IPSQRL
Trigger: CAAACGTTGGGAGGGAATCCATGTCCGCTGGTGACA...GACTGTGTTCAGGTTACCCACTTCCAGGTTCAAAGATACTTCAGCACTCATGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp TCACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGCTTGTCCAGGATTTTTaGAAGTGTCCTGTAGCTGAC +
Preference number: 4 (lower is better)
Translates to: SQQRSEAGLSLELFAPCKLVQDF*KCPVAD
Trigger: GTCAGCTACAGGACACTTCCAAAAATCCTGGACAAG...CTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp TTTCACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGTAGCTGCTCTCCATaGTATAGCTTCTGGAAACCC +
Preference number: 4 (lower is better)
Translates to: FHSKGVRQDSAWSFLPLASSCSP*YSFWKP
Trigger: GGGTTTCCAGAAGCTATACCATGGAGAGCAGCTACT...TGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR TCA 90 bp CACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGTTTACGGAGATTTCCTaGTTCAAACTTGGAGTGGAA +
Preference number: 4 (lower is better)
Translates to: HSKGVRQDSAWSFLPLARFTEIS*FKLGVE
Trigger: TTCCACTCCAAGTTTGAATCAGGAAATCTCCGTAAA...CCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR GCA 90 bp AGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAAGAACAGTACAGCCTGCTTaGCACAAAGTTTCTTTCATG +
Preference number: 4 (lower is better)
Translates to: RSEAGLSLELFAPCKGERTVQPA*HKVSFM
Trigger: CATGAAAGAAACTTTGTGGCAAGCAGGCTGTACTGT...TCTTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp TTCTACTATATCCACTTGAATGGCCCAAGGGAAACACTATGTGTTGTTCATCTCGGTGCTCCCAGGGGCTaGGAAGGTATAGGCACTGCT +
Preference number: 4 (lower is better)
Translates to: FYYIHLNGPRETLCVVHLGAPRG*EGIGTA
Trigger: AGCAGTGCCTATACCTTCCCAGCCCCTGGGAGCACC...GAGATGAACAACACATAGTGTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp AAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAATGCAGAATGGACGAGTaGACTGTGTCTTCTCTTTCT +
Preference number: 4 (lower is better)
Translates to: KGVRQDSAWSFLPLAREKCRMDE*TVSSLS
Trigger: AGAAAGAGAAGACACAGTCCACTCGTCCATTCTGCA...TTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp TCACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGTCCGATGCTTTCTTCTaGCTTGGTAGAATTGGGAAA +
Preference number: 4 (lower is better)
Translates to: SQQRSEAGLSLELFAPCKSDAFF*LGRIGK
Trigger: TTTCCCAATTCTACCAAGCCAGAAGAAAGCATCGGA...CTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp AATGCCCTTAGAAGAGGGGAGTCCAGACCACAAGGCCCCAAGCTCAGATGGTCTGGAACATTAAGCAATTaGAAATGCTGCCTTGCAAAG +
Preference number: 4 (lower is better)
Translates to: NALRRGESRPQGPKLRWSGTLSN*KCCLAK
Trigger: CTTTGCAAGGCAGCATTTCCAATTGCTTAATGTTCC...AGACCATCTGAGCTTGGGGCCTTGTGGTCTGGACTCCCCTCTTCTAAGGGCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp CAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGGAACATTAAGCAATTaGAAATGCTGCCTTGCAAAG +
Preference number: 4 (lower is better)
Translates to: QQRSEAGLSLELFAPCKGGTLSN*KCCLAK
Trigger: CTTTGCAAGGCAGCATTTCCAATTGCTTAATGTTCC...TCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp AGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAAGATCAAACTCACGCACTTaGATGGCTTTACGGAGATTT +
Preference number: 4 (lower is better)
Translates to: RSEAGLSLELFAPCKGERSNSRT*MALRRF
Trigger: AAATCTCCGTAAAGCCATCCAAGTGCGTGAGTTTGA...TCTTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp TCACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGTTTCCCCTATTTTTATaGTCTGCTGCTGAGCAGAGA +
Preference number: 4 (lower is better)
Translates to: SQQRSEAGLSLELFAPCKFPLFL*SAAEQR
Trigger: TCTCTGCTCAGCAGCAGACCATAAAAATAGGGGAAA...CTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR TCA 90 bp TTTCACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAGGTAGAATTGGGAAATaGAGCAGTTATCCTTGGACA +
Preference number: 4 (lower is better)
Translates to: FHSKGVRQDSAWSFLPLAGRIGK*SSYPWT
Trigger: TGTCCAAGGATAACTGCTTCATTTCCCAATTCTACC...TGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR TCA 90 bp AGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAAGATCCAGAATTTCAAGATaGGTCATGAGGGTGGAATAT +
Preference number: 4 (lower is better)
Translates to: RSEAGLSLELFAPCKGERSRISR*VMRVEY
Trigger: ATATTCCACCCTCATGACTCATCTTGAAATTCTGGA...TCTTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR TCA 90 bp TACCCCAGCACCAAAACCACAGCAGAACTGAATCTCTATTCTACTATATCCACTAGAGCCACTGTCTGTTaGGATCCTCGCCTCTCAGTG +
Preference number: 4 (lower is better)
Translates to: YPSTKTTAELNLYSTISTRATVC*DPRLSV
Trigger: CACTGAGAGGCGAGGATCTCAACAGACAGTGGCTCT...AGTGGATATAGTAGAATAGAGATTCAGTTCTGCTGTGGTTTTGGTGCTGGGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp TATGGTCTTATCCAGGATGTGCATCTTAACAAGTGGAGAATTACTAAGGTCAGATTGAGCAGCGGGAGGTaGACAGTGGCCCCAGAGATC +
Preference number: 4 (lower is better)
Translates to: YGLIQDVHLNKWRITKVRLSSGR*TVAPEI
Trigger: GATCTCTGGGGCCACTGTCCACCTCCCGCTGCTCAA...TCTGACCTTAGTAATTCTCCACTTGTTAAGATGCACATCCTGGATAAGACCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp CCCAAGGGAAACACTATGTGTTGTTCATCTCTTGAAAGTGGAGTGCAGGGCTCAATAACATCACTTGGATaGAGGAGCCTCCGGATATCC +
Preference number: 4 (lower is better)
Translates to: PKGNTMCCSSLESGVQGSITSLG*RSLRIS
Trigger: GGATATCCGGAGGCTCCTCCATCCAAGTGATGTTAT...TGAGCCCTGCACTCCACTTTCAAGAGATGAACAACACATAGTGTTTCCCTTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR TCA 90 bp TCCCCTTTGTCTATTTTTCTTGCGTTGACAGTTGATGGGCTATCTCCTAGAGAGCACAGCCTCCACATCTaGGTCTTTGTCCATCTCTTC +
Preference number: 4 (lower is better)
Translates to: SPLSIFLALTVDGLSPREHSLHI*VFVHLF
Trigger: GAAGAGATGGACAAAGACTCAGATGTGGAGGCTGTG...CTCTCTAGGAGATAGCCCATCAACTGTCAACGCAAGAAAAATAGACAAAGGGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR TCA 90 bp TTCACAGCTATTTTGAGTCCCATGAGTGCTGAAGTATCTTTGAACCTGGAAGTGTCATGCCGCTCACCTTaGAGTAGAACCACTGCTGGT +
Preference number: 4 (lower is better)
Translates to: FTAILSPMSAEVSLNLEVSCRSP*SRTTAG
Trigger: ACCAGCAGTGGTTCTACTTCAAGGTGAGCGGCATGA...CACTTCCAGGTTCAAAGATACTTCAGCACTCATGGGACTCAAAATAGCTGTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR GCA 90 bp ATCTCTATTCTACTATATCCACTTGAATGGCCCAAGGGAAACACTATGTGTTGTTTCCCTCAGGAGCTTTaGCACGGGGTCACTGCTGAC +
Preference number: 4 (lower is better)
Translates to: ISILLYPLEWPKGNTMCCFPQEL*HGVTAD
Trigger: GTCAGCAGTGACCCCGTGGCAAAGCTCCTGAGGGAA...ACAACACATAGTGTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAATAGAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp AGGGAAACACTATGTGTTGTTCATCTCTTGAAAGTGGAGTGCAGGGCTCATAGGGAGAGAAGCAACACTTaGAATGTGGTGGTGATTGGC +
Preference number: 4 (lower is better)
Translates to: RETLCVVHLLKVECRAHRERSNT*NVVVIG
Trigger: GCCAATCACCACCACATTCCAAGTGTTGCTTCTCTC...CCTATGAGCCCTGCACTCCACTTTCAAGAGATGAACAACACATAGTGTTTCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp CCCAAGGGAAACACTATGTGTTGTTCATCTCTTGAAAGTGGAGTGCAGGGCTCATGCAGAATGGACGAGTaGACTGTGTCTTCTCTTTCT +
Preference number: 4 (lower is better)
Translates to: PKGNTMCCSSLESGVQGSCRMDE*TVSSLS
Trigger: AGAAAGAGAAGACACAGTCCACTCGTCCATTCTGCA...TGAGCCCTGCACTCCACTTTCAAGAGATGAACAACACATAGTGTTTCCCTTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp CCAGACCACAAGGCCCCAAGCTCAGATGGTCTTGTGAAGATGTTAAGTGATGAAGTTTATAACATCACTTaGATGGAGGAGCCTCCGGAT +
Preference number: 4 (lower is better)
Translates to: PDHKAPSSDGLVKMLSDEVYNIT*MEEPPD
Trigger: ATCCGGAGGCTCCTCCATCCAAGTGATGTTATAAAC...TTCATCACTTAACATCTTCACAAGACCATCTGAGCTTGGGGCCTTGTGGTCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp CAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAGATTCAAACTTGGAGTaGAACATTAAGCAATTGGAA +
Preference number: 4 (lower is better)
Translates to: QRSEAGLSLELFAPCKGEDSNLE*NIKQLE
Trigger: TTCCAATTGCTTAATGTTCCACTCCAAGTTTGAATC...TTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp ATCTCTATTCTACTATATCCACTTGAATGGCCCAAGGGAAACACTATGTGTTGTAACCACTGCTGGTGCTaGGAGCTATTCACGTCGGCA +
Preference number: 4 (lower is better)
Translates to: ISILLYPLEWPKGNTMCCNHCWC*ELFTSA
