RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AGAP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025422

Ensembl transcript IDs: ENSMUST00000039259.7, ENSMUST00000217941.2, ENSMUST00000239120.2

Found 482 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTAGAAAGTGCTCCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTaGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGC +
Preference number: 1 (lower is better)
Translates to: VESAPVGRGADWRGE*VHLSNGPPGVVVPG
Trigger: GCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGGAGCACTTTCTAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR GCA 90 bp GGGGCACAAGCCAGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTaGAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGG +
Preference number: 1 (lower is better)
Translates to: GAQASKSKHLGARNS*KGVPTYKHPAGRPR
Trigger: CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCTGGCTTGTGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR GCA 90 bp CCAGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTaGCCACCTACAAACACCCAGCAGGTAGACCCAGGGCAATCCAAG +
Preference number: 1 (lower is better)
Translates to: PASPNTLEPGTAARE*PPTNTQQVDPGQSK
Trigger: CTTGGATTGCCCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR GCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCGTCTCCTGGGAGGCGTaGGGGGCTGTGCCCTCGTGG +
Preference number: 2 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPVSWEA*GAVPSW
Trigger: CCACGAGGGCACAGCCCCGCACGCCTCCCAGGAGAC...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR GCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGGTCTCCTGGGAGGCGTaGGGGGCTGTGCCCTCGTGG +
Preference number: 2 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRVSWEA*GAVPSW
Trigger: CCACGAGGGCACAGCCCCGCACGCCTCCCAGGAGAC...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR CCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCACCCCAGGAGCCAGCCTaGGATTCGGCTCCCGCCACC +
Preference number: 2 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWAPQEPA*DSAPAT
Trigger: GGTGGCGGGAGCCGAATCCCAGGCTGGCTCCTGGGG...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR GCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCCTCTGGCGTGGAGTTaGCCCAGGAGCCAGCCTGGG +
Preference number: 2 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGPLAWS*PRSQPG
Trigger: CCCAGGCTGGCTCCTGGGGCAACTCCACGCCAGAGG...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR GCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGAGGCGTGCGGGGCTGTaGCCTCGTGGGGGTAGAAAG +
Preference number: 2 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGRRAGL*PRGGRK
Trigger: CTTTCTACCCCCACGAGGGCACAGCCCCGCACGCCT...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR GCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAAGGCGTGCGGGGCTGTaGCCTCGTGGGGGTAGAAAG +
Preference number: 2 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWARRAGL*PRGGRK
Trigger: CTTTCTACCCCCACGAGGGCACAGCCCCGCACGCCT...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR GCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAGTCTCCTGGGAGGCGTaGGGGGCTGTGCCCTCGTGG +
Preference number: 2 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTVSWEA*GAVPSW
Trigger: CCACGAGGGCACAGCCCCGCACGCCTCCCAGGAGAC...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR GCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCGAGCTAGGGTCTCCATaGCTCACTGGGGAGAGGGAG +
Preference number: 2 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTELGSP*LTGERE
Trigger: CTCCCTCTCCCCAGTGAGGCATGGAGACCCTAGCTC...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR GCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCGGAGAGGTGAGTGGGTaGATCTGTCCAACGGTCCAC +
Preference number: 2 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPGEVSG*ICPTVH
Trigger: GTGGACCGTTGGACAGATGCACCCACTCACCTCTCC...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR GCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGCCTCTGGCGTGGAGTTaGCCCAGGAGCCAGCCTGGG +
Preference number: 2 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQPLAWS*PRSQPG
Trigger: CCCAGGCTGGCTCCTGGGGCAACTCCACGCCAGAGG...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR GCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGGGAGAGGTGAGTGGGTaGATCTGTCCAACGGTCCAC +
Preference number: 2 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRGEVSG*ICPTVH
Trigger: GTGGACCGTTGGACAGATGCACCCACTCACCTCTCC...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR GCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGGGAGAGGTGAGTGGGTaGATCTGTCCAACGGTCCAC +
Preference number: 2 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGGEVSG*ICPTVH
Trigger: GTGGACCGTTGGACAGATGCACCCACTCACCTCTCC...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR CCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCGACTGGAGAGGTGAGTaGGTGCATCTGTCCAACGGT +
Preference number: 2 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTDWRGE*VHLSNG
Trigger: ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTC...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR CCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGGGGCGGGGTGCGGACTaGAGAGGTGAGTGGGTGCAT +
Preference number: 2 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQGRGAD*RGEWVH
Trigger: ATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCC...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR CCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGTTAGCATGGAAGGGGTaGGGTCCCCAAGTTGGTCCC +
Preference number: 2 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGLAWKG*GPQVGP
Trigger: GGGACCAACTTGGGGACCCCACCCCTTCCATGCTAA...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR CCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCTTTCACGGAAAGGGTTaGGGACCCCTCCACCTCCAT +
Preference number: 2 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTFHGKG*GPLHLH
Trigger: ATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAA...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR CCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCGCTCTCGGCTCCCCCTaGCTCTTTAGCTTCCATTCA +
Preference number: 2 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPALGSP*LFSFHS
Trigger: TGAATGGAAGCTAAAGAGCCAGGGGGAGCCGAGAGC...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR GCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAGAGCTAGGGTCTCCATaGCTCACTGGGGAGAGGGAG +
Preference number: 2 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTELGSP*LTGERE
Trigger: CTCCCTCTCCCCAGTGAGGCATGGAGACCCTAGCTC...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR CCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGGTCTCCATGCCTCACTaGGGAGAGGGAGGTGAGTTT +
Preference number: 2 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRVSMPH*GEGGEF
Trigger: AAACTCACCTCCCTCTCCCCAGTGAGGCATGGAGAC...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR CCA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACGACTGGAGAGGTGAGTaGGTGCATCTGTCCAACGGT +
Preference number: 2 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYDWRGE*VHLSNG
Trigger: ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTC...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR CCA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACGTCTCCATGCCTCACTaGGGAGAGGGAGGTGAGTTT +
Preference number: 2 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYVSMPH*GEGGEF
Trigger: AAACTCACCTCCCTCTCCCCAGTGAGGCATGGAGAC...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR CCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACATTAGCATGGAAGGGGTaGGGTCCCCAAGTTGGTCCC +
Preference number: 2 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTLAWKG*GPQVGP
Trigger: GGGACCAACTTGGGGACCCCACCCCTTCCATGCTAA...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR CCA 72 bp GCTCCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTaGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTC +
Preference number: 3 (lower is better)
Translates to: APVGRGADWRGE*VHLSNGPPGVV
Trigger: GACTACACCGGGTGGACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGGAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR TCA 72 bp AAGTGCTCCCGTGGGGCGGGGTGCGGACTGGAGAGGTaGGTGGGTGCATCTGTCCAACGGTCCACCCGGTGT +
Preference number: 3 (lower is better)
Translates to: KCSRGAGCGLER*VGASVQRSTRC
Trigger: ACACCGGGTGGACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGGAGCACTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR CCA 72 bp ATTTCCACTCCTCATGGTCCCTTTCACGGAAAGGGTTaGGGACCCCTCCACCTCCATGGGCAGCAGGGGTCC +
Preference number: 3 (lower is better)
Translates to: ISTPHGPFHGKG*GPLHLHGQQGS
Trigger: GGACCCCTGCTGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTGGAAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
3UTR-3UTR CAA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGCTTTCACGGAAAGGGTaGGGGACCCCTCCACCTCCA +
Preference number: 3 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQLSRKG*GTPPPP
Trigger: TGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAG...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCCCCAGCTCGGGCTGCTaGGTAGAGGGCGCCGGGAGG +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRPSSGC*VEGAGR
Trigger: CCTCCCGGCGCCCTCTACTCAGCAGCCCGAGCTGGG...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCGGCTGCCTGCGCCCTTaGCCCCGCCGGCTTTGGCTC +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRGCLRP*PRRLWL
Trigger: GAGCCAAAGCCGGCGGGGGCAAGGGCGCAGGCAGCC...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCGCCATGACAGGCGGCTaGCTGCGCCCTTGCCCCCGC +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRAMTGG*LRPCPR
Trigger: GCGGGGGCAAGGGCGCAGGCAGCCGCCTGTCATGGC...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR TCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCCCCCACCAGAGGTCGTaGCTGCAGCGCTCCCTCCCC +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRPHQRS*LQRSLP
Trigger: GGGGAGGGAGCGCTGCAGTCACGACCTCTGGTGGGG...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCGCGGGTCCTCCACGCTaGTGTCGAGCGGCCCATGTC +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRAGPPR*CRAAHV
Trigger: GACATGGGCCGCTCGACACCAGCGTGGAGGACCCGC...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCCCCGGCGGTGCTCTTTaGCCCCTTGACCCTGGGTTT +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRPGGAL*PLDPGF
Trigger: AAACCCAGGGTCAAGGGGTCAAAGAGCACCGCCGGG...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTGCTCGTGCCGCTTCTTaGCGGGTTCCTCCGAGCCTC +
Preference number: 4 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGARAAS*RVPPSL
Trigger: GAGGCTCGGAGGAACCCGGCAAGAAGCGGCACGAGC...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTCGCACCCCCGGTGCCTaGGCTGCTGGTACTGATCCA +
Preference number: 4 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGRTPGA*AAGTDP
Trigger: TGGATCAGTACCAGCAGCGCAGGCACCGGGGGTGCG...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCAGTGCCGTGCGGCCTTaGGCATCGCGGGCCGCCACG +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPSAVRP*ASRAAT
Trigger: CGTGGCGGCCCGCGATGCGCAAGGCCGCACGGCACT...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCCAGCCCTGGAGCTGGTaGCTCCAGAGTGATAGGGGG +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRQPWSW*LQSDRG
Trigger: CCCCCTATCACTCTGGAGCCACCAGCTCCAGGGCTG...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCCTGGAAGACAAGCCTTaGGGTCCGGGAAGGGGCCCT +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRLEDKP*GPGRGP
Trigger: AGGGCCCCTTCCCGGACCCCAAGGCTTGTCTTCCAG...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCAGCAGAGATAGCCCTTaGGGGCCGCTTGCCTGGGAC +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRSRDSP*GPLAWD
Trigger: GTCCCAGGCAAGCGGCCCCCAAGGGCTATCTCTGCT...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTCACCATGGGCGAAGGTaGGGGTTCCCGACTCAGGGG +
Preference number: 4 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGHHGRR*GFPTQG
Trigger: CCCCTGAGTCGGGAACCCCCACCTTCGCCCATGGTG...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTGGCCCATGTCGCGCGTaGGCCAGAAGCAGCAGAACG +
Preference number: 4 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGGPCRA*ARSSRT
Trigger: CGTTCTGCTGCTTCTGGCCCACGCGCGACATGGGCC...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTCCAGGGTCAGCGAGATaGGGTAGGTCGTTGTCCGGC +
Preference number: 4 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGPGSAR*GRSLSG
Trigger: GCCGGACAACGACCTACCTCATCTCGCTGACCCTGG...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR TCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCCTCGCTTTCGGGCCATaGCAGGCGGCTGCCTGCGCC +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPLAFGP*QAAACA
Trigger: GGCGCAGGCAGCCGCCTGTCATGGCCCGAAAGCGAG...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR TCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCAGCATCTGCCCAGCCTaGGAACTTGGCATCGGGTGC +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRSICPA*ELGIGC
Trigger: GCACCCGATGCCAAGTTCTCAGGCTGGGCAGATGCT...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCAGACCCGGTCCACATTaGGCCCATAGGTTGCGCAGG +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRRPGPH*AHRLRR
Trigger: CCTGCGCAACCTATGGGCTCAATGTGGACCGGGTCT...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGGGCGCCGGCTGCGGCTaGAGATGGAGAAGGCGGCGG +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRGAGCG*RWRRRR
Trigger: CCGCCGCCTTCTCCATCTGCAGCCGCAGCCGGCGCC...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCACCCGGGGGCGCCGGCTaGGGCTGCAGATGGAGAAGG +
Preference number: 4 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWAPGGAG*GCRWRR
Trigger: CCTTCTCCATCTGCAGCCGCAGCCGGCGCCCCCGGG...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCATCCACAGCGCATCCTaGCGGTGGAAGAGACGCTCG +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRIHSAS*RWKRRS
Trigger: CGAGCGTCTCTTCCACCGGCAGGATGCGCTGTGGAT...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGGCTGCCTGCGCCCTTaGCCCCGCCGGCTTTGGCTC +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWGCLRP*PRRLWL
Trigger: GAGCCAAAGCCGGCGGGGGCAAGGGCGCAGGCAGCC...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGGCCATGACAGGCGGCTaGCTGCGCCCTTGCCCCCGC +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRAMTGG*LRPCPR
Trigger: GCGGGGGCAAGGGCGCAGGCAGCCGCCTGTCATGGC...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCCCCAGCCACCGCAGCTaGCTCAGCTCGGAGCTCCCG +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPPSHRS*LSSELP
Trigger: CGGGAGCTCCGAGCTGAGGCAGCTGCGGTGGCTGGG...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
67% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCCCCAGCCACCGCAGCTaGCTCAGCTCGGAGCTCCCG +
Preference number: 4 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTPSHRS*LSSELP
Trigger: CGGGAGCTCCGAGCTGAGGCAGCTGCGGTGGCTGGG...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCAGCGGCGAGCGGAGCTaGGGGTCCTCCACGCTGGTG +
Preference number: 4 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTSGERS*GSSTLV
Trigger: CACCAGCGTGGAGGACCCGCAGCTCCGCTCGCCGCT...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTAGGCTTGGGAGCAGGTaGAGGAGGCGCCACCTTGAG +
Preference number: 4 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGRLGSR*RRRHLE
Trigger: CTCAAGGTGGCGCCTCCTCCACCTGCTCCCAAGCCT...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTTGGCCCACGTGGGGTTaGGAGCTCCACAGTCCACAC +
Preference number: 4 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGWPTWG*ELHSPH
