Pregenerated sensors for AGA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031521Ensembl transcript IDs: ENSMUST00000033920.6, ENSMUST00000209811.2, ENSMUST00000211424.2
Found 100 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGGCAGAAAGCGCAGGAGTGTGTCACCATCGCCAGTGGCTGCAGCTaGTCCAGCCGTGTCATCAGCATAGGCTCCGGCTCCAGGGATTGG | + |
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Preference number: 1 (lower is better) Translates to: RQKAQECVTIASGCS*SSRVISIGSGSRDW Trigger: CCAATCCCTGGAGCCGGAGCCTATGCTGATGACACGGCTGGAGCAGCTGCAGCCACTGGCGATGGTGACACACTCCTGCGCTTTCTGCCG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR GCA 90 bp | GTAGCTCGGCAGAAAGCGCAGGAGTGTGTCACCATCGCCAGTGGCTaGAGCTGCTCCAGCCGTGTCATCAGCATAGGCTCCGGCTCCAGG | + |
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Preference number: 1 (lower is better) Translates to: VARQKAQECVTIASG*SCSSRVISIGSGSR Trigger: CCTGGAGCCGGAGCCTATGCTGATGACACGGCTGGAGCAGCTGCAGCCACTGGCGATGGTGACACACTCCTGCGCTTTCTGCCGAGCTAC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR CCA 90 bp | GGCCTCCCACTGCTCCCACATCCATGGCAGTGCCATCCATTATCATaGCATCCAGGGTGGTTTCGCCACCTTCATCAGGACTTCCTCCAA | + |
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Preference number: 1 (lower is better) Translates to: GLPLLPHPWQCHPLS*HPGWFRHLHQDFLQ Trigger: TTGGAGGAAGTCCTGATGAAGGTGGCGAAACCACCCTGGATGCCATGATAATGGATGGCACTGCCATGGATGTGGGAGCAGTGGGAGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR CCA 90 bp | CTCCCACATCCATGGCAGTGCCATCCATTATCATGGCATCCAGGGTaGTTTCGCCACCTTCATCAGGACTTCCTCCAAAGCCTACAGTCC | + |
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Preference number: 1 (lower is better) Translates to: LPHPWQCHPLSWHPG*FRHLHQDFLQSLQS Trigger: GGACTGTAGGCTTTGGAGGAAGTCCTGATGAAGGTGGCGAAACCACCCTGGATGCCATGATAATGGATGGCACTGCCATGGATGTGGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR CCA 90 bp | CAGAACAATACACCAGATCCTAAAATGCAGCAGGGGCAGGGAAGATaGAGAGGGTCTGGTGTAAAGTCAGAGATGCAGGAAGGAGAGGAG | + |
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Preference number: 1 (lower is better) Translates to: QNNTPDPKMQQGQGR*RGSGVKSEMQEGEE Trigger: CTCCTCTCCTTCCTGCATCTCTGACTTTACACCAGACCCTCTCCATCTTCCCTGCCCCTGCTGCATTTTAGGATCTGGTGTATTGTTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR CCA 90 bp | TTTATACCATTTGTGGATGTGCCAGCAGCAGTATGTCCCGTCTTATaGATTACAACCATGCCACCAATGAGCCAGAAAATGGGACTGCAA | + |
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Preference number: 1 (lower is better) Translates to: FIPFVDVPAAVCPVL*ITTMPPMSQKMGLQ Trigger: TTGCAGTCCCATTTTCTGGCTCATTGGTGGCATGGTTGTAATCCATAAGACGGGACATACTGCTGCTGGCACATCCACAAATGGTATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR TCA 90 bp | TGTTTGTGTTTTGTGGTGTTCTTTGAGTATCGAGTGGGTAGGTATTaGAAGGAAAGACGTTTTACTTATAATTCCATGGATGTTGGTTTT | + |
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Preference number: 1 (lower is better) Translates to: CLCFVVFFEYRVGRY*KERRFTYNSMDVGF Trigger: AAAACCAACATCCATGGAATTATAAGTAAAACGTCTTTCCTTTCAATACCTACCCACTCGATACTCAAAGAACACCACAAAACACAAACA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR GCA 90 bp | CATCCAGGGTGGTTTCGCCACCTTCATCAGGACTTCCTCCAAAGCCTACAGTCCACCTTAGGGACTGAGTaGAGCTTCCTGCAGAGGAGC | + |
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Preference number: 2 (lower is better) Translates to: HPGWFRHLHQDFLQSLQSTLGTE*SFLQRS Trigger: GCTCCTCTGCAGGAAGCTGCACTCAGTCCCTAAGGT...GGACTGTAGGCTTTGGAGGAAGTCCTGATGAAGGTGGCGAAACCACCCTGGATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR CCA 90 bp | GCATCCAGGGTGGTTTCGCCACCTTCATCAGGACTTCCTCCAAAGCCTACAGTCCAGGGGCAGGGAAGATaGAGAGGGTCTGGTGTAAAG | + |
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Preference number: 2 (lower is better) Translates to: ASRVVSPPSSGLPPKPTVQGQGR*RGSGVK Trigger: CTTTACACCAGACCCTCTCCATCTTCCCTGCCCCTG...GACTGTAGGCTTTGGAGGAAGTCCTGATGAAGGTGGCGAAACCACCCTGGATGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR CAA 90 bp | GCAAGCTATGGCTGGGTCATCTCCTCCTCTCATATATTCTACAGCTaGGTAGCTCGGCAGAAAGCGCAGGAGTGTGTCACCATCGCCAGT | + |