Trigger: TGCCGACGTGAATAGCTCCCAGCACCAGCAGTGGTT...ACAACACATAGTGTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAATAGAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp TATGGTCTTATCCAGGATGTGCATCTTAACAAGTGGAGAATTACTAAGGTCAGAGGCATTGCTCTCTCCTaGGTGAACTCGGGCTGTGAT +
Preference number: 4 (lower is better)
Translates to: YGLIQDVHLNKWRITKVRGIALS*VNSGCD
Trigger: ATCACAGCCCGAGTTCACCCAGGAGAGAGCAATGCC...TCTGACCTTAGTAATTCTCCACTTGTTAAGATGCACATCCTGGATAAGACCATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR TCA 90 bp ATTACTAAGGTCAGACTGAATAAATGTCCTAACACAGTGATGAATGCCCTTAGAGGTGAACTCGGGCTGTaGTCACCTGATATGGACGAC +
Preference number: 4 (lower is better)
Translates to: ITKVRLNKCPNTVMNALRGELGL*SPDMDD
Trigger: GTCGTCCATATCAGGTGATCACAGCCCGAGTTCACC...TCTAAGGGCATTCATCACTGTGTTAGGACATTTATTCAGTCTGACCTTAGTAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR GCA 90 bp ATCTCTATTCTACTATATCCACTTGAATGGCCCAAGGGAAACACTATGTGTTGTTTGGAAATGCTGCCTTaGAAAGGCCTGGGCTCGTCT +
Preference number: 4 (lower is better)
Translates to: ISILLYPLEWPKGNTMCCLEMLP*KGLGSS
Trigger: AGACGAGCCCAGGCCTTTGCAAGGCAGCATTTCCAA...ACAACACATAGTGTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAATAGAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp TGTTTGTCCCCTTTGTCTATTTTTCTTGCGTTGACAGTTGATGGGCTATCTCCTCACTGTCTGAGGATCTaGATCACAGCAGAGATCACA +
Preference number: 4 (lower is better)
Translates to: CLSPLSIFLALTVDGLSPHCLRI*ITAEIT
Trigger: TGTGATCTCTGCTGTGATCCAGATCCTCAGACAGTG...AGGAGATAGCCCATCAACTGTCAACGCAAGAAAAATAGACAAAGGGGACAAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp AGGGAAACACTATGTGTTGTTCATCTCTTGAAAGTGGAGTGCAGGGCTCATAGGTCCGATGCTTTCTTCTaGCTTGGTAGAATTGGGAAA +
Preference number: 4 (lower is better)
Translates to: RETLCVVHLLKVECRAHRSDAFF*LGRIGK
Trigger: TTTCCCAATTCTACCAAGCCAGAAGAAAGCATCGGA...CCTATGAGCCCTGCACTCCACTTTCAAGAGATGAACAACACATAGTGTTTCCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp AAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAATTCCTGATTCAAACTTaGAGTGGAACATTAAGCAAT +
Preference number: 4 (lower is better)
Translates to: KGVRQDSAWSFLPLAREKFLIQT*SGTLSN
Trigger: ATTGCTTAATGTTCCACTCCAAGTTTGAATCAGGAA...TTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CCA 90 bp TACCCCAGCACCAAAACCACAGCAGAACTGAATCTCTATTCTACTATATCCACTACTCACGCACTTGGATaGCTTTACGGAGATTTCCTG +
Preference number: 4 (lower is better)
Translates to: YPSTKTTAELNLYSTISTTHALG*LYGDFL
Trigger: CAGGAAATCTCCGTAAAGCCATCCAAGTGCGTGAGT...AGTGGATATAGTAGAATAGAGATTCAGTTCTGCTGTGGTTTTGGTGCTGGGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR TCA 90 bp GTACTTGGGACTGGAAAGGAAATCCTATATATGAAGCAACCTAGAAAAGTGCTAGCTGCATCCCATAGTTaGACTGGCTGTTGGGTTTCT +
Preference number: 4 (lower is better)
Translates to: VLGTGKEILYMKQPRKVLAASHS*TGCWVS
Trigger: AGAAACCCAACAGCCAGTTCAACTATGGGATGCAGC...TAGCACTTTTCTAGGTTGCTTCATATATAGGATTTCCTTTCCAGTCCCAAGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR TCA 90 bp ATCTCTATTCTACTATATCCACTTGAATGGCCCAAGGGAAACACTATGTGTTGTATCCTCGCCTCTCAGTaGGCATCTGTGATTGCCATT +
Preference number: 4 (lower is better)
Translates to: ISILLYPLEWPKGNTMCCILASQ*ASVIAI
Trigger: AATGGCAATCACAGATGCTCACTGAGAGGCGAGGAT...ACAACACATAGTGTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAATAGAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR GCA 90 bp TTCTACTATATCCACTTGAATGGCCCAAGGGAAACACTATGTGTTGTTCATCTCCCTTGGACAAGAAATTaGTTCCATGTCCCAAGCAGC +
Preference number: 4 (lower is better)
Translates to: FYYIHLNGPRETLCVVHLPWTRN*FHVPSS
Trigger: GCTGCTTGGGACATGGAAGCAATTTCTTGTCCAAGG...GAGATGAACAACACATAGTGTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp TTCACAGCTATTTTGAGTCCCATGAGTGCTGAAGTATCTTTGAACCTGGAAGTGGGAAAGGTATGTGCTTaGCATGTGTGTGCAGAAGTT +
Preference number: 4 (lower is better)
Translates to: FTAILSPMSAEVSLNLEVGKVCA*HVCAEV
Trigger: AACTTCTGCACACACATGCCAAGCACATACCTTTCC...CACTTCCAGGTTCAAAGATACTTCAGCACTCATGGGACTCAAAATAGCTGTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp AACAAAACAGAACAGAACATGAGCATTCTCCTAGGCCACTCTGTTGTCATTTTTTTCCCTCCCAACGTTTaGCAGAGAACATCATGTCGG +
Preference number: 4 (lower is better)
Translates to: NKTEQNMSILLGHSVVIFFPPNV*QRTSCR
Trigger: CCGACATGATGTTCTCTGCCAAACGTTGGGAGGGAA...AAAAATGACAACAGAGTGGCCTAGGAGAATGCTCATGTTCTGTTCTGTTTTGTT
43% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR CAA 72 bp ACAGCTATTTTGAGTCCCATGAGTGCTGAAGTATCTTaGAACCTGGAAGTGGGTAACCTGAACACAGTCAAA +
Preference number: 4 (lower is better)
Translates to: TAILSPMSAEVS*NLEVGNLNTVK
Trigger: TTTGACTGTGTTCAGGTTACCCACTTCCAGGTTCAAAGATACTTCAGCACTCATGGGACTCAAAATAGCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR TCA 90 bp ATCTCTATTCTACTATATCCACTTGAATGGCCCAAGGGAAACACTATGTGTTGTCAGGCATCCTCATTATaGGGGAAGGTAACAGCAAAG +
Preference number: 4 (lower is better)
Translates to: ISILLYPLEWPKGNTMCCQASSL*GKVTAK
Trigger: CTTTGCTGTTACCTTCCCTCATAATGAGGATGCCTG...ACAACACATAGTGTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAATAGAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR TCA 90 bp GTACTTGGGACTGGAAAGGAAATCCTATATATGAAGCAACCTAGAAAAGTGCTAATAAAAAGAAGGAAGTaGCTTACCACAGGTCCCCGG +
Preference number: 4 (lower is better)
Translates to: VLGTGKEILYMKQPRKVLIKRRK*LTTGPR
Trigger: CCGGGGACCTGTGGTAAGTCACTTCCTTCTTTTTAT...TAGCACTTTTCTAGGTTGCTTCATATATAGGATTTCCTTTCCAGTCCCAAGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR GCA 90 bp ATCTCTATTCTACTATATCCACTTGAATGGCCCAAGGGAAACACTATGTGTTGTCATTGCATCATACTGTaGAAGTTCCTCCTCAGGGAG +
Preference number: 4 (lower is better)
Translates to: ISILLYPLEWPKGNTMCCHCIIL*KFLLRE
Trigger: CTCCCTGAGGAGGAACTTGCACAGTATGATGCAATG...ACAACACATAGTGTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAATAGAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR GCA 90 bp ATTACTAAGGTCAGACTGAATAAATGTCCTAACACAGTGATGAATGCCCTTAGATCGTGGAAAGGTATGTaGTTGGCATGTGTGTGCAGA +
Preference number: 4 (lower is better)
Translates to: ITKVRLNKCPNTVMNALRSWKGM*LACVCR
Trigger: TCTGCACACACATGCCAAGCACATACCTTTCCACGA...TCTAAGGGCATTCATCACTGTGTTAGGACATTTATTCAGTCTGACCTTAGTAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR GCA 90 bp AACAAAACAGAACAGAACATGAGCATTCTCCTAGGCCACTCTGTTGTCATTTTTCCAGAGATCAGGAAATaGCATTGTCTTGAATCCCAC +
Preference number: 4 (lower is better)
Translates to: NKTEQNMSILLGHSVVIFPEIRK*HCLESH
Trigger: GTGGGATTCAAGACAATGGCATTTCCTGATCTCTGG...AAAAATGACAACAGAGTGGCCTAGGAGAATGCTCATGTTCTGTTCTGTTTTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR GCA 90 bp AACAAAACAGAACAGAACATGAGCATTCTCCTAGGCCACTCTGTTGTCATTTTTTTAAGCAATTGGAAATaGTGCCTTGCAAAGGCCTGG +
Preference number: 4 (lower is better)
Translates to: NKTEQNMSILLGHSVVIFLSNWK*CLAKAW
Trigger: CCAGGCCTTTGCAAGGCAGCATTTCCAATTGCTTAA...AAAAATGACAACAGAGTGGCCTAGGAGAATGCTCATGTTCTGTTCTGTTTTGTT
41% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp TATGGTCTTATCCAGGATGTGCATCTTAACAAGTGGAGAATTACTAAGGTCAGAGAATGTGGTGGTGATTaGCATGCAGAGTGTCTTTGT +
Preference number: 4 (lower is better)
Translates to: YGLIQDVHLNKWRITKVRECGGD*HAECLC
Trigger: ACAAAGACACTCTGCATGCCAATCACCACCACATTC...TCTGACCTTAGTAATTCTCCACTTGTTAAGATGCACATCCTGGATAAGACCATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp TTCTACTATATCCACTTGAATGGCCCAAGGGAAACACTATGTGTTGTTCATCTCTCAAACTCACGCACTTaGATGGCTTTACGGAGATTT +
Preference number: 4 (lower is better)
Translates to: FYYIHLNGPRETLCVVHLSNSRT*MALRRF
Trigger: AAATCTCCGTAAAGCCATCCAAGTGCGTGAGTTTGA...GAGATGAACAACACATAGTGTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR TCA 90 bp ATCTCTATTCTACTATATCCACTTGAATGGCCCAAGGGAAACACTATGTGTTGTGGTAGAATTGGGAAATaGAGCAGTTATCCTTGGACA +
Preference number: 4 (lower is better)
Translates to: ISILLYPLEWPKGNTMCCGRIGK*SSYPWT