Trigger: GTGTGGACTGTGGAGCTCCCAACCCCACGTGGGCCA...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCCGCCCAGATTCAAACTaGCCCACGTGGGGTTGGGAG +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRRPDSN*PTWGWE
Trigger: CTCCCAACCCCACGTGGGCCAGTTTGAATCTGGGCG...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTGCGTGGAGGTGGCAGTaGCAGAAGTGGCTGGAACTG +
Preference number: 4 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGAWRWQ*QKWLEL
Trigger: CAGTTCCAGCCACTTCTGTCACTGCCACCTCCACGC...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACCCCGGGGGCGCCGGCTaGGGCTGCAGATGGAGAAGG +
Preference number: 4 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYPGGAG*GCRWRR
Trigger: CCTTCTCCATCTGCAGCCGCAGCCGGCGCCCCCGGG...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTGAACTTGGCATCGGGTaGCCCTGCTTCCTCCCGGAT +
Preference number: 4 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGELGIG*PCFLPD
Trigger: ATCCGGGAGGAAGCAGGGGCACCCGATGCCAAGTTC...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGAGCGGCGAGCGGAGCTaGGGGTCCTCCACGCTGGTG +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRSGERS*GSSTLV
Trigger: CACCAGCGTGGAGGACCCGCAGCTCCGCTCGCCGCT...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCCTGGAGAAGGATGTCTaGACACAGCTGGCTGCCAGC +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRLEKDV*TQLAAS
Trigger: GCTGGCAGCCAGCTGTGTGCAGACATCCTTCTCCAG...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTCTTGCGGTCACGAGTaGACGCTCGGCCGCCCTCCC +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPSCGHE*TLGRPP
Trigger: GGGAGGGCGGCCGAGCGTCCACTCGTGACCGCAAGA...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCTTCTGGGCCACCTCCTaGAAGACCCGGTCCACATTG +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRFWATS*KTRSTL
Trigger: CAATGTGGACCGGGTCTTCCAGGAGGTGGCCCAGAA...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCGCGGGTCCTCCACGCTaGTGTCGAGCGGCCCATGTC +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPAGPPR*CRAAHV
Trigger: GACATGGGCCGCTCGACACCAGCGTGGAGGACCCGC...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGGAGGAGGCGCCACCTTaGGCCTTCGGCTACCGGTGC +
Preference number: 4 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGEEAPP*AFGYRC
Trigger: GCACCGGTAGCCGAAGGCTCAAGGTGGCGCCTCCTC...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR TCA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACCCCCACCAGAGGTCGTaGCTGCAGCGCTCCCTCCCC +
Preference number: 4 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYPHQRS*LQRSLP
Trigger: GGGGAGGGAGCGCTGCAGTCACGACCTCTGGTGGGG...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR TCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCCCACCTCATGTCGCCTaGCTTCTGCTCTTACTGTGG +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRPPHVA*LLLLLW
Trigger: CCACAGTAAGAGCAGAAGTCAGGCGACATGAGGTGG...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAGGCGCCGGCTGCGGCTaGAGATGGAGAAGGCGGCGG +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTGAGCG*RWRRRR
Trigger: CCGCCGCCTTCTCCATCTGCAGCCGCAGCCGGCGCC...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGACCAGAGGTCGTGACTaGAGCGCTCCCTCCCCCGCC +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRTRGRD*SAPSPA
Trigger: GGCGGGGGAGGGAGCGCTGCAGTCACGACCTCTGGT...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAGGCCCGAGGGGCTaGGTGGAGGTGGCAGTGACA +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWAGPRG*VEVAVT
Trigger: TGTCACTGCCACCTCCACGCAGCCCCTCGGGCCTGC...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTTGGTCTGTTGGAAGCTaGAGGGAACTGGGGCTAGGG +
Preference number: 4 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGWSVGS*RELGLG
Trigger: CCCTAGCCCCAGTTCCCTGCAGCTTCCAACAGACCA...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCCTCCTCAAAGCTGGCTaGCTCAAAGTGCCACGTCTG +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRLLKAG*LKVPRL
Trigger: CAGACGTGGCACTTTGAGGCAGCCAGCTTTGAGGAG...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCAGTTTCCCTTTGCGTTaGGGATCGCCTGGATGGCCA +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRSFPLR*GSPGWP
Trigger: TGGCCATCCAGGCGATCCGCAACGCAAAGGGAAACT...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCGCCAGGAACAGCAGCTaGTCATACTTGGCGCGAATC +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRARNSS*SYLARI
Trigger: GATTCGCGCCAAGTATGAGCAGCTGCTGTTCCTGGC...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCGGCTCCTCCGTGGTaGCCAGAGGCGCCAGGAACA +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWAAPPW*PEAPGT
Trigger: TGTTCCTGGCGCCTCTGGGCACCACGGAGGAGCCGC...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAAGTGCCGTGCGGCCTTaGGCATCGCGGGCCGCCACG +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTSAVRP*ASRAAT
Trigger: CGTGGCGGCCCGCGATGCGCAAGGCCGCACGGCACT...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCAGAAGTGGCTGGAACTaGGATTGCTGGCACGGTGAG +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRRSGWN*DCWHGE
Trigger: CTCACCGTGCCAGCAATCCCAGTTCCAGCCACTTCT...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCGCAGCTGCTCATACTTaGCGCGAATCCACGACTCAC +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRAAAHT*RESTTH
Trigger: GTGAGTCGTGGATTCGCGCCAAGTATGAGCAGCTGC...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCACAGCGGCCCACAGTTaGCGGCCCAGCGGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTTAAHS*RPSGSS
Trigger: GGAGGAGCCGCTGGGCCGCCAACTGTGGGCCGCTGT...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGGCGGGTCCTCCACGCTaGTGTCGAGCGGCCCATGTC +
Preference number: 4 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGAGPPR*CRAAHV
Trigger: GACATGGGCCGCTCGACACCAGCGTGGAGGACCCGC...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCCCCGGCGGTGCTCTTTaGCCCCTTGACCCTGGGTTT +
Preference number: 4 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTPGGAL*PLDPGF
Trigger: AAACCCAGGGTCAAGGGGTCAAAGAGCACCGCCGGG...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR TCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCGCGCAGTTCGGGAATTaGTCGGCTCAAAGTCCATTC +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRAQFGN*SAQSPF
Trigger: GAATGGACTTTGAGCCGATCAATTCCCGAACTGCGC...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCCTCCAGCACCTGGTATaGACCCGTGAGGAATCTATG +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRLQHLV*TREESM
Trigger: CATAGATTCCTCACGGGTTCATACCAGGTGCTGGAG...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCGCAGGCCCGAGGGGCTaGGTGGAGGTGGCAGTGACA +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTAGPRG*VEVAVT
Trigger: TGTCACTGCCACCTCCACGCAGCCCCTCGGGCCTGC...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTAGCACCAGATGGGTCTaGCCATCCACTAGCATCTCC +
Preference number: 4 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGSTRWV*PSTSIS
Trigger: GGAGATGCTAGTGGATGGGCAGACCCATCTGGTGCT...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGGGCATCGGGTGCCCCTaGTTCCTCCCGGATCAGCAC +
Preference number: 4 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGGIGCP*FLPDQH
Trigger: GTGCTGATCCGGGAGGAAGCAGGGGCACCCGATGCC...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAGGCATCGGGTGCCCCTaGTTCCTCCCGGATCAGCAC +
Preference number: 4 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWAGIGCP*FLPDQH
Trigger: GTGCTGATCCGGGAGGAAGCAGGGGCACCCGATGCC...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCCGGAGGGAGCTCAGCTaGCCATGGAGACGGCTCACA +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPRRELS*PWRRLT
Trigger: TGTGAGCCGTCTCCATGGGCAGCTGAGCTCCCTCCG...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACACCCAGCCACCGCAGCTaGCTCAGCTCGGAGCTCCCG +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTPSHRS*LSSELP
Trigger: CGGGAGCTCCGAGCTGAGGCAGCTGCGGTGGCTGGG...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTAGTTTCCCTTTGCGTTaGGGATCGCCTGGATGGCCA +
Preference number: 4 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGSFPLR*GSPGWP
Trigger: TGGCCATCCAGGCGATCCGCAACGCAAAGGGAAACT...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCGCGGCTCCTCCGTGGTaGCCAGAGGCGCCAGGAACA +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTAAPPW*PEAPGT
Trigger: TGTTCCTGGCGCCTCTGGGCACCACGGAGGAGCCGC...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGAGCGCATCCTGCCGGTaGAAGAGACGCTCGTGCCGC +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWSASCR*KRRSCR
Trigger: GCGGCACGAGCGTCTCTTCCACCGGCAGGATGCGCT...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAAGCGCATCCTGCCGGTaGAAGAGACGCTCGTGCCGC +
Preference number: 4 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWASASCR*KRRSCR
Trigger: GCGGCACGAGCGTCTCTTCCACCGGCAGGATGCGCT...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCAGGCTTGGGAGCAGGTaGAGGAGGCGCCACCTTGAG +
Preference number: 4 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTRLGSR*RRRHLE
Trigger: CTCAAGGTGGCGCCTCCTCCACCTGCTCCCAAGCCT...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCCCCTGGACCCGCTGCTaGAAGACAAGCCTTGGGGTC +
Preference number: 4 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTPWTRC*KTSLGV
Trigger: GACCCCAAGGCTTGTCTTCCAGCAGCGGGTCCAGGG...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCCCCTGGACCCGCTGCTaGAAGACAAGCCTTGGGGTC +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPPWTRC*KTSLGV
Trigger: GACCCCAAGGCTTGTCTTCCAGCAGCGGGTCCAGGG...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
63% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCCTCCCAGCAGCTCCCTaGACCCGCTGCTGGAAGACA +
Preference number: 4 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTLPAAP*TRCWKT
Trigger: TGTCTTCCAGCAGCGGGTCCAGGGAGCTGCTGGGAG...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTGTAGATGCAGCTGAATaGCTTGGCGAGCTAGGCAGG +
Preference number: 4 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGVDAAE*LGELGR
Trigger: CCTGCCTAGCTCGCCAAGCCATTCAGCTGCATCTAC...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTGGGCCTTCACCCATCTaGACGGTGCTCATATCCTTG +
Preference number: 4 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGGPSPI*TVLISL
Trigger: CAAGGATATGAGCACCGTCCAGATGGGTGAAGGCCC...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGCACCATGGGCGAAGGTaGGGGTTCCCGACTCAGGGG +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRHHGRR*GFPTQG
Trigger: CCCCTGAGTCGGGAACCCCCACCTTCGCCCATGGTG...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCTGGCCCACGTGGGGTTaGGAGCTCCACAGTCCACAC +
Preference number: 4 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTWPTWG*ELHSPH
Trigger: GTGTGGACTGTGGAGCTCCCAACCCCACGTGGGCCA...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTGGCCCACGTGGGGTTaGGAGCTCCACAGTCCACAC +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPWPTWG*ELHSPH
Trigger: GTGTGGACTGTGGAGCTCCCAACCCCACGTGGGCCA...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTGCAGCTGCTCATACTTaGCGCGAATCCACGACTCAC +
Preference number: 4 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGAAAHT*RESTTH
Trigger: GTGAGTCGTGGATTCGCGCCAAGTATGAGCAGCTGC...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAACAGCGGCCCACAGTTaGCGGCCCAGCGGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTTAAHS*RPSGSS
Trigger: GGAGGAGCCGCTGGGCCGCCAACTGTGGGCCGCTGT...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGCTGCGCTGCTGGTACTaGTCCACAGCGCATCCTGCC +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWLRCWY*STAHPA
Trigger: GGCAGGATGCGCTGTGGATCAGTACCAGCAGCGCAG...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR TCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGCTCGCTTTCGGGCCATaGCAGGCGGCTGCCTGCGCC +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQLAFGP*QAAACA
Trigger: GGCGCAGGCAGCCGCCTGTCATGGCCCGAAAGCGAG...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCATCCACAGCGCATCCTaGCGGTGGAAGAGACGCTCG +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPIHSAS*RWKRRS
Trigger: CGAGCGTCTCTTCCACCGGCAGGATGCGCTGTGGAT...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCGCACCCCCGGTGCCTaGGCTGCTGGTACTGATCCA +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTRTPGA*AAGTDP
Trigger: TGGATCAGTACCAGCAGCGCAGGCACCGGGGGTGCG...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAACCAGAGGTCGTGACTaGAGCGCTCCCTCCCCCGCC +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTTRGRD*SAPSPA
Trigger: GGCGGGGGAGGGAGCGCTGCAGTCACGACCTCTGGT...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACCAGAGTGATAGGGGGTaGAGGCCCGAGGGGCTGCGT +
Preference number: 4 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYQSDRG*RPEGLR
Trigger: ACGCAGCCCCTCGGGCCTGCACCCCCTATCACTCTG...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACGGCATCGGGTGCCCCTaGTTCCTCCCGGATCAGCAC +
Preference number: 4 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYGIGCP*FLPDQH
Trigger: GTGCTGATCCGGGAGGAAGCAGGGGCACCCGATGCC...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGCGGAGGGAGCTCAGCTaGCCATGGAGACGGCTCACA +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRRRELS*PWRRLT
Trigger: TGTGAGCCGTCTCCATGGGCAGCTGAGCTCCCTCCG...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGAGCGGCGAGCGGAGCTaGGGGTCCTCCACGCTGGTG +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQSGERS*GSSTLV
Trigger: CACCAGCGTGGAGGACCCGCAGCTCCGCTCGCCGCT...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCTGCACACAGCTGGCTaGCAGCCTGGCGGGCATAGA +
Preference number: 4 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGLHTAG*QPGGHR
Trigger: TCTATGCCCGCCAGGCTGGCAGCCAGCTGTGTGCAG...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGCTGCACACAGCTGGCTaGCAGCCTGGCGGGCATAGA +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWLHTAG*QPGGHR
Trigger: TCTATGCCCGCCAGGCTGGCAGCCAGCTGTGTGCAG...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTCTCCCGGGCAGCCGTaGTGGAGAAGGATGTCTGCA +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPSPGQP*WRRMSA
Trigger: TGCAGACATCCTTCTCCAGCACGGCTGCCCGGGAGA...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGCTCCCAGCAGCTCCCTaGACCCGCTGCTGGAAGACA +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWLPAAP*TRCWKT
Trigger: TGTCTTCCAGCAGCGGGTCCAGGGAGCTGCTGGGAG...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCCCCAGCCTGAGAACTTaGCATCGGGTGCCCCTGCTT +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPPSLRT*HRVPLL
Trigger: AAGCAGGGGCACCCGATGCCAAGTTCTCAGGCTGGG...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
62% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTGGGGGCCGCTTGCCTaGGACTTTGACCGTTGTTCG +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPWGPLA*DFDRCS
Trigger: CGAACAACGGTCAAAGTCCCAGGCAAGCGGCCCCCA...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGAGCAGAGATAGCCCTTaGGGGCCGCTTGCCTGGGAC +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWSRDSP*GPLAWD
Trigger: GTCCCAGGCAAGCGGCCCCCAAGGGCTATCTCTGCT...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCCCCGCTCCTCAAAGCTaGCTGCCTCAAAGTGCCACG +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPPAPQS*LPQSAT
Trigger: CGTGGCACTTTGAGGCAGCCAGCTTTGAGGAGCGGG...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
62% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCTGCGGATCGCCTGGATaGCCACAGCTTCGCTTTGGC +
Preference number: 4 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTCGSPG*PQLRFG
Trigger: GCCAAAGCGAAGCTGTGGCCATCCAGGCGATCCGCA...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGACAGCGGCCCACAGTTaGCGGCCCAGCGGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQTAAHS*RPSGSS
Trigger: GGAGGAGCCGCTGGGCCGCCAACTGTGGGCCGCTGT...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCGGCCCATGTCGCGCGTaGGCCAGAAGCAGCAGAACG +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTGPCRA*ARSSRT