Trigger: TGTCCAAGGATAACTGCTTCATTTCCCAATTCTACC...ACAACACATAGTGTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAATAGAGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR TCA 90 bp TTCTACTATATCCACTTGAATGGCCCAAGGGAAACACTATGTGTTGTTCATCTCTTTACGGAGATTTCCTaGTTCAAACTTGGAGTGGAA +
Preference number: 4 (lower is better)
Translates to: FYYIHLNGPRETLCVVHLFTEIS*FKLGVE
Trigger: TTCCACTCCAAGTTTGAATCAGGAAATCTCCGTAAA...GAGATGAACAACACATAGTGTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR TCA 90 bp GTACTTGGGACTGGAAAGGAAATCCTATATATGAAGCAACCTAGAAAAGTGCTATATTCACGTCGGCATTaGCCAACAAGTCATACTCAA +
Preference number: 4 (lower is better)
Translates to: VLGTGKEILYMKQPRKVLYSRRH*PTSHTQ
Trigger: TTGAGTATGACTTGTTGGTCAATGCCGACGTGAATA...TAGCACTTTTCTAGGTTGCTTCATATATAGGATTTCCTTTCCAGTCCCAAGTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR TCA 90 bp TTCTACTATATCCACTTGAATGGCCCAAGGGAAACACTATGTGTTGTTCATCTCTCCAGAATTTCAAGATaGGTCATGAGGGTGGAATAT +
Preference number: 4 (lower is better)
Translates to: FYYIHLNGPRETLCVVHLSRISR*VMRVEY
Trigger: ATATTCCACCCTCATGACTCATCTTGAAATTCTGGA...GAGATGAACAACACATAGTGTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR CAA 72 bp CACAGCAGAACTGAATCTCTATTCTACTATATCCACTaGAATGGCCCAAGGGAAACACTATGTGTTGTTCAT +
Preference number: 4 (lower is better)
Translates to: HSRTESLFYYIH*NGPRETLCVVH
Trigger: ATGAACAACACATAGTGTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAATAGAGATTCAGTTCTGCTGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp TATGGTCTTATCCAGGATGTGCATCTTAACAAGTGGAGAATTACTAAGGTCAGAGATTCAAACTTGGAGTaGAACATTAAGCAATTGGAA +
Preference number: 4 (lower is better)
Translates to: YGLIQDVHLNKWRITKVRDSNLE*NIKQLE
Trigger: TTCCAATTGCTTAATGTTCCACTCCAAGTTTGAATC...TCTGACCTTAGTAATTCTCCACTTGTTAAGATGCACATCCTGGATAAGACCATA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CCA 90 bp AACAAAACAGAACAGAACATGAGCATTCTCCTAGGCCACTCTGTTGTCATTTTTTTCCTGATTCAAACTTaGAGTGGAACATTAAGCAAT +
Preference number: 4 (lower is better)
Translates to: NKTEQNMSILLGHSVVIFFLIQT*SGTLSN
Trigger: ATTGCTTAATGTTCCACTCCAAGTTTGAATCAGGAA...AAAAATGACAACAGAGTGGCCTAGGAGAATGCTCATGTTCTGTTCTGTTTTGTT
37% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR CAA 72 bp CGTAATAAACCCATCATTAAAGTTTCCCACATATGTTaGTCCCCTTTGTCTATTTTTCTTGCGTTGACAGTT +
Preference number: 4 (lower is better)
Translates to: RNKPIIKVSHIC*SPLSIFLALTV
Trigger: AACTGTCAACGCAAGAAAAATAGACAAAGGGGACAAACATATGTGGGAAACTTTAATGATGGGTTTATTACG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
3UTR CAA 72 bp TGTGAGGAGTTCTGTTTCTTTAAAACATCCAGCTCGTaGTCATTTGATATAACAACTATCGTAATAAACCCA +
Preference number: 4 (lower is better)
Translates to: CEEFCFFKTSSS*SFDITTIVINP
Trigger: TGGGTTTATTACGATAGTTGTTATATCAAATGACAACGAGCTGGATGTTTTAAAGAAACAGAACTCCTCACA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS TCA 90 bp TCATCACCCAGCTGGCATTGCTCTCTCCTGGGTGAACTCGGGCTGTaGTCACCTGATATGGACGACAGCGGAACTGCTCCAGATGCTCGG +
Preference number: 5 (lower is better)
Translates to: SSPSWHCSLLGELGL*SPDMDDSGTAPDAR
Trigger: CCGAGCATCTGGAGCAGTTCCGCTGTCGTCCATATCAGGTGATCACAGCCCGAGTTCACCCAGGAGAGAGCAATGCCAGCTGGGTGATGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CCA 90 bp GACCCTGATAGGGGCCCTGGTTGCAGCCACAGTAGCTGCTCTCCATaGTATAGCTTCTGGAAACCCCCATCTCTCTCCACACCACCACTC +
Preference number: 5 (lower is better)
Translates to: DPDRGPGCSHSSCSP*YSFWKPPSLSTPPL
Trigger: GAGTGGTGGTGTGGAGAGAGATGGGGGTTTCCAGAAGCTATACCATGGAGAGCAGCTACTGTGGCTGCAACCAGGGCCCCTATCAGGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS-3UTR CAA 90 bp TTTCACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAGCGATCCAGCATGGGTaGAGCAGCGGGAGGTGGACA +
Preference number: 5 (lower is better)
Translates to: FHSKGVRQDSAWSFLPLAAIQHG*SSGRWT
Trigger: TGTCCACCTCCCGCTGCTCAACCCATGCTGGATCGC...TGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS CCA 90 bp GGTACACCGGACTTCCCTGTCTTCACCATGTGCAGAATGGACGAGTaGACTGTGTCTTCTCTTTCTTGTCTCCAGGAGCTGTGCTCCCGG +
Preference number: 5 (lower is better)
Translates to: GTPDFPVFTMCRMDE*TVSSLSCLQELCSR
Trigger: CCGGGAGCACAGCTCCTGGAGACAAGAAAGAGAAGACACAGTCCACTCGTCCATTCTGCACATGGTGAAGACAGGGAAGTCCGGTGTACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CCA 90 bp GGCATTGCTCTCTCCTGGGTGAACTCGGGCTGTGATCACCTGATATaGACGACAGCGGAACTGCTCCAGATGCTCGGTGCTGTTAGATTC +
Preference number: 5 (lower is better)
Translates to: GIALSWVNSGCDHLI*TTAELLQMLGAVRF
Trigger: GAATCTAACAGCACCGAGCATCTGGAGCAGTTCCGCTGTCGTCCATATCAGGTGATCACAGCCCGAGTTCACCCAGGAGAGAGCAATGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CCA 90 bp ATACCTGATAGGGGCCCTGGTTGCAGCCACAGTAGCTGCTCTCCATaGTATAGCTTCTGGAAACCCCCATCTCTCTCCACACCACCACTC +
Preference number: 5 (lower is better)
Translates to: IPDRGPGCSHSSCSP*YSFWKPPSLSTPPL
Trigger: GAGTGGTGGTGTGGAGAGAGATGGGGGTTTCCAGAAGCTATACCATGGAGAGCAGCTACTGTGGCTGCAACCAGGGCCCCTATCAGGTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS CCA 90 bp TCCGGTCTGTGCCAACAGAAAGCAGATCGCCGAGGACTTGGAGGATaGACAGGGTGGATGCTTTATCAGAGGAGTTCTGGAGCGTGTGCA +
Preference number: 5 (lower is better)
Translates to: SGLCQQKADRRGLGG*TGWMLYQRSSGACA
Trigger: TGCACACGCTCCAGAACTCCTCTGATAAAGCATCCACCCTGTCCATCCTCCAAGTCCTCGGCGATCTGCTTTCTGTTGGCACAGACCGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS TCA 90 bp ACCATCATCGTCAAAATCTTCTTCAGTCAGATTGAGTGGGAGCTCTaGGCTGGTGCTCCCAGGGGCTGGGAAGGTATAGGCACTGCTGGC +
Preference number: 5 (lower is better)
Translates to: TIIVKIFFSQIEWEL*AGAPRGWEGIGTAG
Trigger: GCCAGCAGTGCCTATACCTTCCCAGCCCCTGGGAGCACCAGCTCAGAGCTCCCACTCAATCTGACTGAAGAAGATTTTGACGATGATGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS GCA 90 bp AACAGAAAGCAGATCGCCGAGGACTTGGAGGATGGACAGGGTGGATaGTTTATCAGAGGAGTTCTGGAGCGTGTGCAGCAGCATCTGCAG +
Preference number: 5 (lower is better)
Translates to: NRKQIAEDLEDGQGG*FIRGVLERVQQHLQ
Trigger: CTGCAGATGCTGCTGCACACGCTCCAGAACTCCTCTGATAAAGCATCCACCCTGTCCATCCTCCAAGTCCTCGGCGATCTGCTTTCTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS GCA 90 bp GCTCATCATCTACCTCAGAGGTTCTGTTGCTGCTGTTGCTGCTGCTaGTACTGCACCGCTGGAGGTAGTGTTCCAGAACATCCGCGTTCA +
Preference number: 5 (lower is better)
Translates to: AHHLPQRFCCCCCCC*YCTAGGSVPEHPRS
Trigger: TGAACGCGGATGTTCTGGAACACTACCTCCAGCGGTGCAGTAGCAGCAGCAGCAACAGCAGCAACAGAACCTCTGAGGTAGATGATGAGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS CCA 90 bp TGCCAACAGAAAGCAGATCGCCGAGGACTTGGAGGATGGACAGGGTaGATGCTTTATCAGAGGAGTTCTGGAGCGTGTGCAGCAGCATCT +
Preference number: 5 (lower is better)
Translates to: CQQKADRRGLGGWTG*MLYQRSSGACAAAS
Trigger: AGATGCTGCTGCACACGCTCCAGAACTCCTCTGATAAAGCATCCACCCTGTCCATCCTCCAAGTCCTCGGCGATCTGCTTTCTGTTGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS-3UTR CAA 90 bp AGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAAGATGGTTGGAGATGAGCTaGGGGAGAGAGCCACTGTCT +
Preference number: 5 (lower is better)
Translates to: RSEAGLSLELFAPCKGERWLEMS*GREPLS
Trigger: AGACAGTGGCTCTCTCCCCAAGCTCATCTCCAACCA...TCTTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS TCA 90 bp AACCCCCATCTCTCTCCACACCACCACTCGGGCAGTGGAAGCTCGTaGTTTTTCAACCAGAAAGCTGCAGCTGTTCATGGTGAATGCTGG +
Preference number: 5 (lower is better)
Translates to: NPHLSPHHHSGSGSS*FFNQKAAAVHGECW
Trigger: CCAGCATTCACCATGAACAGCTGCAGCTTTCTGGTTGAAAAATCACGAGCTTCCACTGCCCGAGTGGTGGTGTGGAGAGAGATGGGGGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS GCA 90 bp GCCTCTATTCACTGCCCTGCGGCAGTTAGACTTGGATTTCAGCAATaGTGCCAAAACTTCAGTGGCTGCCCTGATTGTCCGGGTGTGCTT +
Preference number: 5 (lower is better)
Translates to: ASIHCPAAVRLGFQQ*CQNFSGCPDCPGVL
Trigger: AAGCACACCCGGACAATCAGGGCAGCCACTGAAGTTTTGGCAGCATTGCTGAAATCCAAGTCTAACTGCCGCAGGGCAGTGAATAGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS-3UTR CAA 90 bp CAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGATCTTCTTCAGTCAGATaGAGTGGGAGCTCTGAGCTG +
Preference number: 5 (lower is better)
Translates to: QQRSEAGLSLELFAPCKGSSSVR*SGSSEL
Trigger: CAGCTCAGAGCTCCCACTCAATCTGACTGAAGAAGA...TCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS TCA 90 bp CTCCTGGATCTGCCGGTCCAGTTCAGTGAAGTTCTGTTCTGCGTCTaGGCTGCTGTCAGCACTGTAGTCAATCTCCTCCATGCAATATGG +
Preference number: 5 (lower is better)
Translates to: LLDLPVQFSEVLFCV*AAVSTVVNLLHAIW
Trigger: CCATATTGCATGGAGGAGATTGACTACAGTGCTGACAGCAGCTCAGACGCAGAACAGAACTTCACTGAACTGGACCGGCAGATCCAGGAG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS TCA 90 bp CATCCTTGTTCAAGGCACACTCCTGGATCTGCCGGTCCAGTTCAGTaGAGTTCTGTTCTGCGTCTGAGCTGCTGTCAGCACTGTAGTCAA +
Preference number: 5 (lower is better)
Translates to: HPCSRHTPGSAGPVQ*SSVLRLSCCQHCSQ
Trigger: TTGACTACAGTGCTGACAGCAGCTCAGACGCAGAACAGAACTTCACTGAACTGGACCGGCAGATCCAGGAGTGTGCCTTGAACAAGGATG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS CCA 90 bp AGGATGACGGTACACCGGACTTCCCTGTCTTCACCATGTGCAGAATaGACGAGTGGACTGTGTCTTCTCTTTCTTGTCTCCAGGAGCTGT +
Preference number: 5 (lower is better)
Translates to: RMTVHRTSLSSPCAE*TSGLCLLFLVSRSC
Trigger: ACAGCTCCTGGAGACAAGAAAGAGAAGACACAGTCCACTCGTCCATTCTGCACATGGTGAAGACAGGGAAGTCCGGTGTACCGTCATCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS-3UTR CAA 90 bp CAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGACCGGTTAAAACAGTGTaGCCTGAGAGAAGCAACACT +
Preference number: 5 (lower is better)
Translates to: QQRSEAGLSLELFAPCKGPVKTV*PERSNT
Trigger: AGTGTTGCTTCTCTCAGGCAACACTGTTTTAACCGG...TCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CAA 90 bp CAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGATTGCAGATCTTTGTTTaGAGGATGACGGTACACCGG +
Preference number: 5 (lower is better)
Translates to: QQRSEAGLSLELFAPCKGLQIFV*RMTVHR
Trigger: CCGGTGTACCGTCATCCTCAAAACAAAGATCTGCAA...TCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CAA 90 bp CACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGCTCAAACTCACGCACTaGGATGGCTTTACGGAGATT +
Preference number: 5 (lower is better)
Translates to: HSKGVRQDSAWSFLPLARLKLTH*DGFTEI
Trigger: AATCTCCGTAAAGCCATCCAAGTGCGTGAGTTTGAG...CCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CAA 90 bp TCACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGATTCCCTCCCAACGTTaGGCAGAGAACATCATGTCG +
Preference number: 5 (lower is better)
Translates to: SQQRSEAGLSLELFAPCKIPSQR*AENIMS
Trigger: CGACATGATGTTCTCTGCCAAACGTTGGGAGGGAAT...CTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CAA 90 bp AGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGATGACACCATCTGGGTaGAGCATAGGGATGATCTTG +
Preference number: 5 (lower is better)
Translates to: SKGVRQDSAWSFLPLAREMTPSG*SIGMIL
Trigger: CAAGATCATCCCTATGCTCAACCCAGATGGTGTCAT...CTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS TCA 90 bp ATGCTGGTGCTAGCTTGTCCAGGATTTTTGGAAGTGTCCTGTAGCTaGCATCCTCCAAGAGGGCAGATTCACCCACAGTACAGCCTGCTT +
Preference number: 5 (lower is better)
Translates to: MLVLACPGFLEVSCS*HPPRGQIHPQYSLL
Trigger: AAGCAGGCTGTACTGTGGGTGAATCTGCCCTCTTGGAGGATGTCAGCTACAGGACACTTCCAAAAATCCTGGACAAGCTAGCACCAGCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS TCA 90 bp CTGTGTCCACCAGAGTCTGCAGAAGGGCCTCGCTGCCACCTTTGCTaGTCATATAATAAATCCTCCGGTCTGTGCCAACAGAAAGCAGAT +
Preference number: 5 (lower is better)
Translates to: LCPPESAEGPRCHLC*SYNKSSGLCQQKAD
Trigger: ATCTGCTTTCTGTTGGCACAGACCGGAGGATTTATTATATGATCAGCAAAGGTGGCAGCGAGGCCCTTCTGCAGACTCTGGTGGACACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS GCA 90 bp GTCCTGATGCAGCCTGAGCAAGCTGTTGACATAGCCTCTATTCACTaGCCTGCGGCAGTTAGACTTGGATTTCAGCAATGCTGCCAAAAC +
Preference number: 5 (lower is better)
Translates to: VLMQPEQAVDIASIH*PAAVRLGFQQCCQN
Trigger: GTTTTGGCAGCATTGCTGAAATCCAAGTCTAACTGCCGCAGGGCAGTGAATAGAGGCTATGTCAACAGCTTGCTCAGGCTGCATCAGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS-3UTR CAA 90 bp CAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAATGGAAAGGTATGTGCTaGGCATGTGTGTGCAGAAGT +
Preference number: 5 (lower is better)
Translates to: QRSEAGLSLELFAPCKGEWKGMC*ACVCRS
Trigger: ACTTCTGCACACACATGCCAAGCACATACCTTTCCA...TTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CAA 90 bp CACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGGAAATGCCATTGTCTaGAATCCCACAGCAGATCTT +
Preference number: 5 (lower is better)
Translates to: HSKGVRQDSAWSFLPLARGNAIV*NPTADL
Trigger: AAGATCTGCTGTGGGATTCAAGACAATGGCATTTCC...CCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CAA 90 bp TTCACAGCTATTTTGAGTCCCATGAGTGCTGAAGTATCTTTGAACCTGGAAGTGGCGATCCAGCATGGGTaGAGCAGCGGGAGGTGGACA +
Preference number: 5 (lower is better)
Translates to: FTAILSPMSAEVSLNLEVAIQHG*SSGRWT
Trigger: TGTCCACCTCCCGCTGCTCAACCCATGCTGGATCGC...CACTTCCAGGTTCAAAGATACTTCAGCACTCATGGGACTCAAAATAGCTGTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CAA 90 bp GTGATGAATGCCCTTAGAAGAGGGGAGTCCAGACCACAAGGCCCCAAGCTCAGACTATTCACGTCGGCATaGACCAACAAGTCATACTCA +
Preference number: 5 (lower is better)
Translates to: VMNALRRGESRPQGPKLRLFTSA*TNKSYS
Trigger: TGAGTATGACTTGTTGGTCAATGCCGACGTGAATAG...TCTGAGCTTGGGGCCTTGTGGTCTGGACTCCCCTCTTCTAAGGGCATTCATCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CAA 90 bp AGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAGCATAGGGATGATCTaGAACACGAAGTTTTCCCTC +
Preference number: 5 (lower is better)
Translates to: SKGVRQDSAWSFLPLARESIGMI*NTKFSL
Trigger: GAGGGAAAACTTCGTGTTCAAGATCATCCCTATGCT...CTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS GCA 90 bp TGTTTTGAGGATGACGGTACACCGGACTTCCCTGTCTTCACCATGTaGAGAATGGACGAGTGGACTGTGTCTTCTCTTTCTTGTCTCCAG +
Preference number: 5 (lower is better)
Translates to: CFEDDGTPDFPVFTM*RMDEWTVSSLSCLQ
Trigger: CTGGAGACAAGAAAGAGAAGACACAGTCCACTCGTCCATTCTGCACATGGTGAAGACAGGGAAGTCCGGTGTACCGTCATCCTCAAAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS GCA 90 bp GTTCTGCGTCTGAGCTGCTGTCAGCACTGTAGTCAATCTCCTCCATaGAATATGGCTCATCATCTACCTCAGAGGTTCTGTTGCTGCTGT +
Preference number: 5 (lower is better)
Translates to: VLRLSCCQHCSQSPP*NMAHHLPQRFCCCC
Trigger: ACAGCAGCAACAGAACCTCTGAGGTAGATGATGAGCCATATTGCATGGAGGAGATTGACTACAGTGCTGACAGCAGCTCAGACGCAGAAC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS CCA 90 bp GGTGCTGTTAGATTCAGGAAAGGCAGTGATTGTCACCAGCGGACATaGATTCCCTCCCAACGTTTGGCAGAGAACATCATGTCGGAAGTA +
Preference number: 5 (lower is better)
Translates to: GAVRFRKGSDCHQRT*IPSQRLAENIMSEV
Trigger: TACTTCCGACATGATGTTCTCTGCCAAACGTTGGGAGGGAATCCATGTCCGCTGGTGACAATCACTGCCTTTCCTGAATCTAACAGCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CCA 90 bp CCCAGAGACAGTGCAGGAGGTTCTGGCTGTGAGACAGGTTTTTCCTaGCCAAAATCAAGGTCACATCAAGCGCTTCTAATTCTAGTGCCT +
Preference number: 5 (lower is better)
Translates to: PRDSAGGSGCETGFS*PKSRSHQALLILVP
Trigger: AGGCACTAGAATTAGAAGCGCTTGATGTGACCTTGATTTTGGCCAGGAAAAACCTGTCTCACAGCCAGAACCTCCTGCACTGTCTCTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS-3UTR CAA 90 bp GTGATGAATGCCCTTAGAAGAGGGGAGTCCAGACCACAAGGCCCCAAGCTCAGAAAATCATCTCCACATTaGGGTTCCAGTTCCTCAAAG +
Preference number: 5 (lower is better)
Translates to: VMNALRRGESRPQGPKLRKSSPH*GSSSSK
Trigger: CTTTGAGGAACTGGAACCCAAATGTGGAGATGATTT...TCTGAGCTTGGGGCCTTGTGGTCTGGACTCCCCTCTTCTAAGGGCATTCATCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CAA 90 bp CACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGAAATCATCTCCACATTaGGGTTCCAGTTCCTCAAAG +
Preference number: 5 (lower is better)
Translates to: HSKGVRQDSAWSFLPLARKSSPH*GSSSSK
Trigger: CTTTGAGGAACTGGAACCCAAATGTGGAGATGATTT...CCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CAA 90 bp AGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGGCATGCAGAGTGTCTTaGTTGTTCAAATCATCTCCA +
Preference number: 5 (lower is better)
Translates to: SKGVRQDSAWSFLPLAREACRVS*LFKSSP
Trigger: TGGAGATGATTTGAACAACAAAGACACTCTGCATGC...CTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CAA 90 bp AAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAATCCTTGGACAAGAAATaGCTTCCATGTCCCAAGCAG +