Trigger: CGTTCTGCTGCTTCTGGCCCACGCGCGACATGGGCC...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCCAGGGTCAGCGAGATaGGGTAGGTCGTTGTCCGGC +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTPGSAR*GRSLSG
Trigger: GCCGGACAACGACCTACCTCATCTCGCTGACCCTGG...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR TCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGGAGGAGGCGCCACCTTaGGCCTTCGGCTACCGGTGC +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQEEAPP*AFGYRC
Trigger: GCACCGGTAGCCGAAGGCTCAAGGTGGCGCCTCCTC...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR TCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGTGCTCTTTGACCCCTTaGCCCTGGGTTTGCCCTCGC +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRCSLTP*PWVCPR
Trigger: GCGAGGGCAAACCCAGGGTCAAGGGGTCAAAGAGCA...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR TCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCGTGGAGGTGGCAGTaGCAGAAGTGGCTGGAACTG +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWAWRWQ*QKWLEL
Trigger: CAGTTCCAGCCACTTCTGTCACTGCCACCTCCACGC...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR TCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGAGCATCTGCCCAGCCTaGGAACTTGGCATCGGGTGC +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRSICPA*ELGIGC
Trigger: GCACCCGATGCCAAGTTCTCAGGCTGGGCAGATGCT...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAAGCATCTGCCCAGCCTaGGAACTTGGCATCGGGTGC +
Preference number: 4 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWASICPA*ELGIGC
Trigger: GCACCCGATGCCAAGTTCTCAGGCTGGGCAGATGCT...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGAGACCCGGTCCACATTaGGCCCATAGGTTGCGCAGG +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRRPGPH*AHRLRR
Trigger: CCTGCGCAACCTATGGGCTCAATGTGGACCGGGTCT...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGAGACCCGGTCCACATTaGGCCCATAGGTTGCGCAGG +
Preference number: 4 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGRPGPH*AHRLRR
Trigger: CCTGCGCAACCTATGGGCTCAATGTGGACCGGGTCT...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGGCAGGAAGCTCTGTTTaGTGGGGATGGCTCGCCCAC +
Preference number: 4 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGAGSSV*WGWLAH
Trigger: GTGGGCGAGCCATCCCCATCAAACAGAGCTTCCTGC...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAGGAAGCTCTGTTTaGTGGGGATGGCTCGCCCAC +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWAGSSV*WGWLAH
Trigger: GTGGGCGAGCCATCCCCATCAAACAGAGCTTCCTGC...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCATGGAAGAGACGCTCGTaGCGCTTCTTGCCGGGTTCC +
Preference number: 4 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWAWKRRS*RFLPGS
Trigger: GGAACCCGGCAAGAAGCGGCACGAGCGTCTCTTCCA...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGTGGAAGAGACGCTCGTaGCGCTTCTTGCCGGGTTCC +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWWKRRS*RFLPGS
Trigger: GGAACCCGGCAAGAAGCGGCACGAGCGTCTCTTCCA...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCGGAGTTGTTGTTGTTTaGGCAAGGTCACCACCTTCT +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRGVVVV*ARSPPS
Trigger: AGAAGGTGGTGACCTTGCGCAAACAACAACAACTCC...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCTCTGGCTTCAAGAGGTaGTTGGATGTCTGGTCTGTT +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRSGFKR*LDVWSV
Trigger: AACAGACCAGACATCCAAGCACCTCTTGAAGCCAGA...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCAGTTTCTTCCTCCTCTaGTTCTTCACCATGGGCGAA +
Preference number: 4 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRSFFLL*FFTMGE
Trigger: TTCGCCCATGGTGAAGAAGCAGAGGAGGAAGAAACT...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCTGCACACAGCTGGCTaGCAGCCTGGCGGGCATAGA +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTLHTAG*QPGGHR
Trigger: TCTATGCCCGCCAGGCTGGCAGCCAGCTGTGTGCAG...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGTCTCCCGGGCAGCCGTaGTGGAGAAGGATGTCTGCA +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWSPGQP*WRRMSA
Trigger: TGCAGACATCCTTCTCCAGCACGGCTGCCCGGGAGA...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCAGTCGGCTCAGAGCTTaGTTGGCCACCTCATGTCGC +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPSRLRA*LATSCR
Trigger: GCGACATGAGGTGGCCAAGCAAGCTCTGAGCCGACT...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCCCTGGAGCTGGTaGCTCCAGAGTGATAGGGGG +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTQPWSW*LQSDRG
Trigger: CCCCCTATCACTCTGGAGCCACCAGCTCCAGGGCTG...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCACCCAGCCTGAGAACTTaGCATCGGGTGCCCCTGCTT +
Preference number: 4 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWAPSLRT*HRVPLL
Trigger: AAGCAGGGGCACCCGATGCCAAGTTCTCAGGCTGGG...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGCCCAGCCTGAGAACTTaGCATCGGGTGCCCCTGCTT +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRPSLRT*HRVPLL
Trigger: AAGCAGGGGCACCCGATGCCAAGTTCTCAGGCTGGG...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGTGGGGGCCGCTTGCCTaGGACTTTGACCGTTGTTCG +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRWGPLA*DFDRCS
Trigger: CGAACAACGGTCAAAGTCCCAGGCAAGCGGCCCCCA...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCATGGGGGCCGCTTGCCTaGGACTTTGACCGTTGTTCG +
Preference number: 4 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWAWGPLA*DFDRCS
Trigger: CGAACAACGGTCAAAGTCCCAGGCAAGCGGCCCCCA...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACACACCATGGGCGAAGGTaGGGGTTCCCGACTCAGGGG +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTHHGRR*GFPTQG
Trigger: CCCCTGAGTCGGGAACCCCCACCTTCGCCCATGGTG...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTCTGCTTCTTCACCATaGGCGAAGGTGGGGGTTCCC +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPSASSP*AKVGVP
Trigger: GGGAACCCCCACCTTCGCCCATGGTGAAGAAGCAGA...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCTCTGCTTCTTCACCATaGGCGAAGGTGGGGGTTCCC +
Preference number: 4 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTSASSP*AKVGVP
Trigger: GGGAACCCCCACCTTCGCCCATGGTGAAGAAGCAGA...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCACCCGCTCCTCAAAGCTaGCTGCCTCAAAGTGCCACG +
Preference number: 4 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWAPAPQS*LPQSAT
Trigger: CGTGGCACTTTGAGGCAGCCAGCTTTGAGGAGCGGG...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGTGCGGATCGCCTGGATaGCCACAGCTTCGCTTTGGC +
Preference number: 4 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGCGSPG*PQLRFG
Trigger: GCCAAAGCGAAGCTGTGGCCATCCAGGCGATCCGCA...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCGCCCAGATTCAAACTaGCCCACGTGGGGTTGGGAG +
Preference number: 4 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGRPDSN*PTWGWE
Trigger: CTCCCAACCCCACGTGGGCCAGTTTGAATCTGGGCG...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCGTGCCCAGGTTCCGGTaGATGCCAGAACACTCGATG +
Preference number: 4 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTVPRFR*MPEHSM
Trigger: CATCGAGTGTTCTGGCATCCACCGGAACCTGGGCAC...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCCTGTCCAGTGAGGCCTaGATGCCAGCTTGGAGTTCG +
Preference number: 4 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTLSSEA*MPAWSS
Trigger: CGAACTCCAAGCTGGCATCCAGGCCTCACTGGACAG...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCTGCTCTTTGACCCCTTaGCCCTGGGTTTGCCCTCGC +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTCSLTP*PWVCPR
Trigger: GCGAGGGCAAACCCAGGGTCAAGGGGTCAAAGAGCA...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR TCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGACGACTTCCCACTCCTaGCATCACCCAGCACACCCA +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRTTSHS*HHPAHP
Trigger: TGGGTGTGCTGGGTGATGTCAGGAGTGGGAAGTCGT...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCGCAGGAAGCTCTGTTTaGTGGGGATGGCTCGCCCAC +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTAGSSV*WGWLAH
Trigger: GTGGGCGAGCCATCCCCATCAAACAGAGCTTCCTGC...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGCAGAGTGATAGGGGGTaGAGGCCCGAGGGGCTGCGT +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQQSDRG*RPEGLR
Trigger: ACGCAGCCCCTCGGGCCTGCACCCCCTATCACTCTG...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACGAACTTGGCATCGGGTaGCCCTGCTTCCTCCCGGAT +
Preference number: 4 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYELGIG*PCFLPD
Trigger: ATCCGGGAGGAAGCAGGGGCACCCGATGCCAAGTTC...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCGAACTTGGCATCGGGTaGCCCTGCTTCCTCCCGGAT +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTELGIG*PCFLPD
Trigger: ATCCGGGAGGAAGCAGGGGCACCCGATGCCAAGTTC...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTGGAGTTGTTGTTGTTTaGGCAAGGTCACCACCTTCT +
Preference number: 4 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGGVVVV*ARSPPS
Trigger: AGAAGGTGGTGACCTTGCGCAAACAACAACAACTCC...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGTGGTCTGTTGGAAGCTaGAGGGAACTGGGGCTAGGG +
Preference number: 4 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGWSVGS*RELGLG
Trigger: CCCTAGCCCCAGTTCCCTGCAGCTTCCAACAGACCA...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCACGCTTGGCTTCAGCTTaGACAGCCGAGCCTTCAGTC +
Preference number: 4 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWARLASA*TAEPSV
Trigger: GACTGAAGGCTCGGCTGTGCAAGCTGAAGCCAAGCG...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCGCCACGTCTGACCAGTaGTGGACACGATCAGGAACT +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPATSDQ*WTRSGT
Trigger: AGTTCCTGATCGTGTCCAGCACTGGTCAGACGTGGC...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCGCCACGTCTGACCAGTaGTGGACACGATCAGGAACT +
Preference number: 4 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTATSDQ*WTRSGT
Trigger: AGTTCCTGATCGTGTCCAGCACTGGTCAGACGTGGC...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCCTCCTCAAAGCTGGCTaGCTCAAAGTGCCACGTCTG +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPLLKAG*LKVPRL
Trigger: CAGACGTGGCACTTTGAGGCAGCCAGCTTTGAGGAG...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCCTCCTCAAAGCTGGCTaGCTCAAAGTGCCACGTCTG +
Preference number: 4 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTLLKAG*LKVPRL
Trigger: CAGACGTGGCACTTTGAGGCAGCCAGCTTTGAGGAG...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTATCTTCTCCAGCACCTaGTATGAACCCGTGAGGAAT +
Preference number: 4 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGIFSST*YEPVRN
Trigger: ATTCCTCACGGGTTCATACCAGGTGCTGGAGAAGAT...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGCGGATCAGCACCAGATaGGTCTGCCCATCCACTAGC +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWRISTR*VCPSTS
Trigger: GCTAGTGGATGGGCAGACCCATCTGGTGCTGATCCG...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGTTCTGGGCCACCTCCTaGAAGACCCGGTCCACATTG +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRFWATS*KTRSTL
Trigger: CAATGTGGACCGGGTCTTCCAGGAGGTGGCCCAGAA...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGAAGGTCACCACCTTCTaGGCCACCTCCTGGAAGACC +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWKVTTF*ATSWKT
Trigger: GGTCTTCCAGGAGGTGGCCCAGAAGGTGGTGACCTT...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAAAGGTCACCACCTTCTaGGCCACCTCCTGGAAGACC +
Preference number: 4 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWAKVTTF*ATSWKT
Trigger: GGTCTTCCAGGAGGTGGCCCAGAAGGTGGTGACCTT...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGAAGGTCACCACCTTCTaGGCCACCTCCTGGAAGACC +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRKVTTF*ATSWKT
Trigger: GGTCTTCCAGGAGGTGGCCCAGAAGGTGGTGACCTT...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACGGTTCGCAAAAAGGCTaGTCCGCCGCTTGGCTGCTC +
Preference number: 4 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYGSQKG*SAAWLL
Trigger: GAGCAGCCAAGCGGCGGACCAGCCTTTTTGCGAACC...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGTGCCCAGGTTCCGGTaGATGCCAGAACACTCGATG +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWVPRFR*MPEHSM
Trigger: CATCGAGTGTTCTGGCATCCACCGGAACCTGGGCAC...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGTCTCCCACACGCGGTTaGCTGTGTCGTTGCCAATGG +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRSPTRG*LCRCQW
Trigger: CCATTGGCAACGACACAGCCAACCGCGTGTGGGAGA...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGTGTGTAATGACAACGTaGGCGAGCTCGGCCGCCAAG +
Preference number: 4 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGCVMTT*ASSAAK
Trigger: CTTGGCGGCCGAGCTCGCCCACGTTGTCATTACACA...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGTGTGTAATGACAACGTaGGCGAGCTCGGCCGCCAAG +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWCVMTT*ASSAAK
Trigger: CTTGGCGGCCGAGCTCGCCCACGTTGTCATTACACA...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGCTGCGCTGCTGGTACTaGTCCACAGCGCATCCTGCC +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQLRCWY*STAHPA
Trigger: GGCAGGATGCGCTGTGGATCAGTACCAGCAGCGCAG...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR TCA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACACGACTTCCCACTCCTaGCATCACCCAGCACACCCA +
Preference number: 4 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYTTSHS*HHPAHP
Trigger: TGGGTGTGCTGGGTGATGTCAGGAGTGGGAAGTCGT...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGAGCACCAGATGGGTCTaGCCATCCACTAGCATCTCC +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRSTRWV*PSTSIS
Trigger: GGAGATGCTAGTGGATGGGCAGACCCATCTGGTGCT...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGCGGAGGGAGCTCAGCTaGCCATGGAGACGGCTCACA +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQRRELS*PWRRLT
Trigger: TGTGAGCCGTCTCCATGGGCAGCTGAGCTCCCTCCG...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGAGTTTCCCTTTGCGTTaGGGATCGCCTGGATGGCCA +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRSFPLR*GSPGWP
Trigger: TGGCCATCCAGGCGATCCGCAACGCAAAGGGAAACT...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCCTCGATGCAGATGAGTaGGCCCAGATTCAAACTGGC +
Preference number: 4 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTLDADE*AQIQTG
Trigger: GCCAGTTTGAATCTGGGCGCACTCATCTGCATCGAG...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAGCCAGGAACAGCAGCTaGTCATACTTGGCGCGAATC +
Preference number: 4 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWAARNSS*SYLARI
Trigger: GATTCGCGCCAAGTATGAGCAGCTGCTGTTCCTGGC...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCTGGAGAAGGATGTCTaGACACAGCTGGCTGCCAGC +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTLEKDV*TQLAAS
Trigger: GCTGGCAGCCAGCTGTGTGCAGACATCCTTCTCCAG...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACATCTCCCGGGCAGCCGTaGTGGAGAAGGATGTCTGCA +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTSPGQP*WRRMSA
Trigger: TGCAGACATCCTTCTCCAGCACGGCTGCCCGGGAGA...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAGTCACTCACTCTCTCTaGCAGCTTCCTGAGTCGGCT +
Preference number: 4 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWAVTHSL*QLPESA
Trigger: AGCCGACTCAGGAAGCTGGCAGAGAGAGTGAGTGAC...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCAGTGACAGAAGTGGCTaGAACTGGGATTGCTGGCAC +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPSDRSG*NWDCWH
Trigger: GTGCCAGCAATCCCAGTTCCAGCCACTTCTGTCACT...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGTTTCAGCCCTGGAGCTaGTGGCTCCAGAGTGATAGG +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRFQPWS*WLQSDR
Trigger: CCTATCACTCTGGAGCCACCAGCTCCAGGGCTGAAA...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACTTCTGGGCCACCTCCTaGAAGACCCGGTCCACATTG +
Preference number: 4 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYFWATS*KTRSTL
Trigger: CAATGTGGACCGGGTCTTCCAGGAGGTGGCCCAGAA...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGGTAGATGCAGCTGAATaGCTTGGCGAGCTAGGCAGG +
Preference number: 4 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGVDAAE*LGELGR
Trigger: CCTGCCTAGCTCGCCAAGCCATTCAGCTGCATCTAC...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGGGATGTCTGGTCTGTTaGAAGCTGCAGGGAACTGGG +
Preference number: 4 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGGCLVC*KLQGTG
Trigger: CCCAGTTCCCTGCAGCTTCCAACAGACCAGACATCC...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGGGATGTCTGGTCTGTTaGAAGCTGCAGGGAACTGGG +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRGCLVC*KLQGTG
Trigger: CCCAGTTCCCTGCAGCTTCCAACAGACCAGACATCC...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACATGCGGATCGCCTGGATaGCCACAGCTTCGCTTTGGC +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTCGSPG*PQLRFG
Trigger: GCCAAAGCGAAGCTGTGGCCATCCAGGCGATCCGCA...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCGTGCCCAGGTTCCGGTaGATGCCAGAACACTCGATG +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTVPRFR*MPEHSM
Trigger: CATCGAGTGTTCTGGCATCCACCGGAACCTGGGCAC...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACTCTCCCACACGCGGTTaGCTGTGTCGTTGCCAATGG +
Preference number: 4 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYSPTRG*LCRCQW
Trigger: CCATTGGCAACGACACAGCCAACCGCGTGTGGGAGA...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAGCTGCTCATACTTaGCGCGAATCCACGACTCAC +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWAAAHT*RESTTH
Trigger: GTGAGTCGTGGATTCGCGCCAAGTATGAGCAGCTGC...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACTGTGTAATGACAACGTaGGCGAGCTCGGCCGCCAAG +
Preference number: 4 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYCVMTT*ASSAAK
Trigger: CTTGGCGGCCGAGCTCGCCCACGTTGTCATTACACA...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCTCCAGCACCTGGTATaGACCCGTGAGGAATCTATG +
Preference number: 4 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGLQHLV*TREESM
Trigger: CATAGATTCCTCACGGGTTCATACCAGGTGCTGGAG...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTCTCATCCTCCAGGCTaGAGACGAAGATCACAGCAT +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPSHPPG*RRRSQH
Trigger: ATGCTGTGATCTTCGTCTTCAGCCTGGAGGATGAGA...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCACACCACTCGAGGAGATaGTGCACTGATCCTGTCTTG +
Preference number: 4 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWAHHSRR*CTDPVL
Trigger: CAAGACAGGATCAGTGCATCATCTCCTCGAGTGGTG...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGCACCACTCGAGGAGATaGTGCACTGATCCTGTCTTG +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRHHSRR*CTDPVL
Trigger: CAAGACAGGATCAGTGCATCATCTCCTCGAGTGGTG...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCCCAAGGTCTTACTCTTaGCTTTCCGAGGGGACAACT +
Preference number: 4 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTPRSYS*LSEGTT
Trigger: AGTTGTCCCCTCGGAAAGGCAAGAGTAAGACCTTGG...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCATTGAGCCCATAGGTTaGGCAGGTCTCGTAGTAGCT +
Preference number: 4 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTIEPIG*AGLVVA
Trigger: AGCTACTACGAGACCTGCGCAACCTATGGGCTCAAT...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCTCGATGCAGATGAGTaGGCCCAGATTCAAACTGGC +
Preference number: 4 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGLDADE*AQIQTG
Trigger: GCCAGTTTGAATCTGGGCGCACTCATCTGCATCGAG...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCGCCAGGAACAGCAGCTaGTCATACTTGGCGCGAATC +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTARNSS*SYLARI
Trigger: GATTCGCGCCAAGTATGAGCAGCTGCTGTTCCTGGC...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGGAGGAGAGCCGGCACTaGGTCCTGGGTGTAAGTCAC +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQEESRH*VLGVSH
Trigger: GTGACTTACACCCAGGACCCAGTGCCGGCTCTCCTC...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGAGTGACAGAAGTGGCTaGAACTGGGATTGCTGGCAC +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWSDRSG*NWDCWH
Trigger: GTGCCAGCAATCCCAGTTCCAGCCACTTCTGTCACT...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTCTCAAAGTCCATTCCTaGCTATTAACCACAGCCTTA +
Preference number: 4 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGLKVHS*LLTTAL
Trigger: TAAGGCTGTGGTTAATAGCCAGGAATGGACTTTGAG...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACACGGATCAGCACCAGATaGGTCTGCCCATCCACTAGC +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTRISTR*VCPSTS
Trigger: GCTAGTGGATGGGCAGACCCATCTGGTGCTGATCCG...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCGTAGATGCAGCTGAATaGCTTGGCGAGCTAGGCAGG +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTVDAAE*LGELGR
Trigger: CCTGCCTAGCTCGCCAAGCCATTCAGCTGCATCTAC...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGGGTTCGCAAAAAGGCTaGTCCGCCGCTTGGCTGCTC +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQGSQKG*SAAWLL
Trigger: GAGCAGCCAAGCGGCGGACCAGCCTTTTTGCGAACC...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCGGATGTCTGGTCTGTTaGAAGCTGCAGGGAACTGGG +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTGCLVC*KLQGTG
Trigger: CCCAGTTCCCTGCAGCTTCCAACAGACCAGACATCC...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGAGGTGCTTGGATGTCTaGTCTGTTGGAAGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRRCLDV*SVGSCR
Trigger: CCTGCAGCTTCCAACAGACCAGACATCCAAGCACCT...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGGCCAAATTCCGGTCTaGCTTCAAGAGGTGCTTGGA +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWGQIPV*LQEVLG
Trigger: TCCAAGCACCTCTTGAAGCCAGACCGGAATTTGGCC...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACATCTGCTTCTTCACCATaGGCGAAGGTGGGGGTTCCC +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTSASSP*AKVGVP
Trigger: GGGAACCCCCACCTTCGCCCATGGTGAAGAAGCAGA...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGGATCTGACTCTCAATaGCCTGAACCCAAGCATCCC +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWGSDSQ*PEPKHP
Trigger: GGGATGCTTGGGTTCAGGCCATTGAGAGTCAGATCC...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGGGATCTGACTCTCAATaGCCTGAACCCAAGCATCCC +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRGSDSQ*PEPKHP
Trigger: GGGATGCTTGGGTTCAGGCCATTGAGAGTCAGATCC...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAGGATCTGACTCTCAATaGCCTGAACCCAAGCATCCC +
Preference number: 4 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWAGSDSQ*PEPKHP
Trigger: GGGATGCTTGGGTTCAGGCCATTGAGAGTCAGATCC...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACATCTCCCACACGCGGTTaGCTGTGTCGTTGCCAATGG +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTSPTRG*LCRCQW
Trigger: CCATTGGCAACGACACAGCCAACCGCGTGTGGGAGA...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGACGACTTCCCACTCCTaGCATCACCCAGCACACCCA +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQTTSHS*HHPAHP
Trigger: TGGGTGTGCTGGGTGATGTCAGGAGTGGGAAGTCGT...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACCTCCAGCACCTGGTATaGACCCGTGAGGAATCTATG +
Preference number: 4 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYLQHLV*TREESM
Trigger: CATAGATTCCTCACGGGTTCATACCAGGTGCTGGAG...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGTCTCATCCTCCAGGCTaGAGACGAAGATCACAGCAT +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWSHPPG*RRRSQH
Trigger: ATGCTGTGATCTTCGTCTTCAGCCTGGAGGATGAGA...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCACCACTCGAGGAGATaGTGCACTGATCCTGTCTTG +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTHHSRR*CTDPVL
Trigger: CAAGACAGGATCAGTGCATCATCTCCTCGAGTGGTG...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGAACACTCGATGCAGATaGGTGCGCCCAGATTCAAAC +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWNTRCR*VRPDSN
Trigger: GTTTGAATCTGGGCGCACTCATCTGCATCGAGTGTT...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCACCAAGGTCTTACTCTTaGCTTTCCGAGGGGACAACT +
Preference number: 4 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWAPRSYS*LSEGTT
Trigger: AGTTGTCCCCTCGGAAAGGCAAGAGTAAGACCTTGG...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAAGCACCAGATGGGTCTaGCCATCCACTAGCATCTCC +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTSTRWV*PSTSIS
Trigger: GGAGATGCTAGTGGATGGGCAGACCCATCTGGTGCT...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAATTGAGCCCATAGGTTaGGCAGGTCTCGTAGTAGCT +
Preference number: 4 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWAIEPIG*AGLVVA
Trigger: AGCTACTACGAGACCTGCGCAACCTATGGGCTCAAT...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTCTTTGTTCAAGGAATTaGCACTTCGTTTTAGCAGGA +
Preference number: 4 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGLCSRN*HFVLAG
Trigger: TCCTGCTAAAACGAAGTGGCAATTCCTTGAACAAAG...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGTGGTCTGTTGGAAGCTaGAGGGAACTGGGGCTAGGG +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQWSVGS*RELGLG
Trigger: CCCTAGCCCCAGTTCCCTGCAGCTTCCAACAGACCA...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGCGCTTGGCTTCAGCTTaGACAGCCGAGCCTTCAGTC +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQRLASA*TAEPSV
Trigger: GACTGAAGGCTCGGCTGTGCAAGCTGAAGCCAAGCG...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAGCCACGTCTGACCAGTaGTGGACACGATCAGGAACT +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTATSDQ*WTRSGT
Trigger: AGTTCCTGATCGTGTCCAGCACTGGTCAGACGTGGC...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGCTGGAGAAGGATGTCTaGACACAGCTGGCTGCCAGC +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQLEKDV*TQLAAS
Trigger: GCTGGCAGCCAGCTGTGTGCAGACATCCTTCTCCAG...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAAGAAGTGGCTGGAACTaGGATTGCTGGCACGGTGAG +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTRSGWN*DCWHGE
Trigger: CTCACCGTGCCAGCAATCCCAGTTCCAGCCACTTCT...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACATTTCAGCCCTGGAGCTaGTGGCTCCAGAGTGATAGG +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTFQPWS*WLQSDR
Trigger: CCTATCACTCTGGAGCCACCAGCTCCAGGGCTGAAA...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCATCTTCTCCAGCACCTaGTATGAACCCGTGAGGAAT +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPIFSST*YEPVRN
Trigger: ATTCCTCACGGGTTCATACCAGGTGCTGGAGAAGAT...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGCGGATCAGCACCAGATaGGTCTGCCCATCCACTAGC +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQRISTR*VCPSTS
Trigger: GCTAGTGGATGGGCAGACCCATCTGGTGCTGATCCG...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAGGGCCTTCACCCATCTaGACGGTGCTCATATCCTTG +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTGPSPI*TVLISL
Trigger: CAAGGATATGAGCACCGTCCAGATGGGTGAAGGCCC...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCAGGTGCTTGGATGTCTaGTCTGTTGGAAGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTRCLDV*SVGSCR
Trigger: CCTGCAGCTTCCAACAGACCAGACATCCAAGCACCT...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACTCCACATTTTGCGCTTaGCTTCAGCTTGCACAGCCG +
Preference number: 4 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYSTFCA*LQLAQP
Trigger: CGGCTGTGCAAGCTGAAGCCAAGCGCAAAATGTGGA...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGACGTCTGACCAGTGCTaGACACGATCAGGAACTCAA +
Preference number: 4 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRTSDQC*TRSGTQ
Trigger: TTGAGTTCCTGATCGTGTCCAGCACTGGTCAGACGT...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGACGTCTGACCAGTGCTaGACACGATCAGGAACTCAA +
Preference number: 4 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGTSDQC*TRSGTQ
Trigger: TTGAGTTCCTGATCGTGTCCAGCACTGGTCAGACGT...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAGCGCAGTTCGGGAATTaGTCGGCTCAAAGTCCATTC +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTAQFGN*SAQSPF
Trigger: GAATGGACTTTGAGCCGATCAATTCCCGAACTGCGC...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCAACACTCGATGCAGATaGGTGCGCCCAGATTCAAAC +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTNTRCR*VRPDSN
Trigger: GTTTGAATCTGGGCGCACTCATCTGCATCGAGTGTT...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACATTGAGCCCATAGGTTaGGCAGGTCTCGTAGTAGCT +
Preference number: 4 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYIEPIG*AGLVVA
Trigger: AGCTACTACGAGACCTGCGCAACCTATGGGCTCAAT...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAGGAGTTGTTGTTGTTTaGGCAAGGTCACCACCTTCT +
Preference number: 4 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWAGVVVV*ARSPPS
Trigger: AGAAGGTGGTGACCTTGCGCAAACAACAACAACTCC...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCATCTGGCTTCAAGAGGTaGTTGGATGTCTGGTCTGTT +
Preference number: 4 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWASGFKR*LDVWSV
Trigger: AACAGACCAGACATCCAAGCACCTCTTGAAGCCAGA...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGTCTGGCTTCAAGAGGTaGTTGGATGTCTGGTCTGTT +
Preference number: 4 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGSGFKR*LDVWSV
Trigger: AACAGACCAGACATCCAAGCACCTCTTGAAGCCAGA...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGAGTTTCTTCCTCCTCTaGTTCTTCACCATGGGCGAA +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWSFFLL*FFTMGE
Trigger: TTCGCCCATGGTGAAGAAGCAGAGGAGGAAGAAACT...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGATCTTCTCCAGCACCTaGTATGAACCCGTGAGGAAT +
Preference number: 4 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGIFSST*YEPVRN
Trigger: ATTCCTCACGGGTTCATACCAGGTGCTGGAGAAGAT...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAGGCCAAATTCCGGTCTaGCTTCAAGAGGTGCTTGGA +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTGQIPV*LQEVLG
Trigger: TCCAAGCACCTCTTGAAGCCAGACCGGAATTTGGCC...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCACGTCTGACCAGTGCTaGACACGATCAGGAACTCAA +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTTSDQC*TRSGTQ
Trigger: TTGAGTTCCTGATCGTGTCCAGCACTGGTCAGACGT...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGGCGCAGTTCGGGAATTaGTCGGCTCAAAGTCCATTC +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQAQFGN*SAQSPF
Trigger: GAATGGACTTTGAGCCGATCAATTCCCGAACTGCGC...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAAACACTCGATGCAGATaGGTGCGCCCAGATTCAAAC +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTNTRCR*VRPDSN
Trigger: GTTTGAATCTGGGCGCACTCATCTGCATCGAGTGTT...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCATCTCCTTCTTGTACTaGTCACTCTCAATCTTCTCC +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPISFLY*SLSIFS
Trigger: GGAGAAGATTGAGAGTGAGCAGTACAAGAAGGAGAT...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCAGTTTCTTCCTCCTCTaGTTCTTCACCATGGGCGAA +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTSFFLL*FFTMGE
Trigger: TTCGCCCATGGTGAAGAAGCAGAGGAGGAAGAAACT...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGAGGTGCTTGGATGTCTaGTCTGTTGGAAGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQRCLDV*SVGSCR
Trigger: CCTGCAGCTTCCAACAGACCAGACATCCAAGCACCT...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGTCCACATTTTGCGCTTaGCTTCAGCTTGCACAGCCG +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQSTFCA*LQLAQP
Trigger: CGGCTGTGCAAGCTGAAGCCAAGCGCAAAATGTGGA...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000239120.2
CDS-3UTR TCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGTCTCATCCTCCAGGCTaGAGACGAAGATCACAGCAT +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQSHPPG*RRRSQH
Trigger: ATGCTGTGATCTTCGTCTTCAGCCTGGAGGATGAGA...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCCTTTGTTCAAGGAATTaGCACTTCGTTTTAGCAGGA +
Preference number: 4 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTLCSRN*HFVLAG
Trigger: TCCTGCTAAAACGAAGTGGCAATTCCTTGAACAAAG...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCAGAGTAGAAAGCCATTaGTGGACAAGGTCACATATT +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPRVESH*WTRSHI