Preference number: 5 (lower is better)
Translates to: KGVRQDSAWSFLPLAREKSLDKK*LPCPKQ
Trigger: CTGCTTGGGACATGGAAGCAATTTCTTGTCCAAGGA...TTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CAA 90 bp AGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAAGACTATTCACGTCGGCATaGACCAACAAGTCATACTCA +
Preference number: 5 (lower is better)
Translates to: RSEAGLSLELFAPCKGERLFTSA*TNKSYS
Trigger: TGAGTATGACTTGTTGGTCAATGCCGACGTGAATAG...TCTTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS GCA 90 bp TTCCTCAAAGCTACAGGACAGCTCAGGACACATTGCATCATACTGTaGAAGTTCCTCCTCAGGGAGGTCAAGACCAGGCTTAGAACTAAG +
Preference number: 5 (lower is better)
Translates to: FLKATGQLRTHCIIL*KFLLREVKTRLRTK
Trigger: CTTAGTTCTAAGCCTGGTCTTGACCTCCCTGAGGAGGAACTTGCACAGTATGATGCAATGTGTCCTGAGCTGTCCTGTAGCTTTGAGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS-3UTR CAA 90 bp TCACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGCTTAGAACTAAGTTaGCTCAGATCAGTTTCCAAG +
Preference number: 5 (lower is better)
Translates to: SQQRSEAGLSLELFAPCKGLELS*LRSVSK
Trigger: CTTGGAAACTGATCTGAGCAAACTTAGTTCTAAGCC...CTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CAA 90 bp CCCATGAGTGCTGAAGTATCTTTGAACCTGGAAGTGGGTAACCTGAACACAGTCATTCCCTCCCAACGTTaGGCAGAGAACATCATGTCG +
Preference number: 5 (lower is better)
Translates to: PMSAEVSLNLEVGNLNTVIPSQR*AENIMS
Trigger: CGACATGATGTTCTCTGCCAAACGTTGGGAGGGAAT...GACTGTGTTCAGGTTACCCACTTCCAGGTTCAAAGATACTTCAGCACTCATGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS CCA 90 bp GCTGTGCTCCCGGTTAAAACAGTGTTGCCTGAGAGAAGCAACACTTaGAATGTGGTGGTGATTGGCATGCAGAGTGTCTTTGTTGTTCAA +
Preference number: 5 (lower is better)
Translates to: AVLPVKTVLPERSNT*NVVVIGMQSVFVVQ
Trigger: TTGAACAACAAAGACACTCTGCATGCCAATCACCACCACATTCCAAGTGTTGCTTCTCTCAGGCAACACTGTTTTAACCGGGAGCACAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS-3UTR CAA 90 bp AGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAAGAATGAAGCAGTTATCCTaGGACAAGAAATTGCTTCCA +
Preference number: 5 (lower is better)
Translates to: RSEAGLSLELFAPCKGERMKQLS*DKKLLP
Trigger: TGGAAGCAATTTCTTGTCCAAGGATAACTGCTTCAT...TCTTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CAA 90 bp TTTCACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCATCTGGCTTGGTAGAATaGGGAAATGAAGCAGTTATC +
Preference number: 5 (lower is better)
Translates to: FHSKGVRQDSAWSFLPLASGLVE*GNEAVI
Trigger: GATAACTGCTTCATTTCCCAATTCTACCAAGCCAGA...TGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CAA 90 bp TCACAGCAAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGATGCTTTCTTCTGGCTaGGTAGAATTGGGAAATGAA +
Preference number: 5 (lower is better)
Translates to: SQQRSEAGLSLELFAPCKMLSSG*VELGNE
Trigger: TTCATTTCCCAATTCTACCAAGCCAGAAGAAAGCAT...CTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTTGCTGTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CAA 90 bp CCCAAGGGAAACACTATGTGTTGTTCATCTCTTGAAAGTGGAGTGCAGGGCTCATGGAAAGGTATGTGCTaGGCATGTGTGTGCAGAAGT +
Preference number: 5 (lower is better)
Translates to: PKGNTMCCSSLESGVQGSWKGMC*ACVCRS
Trigger: ACTTCTGCACACACATGCCAAGCACATACCTTTCCA...TGAGCCCTGCACTCCACTTTCAAGAGATGAACAACACATAGTGTTTCCCTTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CAA 90 bp CCCATGAGTGCTGAAGTATCTTTGAACCTGGAAGTGGGTAACCTGAACACAGTCATGACACCATCTGGGTaGAGCATAGGGATGATCTTG +
Preference number: 5 (lower is better)
Translates to: PMSAEVSLNLEVGNLNTVMTPSG*SIGMIL
Trigger: CAAGATCATCCCTATGCTCAACCCAGATGGTGTCAT...GACTGTGTTCAGGTTACCCACTTCCAGGTTCAAAGATACTTCAGCACTCATGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CAA 90 bp AAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAATGGAACATTAAGCAATaGGAAATGCTGCCTTGCAAA +
Preference number: 5 (lower is better)
Translates to: KGVRQDSAWSFLPLAREKWNIKQ*EMLPCK
Trigger: TTTGCAAGGCAGCATTTCCAATTGCTTAATGTTCCA...TTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS TCA 90 bp TTTCCCTGTGGTCGATGCTTCTTTCCAGAATTTCAAGATGAGTCATaGGGGTGGAATATGTGTAGGGATAGTGATAGGCCAGATAGCAGG +
Preference number: 5 (lower is better)
Translates to: FPCGRCFFPEFQDES*GWNMCRDSDRPDSR
Trigger: CCTGCTATCTGGCCTATCACTATCCCTACACATATTCCACCCTCATGACTCATCTTGAAATTCTGGAAAGAAGCATCGACCACAGGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS-3UTR CAA 90 bp AAAGGAGTGAGGCAGGACTCAGCTTGGAGCTTTTTGCCCCTTGCAAGGGAGAAAGGCTTTGATTCACATTaGTTGCAGATCTTTGTTTTG +
Preference number: 5 (lower is better)
Translates to: KGVRQDSAWSFLPLAREKGFDSH*LQIFVL
Trigger: CAAAACAAAGATCTGCAACAAATGTGAATCAAAGCC...TTTCTCCCTTGCAAGGGGCAAAAAGCTCCAAGCTGAGTCCTGCCTCACTCCTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107442.3
CDS-3UTR CAA 90 bp CCCAAGGGAAACACTATGTGTTGTTCATCTCTTGAAAGTGGAGTGCAGGGCTCATCTGGCTTGGTAGAATaGGGAAATGAAGCAGTTATC +
Preference number: 5 (lower is better)
Translates to: PKGNTMCCSSLESGVQGSSGLVE*GNEAVI
Trigger: GATAACTGCTTCATTTCCCAATTCTACCAAGCCAGA...TGAGCCCTGCACTCCACTTTCAAGAGATGAACAACACATAGTGTTTCCCTTGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CAA 90 bp AACAAAACAGAACAGAACATGAGCATTCTCCTAGGCCACTCTGTTGTCATTTTTTGGTTGGAGATGAGCTaGGGGAGAGAGCCACTGTCT +
Preference number: 5 (lower is better)
Translates to: NKTEQNMSILLGHSVVIFWLEMS*GREPLS
Trigger: AGACAGTGGCTCTCTCCCCAAGCTCATCTCCAACCA...AAAAATGACAACAGAGTGGCCTAGGAGAATGCTCATGTTCTGTTCTGTTTTGTT
46% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CAA 90 bp TTCTACTATATCCACTTGAATGGCCCAAGGGAAACACTATGTGTTGTTCATCTCTCTTCTTCAGTCAGATaGAGTGGGAGCTCTGAGCTG +
Preference number: 5 (lower is better)
Translates to: FYYIHLNGPRETLCVVHLSSSVR*SGSSEL
Trigger: CAGCTCAGAGCTCCCACTCAATCTGACTGAAGAAGA...GAGATGAACAACACATAGTGTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CAA 90 bp TACCCCAGCACCAAAACCACAGCAGAACTGAATCTCTATTCTACTATATCCACTCCGGTTAAAACAGTGTaGCCTGAGAGAAGCAACACT +
Preference number: 5 (lower is better)
Translates to: YPSTKTTAELNLYSTISTPVKTV*PERSNT
Trigger: AGTGTTGCTTCTCTCAGGCAACACTGTTTTAACCGG...AGTGGATATAGTAGAATAGAGATTCAGTTCTGCTGTGGTTTTGGTGCTGGGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CAA 90 bp AATATATGTTGCAACTCTAATCCCTGGAGCCTGGGAATATGGTCTTATCCAGGATTGCAGATCTTTGTTTaGAGGATGACGGTACACCGG +
Preference number: 5 (lower is better)
Translates to: NICCNSNPWSLGIWSYPGLQIFV*RMTVHR
Trigger: CCGGTGTACCGTCATCCTCAAAACAAAGATCTGCAA...TCCTGGATAAGACCATATTCCCAGGCTCCAGGGATTAGAGTTGCAACATATATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CAA 90 bp CCAGACCACAAGGCCCCAAGCTCAGATGGTCTTGTGAAGATGTTAAGTGATGAAATGCTTTCTTCTGGCTaGGTAGAATTGGGAAATGAA +
Preference number: 5 (lower is better)
Translates to: PDHKAPSSDGLVKMLSDEMLSSG*VELGNE
Trigger: TTCATTTCCCAATTCTACCAAGCCAGAAGAAAGCAT...TTCATCACTTAACATCTTCACAAGACCATCTGAGCTTGGGGCCTTGTGGTCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS CCA 90 bp GGCTCGTCTAAACTGAAGACAACTTTGTTTATAACATCACTTGGATaGAGGAGCCTCCGGATATCCTCAAGTATCTTGATCCTCTGTACT +
Preference number: 5 (lower is better)
Translates to: GSSKLKTTLFITSLG*RSLRISSSILILCT
Trigger: AGTACAGAGGATCAAGATACTTGAGGATATCCGGAGGCTCCTCCATCCAAGTGATGTTATAAACAAAGTTGTCTTCAGTTTAGACGAGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS-3UTR CAA 90 bp TTCACAGCTATTTTGAGTCCCATGAGTGCTGAAGTATCTTTGAACCTGGAAGTGGGAAATGCCATTGTCTaGAATCCCACAGCAGATCTT +
Preference number: 5 (lower is better)
Translates to: FTAILSPMSAEVSLNLEVGNAIV*NPTADL
Trigger: AAGATCTGCTGTGGGATTCAAGACAATGGCATTTCC...CACTTCCAGGTTCAAAGATACTTCAGCACTCATGGGACTCAAAATAGCTGTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CAA 90 bp TTCTACTATATCCACTTGAATGGCCCAAGGGAAACACTATGTGTTGTTCATCTCACAGCTCAGGACACATaGCATCATACTGTGCAAGTT +
Preference number: 5 (lower is better)
Translates to: FYYIHLNGPRETLCVVHLTAQDT*HHTVQV
Trigger: AACTTGCACAGTATGATGCAATGTGTCCTGAGCTGT...GAGATGAACAACACATAGTGTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CAA 90 bp TTCACAGCTATTTTGAGTCCCATGAGTGCTGAAGTATCTTTGAACCTGGAAGTGGCATGCAGAGTGTCTTaGTTGTTCAAATCATCTCCA +