Trigger: AATATGTGACCTTGTCCAGCAATGGCTTTCTACTCT...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGTTAGTTTCCACATTTTaGGCTTGGCTTCAGCTTGCA +
Preference number: 4 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGLVSTF*AWLQLA
Trigger: TGCAAGCTGAAGCCAAGCGCAAAATGTGGAAACTAA...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGTTTTCCTCTTCAGCTTaGACAGCCGAGCCTTCAGTC +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQFSSSA*TAEPSV
Trigger: GACTGAAGGCTCGGCTGTGCAAGCTGAAGAGGAAAA...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000217941.2
CDS-3UTR CCA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCGTAGAAAGCCATTGCTaGACAAGGTCACATATTTCT +
Preference number: 4 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPVESHC*TRSHIS
Trigger: AGAAATATGTGACCTTGTCCAGCAATGGCTTTCTAC...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCATCTCCTTCTTGTACTaGTCACTCTCAATCTTCTCC +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTISFLY*SLSIFS
Trigger: GGAGAAGATTGAGAGTGAGCAGTACAAGAAGGAGAT...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAGTAGAAAGCCATTGCTaGACAAGGTCACATATTTCT +
Preference number: 4 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWAVESHC*TRSHIS
Trigger: AGAAATATGTGACCTTGTCCAGCAATGGCTTTCTAC...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGTAGAAAGCCATTGCTaGACAAGGTCACATATTTCT +
Preference number: 4 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWVESHC*TRSHIS
Trigger: AGAAATATGTGACCTTGTCCAGCAATGGCTTTCTAC...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACACTCAAAGTCCATTCCTaGCTATTAACCACAGCCTCT +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTLKVHS*LLTTAS
Trigger: AGAGGCTGTGGTTAATAGCCAGGAATGGACTTTGAG...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAATCTCCTTCTTGTACTaGTCACTCTCAATCTTCTCC +
Preference number: 4 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTISFLY*SLSIFS
Trigger: GGAGAAGATTGAGAGTGAGCAGTACAAGAAGGAGAT...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCTTTGTTCAAGGAATTaGCACTTCGTTTTAGCAGGA +
Preference number: 4 (lower is better)
Translates to: PNTLEPGTAARECPPTNTLCSRN*HFVLAG
Trigger: TCCTGCTAAAACGAAGTGGCAATTCCTTGAACAAAG...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR GCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGTTAGTTTCCACATTTTaGGCTTGGCTTCAGCTTGCA +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQLVSTF*AWLQLA
Trigger: TGCAAGCTGAAGCCAAGCGCAAAATGTGGAAACTAA...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000239120.2
CDS-3UTR CCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGCTCAAAGTCCATTCCTaGCTATTAACCACAGCCTTA +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQLKVHS*LLTTAL
Trigger: TAAGGCTGTGGTTAATAGCCAGGAATGGACTTTGAG...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR GCA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGAGAGTAGAAAGCCATTaGTGGACAAGGTCACATATT +
Preference number: 4 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQRVESH*WTRSHI
Trigger: AATATGTGACCTTGTCCAGCAATGGCTTTCTACTCT...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 90 bp CCATGTCGCGCGTGGGCCAGAAGCAGCAGAACGGCGGCCACGTCCTaGGCCTCCACAGCGGCCCACAGTTGGCGGCCCAGCGGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: PCRAWARSSRTAATS*ASTAAHSWRPSGSS
Trigger: GGAGGAGCCGCTGGGCCGCCAACTGTGGGCCGCTGTGGAGGCCCAGGACGTGGCCGCCGTTCTGCTGCTTCTGGCCCACGCGCGACATGG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 90 bp CGGCCGCCAAGTGCAGCGGCGAGCGGAGCTGCGGGTCCTCCACGCTaGTGTCGAGCGGCCCATGTCGCGCGTGGGCCAGAAGCAGCAGAA +
Preference number: 5 (lower is better)
Translates to: RPPSAAASGAAGPPR*CRAAHVARGPEAAE
Trigger: TTCTGCTGCTTCTGGCCCACGCGCGACATGGGCCGCTCGACACCAGCGTGGAGGACCCGCAGCTCCGCTCGCCGCTGCACTTGGCGGCCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTCACAGCGGCCCACAGTaGGCGGCCCAGCGGCTCCTC +
Preference number: 5 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGHSGPQ*AAQRLL
Trigger: GAGGAGCCGCTGGGCCGCCAACTGTGGGCCGCTGTG...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS GCA 90 bp TCCACAGCGCATCCTGCCGGTGGAAGAGACGCTCGTGCCGCTTCTTaGCGGGTTCCTCCGAGCCTCGGGGGCTGCCAGGATCTCGGGGCT +
Preference number: 5 (lower is better)
Translates to: STAHPAGGRDARAAS*RVPPSLGGCQDLGA
Trigger: AGCCCCGAGATCCTGGCAGCCCCCGAGGCTCGGAGGAACCCGGCAAGAAGCGGCACGAGCGTCTCTTCCACCGGCAGGATGCGCTGTGGA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CCA 90 bp TCTGCTCCCAGCAGCTCCCTGGACCCGCTGCTGGAAGACAAGCCTTaGGGTCCGGGAAGGGGCCCTGGACCAGGAGGCCCTCCTGTGCTC +
Preference number: 5 (lower is better)
Translates to: SAPSSSLDPLLEDKP*GPGRGPGPGGPPVL
Trigger: GAGCACAGGAGGGCCTCCTGGTCCAGGGCCCCTTCCCGGACCCCAAGGCTTGTCTTCCAGCAGCGGGTCCAGGGAGCTGCTGGGAGCAGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCGAGTCCCGTGTAGGCTaGGCACGGCCTCGAGTGTCG +
Preference number: 5 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRESRVG*ARPRVS
Trigger: CGACACTCGAGGCCGTGCCAAGCCTACACGGGACTC...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCCAGTGCCGTGCGGCCTaGCGCATCGCGGGCCGCCAC +
Preference number: 5 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTQCRAA*RIAGRH
Trigger: GTGGCGGCCCGCGATGCGCAAGGCCGCACGGCACTG...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS TCA 90 bp CCGCAGCGGCAGAAGCTCCAGTCCCGGCGGTGCTCTTTGACCCCTTaGCCCTGGGTTTGCCCTCGCTTTCGGGCCATGACAGGCGGCTGC +
Preference number: 5 (lower is better)
Translates to: PQRQKLQSRRCSLTP*PWVCPRFRAMTGGC
Trigger: GCAGCCGCCTGTCATGGCCCGAAAGCGAGGGCAAACCCAGGGTCAAGGGGTCAAAGAGCACCGCCGGGACTGGAGCTTCTGCCGCTGCGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS GCA 90 bp GCACCCCCGGTGCCTGCGCTGCTGGTACTGATCCACAGCGCATCCTaGCGGTGGAAGAGACGCTCGTGCCGCTTCTTGCCGGGTTCCTCC +
Preference number: 5 (lower is better)
Translates to: APPVPALLVLIHSAS*RWKRRSCRFLPGSS
Trigger: GGAGGAACCCGGCAAGAAGCGGCACGAGCGTCTCTTCCACCGGCAGGATGCGCTGTGGATCAGTACCAGCAGCGCAGGCACCGGGGGTGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS GCA 90 bp CGTGCTGCCGCCCTCTCCCGGGCAGCCGTGCTGGAGAAGGATGTCTaGACACAGCTGGCTGCCAGCCTGGCGGGCATAGAACAGTGCCGT +
Preference number: 5 (lower is better)
Translates to: RAAALSRAAVLEKDV*TQLAASLAGIEQCR
Trigger: ACGGCACTGTTCTATGCCCGCCAGGCTGGCAGCCAGCTGTGTGCAGACATCCTTCTCCAGCACGGCTGCCCGGGAGAGGGCGGCAGCACG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 90 bp GGGAGGTGCGTAGTTCTGCTCCCAGCAGCTCCCTGGACCCGCTGCTaGAAGACAAGCCTTGGGGTCCGGGAAGGGGCCCTGGACCAGGAG +
Preference number: 5 (lower is better)
Translates to: GRCVVLLPAAPWTRC*KTSLGVREGALDQE
Trigger: CTCCTGGTCCAGGGCCCCTTCCCGGACCCCAAGGCTTGTCTTCCAGCAGCGGGTCCAGGGAGCTGCTGGGAGCAGAACTACGCACCTCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCCCCTTGACCCTGGGTTaGCCCTCGCTTTCGGGCCAT +
Preference number: 5 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRPLTLG*PSLSGH
Trigger: ATGGCCCGAAAGCGAGGGCAAACCCAGGGTCAAGGG...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTGCCCTTGGGGGCCGCTaGCCTGGGACTTTGACCGTT +
Preference number: 5 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGALGGR*PGTLTV
Trigger: AACGGTCAAAGTCCCAGGCAAGCGGCCCCCAAGGGC...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCTCCTTGACCAACCCGTaGATGCTGGCTGAGGGGCCG +
Preference number: 5 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRSLTNP*MLAEGP
Trigger: CGGCCCCTCAGCCAGCATCAACGGGTTGGTCAAGGA...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTCTGGCCCACGTGGGGTaGGGAGCTCCACAGTCCACA +
Preference number: 5 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGLAHVG*GAPQST
Trigger: TGTGGACTGTGGAGCTCCCAACCCCACGTGGGCCAG...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAGTGCCGTGCGGCCTaGCGCATCGCGGGCCGCCAC +
Preference number: 5 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGQCRAA*RIAGRH
Trigger: GTGGCGGCCCGCGATGCGCAAGGCCGCACGGCACTG...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGCAGTGCCGTGCGGCCTaGCGCATCGCGGGCCGCCAC +
Preference number: 5 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWQCRAA*RIAGRH
Trigger: GTGGCGGCCCGCGATGCGCAAGGCCGCACGGCACTG...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS GCA 90 bp CTGGTACTGATCCACAGCGCATCCTGCCGGTGGAAGAGACGCTCGTaGCGCTTCTTGCCGGGTTCCTCCGAGCCTCGGGGGCTGCCAGGA +
Preference number: 5 (lower is better)
Translates to: LVLIHSASCRWKRRS*RFLPGSSEPRGLPG
Trigger: TCCTGGCAGCCCCCGAGGCTCGGAGGAACCCGGCAAGAAGCGGCACGAGCGTCTCTTCCACCGGCAGGATGCGCTGTGGATCAGTACCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS GCA 90 bp AACAGCAGCTGTGTAATGACAACGTGGGCGAGCTCGGCCGCCAAGTaGAGCGGCGAGCGGAGCTGCGGGTCCTCCACGCTGGTGTCGAGC +
Preference number: 5 (lower is better)
Translates to: NSSCVMTTWASSAAK*SGERSCGSSTLVSS
Trigger: GCTCGACACCAGCGTGGAGGACCCGCAGCTCCGCTCGCCGCTGCACTTGGCGGCCGAGCTCGCCCACGTTGTCATTACACAGCTGCTGTT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 90 bp CCGGTGCCTGCGCTGCTGGTACTGATCCACAGCGCATCCTGCCGGTaGAAGAGACGCTCGTGCCGCTTCTTGCCGGGTTCCTCCGAGCCT +
Preference number: 5 (lower is better)
Translates to: PVPALLVLIHSASCR*KRRSCRFLPGSSEP
Trigger: AGGCTCGGAGGAACCCGGCAAGAAGCGGCACGAGCGTCTCTTCCACCGGCAGGATGCGCTGTGGATCAGTACCAGCAGCGCAGGCACCGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CCA 90 bp GCCACGTCTGCGCCATACCACAACAGCAGCTGTGTAATGACAACGTaGGCGAGCTCGGCCGCCAAGTGCAGCGGCGAGCGGAGCTGCGGG +
Preference number: 5 (lower is better)
Translates to: ATSAPYHNSSCVMTT*ASSAAKCSGERSCG
Trigger: CCCGCAGCTCCGCTCGCCGCTGCACTTGGCGGCCGAGCTCGCCCACGTTGTCATTACACAGCTGCTGTTGTGGTATGGCGCAGACGTGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTTCCTTGACCAACCCGTaGATGCTGGCTGAGGGGCCG +
Preference number: 5 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGSLTNP*MLAEGP
Trigger: CGGCCCCTCAGCCAGCATCAACGGGTTGGTCAAGGA...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCGCGCTTGGCTTCAGCTaGCACAGCCGAGCCTTCAGT +
Preference number: 5 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRALGFS*HSRAFS
Trigger: ACTGAAGGCTCGGCTGTGCAAGCTGAAGCCAAGCGC...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCGAGTTTCCCTTTGCGTaGCGGATCGCCTGGATGGCC +
Preference number: 5 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPREFPFA*RIAWMA
Trigger: GGCCATCCAGGCGATCCGCAACGCAAAGGGAAACTC...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACCACAGCGGCCCACAGTaGGCGGCCCAGCGGCTCCTC +
Preference number: 5 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYHSGPQ*AAQRLL
Trigger: GAGGAGCCGCTGGGCCGCCAACTGTGGGCCGCTGTG...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 90 bp CGAGCATCACCCACCACTCGAGGAGATGATGCACTGATCCTGTCTTaGGTCCCAACCAGAGCCAGGGCCAGACCTCCTCGCCCCTCCCCC +
Preference number: 5 (lower is better)
Translates to: RASPTTRGDDALILS*VPTRARARPPRPSP
Trigger: GGGGGAGGGGCGAGGAGGTCTGGCCCTGGCTCTGGTTGGGACCCAAGACAGGATCAGTGCATCATCTCCTCGAGTGGTGGGTGATGCTCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGCGCTCGTGCCGCTTCTaGCCGGGTTCCTCCGAGCCT +
Preference number: 5 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRRSCRF*PGSSEP
Trigger: AGGCTCGGAGGAACCCGGCAAGAAGCGGCACGAGCG...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCGCTCGTGCCGCTTCTaGCCGGGTTCCTCCGAGCCT +
Preference number: 5 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGRSCRF*PGSSEP
Trigger: AGGCTCGGAGGAACCCGGCAAGAAGCGGCACGAGCG...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTTGCCCCCGCCGGCTTaGGCTCCACTAGTGGTCACG +
Preference number: 5 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPLPPPA*APLVVT
Trigger: CGTGACCACTAGTGGAGCCAAAGCCGGCGGGGGCAA...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGGCTGGAAGACAAGCCTaGGGGTCCGGGAAGGGGCCC +
Preference number: 5 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGAGRQA*GSGKGP
Trigger: GGGCCCCTTCCCGGACCCCAAGGCTTGTCTTCCAGC...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAGCTGGAAGACAAGCCTaGGGGTCCGGGAAGGGGCCC +
Preference number: 5 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWAAGRQA*GSGKGP
Trigger: GGGCCCCTTCCCGGACCCCAAGGCTTGTCTTCCAGC...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTAGCAGGAAGCTCTGTTaGATGGGGATGGCTCGCCCA +
Preference number: 5 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGSRKLC*MGMARP
Trigger: TGGGCGAGCCATCCCCATCAAACAGAGCTTCCTGCT...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCGCCCTTGGGGGCCGCTaGCCTGGGACTTTGACCGTT +
Preference number: 5 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTALGGR*PGTLTV
Trigger: AACGGTCAAAGTCCCAGGCAAGCGGCCCCCAAGGGC...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTCTGTCAGTGCGCAGCTaGACCTTGCTGCTCTCACAG +
Preference number: 5 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGLSVRS*TLLLSQ
Trigger: CTGTGAGAGCAGCAAGGTCAAGCTGCGCACTGACAG...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCCTGGCCCACGTGGGGTaGGGAGCTCCACAGTCCACA +
Preference number: 5 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTLAHVG*GAPQST
Trigger: TGTGGACTGTGGAGCTCCCAACCCCACGTGGGCCAG...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCGAGTCCCGTGTAGGCTaGGCACGGCCTCGAGTGTCG +
Preference number: 5 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPESRVG*ARPRVS
Trigger: CGACACTCGAGGCCGTGCCAAGCCTACACGGGACTC...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGTTGCCCCCGCCGGCTTaGGCTCCACTAGTGGTCACG +
Preference number: 5 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGLPPPA*APLVVT
Trigger: CGTGACCACTAGTGGAGCCAAAGCCGGCGGGGGCAA...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGAGTCCCGTGTAGGCTaGGCACGGCCTCGAGTGTCG +
Preference number: 5 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWESRVG*ARPRVS
Trigger: CGACACTCGAGGCCGTGCCAAGCCTACACGGGACTC...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTAGCAGCTGCTCATACTaGGCGCGAATCCACGACTCA +
Preference number: 5 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGSSCSY*ARIHDS
Trigger: TGAGTCGTGGATTCGCGCCAAGTATGAGCAGCTGCT...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS TCA 90 bp GAGCCCTGGCTCGAGCATCACCCACCACTCGAGGAGATGATGCACTaGTCCTGTCTTGGGTCCCAACCAGAGCCAGGGCCAGACCTCCTC +
Preference number: 5 (lower is better)
Translates to: EPWLEHHPPLEEMMH*SCLGSQPEPGPDLL
Trigger: GAGGAGGTCTGGCCCTGGCTCTGGTTGGGACCCAAGACAGGATCAGTGCATCATCTCCTCGAGTGGTGGGTGATGCTCGAGCCAGGGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS TCA 90 bp CGTGCACAGAGCCCTGGCTCGAGCATCACCCACCACTCGAGGAGATaGTGCACTGATCCTGTCTTGGGTCCCAACCAGAGCCAGGGCCAG +
Preference number: 5 (lower is better)
Translates to: RAQSPGSSITHHSRR*CTDPVLGPNQSQGQ
Trigger: CTGGCCCTGGCTCTGGTTGGGACCCAAGACAGGATCAGTGCATCATCTCCTCGAGTGGTGGGTGATGCTCGAGCCAGGGCTCTGTGCACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCACGGTCTTGAAAGGCTaGGGAGCAGGTGGAGGAGGC +
Preference number: 5 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTTVLKG*GAGGGG
Trigger: GCCTCCTCCACCTGCTCCCAAGCCTTTCAAGACCGT...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTGGCGCAGTTCGGGAATaGATCGGCTCAAAGTCCATT +
Preference number: 5 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGGAVRE*IGSKSI
Trigger: AATGGACTTTGAGCCGATCAATTCCCGAACTGCGCC...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCTCCCGGTGTCCAACGTaGGGTGAGGATGGGAGGGAA +
Preference number: 5 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTSRCPT*GEDGRE
Trigger: TTCCCTCCCATCCTCACCCAACGTTGGACACCGGGA...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCGTGCGCAGCTTGACCTaGCTGCTCTCACAGCACTGC +
Preference number: 5 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPVRSLT*LLSQHC
Trigger: GCAGTGCTGTGAGAGCAGCAAGGTCAAGCTGCGCAC...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACCTGGCCCACGTGGGGTaGGGAGCTCCACAGTCCACA +
Preference number: 5 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYLAHVG*GAPQST