Preference number: 5 (lower is better)
Translates to: FTAILSPMSAEVSLNLEVACRVS*LFKSSP
Trigger: TGGAGATGATTTGAACAACAAAGACACTCTGCATGC...CACTTCCAGGTTCAAAGATACTTCAGCACTCATGGGACTCAAAATAGCTGTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CAA 90 bp GTACTTGGGACTGGAAAGGAAATCCTATATATGAAGCAACCTAGAAAAGTGCTATCCTTGGACAAGAAATaGCTTCCATGTCCCAAGCAG +
Preference number: 5 (lower is better)
Translates to: VLGTGKEILYMKQPRKVLSLDKK*LPCPKQ
Trigger: CTGCTTGGGACATGGAAGCAATTTCTTGTCCAAGGA...TAGCACTTTTCTAGGTTGCTTCATATATAGGATTTCCTTTCCAGTCCCAAGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CAA 90 bp TCCCCTTTGTCTATTTTTCTTGCGTTGACAGTTGATGGGCTATCTCCTAGAGAGATGAAGCAGTTATCCTaGGACAAGAAATTGCTTCCA +
Preference number: 5 (lower is better)
Translates to: SPLSIFLALTVDGLSPREMKQLS*DKKLLP
Trigger: TGGAAGCAATTTCTTGTCCAAGGATAACTGCTTCAT...CTCTCTAGGAGATAGCCCATCAACTGTCAACGCAAGAAAAATAGACAAAGGGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CAA 90 bp AACAAAACAGAACAGAACATGAGCATTCTCCTAGGCCACTCTGTTGTCATTTTTCTCAAACTCACGCACTaGGATGGCTTTACGGAGATT +
Preference number: 5 (lower is better)
Translates to: NKTEQNMSILLGHSVVIFLKLTH*DGFTEI
Trigger: AATCTCCGTAAAGCCATCCAAGTGCGTGAGTTTGAG...AAAAATGACAACAGAGTGGCCTAGGAGAATGCTCATGTTCTGTTCTGTTTTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CAA 90 bp TTCTACTATATCCACTTGAATGGCCCAAGGGAAACACTATGTGTTGTTCATCTCAGCATAGGGATGATCTaGAACACGAAGTTTTCCCTC +
Preference number: 5 (lower is better)
Translates to: FYYIHLNGPRETLCVVHLSIGMI*NTKFSL
Trigger: GAGGGAAAACTTCGTGTTCAAGATCATCCCTATGCT...GAGATGAACAACACATAGTGTTTCCCTTGGGCCATTCAAGTGGATATAGTAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS GCA 90 bp GATTCAAACTTGGAGTGGAACATTAAGCAATTGGAAATGCTGCCTTaGAAAGGCCTGGGCTCGTCTAAACTGAAGACAACTTTGTTTATA +
Preference number: 5 (lower is better)
Translates to: DSNLEWNIKQLEMLP*KGLGSSKLKTTLFI
Trigger: TATAAACAAAGTTGTCTTCAGTTTAGACGAGCCCAGGCCTTTGCAAGGCAGCATTTCCAATTGCTTAATGTTCCACTCCAAGTTTGAATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS-3UTR CAA 90 bp GTACTTGGGACTGGAAAGGAAATCCTATATATGAAGCAACCTAGAAAAGTGCTAGGCTTAGAACTAAGTTaGCTCAGATCAGTTTCCAAG +
Preference number: 5 (lower is better)
Translates to: VLGTGKEILYMKQPRKVLGLELS*LRSVSK
Trigger: CTTGGAAACTGATCTGAGCAAACTTAGTTCTAAGCC...TAGCACTTTTCTAGGTTGCTTCATATATAGGATTTCCTTTCCAGTCCCAAGTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS TCA 90 bp TCATGTCCAGAAGAATCGATCTCCAAACCATTTTGTTGTAGGCTTTaGTTCACATTTGTTGCAGATCTTTGTTTTGAGGATGACGGTACA +
Preference number: 5 (lower is better)
Translates to: SCPEESISKPFCCRL*FTFVADLCFEDDGT
Trigger: TGTACCGTCATCCTCAAAACAAAGATCTGCAACAAATGTGAATCAAAGCCTACAACAAAATGGTTTGGAGATCGATTCTTCTGGACATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS-3UTR CAA 90 bp AACAAAACAGAACAGAACATGAGCATTCTCCTAGGCCACTCTGTTGTCATTTTTGGCTTTGATTCACATTaGTTGCAGATCTTTGTTTTG +
Preference number: 5 (lower is better)
Translates to: NKTEQNMSILLGHSVVIFGFDSH*LQIFVL
Trigger: CAAAACAAAGATCTGCAACAAATGTGAATCAAAGCC...AAAAATGACAACAGAGTGGCCTAGGAGAATGCTCATGTTCTGTTCTGTTTTGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS-3UTR CAA 90 bp ATTACTAAGGTCAGACTGAATAAATGTCCTAACACAGTGATGAATGCCCTTAGATGGAACATTAAGCAATaGGAAATGCTGCCTTGCAAA +
Preference number: 5 (lower is better)
Translates to: ITKVRLNKCPNTVMNALRWNIKQ*EMLPCK
Trigger: TTTGCAAGGCAGCATTTCCAATTGCTTAATGTTCCA...TCTAAGGGCATTCATCACTGTGTTAGGACATTTATTCAGTCTGACCTTAGTAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026854.10
CDS CCA 72 bp CAGGTCTGTGCAATGCTGAAGAGAGTCTCCATGCCTTaGGCTGCCAAGAAGGCCTCCCTGCCAGAGCGGAGG +
Preference number: 6 (lower is better)
Translates to: QVCAMLKRVSMP*AAKKASLPERR
Trigger: CCTCCGCTCTGGCAGGGAGGCCTTCTTGGCAGCCCAAGGCATGGAGACTCTCTTCAGCATTGCACAGACCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS CCA 72 bp CTCTCCTGGGTGAACTCGGGCTGTGATCACCTGATATaGACGACAGCGGAACTGCTCCAGATGCTCGGTGCT +
Preference number: 6 (lower is better)
Translates to: LSWVNSGCDHLI*TTAELLQMLGA
Trigger: AGCACCGAGCATCTGGAGCAGTTCCGCTGTCGTCCATATCAGGTGATCACAGCCCGAGTTCACCCAGGAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CCA 72 bp AGGGGCCCTGGTTGCAGCCACAGTAGCTGCTCTCCATaGTATAGCTTCTGGAAACCCCCATCTCTCTCCACA +
Preference number: 6 (lower is better)
Translates to: RGPGCSHSSCSP*YSFWKPPSLST
Trigger: TGTGGAGAGAGATGGGGGTTTCCAGAAGCTATACCATGGAGAGCAGCTACTGTGGCTGCAACCAGGGCCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CCA 72 bp AGGATGGACAGGGTGGATGCTTTATCAGAGGAGTTCTaGAGCGTGTGCAGCAGCATCTGCAGGCCACTGCCT +
Preference number: 6 (lower is better)
Translates to: RMDRVDALSEEF*SVCSSICRPLP
Trigger: AGGCAGTGGCCTGCAGATGCTGCTGCACACGCTCCAGAACTCCTCTGATAAAGCATCCACCCTGTCCATCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS TCA 72 bp AGTGATAAGGGACAGCGGCCCTCATGCCGCTCACCTTaGAGTAGAACCACTGCTGGTGCTGGGAGCTATTCA +
Preference number: 6 (lower is better)
Translates to: SDKGQRPSCRSP*SRTTAGAGSYS
Trigger: TGAATAGCTCCCAGCACCAGCAGTGGTTCTACTTCAAGGTGAGCGGCATGAGGGCCGCTGTCCCTTATCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS TCA 72 bp AGTTTTCCCTCAGGAGCTTTGCCACGGGGTCACTGCTaGCTAGGAACTCCAAGGTTCCCTTCATCACCCAGC +
Preference number: 6 (lower is better)
Translates to: SFPSGALPRGHC*LGTPRFPSSPS
Trigger: GCTGGGTGATGAAGGGAACCTTGGAGTTCCTAGTCAGCAGTGACCCCGTGGCAAAGCTCCTGAGGGAAAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS TCA 72 bp TCAAGGCACACTCCTGGATCTGCCGGTCCAGTTCAGTaGAGTTCTGTTCTGCGTCTGAGCTGCTGTCAGCAC +
Preference number: 6 (lower is better)
Translates to: SRHTPGSAGPVQ*SSVLRLSCCQH
Trigger: GTGCTGACAGCAGCTCAGACGCAGAACAGAACTTCACTGAACTGGACCGGCAGATCCAGGAGTGTGCCTTGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS CAA 72 bp CCGGTCTGTGCCAACAGAAAGCAGATCGCCGAGGACTaGGAGGATGGACAGGGTGGATGCTTTATCAGAGGA +
Preference number: 6 (lower is better)
Translates to: PVCANRKQIAED*EDGQGGCFIRG
Trigger: TCCTCTGATAAAGCATCCACCCTGTCCATCCTCCAAGTCCTCGGCGATCTGCTTTCTGTTGGCACAGACCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS TCA 72 bp GTTGGAGATGAGCTTGGGGAGAGAGCCACTGTCTGTTaGGATCCTCGCCTCTCAGTGAGCATCTGTGATTGC +
Preference number: 6 (lower is better)
Translates to: VGDELGERATVC*DPRLSVSICDC
Trigger: GCAATCACAGATGCTCACTGAGAGGCGAGGATCTCAACAGACAGTGGCTCTCTCCCCAAGCTCATCTCCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS GCA 72 bp AGGGTGGATGCTTTATCAGAGGAGTTCTGGAGCGTGTaGAGCAGCATCTGCAGGCCACTGCCTTCTTGTTCA +
Preference number: 6 (lower is better)
Translates to: RVDALSEEFWSV*SSICRPLPSCS
Trigger: TGAACAAGAAGGCAGTGGCCTGCAGATGCTGCTGCACACGCTCCAGAACTCCTCTGATAAAGCATCCACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS GCA 72 bp TCAGGAGAAGATGACCTTGCTGTGTCCACCAGAGTCTaGAGAAGGGCCTCGCTGCCACCTTTGCTGATCATA +
Preference number: 6 (lower is better)
Translates to: SGEDDLAVSTRV*RRASLPPLLII
Trigger: TATGATCAGCAAAGGTGGCAGCGAGGCCCTTCTGCAGACTCTGGTGGACACAGCAAGGTCATCTTCTCCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS CCA 72 bp AAACCCCCATCTCTCTCCACACCACCACTCGGGCAGTaGAAGCTCGTGATTTTTCAACCAGAAAGCTGCAGC +
Preference number: 6 (lower is better)
Translates to: KPPSLSTPPLGQ*KLVIFQPESCS
Trigger: GCTGCAGCTTTCTGGTTGAAAAATCACGAGCTTCCACTGCCCGAGTGGTGGTGTGGAGAGAGATGGGGGTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS TCA 72 bp CTCTCTCCACACCACCACTCGGGCAGTGGAAGCTCGTaGTTTTTCAACCAGAAAGCTGCAGCTGTTCATGGT +
Preference number: 6 (lower is better)
Translates to: LSPHHHSGSGSS*FFNQKAAAVHG
Trigger: ACCATGAACAGCTGCAGCTTTCTGGTTGAAAAATCACGAGCTTCCACTGCCCGAGTGGTGGTGTGGAGAGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS TCA 72 bp CTGCCGGTCCAGTTCAGTGAAGTTCTGTTCTGCGTCTaGGCTGCTGTCAGCACTGTAGTCAATCTCCTCCAT +
Preference number: 6 (lower is better)
Translates to: LPVQFSEVLFCV*AAVSTVVNLLH
Trigger: ATGGAGGAGATTGACTACAGTGCTGACAGCAGCTCAGACGCAGAACAGAACTTCACTGAACTGGACCGGCAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS GCA 72 bp GCTACAGGACAGCTCAGGACACATTGCATCATACTGTaGAAGTTCCTCCTCAGGGAGGTCAAGACCAGGCTT +
Preference number: 6 (lower is better)
Translates to: ATGQLRTHCIIL*KFLLREVKTRL
Trigger: AAGCCTGGTCTTGACCTCCCTGAGGAGGAACTTGCACAGTATGATGCAATGTGTCCTGAGCTGTCCTGTAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS GCA 72 bp AGCGGGAGGTGGACAGTGGCCCCAGAGATCAGGAAATaGCATTGTCTTGAATCCCACAGCAGATCTTGTTCT +
Preference number: 6 (lower is better)
Translates to: SGRWTVAPEIRK*HCLESHSRSCS
Trigger: AGAACAAGATCTGCTGTGGGATTCAAGACAATGGCATTTCCTGATCTCTGGGGCCACTGTCCACCTCCCGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CCA 72 bp TGCCAACAGAAAGCAGATCGCCGAGGACTTGGAGGATaGACAGGGTGGATGCTTTATCAGAGGAGTTCTGGA +
Preference number: 6 (lower is better)
Translates to: CQQKADRRGLGG*TGWMLYQRSSG
Trigger: TCCAGAACTCCTCTGATAAAGCATCCACCCTGTCCATCCTCCAAGTCCTCGGCGATCTGCTTTCTGTTGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS CAA 72 bp ACCTTTAGCATGGTAGATGGTTGGTTGGAGATGAGCTaGGGGAGAGAGCCACTGTCTGTTGAGATCCTCGCC +
Preference number: 6 (lower is better)
Translates to: TFSMVDGWLEMS*GREPLSVEILA
Trigger: GGCGAGGATCTCAACAGACAGTGGCTCTCTCCCCAAGCTCATCTCCAACCAACCATCTACCATGCTAAAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 90 bp ATAAATCCTCCGGTCTGTGCCAACAGAAAGCAGATCGCCGAGGACTaGGAGGATGGACAGGGTGGATGCTTTATCAGAGGAGTTCTGGAG +
Preference number: 6 (lower is better)
Translates to: INPPVCANRKQIAED*EDGQGGCFIRGVLE
Trigger: CTCCAGAACTCCTCTGATAAAGCATCCACCCTGTCCATCCTCCAAGTCCTCGGCGATCTGCTTTCTGTTGGCACAGACCGGAGGATTTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS CAA 90 bp CTTCACCATGTGCAGAATGGACGAGTGGACTGTGTCTTCTCTTTCTaGTCTCCAGGAGCTGTGCTCCCGGTTAAAACAGTGTTGCCTGAG +
Preference number: 6 (lower is better)
Translates to: LHHVQNGRVDCVFSF*SPGAVLPVKTVLPE
Trigger: CTCAGGCAACACTGTTTTAACCGGGAGCACAGCTCCTGGAGACAAGAAAGAGAAGACACAGTCCACTCGTCCATTCTGCACATGGTGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS TCA 72 bp ACCACTGCTGGTGCTGGGAGCTATTCACGTCGGCATTaGCCAACAAGTCATACTCAAACTCACGCACTTGGA +
Preference number: 6 (lower is better)
Translates to: TTAGAGSYSRRH*PTSHTQTHALG
Trigger: TCCAAGTGCGTGAGTTTGAGTATGACTTGTTGGTCAATGCCGACGTGAATAGCTCCCAGCACCAGCAGTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS TCA 72 bp AGAGAGCCACTGTCTGTTGAGATCCTCGCCTCTCAGTaGGCATCTGTGATTGCCATTGATGACACCATCTGG +
Preference number: 6 (lower is better)
Translates to: REPLSVEILASQ*ASVIAIDDTIW
Trigger: CCAGATGGTGTCATCAATGGCAATCACAGATGCTCACTGAGAGGCGAGGATCTCAACAGACAGTGGCTCTCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS GCA 72 bp GATGACGGTACACCGGACTTCCCTGTCTTCACCATGTaGAGAATGGACGAGTGGACTGTGTCTTCTCTTTCT +
Preference number: 6 (lower is better)
Translates to: DDGTPDFPVFTM*RMDEWTVSSLS
Trigger: AGAAAGAGAAGACACAGTCCACTCGTCCATTCTGCACATGGTGAAGACAGGGAAGTCCGGTGTACCGTCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CCA 72 bp GTACACCGGACTTCCCTGTCTTCACCATGTGCAGAATaGACGAGTGGACTGTGTCTTCTCTTTCTTGTCTCC +
Preference number: 6 (lower is better)
Translates to: VHRTSLSSPCAE*TSGLCLLFLVS
Trigger: GGAGACAAGAAAGAGAAGACACAGTCCACTCGTCCATTCTGCACATGGTGAAGACAGGGAAGTCCGGTGTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 72 bp TCATCACCATCATCGTCAAAATCTTCTTCAGTCAGATaGAGTGGGAGCTCTGAGCTGGTGCTCCCAGGGGCT +
Preference number: 6 (lower is better)
Translates to: SSPSSSKSSSVR*SGSSELVLPGA
Trigger: AGCCCCTGGGAGCACCAGCTCAGAGCTCCCACTCAATCTGACTGAAGAAGATTTTGACGATGATGGTGATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 72 bp TTGTCTCCAGGAGCTGTGCTCCCGGTTAAAACAGTGTaGCCTGAGAGAAGCAACACTTGGAATGTGGTGGTG +
Preference number: 6 (lower is better)
Translates to: LSPGAVLPVKTV*PERSNTWNVVV
Trigger: CACCACCACATTCCAAGTGTTGCTTCTCTCAGGCAACACTGTTTTAACCGGGAGCACAGCTCCTGGAGACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 72 bp AACCACTGCTGGTGCTGGGAGCTATTCACGTCGGCATaGACCAACAAGTCATACTCAAACTCACGCACTTGG +
Preference number: 6 (lower is better)
Translates to: NHCWCWELFTSA*TNKSYSNSRTW
Trigger: CCAAGTGCGTGAGTTTGAGTATGACTTGTTGGTCAATGCCGACGTGAATAGCTCCCAGCACCAGCAGTGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 90 bp AAAGGCAGTGATTGTCACCAGCGGACATGGATTCCCTCCCAACGTTaGGCAGAGAACATCATGTCGGAAGTAGATTTCCCTGTGGTCGAT +
Preference number: 6 (lower is better)
Translates to: KGSDCHQRTWIPSQR*AENIMSEVDFPVVD
Trigger: ATCGACCACAGGGAAATCTACTTCCGACATGATGTTCTCTGCCAAACGTTGGGAGGGAATCCATGTCCGCTGGTGACAATCACTGCCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS TCA 72 bp CTAGCTTGTCCAGGATTTTTGGAAGTGTCCTGTAGCTaGCATCCTCCAAGAGGGCAGATTCACCCACAGTAC +
Preference number: 6 (lower is better)
Translates to: LACPGFLEVSCS*HPPRGQIHPQY
Trigger: GTACTGTGGGTGAATCTGCCCTCTTGGAGGATGTCAGCTACAGGACACTTCCAAAAATCCTGGACAAGCTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS GCA 72 bp TGGACTGTGTCTTCTCTTTCTTGTCTCCAGGAGCTGTaGTCCCGGTTAAAACAGTGTTGCCTGAGAGAAGCA +
Preference number: 6 (lower is better)
Translates to: WTVSSLSCLQEL*SRLKQCCLREA
Trigger: TGCTTCTCTCAGGCAACACTGTTTTAACCGGGAGCACAGCTCCTGGAGACAAGAAAGAGAAGACACAGTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS GCA 72 bp TCTTCTTCATCCTTGTTCAAGGCACACTCCTGGATCTaGCGGTCCAGTTCAGTGAAGTTCTGTTCTGCGTCT +
Preference number: 6 (lower is better)
Translates to: SSSSLFKAHSWI*RSSSVKFCSAS
Trigger: AGACGCAGAACAGAACTTCACTGAACTGGACCGGCAGATCCAGGAGTGTGCCTTGAACAAGGATGAAGAAGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS CCA 72 bp AGATTCAGGAAAGGCAGTGATTGTCACCAGCGGACATaGATTCCCTCCCAACGTTTGGCAGAGAACATCATG +
Preference number: 6 (lower is better)
Translates to: RFRKGSDCHQRT*IPSQRLAENIM
Trigger: CATGATGTTCTCTGCCAAACGTTGGGAGGGAATCCATGTCCGCTGGTGACAATCACTGCCTTTCCTGAATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 72 bp GATTGTCACCAGCGGACATGGATTCCCTCCCAACGTTaGGCAGAGAACATCATGTCGGAAGTAGATTTCCCT +
Preference number: 6 (lower is better)
Translates to: DCHQRTWIPSQR*AENIMSEVDFP
Trigger: AGGGAAATCTACTTCCGACATGATGTTCTCTGCCAAACGTTGGGAGGGAATCCATGTCCGCTGGTGACAATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 72 bp GTAATGGAGGAGACCTTTAGCATGGTAGATGGTTGGTaGGAGATGAGCTTGGGGAGAGAGCCACTGTCTGTT +
Preference number: 6 (lower is better)
Translates to: VMEETFSMVDGW*EMSLGREPLSV
Trigger: AACAGACAGTGGCTCTCTCCCCAAGCTCATCTCCAACCAACCATCTACCATGCTAAAGGTCTCCTCCATTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 90 bp TTCTCTTTCTTGTCTCCAGGAGCTGTGCTCCCGGTTAAAACAGTGTaGCCTGAGAGAAGCAACACTTGGAATGTGGTGGTGATTGGCATG +
Preference number: 6 (lower is better)
Translates to: FSFLSPGAVLPVKTV*PERSNTWNVVVIGM
Trigger: CATGCCAATCACCACCACATTCCAAGTGTTGCTTCTCTCAGGCAACACTGTTTTAACCGGGAGCACAGCTCCTGGAGACAAGAAAGAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 90 bp TGTCTGAGGATCTGGATCACAGCAGAGATCACAAGTTCCATGTTCTaGTTCTCCAGGCAGGTCTGTGCAATGCTGAAGAGAGTCTCCATG +
Preference number: 6 (lower is better)
Translates to: CLRIWITAEITSSMF*FSRQVCAMLKRVSM
Trigger: CATGGAGACTCTCTTCAGCATTGCACAGACCTGCCTGGAGAACAAGAACATGGAACTTGTGATCTCTGCTGTGATCCAGATCCTCAGACA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS GCA 72 bp ATCCTCCAAGAGGGCAGATTCACCCACAGTACAGCCTaGTTGCCACAAAGTTTCTTTCATGCTGCAACCATA +
Preference number: 6 (lower is better)
Translates to: ILQEGRFTHSTA*LPQSFFHAATI
Trigger: TATGGTTGCAGCATGAAAGAAACTTTGTGGCAAGCAGGCTGTACTGTGGGTGAATCTGCCCTCTTGGAGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CCA 72 bp GCTGTCAGCACTGTAGTCAATCTCCTCCATGCAATATaGCTCATCATCTACCTCAGAGGTTCTGTTGCTGCT +
Preference number: 6 (lower is better)
Translates to: AVSTVVNLLHAI*LIIYLRGSVAA
Trigger: AGCAGCAACAGAACCTCTGAGGTAGATGATGAGCCATATTGCATGGAGGAGATTGACTACAGTGCTGACAGC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS CAA 72 bp TGCAAAGGCCTGGGCTCGTCTAAACTGAAGACAACTTaGTTTATAACATCACTTGGATGGAGGAGCCTCCGG +
Preference number: 6 (lower is better)
Translates to: CKGLGSSKLKTT*FITSLGWRSLR