Trigger: TGTGGACTGTGGAGCTCCCAACCCCACGTGGGCCAG...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS TCA 90 bp CATCTGGACGGTGCTCATATCCTTGACCAACCCGTTGATGCTGGCTaGGGGGCCGAAAGCAGAGATAGCCCTTGGGGGCCGCTTGCCTGG +
Preference number: 5 (lower is better)
Translates to: HLDGAHILDQPVDAG*GAESRDSPWGPLAW
Trigger: CCAGGCAAGCGGCCCCCAAGGGCTATCTCTGCTTTCGGCCCCTCAGCCAGCATCAACGGGTTGGTCAAGGATATGAGCACCGTCCAGATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 90 bp TTTGGCTCCACTAGTGGTCACGGTCTTGAAAGGCTTGGGAGCAGGTaGAGGAGGCGCCACCTTGAGCCTTCGGCTACCGGTGCCAGGATG +
Preference number: 5 (lower is better)
Translates to: FGSTSGHGLERLGSR*RRRHLEPSATGARM
Trigger: CATCCTGGCACCGGTAGCCGAAGGCTCAAGGTGGCGCCTCCTCCACCTGCTCCCAAGCCTTTCAAGACCGTGACCACTAGTGGAGCCAAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGGGTACCGACTCGAGCTaGACCAGGGTCAGCGAGATG +
Preference number: 5 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRGTDSS*TRVSEM
Trigger: CATCTCGCTGACCCTGGTCAAGCTCGAGTCGGTACC...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGGGAGGAGGCGCCACCTaGAGCCTTCGGCTACCGGTG +
Preference number: 5 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQGGGAT*SLRLPV
Trigger: CACCGGTAGCCGAAGGCTCAAGGTGGCGCCTCCTCC...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGACGGTCTTGAAAGGCTaGGGAGCAGGTGGAGGAGGC +
Preference number: 5 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGTVLKG*GAGGGG
Trigger: GCCTCCTCCACCTGCTCCCAAGCCTTTCAAGACCGT...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGTCCCGGTGTCCAACGTaGGGTGAGGATGGGAGGGAA +
Preference number: 5 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGSRCPT*GEDGRE
Trigger: TTCCCTCCCATCCTCACCCAACGTTGGACACCGGGA...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGTGCGCAGCTTGACCTaGCTGCTCTCACAGCACTGC +
Preference number: 5 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWVRSLT*LLSQHC
Trigger: GCAGTGCTGTGAGAGCAGCAAGGTCAAGCTGCGCAC...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS TCA 90 bp GTGGCCCCCGTTACTAGCCTGCCCAGCTACAGGAGTAGATGCAGCTaGATGGCTTGGCGAGCTAGGCAGGGATTTGCAAGCAGCCAGGAG +
Preference number: 5 (lower is better)
Translates to: VAPVTSLPSYRSRCS*MAWRARQGFASSQE
Trigger: CTCCTGGCTGCTTGCAAATCCCTGCCTAGCTCGCCAAGCCATTCAGCTGCATCTACTCCTGTAGCTGGGCAGGCTAGTAACGGGGGCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACGGTACCGACTCGAGCTaGACCAGGGTCAGCGAGATG +
Preference number: 5 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYGTDSS*TRVSEM
Trigger: CATCTCGCTGACCCTGGTCAAGCTCGAGTCGGTACC...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACACCCTTGACCCTGGGTTaGCCCTCGCTTTCGGGCCAT +
Preference number: 5 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTPLTLG*PSLSGH
Trigger: ATGGCCCGAAAGCGAGGGCAAACCCAGGGTCAAGGG...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGAGCAGGAAGCTCTGTTaGATGGGGATGGCTCGCCCA +
Preference number: 5 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGSRKLC*MGMARP
Trigger: TGGGCGAGCCATCCCCATCAAACAGAGCTTCCTGCT...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGGCCCTTGGGGGCCGCTaGCCTGGGACTTTGACCGTT +
Preference number: 5 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQALGGR*PGTLTV
Trigger: AACGGTCAAAGTCCCAGGCAAGCGGCCCCCAAGGGC...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACGCGCTTGGCTTCAGCTaGCACAGCCGAGCCTTCAGT +
Preference number: 5 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYALGFS*HSRAFS
Trigger: ACTGAAGGCTCGGCTGTGCAAGCTGAAGCCAAGCGC...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCGTGCGCAGCTTGACCTaGCTGCTCTCACAGCACTGC +
Preference number: 5 (lower is better)
Translates to: PNTLEPGTAARECPPTNTVRSLT*LLSQHC
Trigger: GCAGTGCTGTGAGAGCAGCAAGGTCAAGCTGCGCAC...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCTGTCAGTGCGCAGCTaGACCTTGCTGCTCTCACAG +
Preference number: 5 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGLSVRS*TLLLSQ
Trigger: CTGTGAGAGCAGCAAGGTCAAGCTGCGCACTGACAG...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGAGGTCGAGTTTCCCTTaGCGTTGCGGATCGCCTGGA +
Preference number: 5 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRRSSFP*RCGSPG
Trigger: TCCAGGCGATCCGCAACGCAAAGGGAAACTCGACCT...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAAGGTCGAGTTTCCCTTaGCGTTGCGGATCGCCTGGA +
Preference number: 5 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWARSSFP*RCGSPG
Trigger: TCCAGGCGATCCGCAACGCAAAGGGAAACTCGACCT...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACACGGCTCAGAGCTTGCTaGGCCACCTCATGTCGCCTG +
Preference number: 5 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTRLRAC*ATSCRL
Trigger: CAGGCGACATGAGGTGGCCAAGCAAGCTCTGAGCCG...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000239120.2
CDS CCA 90 bp TCCTGGCTATTAACCACAGCCTCTCGTACGCTGTCCAGTGAGGCCTaGATGCCAGCTTGGAGTTCGGGGTCACTCACTCTCTCTGCCAGC +
Preference number: 5 (lower is better)
Translates to: SWLLTTASRTLSSEA*MPAWSSGSLTLSAS
Trigger: GCTGGCAGAGAGAGTGAGTGACCCCGAACTCCAAGCTGGCATCCAGGCCTCACTGGACAGCGTACGAGAGGCTGTGGTTAATAGCCAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGCTAGTGGTCACGGTCTaGAAAGGCTTGGGAGCAGGT +
Preference number: 5 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRLVVTV*KGLGAG
Trigger: ACCTGCTCCCAAGCCTTTCAAGACCGTGACCACTAG...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCTCCAAGGTCTTACTCTaGCCTTTCCGAGGGGACAAC +
Preference number: 5 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTSKVLL*PFRGDN
Trigger: GTTGTCCCCTCGGAAAGGCAAGAGTAAGACCTTGGA...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAGGCCCTCCTGTGCTCTaGGTGAAGATACCGCTGATA +
Preference number: 5 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWAGPPVL*VKIPLI
Trigger: TATCAGCGGTATCTTCACCAAGAGCACAGGAGGGCC...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCGGCGCAGTTCGGGAATaGATCGGCTCAAAGTCCATT +
Preference number: 5 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTGAVRE*IGSKSI
Trigger: AATGGACTTTGAGCCGATCAATTCCCGAACTGCGCC...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CCCGTGGGGCGGGGTGCGGACTGGAGAGGTGAGTGGGTGCATCTGTCCAACGGTACTAGCATCTCCTTCTaGTACTGCTCACTCTCAATC +
Preference number: 5 (lower is better)
Translates to: PVGRGADWRGEWVHLSNGTSISF*YCSLSI
Trigger: GATTGAGAGTGAGCAGTACAAGAAGGAGATGCTAGT...ACCGTTGGACAGATGCACCCACTCACCTCTCCAGTCCGCACCCCGCCCCACGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTACCGCAAGCAGCCAGGAGTaGTTGTTGTTTGCGCAAGGT +
Preference number: 5 (lower is better)
Translates to: HRYAVTVTDTTREHPHPTASSQE*LLFAQG
Trigger: ACCTTGCGCAAACAACAACAACTCCTGGCTGCTTGC...GGTAGGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCGCAAGCAGCCAGGAGTaGTTGTTGTTTGCGCAAGGT +
Preference number: 5 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPASSQE*LLFAQG
Trigger: ACCTTGCGCAAACAACAACAACTCCTGGCTGCTTGC...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGAGCTAGGCAGGGATTaGCAAGCAGCCAGGAGTTGT +
Preference number: 5 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWELGRD*QAARSC
Trigger: ACAACTCCTGGCTGCTTGCAAATCCCTGCCTAGCTC...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACATCCCGGTGTCCAACGTaGGGTGAGGATGGGAGGGAA +
Preference number: 5 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTSRCPT*GEDGRE
Trigger: TTCCCTCCCATCCTCACCCAACGTTGGACACCGGGA...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp GAGTGGGTGCATCTGTCCAACGGTCCACCCGGTGTAGTCGTGCCCGGCCCGCGCTCTTTGTTCAAGGAATaGCCACTTCGTTTTAGCAGG +
Preference number: 5 (lower is better)
Translates to: EWVHLSNGPPGVVVPGPRSLFKE*PLRFSR
Trigger: CCTGCTAAAACGAAGTGGCAATTCCTTGAACAAAGA...GCGCGGGCCGGGCACGACTACACCGGGTGGACCGTTGGACAGATGCACCCACTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCGGCTTCAAGAGGTGCTaGGATGTCTGGTCTGTTGGA +
Preference number: 5 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPGFKRC*DVWSVG
Trigger: TCCAACAGACCAGACATCCAAGCACCTCTTGAAGCC...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAGAGTTTCCCTTTGCGTaGCGGATCGCCTGGATGGCC +
Preference number: 5 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTEFPFA*RIAWMA
Trigger: GGCCATCCAGGCGATCCGCAACGCAAAGGGAAACTC...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAGAGTCGGCTCAGAGCTaGCTTGGCCACCTCATGTCG +
Preference number: 5 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTESAQS*LGHLMS
Trigger: CGACATGAGGTGGCCAAGCAAGCTCTGAGCCGACTC...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000239120.2
CDS GCA 90 bp TCGGTGCTAAGGGCACGGGCCAAATTCCGGTCTGGCTTCAAGAGGTaGTTGGATGTCTGGTCTGTTGGAAGCTGCAGGGAACTGGGGCTA +
Preference number: 5 (lower is better)
Translates to: SVLRARAKFRSGFKR*LDVWSVGSCRELGL
Trigger: TAGCCCCAGTTCCCTGCAGCTTCCAACAGACCAGACATCCAAGCACCTCTTGAAGCCAGACCGGAATTTGGCCCGTGCCCTTAGCACCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 90 bp CCCCCGTTACTAGCCTGCCCAGCTACAGGAGTAGATGCAGCTGAATaGCTTGGCGAGCTAGGCAGGGATTTGCAAGCAGCCAGGAGTTGT +
Preference number: 5 (lower is better)
Translates to: PPLLACPATGVDAAE*LGELGRDLQAARSC
Trigger: ACAACTCCTGGCTGCTTGCAAATCCCTGCCTAGCTCGCCAAGCCATTCAGCTGCATCTACTCCTGTAGCTGGGCAGGCTAGTAACGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACGGCCCTCCTGTGCTCTaGGTGAAGATACCGCTGATA +
Preference number: 5 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYGPPVL*VKIPLI
Trigger: TATCAGCGGTATCTTCACCAAGAGCACAGGAGGGCC...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAAGCCAGGAGTTGTTGTaGTTTGCGCAAGGTCACCAC +
Preference number: 5 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWASQELL*FAQGHH
Trigger: GTGGTGACCTTGCGCAAACAACAACAACTCCTGGCT...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGAGCCAGGAGTTGTTGTaGTTTGCGCAAGGTCACCAC +
Preference number: 5 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWSQELL*FAQGHH
Trigger: GTGGTGACCTTGCGCAAACAACAACAACTCCTGGCT...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGAGCCAGGAGTTGTTGTaGTTTGCGCAAGGTCACCAC +
Preference number: 5 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGSQELL*FAQGHH
Trigger: GTGGTGACCTTGCGCAAACAACAACAACTCCTGGCT...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGAGCAGCCAGGAGTTGTaGTTGTTTGCGCAAGGTCAC +
Preference number: 5 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWSSQEL*LFAQGH
Trigger: GTGACCTTGCGCAAACAACAACAACTCCTGGCTGCT...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCAAGCAGCCAGGAGTTGTaGTTGTTTGCGCAAGGTCAC +
Preference number: 5 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWASSQEL*LFAQGH
Trigger: GTGACCTTGCGCAAACAACAACAACTCCTGGCTGCT...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCGAGCTAGGCAGGGATTaGCAAGCAGCCAGGAGTTGT +
Preference number: 5 (lower is better)
Translates to: PNTLEPGTAARECPPTNTELGRD*QAARSC
Trigger: ACAACTCCTGGCTGCTTGCAAATCCCTGCCTAGCTC...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAAGCAGGAAGCTCTGTTaGATGGGGATGGCTCGCCCA +
Preference number: 5 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTSRKLC*MGMARP
Trigger: TGGGCGAGCCATCCCCATCAAACAGAGCTTCCTGCT...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGGGCTTCAAGAGGTGCTaGGATGTCTGGTCTGTTGGA +
Preference number: 5 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGGFKRC*DVWSVG
Trigger: TCCAACAGACCAGACATCCAAGCACCTCTTGAAGCC...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGGAGTTTCCCTTTGCGTaGCGGATCGCCTGGATGGCC +
Preference number: 5 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQEFPFA*RIAWMA
Trigger: GGCCATCCAGGCGATCCGCAACGCAAAGGGAAACTC...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAAGGTCGAGTTTCCCTTaGCGTTGCGGATCGCCTGGA +
Preference number: 5 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTRSSFP*RCGSPG
Trigger: TCCAGGCGATCCGCAACGCAAAGGGAAACTCGACCT...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS GCA 90 bp CACTGGGTCCTGGGTGTAAGTCACTATTGTCCAAGGTCTTACTCTTaGCTTTCCGAGGGGACAACTTCCCTCTGGTTCCAGCCCCAGCCC +
Preference number: 5 (lower is better)
Translates to: HWVLGVSHYCPRSYS*LSEGTTSLWFQPQP
Trigger: GGGCTGGGGCTGGAACCAGAGGGAAGTTGTCCCCTCGGAAAGGCAAGAGTAAGACCTTGGACAATAGTGACTTACACCCAGGACCCAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CCA 90 bp AGATGGGGTACAGTCGGTGCTAAGGGCACGGGCCAAATTCCGGTCTaGCTTCAAGAGGTGCTTGGATGTCTGGTCTGTTGGAAGCTGCAG +
Preference number: 5 (lower is better)
Translates to: RWGTVGAKGTGQIPV*LQEVLGCLVCWKLQ
Trigger: CTGCAGCTTCCAACAGACCAGACATCCAAGCACCTCTTGAAGCCAGACCGGAATTTGGCCCGTGCCCTTAGCACCGACTGTACCCCATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 90 bp ACACCCAGGCGCAGTTCGGGAATTGATCGGCTCAAAGTCCATTCCTaGCTATTAACCACAGCCTCTCGTACGCTGTCCAGTGAGGCCTGG +
Preference number: 5 (lower is better)
Translates to: TPRRSSGIDRLKVHS*LLTTASRTLSSEAW
Trigger: CCAGGCCTCACTGGACAGCGTACGAGAGGCTGTGGTTAATAGCCAGGAATGGACTTTGAGCCGATCAATTCCCGAACTGCGCCTGGGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGATAAACTTGAGCATCTaGCGGTCACGAGTGGACGCT +
Preference number: 5 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRINLSI*RSRVDA
Trigger: AGCGTCCACTCGTGACCGCAAGATGCTCAAGTTTAT...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCGGCGCAGTTCGGGAATaGATCGGCTCAAAGTCCATT +
Preference number: 5 (lower is better)
Translates to: PNTLEPGTAARECPPTNTGAVRE*IGSKSI
Trigger: AATGGACTTTGAGCCGATCAATTCCCGAACTGCGCC...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGAGGAGTTGTTGTTGTTaGCGCAAGGTCACCACCTTC +
Preference number: 5 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGRSCCC*RKVTTF
Trigger: GAAGGTGGTGACCTTGCGCAAACAACAACAACTCCT...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGAGGAGTTGTTGTTGTTaGCGCAAGGTCACCACCTTC +
Preference number: 5 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWRSCCC*RKVTTF
Trigger: GAAGGTGGTGACCTTGCGCAAACAACAACAACTCCT...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAGAGCTAGGCAGGGATTaGCAAGCAGCCAGGAGTTGT +
Preference number: 5 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTELGRD*QAARSC
Trigger: ACAACTCCTGGCTGCTTGCAAATCCCTGCCTAGCTC...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGCTGTCAGTGCGCAGCTaGACCTTGCTGCTCTCACAG +
Preference number: 5 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQLSVRS*TLLLSQ
Trigger: CTGTGAGAGCAGCAAGGTCAAGCTGCGCACTGACAG...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAAGCAGCTGCTCATACTaGGCGCGAATCCACGACTCA +
Preference number: 5 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTSSCSY*ARIHDS
Trigger: TGAGTCGTGGATTCGCGCCAAGTATGAGCAGCTGCT...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 90 bp ACACCCAGGCGCAGTTCGGGAATTGATCGGCTCAAAGTCCATTCCTaGCTATTAACCACAGCCTTAGGGGAGGTGCGTAGTTCTGCTCCC +
Preference number: 5 (lower is better)
Translates to: TPRRSSGIDRLKVHS*LLTTALGEVRSSAP
Trigger: GGGAGCAGAACTACGCACCTCCCCTAAGGCTGTGGTTAATAGCCAGGAATGGACTTTGAGCCGATCAATTCCCGAACTGCGCCTGGGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCGGGTGTAAGTCACTATaGTCCAAGGTCTTACTCTTG +
Preference number: 5 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPGCKSL*SKVLLL
Trigger: CAAGAGTAAGACCTTGGACAATAGTGACTTACACCC...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGATACCGCTGATAAACTaGAGCATCTTGCGGTCACGA +
Preference number: 5 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRIPLIN*SILRSR
Trigger: TCGTGACCGCAAGATGCTCAAGTTTATCAGCGGTAT...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAGGCTTCAAGAGGTGCTaGGATGTCTGGTCTGTTGGA +
Preference number: 5 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTGFKRC*DVWSVG
Trigger: TCCAACAGACCAGACATCCAAGCACCTCTTGAAGCC...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CAGTCACAGGTACGCAGTCACGGTCACAGACACAACCCGAGAGCACCCCCACCCTTTAGTTTCCACATTTaGCGCTTGGCTTCAGCTTGC +
Preference number: 5 (lower is better)
Translates to: QSQVRSHGHRHNPRAPPPFSFHI*RLASAC
Trigger: GCAAGCTGAAGCCAAGCGCAAAATGTGGAAACTAAA...GGGTGGGGGTGCTCTCGGGTTGTGTCTGTGACCGTGACTGCGTACCTGTGACTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGAGCAGCTGCTCATACTaGGCGCGAATCCACGACTCA +
Preference number: 5 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQSSCSY*ARIHDS
Trigger: TGAGTCGTGGATTCGCGCCAAGTATGAGCAGCTGCT...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAGTTTTCCTCTTCAGCTaGCACAGCCGAGCCTTCAGT +
Preference number: 5 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTVFLFS*HSRAFS
Trigger: ACTGAAGGCTCGGCTGTGCAAGCTGAAGAGGAAAAC...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000217941.2
CDS CCA 90 bp CTCTCAATCTTCTCCAGCACCTGGTATGAACCCGTGAGGAATCTATaGATGAGGGACGACTTCCCACTCCTGACATCACCCAGCACACCC +
Preference number: 5 (lower is better)
Translates to: LSIFSSTWYEPVRNL*MRDDFPLLTSPSTP
Trigger: GGGTGTGCTGGGTGATGTCAGGAGTGGGAAGTCGTCCCTCATCCATAGATTCCTCACGGGTTCATACCAGGTGCTGGAGAAGATTGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACAATAAACTTGAGCATCTaGCGGTCACGAGTGGACGCT +
Preference number: 5 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTINLSI*RSRVDA
Trigger: AGCGTCCACTCGTGACCGCAAGATGCTCAAGTTTAT...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp ACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGACTAGCATCTCCTTCTaGTACTGCTCACTCTCAATC +
Preference number: 5 (lower is better)
Translates to: TPHGPFHGKGWGPLHLHGTSISF*YCSLSI
Trigger: GATTGAGAGTGAGCAGTACAAGAAGGAGATGCTAGT...CCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGAGCAGCCAGGAGTTGTaGTTGTTTGCGCAAGGTCAC +
Preference number: 5 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQSSQEL*LFAQGH
Trigger: GTGACCTTGCGCAAACAACAACAACTCCTGGCTGCT...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCCAGCAGGTAGACCCAGGAACAAGTCCATCTCTTaGCCATGTGTACTGTGGATG +
Preference number: 5 (lower is better)
Translates to: RNSCKGVPTYKHPAGRPRNKSIS*PCVLWM
Trigger: CATCCACAGTACACATGGCAAAGAGATGGACTTGTT...CCTGGGTCTACCTGCTGGGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CACTCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGAACAAGTCCATCTCTTaGCCATGTGTACTGTGGATG +
Preference number: 5 (lower is better)
Translates to: HSSWSLSRKGLGTPPPPWNKSIS*PCVLWM
Trigger: CATCCACAGTACACATGGCAAAGAGATGGACTTGTT...CCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACAAACACCGGGTGTAAGTCACTATaGTCCAAGGTCTTACTCTTG +
Preference number: 5 (lower is better)
Translates to: PNTLEPGTAARECPPTNTGCKSL*SKVLLL
Trigger: CAAGAGTAAGACCTTGGACAATAGTGACTTACACCC...GGTGTTTGTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS-3UTR CAA 90 bp CTCCTGTTCCAATCCTTCTCCCTCTACCCCATGATCGTAAGGGGAAGGACCCAGAGGAGTTGTTGTTGTTaGCGCAAGGTCACCACCTTC +
Preference number: 5 (lower is better)
Translates to: LLFQSFSLYPMIVRGRTQRSCCC*RKVTTF
Trigger: GAAGGTGGTGACCTTGCGCAAACAACAACAACTCCT...CTGGGTCCTTCCCCTTACGATCATGGGGTAGAGGGAGAAGGATTGGAACAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp TCCTCATGGTCCCTTTCACGGAAAGGGTTGGGGACCCCTCCACCTCCATGGGCATCTTTGTTCAAGGAATaGCCACTTCGTTTTAGCAGG +
Preference number: 5 (lower is better)
Translates to: SSWSLSRKGLGTPPPPWASLFKE*PLRFSR
Trigger: CCTGCTAAAACGAAGTGGCAATTCCTTGAACAAAGA...TGCCCATGGAGGTGGAGGGGTCCCCAACCCTTTCCGTGAAAGGGACCATGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp AGCAAGTCCAAACACCTTGGAGCCCGGAACAGCTGCAAGGGAGTGCCCACCTACTCTTTGTTCAAGGAATaGCCACTTCGTTTTAGCAGG +
Preference number: 5 (lower is better)
Translates to: SKSKHLGARNSCKGVPTYSLFKE*PLRFSR
Trigger: CCTGCTAAAACGAAGTGGCAATTCCTTGAACAAAGA...GTAGGTGGGCACTCCCTTGCAGCTGTTCCGGGCTCCAAGGTGTTTGGACTTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS-3UTR CAA 90 bp CTCTCCCTTTCTGGGGATGGGGGCCAGGACCTTAAAGTCCTCCCAACCACTACATTTAGTTTCCACATTTaGCGCTTGGCTTCAGCTTGC +
Preference number: 5 (lower is better)
Translates to: LSLSGDGGQDLKVLPTTTFSFHI*RLASAC
Trigger: GCAAGCTGAAGCCAAGCGCAAAATGTGGAAACTAAA...TGTAGTGGTTGGGAGGACTTTAAGGTCCTGGCCCCCATCCCCAGAAAGGGAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000239120.2
CDS CCA 72 bp GCGTGGGCCAGAAGCAGCAGAACGGCGGCCACGTCCTaGGCCTCCACAGCGGCCCACAGTTGGCGGCCCAGC +
Preference number: 6 (lower is better)
Translates to: AWARSSRTAATS*ASTAAHSWRPS
Trigger: GCTGGGCCGCCAACTGTGGGCCGCTGTGGAGGCCCAGGACGTGGCCGCCGTTCTGCTGCTTCTGGCCCACGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 72 bp AGTGCAGCGGCGAGCGGAGCTGCGGGTCCTCCACGCTaGTGTCGAGCGGCCCATGTCGCGCGTGGGCCAGAA +
Preference number: 6 (lower is better)
Translates to: SAAASGAAGPPR*CRAAHVARGPE
Trigger: TTCTGGCCCACGCGCGACATGGGCCGCTCGACACCAGCGTGGAGGACCCGCAGCTCCGCTCGCCGCTGCACT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS GCA 72 bp TGGGTTTGCCCTCGCTTTCGGGCCATGACAGGCGGCTaGCTGCGCCCTTGCCCCCGCCGGCTTTGGCTCCAC +
Preference number: 6 (lower is better)
Translates to: WVCPRFRAMTGG*LRPCPRRLWLH
Trigger: GTGGAGCCAAAGCCGGCGGGGGCAAGGGCGCAGGCAGCCGCCTGTCATGGCCCGAAAGCGAGGGCAAACCCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS GCA 72 bp ACACAGCTGGCTGCCAGCCTGGCGGGCATAGAACAGTaGCGTGCGGCCTTGCGCATCGCGGGCCGCCACGTC +
Preference number: 6 (lower is better)
Translates to: TQLAASLAGIEQ*RAALRIAGRHV
Trigger: GACGTGGCGGCCCGCGATGCGCAAGGCCGCACGGCACTGTTCTATGCCCGCCAGGCTGGCAGCCAGCTGTGT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 72 bp CAGCAGCTCCCTGGACCCGCTGCTGGAAGACAAGCCTaGGGGTCCGGGAAGGGGCCCTGGACCAGGAGGCCC +
Preference number: 6 (lower is better)
Translates to: QQLPGPAAGRQA*GSGKGPWTRRP
Trigger: GGGCCTCCTGGTCCAGGGCCCCTTCCCGGACCCCAAGGCTTGTCTTCCAGCAGCGGGTCCAGGGAGCTGCTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CAA 72 bp GCCAGCCTGGCGGGCATAGAACAGTGCCGTGCGGCCTaGCGCATCGCGGGCCGCCACGTCTGCGCCATACCA +
Preference number: 6 (lower is better)
Translates to: ASLAGIEQCRAA*RIAGRHVCAIP
Trigger: TGGTATGGCGCAGACGTGGCGGCCCGCGATGCGCAAGGCCGCACGGCACTGTTCTATGCCCGCCAGGCTGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 90 bp ATCCACAGCGCATCCTGCCGGTGGAAGAGACGCTCGTGCCGCTTCTaGCCGGGTTCCTCCGAGCCTCGGGGGCTGCCAGGATCTCGGGGC +
Preference number: 6 (lower is better)
Translates to: IHSASCRWKRRSCRF*PGSSEPRGLPGSRG
Trigger: GCCCCGAGATCCTGGCAGCCCCCGAGGCTCGGAGGAACCCGGCAAGAAGCGGCACGAGCGTCTCTTCCACCGGCAGGATGCGCTGTGGAT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CAA 90 bp CAGCTGGCTGCCAGCCTGGCGGGCATAGAACAGTGCCGTGCGGCCTaGCGCATCGCGGGCCGCCACGTCTGCGCCATACCACAACAGCAG +
Preference number: 6 (lower is better)
Translates to: QLAASLAGIEQCRAA*RIAGRHVCAIPQQQ
Trigger: CTGCTGTTGTGGTATGGCGCAGACGTGGCGGCCCGCGATGCGCAAGGCCGCACGGCACTGTTCTATGCCCGCCAGGCTGGCAGCCAGCTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS TCA 72 bp GGGGCTCCGCACCCCCGGTGCCTGCGCTGCTGGTACTaGTCCACAGCGCATCCTGCCGGTGGAAGAGACGCT +
Preference number: 6 (lower is better)
Translates to: GAPHPRCLRCWY*STAHPAGGRDA
Trigger: AGCGTCTCTTCCACCGGCAGGATGCGCTGTGGATCAGTACCAGCAGCGCAGGCACCGGGGGTGCGGAGCCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS GCA 72 bp CGGCCCACAGTTGGCGGCCCAGCGGCTCCTCCGTGGTaGCCAGAGGCGCCAGGAACAGCAGCTGCTCATACT +
Preference number: 6 (lower is better)
Translates to: RPTVGGPAAPPW*PEAPGTAAAHT
Trigger: AGTATGAGCAGCTGCTGTTCCTGGCGCCTCTGGGCACCACGGAGGAGCCGCTGGGCCGCCAACTGTGGGCCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 72 bp AGCAGCTCCCTGGACCCGCTGCTGGAAGACAAGCCTTaGGGTCCGGGAAGGGGCCCTGGACCAGGAGGCCCT +
Preference number: 6 (lower is better)
Translates to: SSSLDPLLEDKP*GPGRGPGPGGP
Trigger: AGGGCCTCCTGGTCCAGGGCCCCTTCCCGGACCCCAAGGCTTGTCTTCCAGCAGCGGGTCCAGGGAGCTGCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CAA 72 bp GCATCCTGCCGGTGGAAGAGACGCTCGTGCCGCTTCTaGCCGGGTTCCTCCGAGCCTCGGGGGCTGCCAGGA +
Preference number: 6 (lower is better)
Translates to: ASCRWKRRSCRF*PGSSEPRGLPG
Trigger: TCCTGGCAGCCCCCGAGGCTCGGAGGAACCCGGCAAGAAGCGGCACGAGCGTCTCTTCCACCGGCAGGATGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CAA 90 bp TTCTGCTCCCAGCAGCTCCCTGGACCCGCTGCTGGAAGACAAGCCTaGGGGTCCGGGAAGGGGCCCTGGACCAGGAGGCCCTCCTGTGCT +
Preference number: 6 (lower is better)
Translates to: FCSQQLPGPAAGRQA*GSGKGPWTRRPSCA
Trigger: AGCACAGGAGGGCCTCCTGGTCCAGGGCCCCTTCCCGGACCCCAAGGCTTGTCTTCCAGCAGCGGGTCCAGGGAGCTGCTGGGAGCAGAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS GCA 72 bp CATCCTGCCGGTGGAAGAGACGCTCGTGCCGCTTCTTaGCGGGTTCCTCCGAGCCTCGGGGGCTGCCAGGAT +
Preference number: 6 (lower is better)
Translates to: HPAGGRDARAAS*RVPPSLGGCQD
Trigger: ATCCTGGCAGCCCCCGAGGCTCGGAGGAACCCGGCAAGAAGCGGCACGAGCGTCTCTTCCACCGGCAGGATG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS GCA 72 bp ATCCACAGCGCATCCTGCCGGTGGAAGAGACGCTCGTaGCGCTTCTTGCCGGGTTCCTCCGAGCCTCGGGGG +
Preference number: 6 (lower is better)
Translates to: IHSASCRWKRRS*RFLPGSSEPRG
Trigger: CCCCCGAGGCTCGGAGGAACCCGGCAAGAAGCGGCACGAGCGTCTCTTCCACCGGCAGGATGCGCTGTGGAT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CAA 72 bp GACTCACGCTCCTCCCGCGAAGAGTCCCGTGTAGGCTaGGCACGGCCTCGAGTGTCGCTCTCCCACACGCGG +
Preference number: 6 (lower is better)
Translates to: DSRSSREESRVG*ARPRVSLSHTR
Trigger: CCGCGTGTGGGAGAGCGACACTCGAGGCCGTGCCAAGCCTACACGGGACTCTTCGCGGGAGGAGCGTGAGTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 90 bp GTCACGGTCTTGAAAGGCTTGGGAGCAGGTGGAGGAGGCGCCACCTaGAGCCTTCGGCTACCGGTGCCAGGATGCGGGGAGGACGAGCCC +
Preference number: 6 (lower is better)
Translates to: VTVLKGLGAGGGGAT*SLRLPVPGCGEDEP
Trigger: GGGCTCGTCCTCCCCGCATCCTGGCACCGGTAGCCGAAGGCTCAAGGTGGCGCCTCCTCCACCTGCTCCCAAGCCTTTCAAGACCGTGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CAA 90 bp TCGGGCCATGACAGGCGGCTGCCTGCGCCCTTGCCCCCGCCGGCTTaGGCTCCACTAGTGGTCACGGTCTTGAAAGGCTTGGGAGCAGGT +
Preference number: 6 (lower is better)
Translates to: SGHDRRLPAPLPPPA*APLVVTVLKGLGAG
Trigger: ACCTGCTCCCAAGCCTTTCAAGACCGTGACCACTAGTGGAGCCAAAGCCGGCGGGGGCAAGGGCGCAGGCAGCCGCCTGTCATGGCCCGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CAA 90 bp GAAGCTCCAGTCCCGGCGGTGCTCTTTGACCCCTTGACCCTGGGTTaGCCCTCGCTTTCGGGCCATGACAGGCGGCTGCCTGCGCCCTTG +
Preference number: 6 (lower is better)
Translates to: EAPVPAVLFDPLTLG*PSLSGHDRRLPAPL
Trigger: CAAGGGCGCAGGCAGCCGCCTGTCATGGCCCGAAAGCGAGGGCAAACCCAGGGTCAAGGGGTCAAAGAGCACCGCCGGGACTGGAGCTTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS TCA 72 bp CGCAGCGGCAGAAGCTCCAGTCCCGGCGGTGCTCTTTaGCCCCTTGACCCTGGGTTTGCCCTCGCTTTCGGG +
Preference number: 6 (lower is better)
Translates to: RSGRSSSPGGAL*PLDPGFALAFG
Trigger: CCCGAAAGCGAGGGCAAACCCAGGGTCAAGGGGTCAAAGAGCACCGCCGGGACTGGAGCTTCTGCCGCTGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS GCA 72 bp TGCGTAGTTCTGCTCCCAGCAGCTCCCTGGACCCGCTaGTGGAAGACAAGCCTTGGGGTCCGGGAAGGGGCC +
Preference number: 6 (lower is better)
Translates to: CVVLLPAAPWTR*WKTSLGVREGA
Trigger: GGCCCCTTCCCGGACCCCAAGGCTTGTCTTCCAGCAGCGGGTCCAGGGAGCTGCTGGGAGCAGAACTACGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS GCA 72 bp GCCCTCTCCCGGGCAGCCGTGCTGGAGAAGGATGTCTaGACACAGCTGGCTGCCAGCCTGGCGGGCATAGAA +
Preference number: 6 (lower is better)
Translates to: ALSRAAVLEKDV*TQLAASLAGIE
Trigger: TTCTATGCCCGCCAGGCTGGCAGCCAGCTGTGTGCAGACATCCTTCTCCAGCACGGCTGCCCGGGAGAGGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 90 bp CCCCCGCCGGCTTTGGCTCCACTAGTGGTCACGGTCTTGAAAGGCTaGGGAGCAGGTGGAGGAGGCGCCACCTTGAGCCTTCGGCTACCG +
Preference number: 6 (lower is better)
Translates to: PPPALAPLVVTVLKG*GAGGGGATLSLRLP
Trigger: CGGTAGCCGAAGGCTCAAGGTGGCGCCTCCTCCACCTGCTCCCAAGCCTTTCAAGACCGTGACCACTAGTGGAGCCAAAGCCGGCGGGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CAA 90 bp GGTTTGCCCTCGCTTTCGGGCCATGACAGGCGGCTGCCTGCGCCCTaGCCCCCGCCGGCTTTGGCTCCACTAGTGGTCACGGTCTTGAAA +
Preference number: 6 (lower is better)
Translates to: GLPSLSGHDRRLPAP*PPPALAPLVVTVLK
Trigger: TTTCAAGACCGTGACCACTAGTGGAGCCAAAGCCGGCGGGGGCAAGGGCGCAGGCAGCCGCCTGTCATGGCCCGAAAGCGAGGGCAAACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CAA 90 bp CGAATCCACGACTCACGCTCCTCCCGCGAAGAGTCCCGTGTAGGCTaGGCACGGCCTCGAGTGTCGCTCTCCCACACGCGGTTGGCTGTG +
Preference number: 6 (lower is better)
Translates to: RIHDSRSSREESRVG*ARPRVSLSHTRLAV
Trigger: CACAGCCAACCGCGTGTGGGAGAGCGACACTCGAGGCCGTGCCAAGCCTACACGGGACTCTTCGCGGGAGGAGCGTGAGTCGTGGATTCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS GCA 72 bp GTGCCTGCGCTGCTGGTACTGATCCACAGCGCATCCTaGCGGTGGAAGAGACGCTCGTGCCGCTTCTTGCCG +
Preference number: 6 (lower is better)
Translates to: VPALLVLIHSAS*RWKRRSCRFLP
Trigger: CGGCAAGAAGCGGCACGAGCGTCTCTTCCACCGGCAGGATGCGCTGTGGATCAGTACCAGCAGCGCAGGCAC
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CCA 72 bp GCGCTGCTGGTACTGATCCACAGCGCATCCTGCCGGTaGAAGAGACGCTCGTGCCGCTTCTTGCCGGGTTCC +
Preference number: 6 (lower is better)
Translates to: ALLVLIHSASCR*KRRSCRFLPGS
Trigger: GGAACCCGGCAAGAAGCGGCACGAGCGTCTCTTCCACCGGCAGGATGCGCTGTGGATCAGTACCAGCAGCGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CCA 72 bp GCGCCATACCACAACAGCAGCTGTGTAATGACAACGTaGGCGAGCTCGGCCGCCAAGTGCAGCGGCGAGCGG +
Preference number: 6 (lower is better)
Translates to: APYHNSSCVMTT*ASSAAKCSGER
Trigger: CCGCTCGCCGCTGCACTTGGCGGCCGAGCTCGCCCACGTTGTCATTACACAGCTGCTGTTGTGGTATGGCGC
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS GCA 72 bp TGCCGTGCGGCCTTGCGCATCGCGGGCCGCCACGTCTaGGCCATACCACAACAGCAGCTGTGTAATGACAAC +
Preference number: 6 (lower is better)
Translates to: CRAALRIAGRHV*AIPQQQLCNDN
Trigger: GTTGTCATTACACAGCTGCTGTTGTGGTATGGCGCAGACGTGGCGGCCCGCGATGCGCAAGGCCGCACGGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 72 bp GAGGGGCTGCGTGGAGGTGGCAGTGACAGAAGTGGCTaGAACTGGGATTGCTGGCACGGTGAGCGGAGGAGA +
Preference number: 6 (lower is better)
Translates to: EGLRGGGSDRSG*NWDCWHGERRR
Trigger: TCTCCTCCGCTCACCGTGCCAGCAATCCCAGTTCCAGCCACTTCTGTCACTGCCACCTCCACGCAGCCCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CCA 72 bp TGCCCAGAGGCGCCAGGAACAGCAGCTGCTCATACTTaGCGCGAATCCACGACTCACGCTCCTCCCGCGAAG +
Preference number: 6 (lower is better)
Translates to: CPEAPGTAAAHT*RESTTHAPPAK
Trigger: CTTCGCGGGAGGAGCGTGAGTCGTGGATTCGCGCCAAGTATGAGCAGCTGCTGTTCCTGGCGCCTCTGGGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 72 bp GTGCCCAGAGGCGCCAGGAACAGCAGCTGCTCATACTaGGCGCGAATCCACGACTCACGCTCCTCCCGCGAA +
Preference number: 6 (lower is better)
Translates to: VPRGARNSSCSY*ARIHDSRSSRE
Trigger: TTCGCGGGAGGAGCGTGAGTCGTGGATTCGCGCCAAGTATGAGCAGCTGCTGTTCCTGGCGCCTCTGGGCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS TCA 72 bp CAGAAGCTCCAGTCCCGGCGGTGCTCTTTGACCCCTTaGCCCTGGGTTTGCCCTCGCTTTCGGGCCATGACA +
Preference number: 6 (lower is better)
Translates to: QKLQSRRCSLTP*PWVCPRFRAMT
Trigger: TGTCATGGCCCGAAAGCGAGGGCAAACCCAGGGTCAAGGGGTCAAAGAGCACCGCCGGGACTGGAGCTTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CCA 72 bp TCTCAGCATCGCTGCCCCGACGGTTCGCAAAAAGGCTaGTCCGCCGCTTGGCTGCTCTGTGTAAGGACCCTG +
Preference number: 6 (lower is better)
Translates to: SQHRCPDGSQKG*SAAWLLCVRTL
Trigger: CAGGGTCCTTACACAGAGCAGCCAAGCGGCGGACCAGCCTTTTTGCGAACCGTCGGGGCAGCGATGCTGAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 90 bp GGGCCTTCACCCATCTGGACGGTGCTCATATCCTTGACCAACCCGTaGATGCTGGCTGAGGGGCCGAAAGCAGAGATAGCCCTTGGGGGC +
Preference number: 6 (lower is better)
Translates to: GPSPIWTVLISLTNP*MLAEGPKAEIALGG
Trigger: GCCCCCAAGGGCTATCTCTGCTTTCGGCCCCTCAGCCAGCATCAACGGGTTGGTCAAGGATATGAGCACCGTCCAGATGGGTGAAGGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS TCA 72 bp CAGGCTGAAGACGAAGATCACAGCATCTGCCCAGCCTaGGAACTTGGCATCGGGTGCCCCTGCTTCCTCCCG +
Preference number: 6 (lower is better)
Translates to: QAEDEDHSICPA*ELGIGCPCFLP
Trigger: CGGGAGGAAGCAGGGGCACCCGATGCCAAGTTCTCAGGCTGGGCAGATGCTGTGATCTTCGTCTTCAGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS GCA 72 bp CCACAGCCTCTCGTACGCTGTCCAGTGAGGCCTGGATaGCAGCTTGGAGTTCGGGGTCACTCACTCTCTCTG +
Preference number: 6 (lower is better)