Trigger: CCGGAGGCTCCTCCATCCAAGTGATGTTATAAACAAAGTTGTCTTCAGTTTAGACGAGCCCAGGCCTTTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 72 bp CTCCAAGAGGGCAGATTCACCCACAGTACAGCCTGCTaGCCACAAAGTTTCTTTCATGCTGCAACCATAAAG +
Preference number: 6 (lower is better)
Translates to: LQEGRFTHSTAC*PQSFFHAATIK
Trigger: CTTTATGGTTGCAGCATGAAAGAAACTTTGTGGCAAGCAGGCTGTACTGTGGGTGAATCTGCCCTCTTGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 90 bp ATGCTGCCTTGCAAAGGCCTGGGCTCGTCTAAACTGAAGACAACTTaGTTTATAACATCACTTGGATGGAGGAGCCTCCGGATATCCTCA +
Preference number: 6 (lower is better)
Translates to: MLPCKGLGSSKLKTT*FITSLGWRSLRISS
Trigger: TGAGGATATCCGGAGGCTCCTCCATCCAAGTGATGTTATAAACAAAGTTGTCTTCAGTTTAGACGAGCCCAGGCCTTTGCAAGGCAGCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 90 bp AGAGATGAAGCTCGAGCCAAGAGCTTATGGCTACAGTTTACAGATTaGAGTTCCAAGATGAGCAGTCCCAAGCAGTACATGGCTCCCATT +
Preference number: 6 (lower is better)
Translates to: RDEARAKSLWLQFTD*SSKMSSPKQYMAPI
Trigger: AATGGGAGCCATGTACTGCTTGGGACTGCTCATCTTGGAACTCAAATCTGTAAACTGTAGCCATAAGCTCTTGGCTCGAGCTTCATCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS GCA 72 bp AGGTATGTGCTTGGCATGTGTGTGCAGAAGTTTCTCTaGTGCTCCGATGCTTTCTTCTGGCTTGGTAGAATT +
Preference number: 6 (lower is better)
Translates to: RYVLGMCVQKFL*CSDAFFWLGRI
Trigger: AATTCTACCAAGCCAGAAGAAAGCATCGGAGCAGCAGAGAAACTTCTGCACACACATGCCAAGCACATACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CCA 72 bp AGTGCAGGAGGTTCTGGCTGTGAGACAGGTTTTTCCTaGCCAAAATCAAGGTCACATCAAGCGCTTCTAATT +
Preference number: 6 (lower is better)
Translates to: SAGGSGCETGFS*PKSRSHQALLI
Trigger: AATTAGAAGCGCTTGATGTGACCTTGATTTTGGCCAGGAAAAACCTGTCTCACAGCCAGAACCTCCTGCACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS CCA 72 bp GCGTTCAGCAGAGATGAAGCTCGAGCCAAGAGCTTATaGCTACAGTTTACAGATTTGAGTTCCAAGATGAGC +
Preference number: 6 (lower is better)
Translates to: AFSRDEARAKSL*LQFTDLSSKMS
Trigger: GCTCATCTTGGAACTCAAATCTGTAAACTGTAGCCATAAGCTCTTGGCTCGAGCTTCATCTCTGCTGAACGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS CAA 72 bp ATCTGGATCACAGCAGAGATCACAAGTTCCATGTTCTaGTTCTCCAGGCAGGTCTGTGCAATGCTGAAGAGA +
Preference number: 6 (lower is better)
Translates to: IWITAEITSSMF*FSRQVCAMLKR
Trigger: TCTCTTCAGCATTGCACAGACCTGCCTGGAGAACAAGAACATGGAACTTGTGATCTCTGCTGTGATCCAGAT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156166.8
CDS GCA 72 bp TTGGAGTGGAACATTAAGCAATTGGAAATGCTGCCTTaGAAAGGCCTGGGCTCGTCTAAACTGAAGACAACT +
Preference number: 6 (lower is better)
Translates to: LEWNIKQLEMLP*KGLGSSKLKTT
Trigger: AGTTGTCTTCAGTTTAGACGAGCCCAGGCCTTTGCAAGGCAGCATTTCCAATTGCTTAATGTTCCACTCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 72 bp TTTCCTGATTCAAACTTGGAGTGGAACATTAAGCAATaGGAAATGCTGCCTTGCAAAGGCCTGGGCTCGTCT +
Preference number: 6 (lower is better)
Translates to: FPDSNLEWNIKQ*EMLPCKGLGSS
Trigger: AGACGAGCCCAGGCCTTTGCAAGGCAGCATTTCCAATTGCTTAATGTTCCACTCCAAGTTTGAATCAGGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 90 bp TTACGGAGATTTCCTGATTCAAACTTGGAGTGGAACATTAAGCAATaGGAAATGCTGCCTTGCAAAGGCCTGGGCTCGTCTAAACTGAAG +
Preference number: 6 (lower is better)
Translates to: LRRFPDSNLEWNIKQ*EMLPCKGLGSSKLK
Trigger: CTTCAGTTTAGACGAGCCCAGGCCTTTGCAAGGCAGCATTTCCAATTGCTTAATGTTCCACTCCAAGTTTGAATCAGGAAATCTCCGTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 90 bp AACTCACGCACTTGGATGGCTTTACGGAGATTTCCTGATTCAAACTaGGAGTGGAACATTAAGCAATTGGAAATGCTGCCTTGCAAAGGC +
Preference number: 6 (lower is better)
Translates to: NSRTWMALRRFPDSN*EWNIKQLEMLPCKG
Trigger: GCCTTTGCAAGGCAGCATTTCCAATTGCTTAATGTTCCACTCCAAGTTTGAATCAGGAAATCTCCGTAAAGCCATCCAAGTGCGTGAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 72 bp GTAGGCTTTGATTCACATTTGTTGCAGATCTTTGTTTaGAGGATGACGGTACACCGGACTTCCCTGTCTTCA +
Preference number: 6 (lower is better)
Translates to: VGFDSHLLQIFV*RMTVHRTSLSS
Trigger: TGAAGACAGGGAAGTCCGGTGTACCGTCATCCTCAAAACAAAGATCTGCAACAAATGTGAATCAAAGCCTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 72 bp AGAAGTTTCTCTGCTGCTCCGATGCTTTCTTCTGGCTaGGTAGAATTGGGAAATGAAGCAGTTATCCTTGGA +
Preference number: 6 (lower is better)
Translates to: RSFSAAPMLSSG*VELGNEAVILG
Trigger: TCCAAGGATAACTGCTTCATTTCCCAATTCTACCAAGCCAGAAGAAAGCATCGGAGCAGCAGAGAAACTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 90 bp CATTTTGTTGTAGGCTTTGATTCACATTTGTTGCAGATCTTTGTTTaGAGGATGACGGTACACCGGACTTCCCTGTCTTCACCATGTGCA +
Preference number: 6 (lower is better)
Translates to: HFVVGFDSHLLQIFV*RMTVHRTSLSSPCA
Trigger: TGCACATGGTGAAGACAGGGAAGTCCGGTGTACCGTCATCCTCAAAACAAAGATCTGCAACAAATGTGAATCAAAGCCTACAACAAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 90 bp AGAAGTTTCTCTGCTGCTCCGATGCTTTCTTCTGGCTTGGTAGAATaGGGAAATGAAGCAGTTATCCTTGGACAAGAAATTGCTTCCATG +
Preference number: 6 (lower is better)
Translates to: RSFSAAPMLSSGLVE*GNEAVILGQEIASM
Trigger: CATGGAAGCAATTTCTTGTCCAAGGATAACTGCTTCATTTCCCAATTCTACCAAGCCAGAAGAAAGCATCGGAGCAGCAGAGAAACTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CCA 72 bp GCATTGACCAACAAGTCATACTCAAACTCACGCACTTaGATGGCTTTACGGAGATTTCCTGATTCAAACTTG +
Preference number: 6 (lower is better)
Translates to: ALTNKSYSNSRT*MALRRFPDSNL
Trigger: CAAGTTTGAATCAGGAAATCTCCGTAAAGCCATCCAAGTGCGTGAGTTTGAGTATGACTTGTTGGTCAATGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 72 bp TCTGCTGCTCCGATGCTTTCTTCTGGCTTGGTAGAATaGGGAAATGAAGCAGTTATCCTTGGACAAGAAATT +
Preference number: 6 (lower is better)
Translates to: SAAPMLSSGLVE*GNEAVILGQEI
Trigger: AATTTCTTGTCCAAGGATAACTGCTTCATTTCCCAATTCTACCAAGCCAGAAGAAAGCATCGGAGCAGCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS TCA 72 bp TCCGATGCTTTCTTCTGGCTTGGTAGAATTGGGAAATaGAGCAGTTATCCTTGGACAAGAAATTGCTTCCAT +
Preference number: 6 (lower is better)
Translates to: SDAFFWLGRIGK*SSYPWTRNCFH
Trigger: ATGGAAGCAATTTCTTGTCCAAGGATAACTGCTTCATTTCCCAATTCTACCAAGCCAGAAGAAAGCATCGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 72 bp CCAAACCATTTTGTTGTAGGCTTTGATTCACATTTGTaGCAGATCTTTGTTTTGAGGATGACGGTACACCGG +
Preference number: 6 (lower is better)
Translates to: PNHFVVGFDSHL*QIFVLRMTVHR
Trigger: CCGGTGTACCGTCATCCTCAAAACAAAGATCTGCAACAAATGTGAATCAAAGCCTACAACAAAATGGTTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 72 bp ACTTGGATGGCTTTACGGAGATTTCCTGATTCAAACTaGGAGTGGAACATTAAGCAATTGGAAATGCTGCCT +
Preference number: 6 (lower is better)
Translates to: TWMALRRFPDSN*EWNIKQLEMLP
Trigger: AGGCAGCATTTCCAATTGCTTAATGTTCCACTCCAAGTTTGAATCAGGAAATCTCCGTAAAGCCATCCAAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 90 bp AAGAATCGATCTCCAAACCATTTTGTTGTAGGCTTTGATTCACATTaGTTGCAGATCTTTGTTTTGAGGATGACGGTACACCGGACTTCC +
Preference number: 6 (lower is better)
Translates to: KNRSPNHFVVGFDSH*LQIFVLRMTVHRTS
Trigger: GGAAGTCCGGTGTACCGTCATCCTCAAAACAAAGATCTGCAACAAATGTGAATCAAAGCCTACAACAAAATGGTTTGGAGATCGATTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CCA 72 bp AAACTGAAGACAACTTTGTTTATAACATCACTTGGATaGAGGAGCCTCCGGATATCCTCAAGTATCTTGATC +
Preference number: 6 (lower is better)
Translates to: KLKTTLFITSLG*RSLRISSSILI
Trigger: GATCAAGATACTTGAGGATATCCGGAGGCTCCTCCATCCAAGTGATGTTATAAACAAAGTTGTCTTCAGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS CAA 72 bp TCTCCAAACCATTTTGTTGTAGGCTTTGATTCACATTaGTTGCAGATCTTTGTTTTGAGGATGACGGTACAC +
Preference number: 6 (lower is better)
Translates to: SPNHFVVGFDSH*LQIFVLRMTVH
Trigger: GTGTACCGTCATCCTCAAAACAAAGATCTGCAACAAATGTGAATCAAAGCCTACAACAAAATGGTTTGGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8
CDS TCA 72 bp GAAGAATCGATCTCCAAACCATTTTGTTGTAGGCTTTaGTTCACATTTGTTGCAGATCTTTGTTTTGAGGAT +
Preference number: 6 (lower is better)
Translates to: EESISKPFCCRL*FTFVADLCFED
Trigger: ATCCTCAAAACAAAGATCTGCAACAAATGTGAATCAAAGCCTACAACAAAATGGTTTGGAGATCGATTCTTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026854.10
ENSMUST00000107442.3
ENSMUST00000156166.8