Translates to: PQPLVRCPVRPG*QLGVRGHSLSL
Trigger: CAGAGAGAGTGAGTGACCCCGAACTCCAAGCTGGCATCCAGGCCTCACTGGACAGCGTACGAGAGGCTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239120.2
CDS CCA 72 bp ACTAGTGGTCACGGTCTTGAAAGGCTTGGGAGCAGGTaGAGGAGGCGCCACCTTGAGCCTTCGGCTACCGGT +
Preference number: 6 (lower is better)
Translates to: TSGHGLERLGSR*RRRHLEPSATG
Trigger: ACCGGTAGCCGAAGGCTCAAGGTGGCGCCTCCTCCACCTGCTCCCAAGCCTTTCAAGACCGTGACCACTAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CCA 72 bp GCGTTGCGGATCGCCTGGATGGCCACAGCTTCGCTTTaGCTGTCAGTGCGCAGCTTGACCTTGCTGCTCTCA +
Preference number: 6 (lower is better)
Translates to: ALRIAWMATASL*LSVRSLTLLLS
Trigger: TGAGAGCAGCAAGGTCAAGCTGCGCACTGACAGCCAAAGCGAAGCTGTGGCCATCCAGGCGATCCGCAACGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 72 bp TGCGTTGCGGATCGCCTGGATGGCCACAGCTTCGCTTaGGCTGTCAGTGCGCAGCTTGACCTTGCTGCTCTC +
Preference number: 6 (lower is better)
Translates to: CVADRLDGHSFA*AVSAQLDLAAL
Trigger: GAGAGCAGCAAGGTCAAGCTGCGCACTGACAGCCAAAGCGAAGCTGTGGCCATCCAGGCGATCCGCAACGCA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 72 bp TGGGAGCTCCACAGTCCACACAGGTCGAGTTTCCCTTaGCGTTGCGGATCGCCTGGATGGCCACAGCTTCGC +
Preference number: 6 (lower is better)
Translates to: WELHSPHRSSFP*RCGSPGWPQLR
Trigger: GCGAAGCTGTGGCCATCCAGGCGATCCGCAACGCAAAGGGAAACTCGACCTGTGTGGACTGTGGAGCTCCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 90 bp CCTCCTGTGCTCTTGGTGAAGATACCGCTGATAAACTTGAGCATCTaGCGGTCACGAGTGGACGCTCGGCCGCCCTCCCGGCCCCTTTTC +
Preference number: 6 (lower is better)
Translates to: PPVLLVKIPLINLSI*RSRVDARPPSRPLF
Trigger: GAAAAGGGGCCGGGAGGGCGGCCGAGCGTCCACTCGTGACCGCAAGATGCTCAAGTTTATCAGCGGTATCTTCACCAAGAGCACAGGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CAA 90 bp TGGGGTCCGGGAAGGGGCCCTGGACCAGGAGGCCCTCCTGTGCTCTaGGTGAAGATACCGCTGATAAACTTGAGCATCTTGCGGTCACGA +
Preference number: 6 (lower is better)
Translates to: WGPGRGPGPGGPPVL*VKIPLINLSILRSR
Trigger: TCGTGACCGCAAGATGCTCAAGTTTATCAGCGGTATCTTCACCAAGAGCACAGGAGGGCCTCCTGGTCCAGGGCCCCTTCCCGGACCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS TCA 72 bp AGCCCTGGCTCGAGCATCACCCACCACTCGAGGAGATaGTGCACTGATCCTGTCTTGGGTCCCAACCAGAGC +
Preference number: 6 (lower is better)
Translates to: SPGSSITHHSRR*CTDPVLGPNQS
Trigger: GCTCTGGTTGGGACCCAAGACAGGATCAGTGCATCATCTCCTCGAGTGGTGGGTGATGCTCGAGCCAGGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 72 bp AGACGAAGATCACAGCATCTGCCCAGCCTGAGAACTTaGCATCGGGTGCCCCTGCTTCCTCCCGGATCAGCA +
Preference number: 6 (lower is better)
Translates to: RRRSQHLPSLRT*HRVPLLPPGSA
Trigger: TGCTGATCCGGGAGGAAGCAGGGGCACCCGATGCCAAGTTCTCAGGCTGGGCAGATGCTGTGATCTTCGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 72 bp TGGGGGTTCCCGACTCAGGGGACTCAGATCTCCAGATaGGGTACAGTCGGTGCTAAGGGCACGGGCCAAATT +
Preference number: 6 (lower is better)
Translates to: WGFPTQGTQISR*GTVGAKGTGQI
Trigger: AATTTGGCCCGTGCCCTTAGCACCGACTGTACCCCATCTGGAGATCTGAGTCCCCTGAGTCGGGAACCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 72 bp AGGTCGAGTTTCCCTTTGCGTTGCGGATCGCCTGGATaGCCACAGCTTCGCTTTGGCTGTCAGTGCGCAGCT +
Preference number: 6 (lower is better)
Translates to: RSSFPLRCGSPG*PQLRFGCQCAA
Trigger: AGCTGCGCACTGACAGCCAAAGCGAAGCTGTGGCCATCCAGGCGATCCGCAACGCAAAGGGAAACTCGACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 72 bp ACACAGGTCGAGTTTCCCTTTGCGTTGCGGATCGCCTaGATGGCCACAGCTTCGCTTTGGCTGTCAGTGCGC +
Preference number: 6 (lower is better)
Translates to: TQVEFPFALRIA*MATASLWLSVR
Trigger: GCGCACTGACAGCCAAAGCGAAGCTGTGGCCATCCAGGCGATCCGCAACGCAAAGGGAAACTCGACCTGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 72 bp TCTCGTACGCTGTCCAGTGAGGCCTGGATGCCAGCTTaGAGTTCGGGGTCACTCACTCTCTCTGCCAGCTTC +
Preference number: 6 (lower is better)
Translates to: SRTLSSEAWMPA*SSGSLTLSASF
Trigger: GAAGCTGGCAGAGAGAGTGAGTGACCCCGAACTCCAAGCTGGCATCCAGGCCTCACTGGACAGCGTACGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239120.2
CDS CAA 72 bp CTCTTGGTGAAGATACCGCTGATAAACTTGAGCATCTaGCGGTCACGAGTGGACGCTCGGCCGCCCTCCCGG +
Preference number: 6 (lower is better)
Translates to: LLVKIPLINLSI*RSRVDARPPSR
Trigger: CCGGGAGGGCGGCCGAGCGTCCACTCGTGACCGCAAGATGCTCAAGTTTATCAGCGGTATCTTCACCAAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CAA 72 bp AAGACGAAGATCACAGCATCTGCCCAGCCTGAGAACTaGGCATCGGGTGCCCCTGCTTCCTCCCGGATCAGC +
Preference number: 6 (lower is better)
Translates to: KTKITASAQPEN*ASGAPASSRIS
Trigger: GCTGATCCGGGAGGAAGCAGGGGCACCCGATGCCAAGTTCTCAGGCTGGGCAGATGCTGTGATCTTCGTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 72 bp GAGGGGCCGAAAGCAGAGATAGCCCTTGGGGGCCGCTaGCCTGGGACTTTGACCGTTGTTCGTAACAAGTCC +
Preference number: 6 (lower is better)
Translates to: EGPKAEIALGGR*PGTLTVVRNKS
Trigger: GGACTTGTTACGAACAACGGTCAAAGTCCCAGGCAAGCGGCCCCCAAGGGCTATCTCTGCTTTCGGCCCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 72 bp GCTCCACAGTCCACACAGGTCGAGTTTCCCTTTGCGTaGCGGATCGCCTGGATGGCCACAGCTTCGCTTTGG +
Preference number: 6 (lower is better)
Translates to: APQSTQVEFPFA*RIAWMATASLW
Trigger: CCAAAGCGAAGCTGTGGCCATCCAGGCGATCCGCAACGCAAAGGGAAACTCGACCTGTGTGGACTGTGGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 90 bp GTGCTAAGGGCACGGGCCAAATTCCGGTCTGGCTTCAAGAGGTGCTaGGATGTCTGGTCTGTTGGAAGCTGCAGGGAACTGGGGCTAGGG +
Preference number: 6 (lower is better)
Translates to: VLRARAKFRSGFKRC*DVWSVGSCRELGLG
Trigger: CCCTAGCCCCAGTTCCCTGCAGCTTCCAACAGACCAGACATCCAAGCACCTCTTGAAGCCAGACCGGAATTTGGCCCGTGCCCTTAGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS TCA 72 bp CTGGCTATTAACCACAGCCTCTCGTACGCTGTCCAGTaGGGCCTGGATGCCAGCTTGGAGTTCGGGGTCACT +
Preference number: 6 (lower is better)
Translates to: LAINHSLSYAVQ*GLDASLEFGVT
Trigger: AGTGACCCCGAACTCCAAGCTGGCATCCAGGCCTCACTGGACAGCGTACGAGAGGCTGTGGTTAATAGCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239120.2
CDS GCA 72 bp TTCAAGAGGTGCTTGGATGTCTGGTCTGTTGGAAGCTaGAGGGAACTGGGGCTAGGGCTGGGGCTTGGCATG +
Preference number: 6 (lower is better)
Translates to: FKRCLDVWSVGS*RELGLGLGLGM
Trigger: CATGCCAAGCCCCAGCCCTAGCCCCAGTTCCCTGCAGCTTCCAACAGACCAGACATCCAAGCACCTCTTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 72 bp CTAGCCTGCCCAGCTACAGGAGTAGATGCAGCTGAATaGCTTGGCGAGCTAGGCAGGGATTTGCAAGCAGCC +
Preference number: 6 (lower is better)
Translates to: LACPATGVDAAE*LGELGRDLQAA
Trigger: GGCTGCTTGCAAATCCCTGCCTAGCTCGCCAAGCCATTCAGCTGCATCTACTCCTGTAGCTGGGCAGGCTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 72 bp TTAACCACAGCCTCTCGTACGCTGTCCAGTGAGGCCTaGATGCCAGCTTGGAGTTCGGGGTCACTCACTCTC +
Preference number: 6 (lower is better)
Translates to: LTTASRTLSSEA*MPAWSSGSLTL
Trigger: GAGAGTGAGTGACCCCGAACTCCAAGCTGGCATCCAGGCCTCACTGGACAGCGTACGAGAGGCTGTGGTTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239120.2
CDS CAA 72 bp GGCAGGGATTTGCAAGCAGCCAGGAGTTGTTGTTGTTaGCGCAAGGTCACCACCTTCTGGGCCACCTCCTGG +
Preference number: 6 (lower is better)
Translates to: GRDLQAARSCCC*RKVTTFWATSW
Trigger: CCAGGAGGTGGCCCAGAAGGTGGTGACCTTGCGCAAACAACAACAACTCCTGGCTGCTTGCAAATCCCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 72 bp CCCATCTGGACGGTGCTCATATCCTTGACCAACCCGTaGATGCTGGCTGAGGGGCCGAAAGCAGAGATAGCC +
Preference number: 6 (lower is better)
Translates to: PIWTVLISLTNP*MLAEGPKAEIA
Trigger: GGCTATCTCTGCTTTCGGCCCCTCAGCCAGCATCAACGGGTTGGTCAAGGATATGAGCACCGTCCAGATGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 90 bp GCACTGGGTCCTGGGTGTAAGTCACTATTGTCCAAGGTCTTACTCTaGCCTTTCCGAGGGGACAACTTCCCTCTGGTTCCAGCCCCAGCC +
Preference number: 6 (lower is better)
Translates to: ALGPGCKSLLSKVLL*PFRGDNFPLVPAPA
Trigger: GGCTGGGGCTGGAACCAGAGGGAAGTTGTCCCCTCGGAAAGGCAAGAGTAAGACCTTGGACAATAGTGACTTACACCCAGGACCCAGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CAA 90 bp GTGAGCGGAGGAGAGCCGGCACTGGGTCCTGGGTGTAAGTCACTATaGTCCAAGGTCTTACTCTTGCCTTTCCGAGGGGACAACTTCCCT +
Preference number: 6 (lower is better)
Translates to: VSGGEPALGPGCKSL*SKVLLLPFRGDNFP
Trigger: AGGGAAGTTGTCCCCTCGGAAAGGCAAGAGTAAGACCTTGGACAATAGTGACTTACACCCAGGACCCAGTGCCGGCTCTCCTCCGCTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CAA 90 bp ATGCTGGCTGAGGGGCCGAAAGCAGAGATAGCCCTTGGGGGCCGCTaGCCTGGGACTTTGACCGTTGTTCGTAACAAGTCCATCTCTTTG +
Preference number: 6 (lower is better)
Translates to: MLAEGPKAEIALGGR*PGTLTVVRNKSISL
Trigger: CAAAGAGATGGACTTGTTACGAACAACGGTCAAAGTCCCAGGCAAGCGGCCCCCAAGGGCTATCTCTGCTTTCGGCCCCTCAGCCAGCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 90 bp GTAGAGGCTTCAGGGCCTTCACCCATCTGGACGGTGCTCATATCCTaGACCAACCCGTTGATGCTGGCTGAGGGGCCGAAAGCAGAGATA +
Preference number: 6 (lower is better)
Translates to: VEASGPSPIWTVLIS*TNPLMLAEGPKAEI
Trigger: TATCTCTGCTTTCGGCCCCTCAGCCAGCATCAACGGGTTGGTCAAGGATATGAGCACCGTCCAGATGGGTGAAGGCCCTGAAGCCTCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS GCA 72 bp AGGGCACGGGCCAAATTCCGGTCTGGCTTCAAGAGGTaGTTGGATGTCTGGTCTGTTGGAAGCTGCAGGGAA +
Preference number: 6 (lower is better)
Translates to: RARAKFRSGFKR*LDVWSVGSCRE
Trigger: TTCCCTGCAGCTTCCAACAGACCAGACATCCAAGCACCTCTTGAAGCCAGACCGGAATTTGGCCCGTGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS GCA 72 bp CAGAGCTTGCTTGGCCACCTCATGTCGCCTGACTTCTaGTCTTACTGTGGCTATAGCCAACTGCCTCTGGGC +
Preference number: 6 (lower is better)
Translates to: QSLLGHLMSPDF*SYCGYSQLPLG
Trigger: GCCCAGAGGCAGTTGGCTATAGCCACAGTAAGAGCAGAAGTCAGGCGACATGAGGTGGCCAAGCAAGCTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239120.2
CDS CCA 72 bp ACAGTCGGTGCTAAGGGCACGGGCCAAATTCCGGTCTaGCTTCAAGAGGTGCTTGGATGTCTGGTCTGTTGG +
Preference number: 6 (lower is better)
Translates to: TVGAKGTGQIPV*LQEVLGCLVCW
Trigger: CCAACAGACCAGACATCCAAGCACCTCTTGAAGCCAGACCGGAATTTGGCCCGTGCCCTTAGCACCGACTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 72 bp TTTCTTCCTCCTCTGCTTCTTCACCATGGGCGAAGGTaGGGGTTCCCGACTCAGGGGACTCAGATCTCCAGA +
Preference number: 6 (lower is better)
Translates to: FLPPLLLHHGRR*GFPTQGTQISR
Trigger: TCTGGAGATCTGAGTCCCCTGAGTCGGGAACCCCCACCTTCGCCCATGGTGAAGAAGCAGAGGAGGAAGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 72 bp GGAGAGCCGGCACTGGGTCCTGGGTGTAAGTCACTATaGTCCAAGGTCTTACTCTTGCCTTTCCGAGGGGAC +
Preference number: 6 (lower is better)
Translates to: GEPALGPGCKSL*SKVLLLPFRGD
Trigger: GTCCCCTCGGAAAGGCAAGAGTAAGACCTTGGACAATAGTGACTTACACCCAGGACCCAGTGCCGGCTCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CAA 72 bp GGAAGGGGCCCTGGACCAGGAGGCCCTCCTGTGCTCTaGGTGAAGATACCGCTGATAAACTTGAGCATCTTG +
Preference number: 6 (lower is better)
Translates to: GRGPGPGGPPVL*VKIPLINLSIL
Trigger: CAAGATGCTCAAGTTTATCAGCGGTATCTTCACCAAGAGCACAGGAGGGCCTCCTGGTCCAGGGCCCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CAA 72 bp GCACGGGCCAAATTCCGGTCTGGCTTCAAGAGGTGCTaGGATGTCTGGTCTGTTGGAAGCTGCAGGGAACTG +
Preference number: 6 (lower is better)
Translates to: ARAKFRSGFKRC*DVWSVGSCREL
Trigger: CAGTTCCCTGCAGCTTCCAACAGACCAGACATCCAAGCACCTCTTGAAGCCAGACCGGAATTTGGCCCGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 90 bp GGGCCGAAAGCAGAGATAGCCCTTGGGGGCCGCTTGCCTGGGACTTaGACCGTTGTTCGTAACAAGTCCATCTCTTTGCCATGTGTACTG +
Preference number: 6 (lower is better)
Translates to: GPKAEIALGGRLPGT*TVVRNKSISLPCVL
Trigger: CAGTACACATGGCAAAGAGATGGACTTGTTACGAACAACGGTCAAAGTCCCAGGCAAGCGGCCCCCAAGGGCTATCTCTGCTTTCGGCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS TCA 72 bp GTTACTAGCCTGCCCAGCTACAGGAGTAGATGCAGCTaGATGGCTTGGCGAGCTAGGCAGGGATTTGCAAGC +
Preference number: 6 (lower is better)
Translates to: VTSLPSYRSRCS*MAWRARQGFAS
Trigger: GCTTGCAAATCCCTGCCTAGCTCGCCAAGCCATTCAGCTGCATCTACTCCTGTAGCTGGGCAGGCTAGTAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 72 bp AAATTCCGGTCTGGCTTCAAGAGGTGCTTGGATGTCTaGTCTGTTGGAAGCTGCAGGGAACTGGGGCTAGGG +
Preference number: 6 (lower is better)
Translates to: KFRSGFKRCLDV*SVGSCRELGLG
Trigger: CCCTAGCCCCAGTTCCCTGCAGCTTCCAACAGACCAGACATCCAAGCACCTCTTGAAGCCAGACCGGAATTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 72 bp GCAGAGATAGCCCTTGGGGGCCGCTTGCCTGGGACTTaGACCGTTGTTCGTAACAAGTCCATCTCTTTGCCA +
Preference number: 6 (lower is better)
Translates to: AEIALGGRLPGT*TVVRNKSISLP
Trigger: TGGCAAAGAGATGGACTTGTTACGAACAACGGTCAAAGTCCCAGGCAAGCGGCCCCCAAGGGCTATCTCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 90 bp ACAGGAGTAGATGCAGCTGAATGGCTTGGCGAGCTAGGCAGGGATTaGCAAGCAGCCAGGAGTTGTTGTTGTTTGCGCAAGGTCACCACC +
Preference number: 6 (lower is better)
Translates to: TGVDAAEWLGELGRD*QAARSCCCLRKVTT
Trigger: GGTGGTGACCTTGCGCAAACAACAACAACTCCTGGCTGCTTGCAAATCCCTGCCTAGCTCGCCAAGCCATTCAGCTGCATCTACTCCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS TCA 72 bp GACATCACCCAGCACACCCAGGCGCAGTTCGGGAATTaGTCGGCTCAAAGTCCATTCCTGGCTATTAACCAC +
Preference number: 6 (lower is better)
Translates to: DITQHTQAQFGN*SAQSPFLAINH
Trigger: GTGGTTAATAGCCAGGAATGGACTTTGAGCCGATCAATTCCCGAACTGCGCCTGGGTGTGCTGGGTGATGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 72 bp TTCTCCAGCACCTGGTATGAACCCGTGAGGAATCTATaGATGAGGGACGACTTCCCACTCCTGACATCACCC +
Preference number: 6 (lower is better)
Translates to: FSSTWYEPVRNL*MRDDFPLLTSP
Trigger: GGGTGATGTCAGGAGTGGGAAGTCGTCCCTCATCCATAGATTCCTCACGGGTTCATACCAGGTGCTGGAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 72 bp GATGCAGCTGAATGGCTTGGCGAGCTAGGCAGGGATTaGCAAGCAGCCAGGAGTTGTTGTTGTTTGCGCAAG +
Preference number: 6 (lower is better)
Translates to: DAAEWLGELGRD*QAARSCCCLRK
Trigger: CTTGCGCAAACAACAACAACTCCTGGCTGCTTGCAAATCCCTGCCTAGCTCGCCAAGCCATTCAGCTGCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 72 bp CGCAGTTCGGGAATTGATCGGCTCAAAGTCCATTCCTaGCTATTAACCACAGCCTTAGGGGAGGTGCGTAGT +
Preference number: 6 (lower is better)
Translates to: RSSGIDRLKVHS*LLTTALGEVRS
Trigger: ACTACGCACCTCCCCTAAGGCTGTGGTTAATAGCCAGGAATGGACTTTGAGCCGATCAATTCCCGAACTGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CCA 72 bp CGCAGTTCGGGAATTGATCGGCTCAAAGTCCATTCCTaGCTATTAACCACAGCCTCTCGTACGCTGTCCAGT +
Preference number: 6 (lower is better)
Translates to: RSSGIDRLKVHS*LLTTASRTLSS
Trigger: ACTGGACAGCGTACGAGAGGCTGTGGTTAATAGCCAGGAATGGACTTTGAGCCGATCAATTCCCGAACTGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239120.2
CDS GCA 72 bp CTGGGTGTAAGTCACTATTGTCCAAGGTCTTACTCTTaGCTTTCCGAGGGGACAACTTCCCTCTGGTTCCAG +
Preference number: 6 (lower is better)
Translates to: LGVSHYCPRSYS*LSEGTTSLWFQ
Trigger: CTGGAACCAGAGGGAAGTTGTCCCCTCGGAAAGGCAAGAGTAAGACCTTGGACAATAGTGACTTACACCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS CAA 72 bp CCTGGGTGTAAGTCACTATTGTCCAAGGTCTTACTCTaGCCTTTCCGAGGGGACAACTTCCCTCTGGTTCCA +
Preference number: 6 (lower is better)
Translates to: PGCKSLLSKVLL*PFRGDNFPLVP
Trigger: TGGAACCAGAGGGAAGTTGTCCCCTCGGAAAGGCAAGAGTAAGACCTTGGACAATAGTGACTTACACCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
CDS TCA 72 bp GTACTGCTCACTCTCAATCTTCTCCAGCACCTGGTATaGACCCGTGAGGAATCTATGGATGAGGGACGACTT +
Preference number: 6 (lower is better)
Translates to: VLLTLNLLQHLV*TREESMDEGRL
Trigger: AAGTCGTCCCTCATCCATAGATTCCTCACGGGTTCATACCAGGTGCTGGAGAAGATTGAGAGTGAGCAGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CCA 72 bp TTCTTGTACTGCTCACTCTCAATCTTCTCCAGCACCTaGTATGAACCCGTGAGGAATCTATGGATGAGGGAC +
Preference number: 6 (lower is better)
Translates to: FLYCSLSIFSST*YEPVRNLWMRD
Trigger: GTCCCTCATCCATAGATTCCTCACGGGTTCATACCAGGTGCTGGAGAAGATTGAGAGTGAGCAGTACAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039259.7
ENSMUST00000217941.2
ENSMUST00000239120.2
CDS CAA 72 bp TTTCTTAAACTACCAAAGGATTTTAGTTTCCACATTTaGCGCTTGGCTTCAGCTTGCACAGCCGAGCCTTCA +
Preference number: 6 (lower is better)
Translates to: FLKLPKDFSFHI*RLASACTAEPS
Trigger: TGAAGGCTCGGCTGTGCAAGCTGAAGCCAAGCGCAAAATGTGGAAACTAAAATCCTTTGGTAGTTTAAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039259.7
ENSMUST00000239120.2