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Preference number: 2 (lower is better) Translates to: ASYGWVISSSHIFYS*VARQKAQECVTIAS Trigger: ACTGGCGATGGTGACACACTCCTGCGCTTTCTGCCGAGCTACCAAGCTGTAGAATATATGAGAGGAGGAGATGACCCAGCCATAGCTTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR TCA 90 bp | AGCAGCAGTATGTCCCGTCTTATGGATTACAACCATGCCACCAATGAGCCAGAATGCAACCTTAGGGACTaGGTGCAGCTTCCTGCAGAG | + |
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Preference number: 2 (lower is better) Translates to: SSSMSRLMDYNHATNEPECNLRD*VQLPAE Trigger: CTCTGCAGGAAGCTGCACTCAGTCCCTAAGGTTGCA...TTCTGGCTCATTGGTGGCATGGTTGTAATCCATAAGACGGGACATACTGCTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR GCA 90 bp | ATCAGGACTTCCTCCAAAGCCTACAGTCCCATCACACTGCTCCTTCTCACACACCACCAGATCCTAAAATaGAGCAGGGGCAGGGAAGAT | + |
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Preference number: 2 (lower is better) Translates to: IRTSSKAYSPITLLLLTHHQILK*SRGRED Trigger: ATCTTCCCTGCCCCTGCTGCATTTTAGGATCTGGTG...GTGTGTGAGAAGGAGCAGTGTGATGGGACTGTAGGCTTTGGAGGAAGTCCTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR CCA 90 bp | TATCATGGCATCCAGGGTGGTTTCGCCACCTTCATCAGGACTTCCTCCAAAGCCAGAGGTCAGACAAGGTaGTGCAGGAAGCAGAACAAT | + |
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Preference number: 2 (lower is better) Translates to: YHGIQGGFATFIRTSSKARGQTR*CRKQNN Trigger: ATTGTTCTGCTTCCTGCACCACCTTGTCTGACCTCT...GGCTTTGGAGGAAGTCCTGATGAAGGTGGCGAAACCACCCTGGATGCCATGATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR CAA 90 bp | GCTCCGGCTCCAGGGATTGGTGAATCCCCTACACGACCAGGTATTTaGAATTTTATACCATTTGTGGATGTGCCAGCAGCAGTATGTCCC | + |
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Preference number: 2 (lower is better) Translates to: APAPGIGESPTRPGI*NFIPFVDVPAAVCP Trigger: GGGACATACTGCTGCTGGCACATCCACAAATGGTATAAAATTCAAAATACCTGGTCGTGTAGGGGATTCACCAATCCCTGGAGCCGGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR TCA 90 bp | ATCAGGACTTCCTCCAAAGCCTACAGTCCCATCACACTGCTCCTTCTCACACACGTCTCTTTCTTGGTCTaGTTTCTCACTAACTCTGCT | + |
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Preference number: 2 (lower is better) Translates to: IRTSSKAYSPITLLLLTHVSFLV*FLTNSA Trigger: AGCAGAGTTAGTGAGAAATCAGACCAAGAAAGAGAC...GTGTGTGAGAAGGAGCAGTGTGATGGGACTGTAGGCTTTGGAGGAAGTCCTGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR TCA 90 bp | ATCAGGACTTCCTCCAAAGCCTACAGTCCCATCACACTGCTCCTTCTCACACACAAGCACAGACATGGATaGAGTAATTCATTCAAGGCC | + |
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Preference number: 2 (lower is better) Translates to: IRTSSKAYSPITLLLLTHKHRHG*SNSFKA Trigger: GGCCTTGAATGAATTACTTCATCCATGTCTGTGCTT...GTGTGTGAGAAGGAGCAGTGTGATGGGACTGTAGGCTTTGGAGGAAGTCCTGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR CCA 90 bp | TTTAATTCTTCTAAGGCCTCCCACTGCTCCCACATCCATGGCAGTGCCATCCATAAGATGGAGAGGGTCTaGTGTAAAGTCAGAGATGCA | + |
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Preference number: 2 (lower is better) Translates to: FNSSKASHCSHIHGSAIHKMERV*CKVRDA Trigger: TGCATCTCTGACTTTACACCAGACCCTCTCCATCTT...ATGGATGGCACTGCCATGGATGTGGGAGCAGTGGGAGGCCTTAGAAGAATTAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR CCA 90 bp | TATCATGGCATCCAGGGTGGTTTCGCCACCTTCATCAGGACTTCCTCCAAAGCCGGAGGAAAAACTTTGTaGCAAAAGACTGCCACAAAA | + |
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Preference number: 2 (lower is better) Translates to: YHGIQGGFATFIRTSSKAGGKTL*QKTATK Trigger: TTTTGTGGCAGTCTTTTGCCACAAAGTTTTTCCTCC...GGCTTTGGAGGAAGTCCTGATGAAGGTGGCGAAACCACCCTGGATGCCATGATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR TCA 90 bp | ATACCATTTGTGGATGTGCCAGCAGCAGTATGTCCCGTCTTATGGATTACAACCGAAAGCCAATCTGAATaGAGATCTCTTGAGGTTTTG | + |
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Preference number: 2 (lower is better) Translates to: IPFVDVPAAVCPVLWITTESQSE*RSLEVL Trigger: CAAAACCTCAAGAGATCTTCATTCAGATTGGCTTTC...GGTTGTAATCCATAAGACGGGACATACTGCTGCTGGCACATCCACAAATGGTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR CCA 90 bp | TCCACATCTAAAACAATAGTATCATGGCTGTGGATATCCACTTCTTCTTTGTGGTTTCAGCAAACTTGGTaGCTGAGTCCCCCACTAAAA | + |
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Preference number: 2 (lower is better) Translates to: STSKTIVSWLWISTSSLWFQQTW*LSPPLK Trigger: TTTTAGTGGGGGACTCAGCCACCAAGTTTGCTGAAA...CCACAAAGAAGAAGTGGATATCCACAGCCATGATACTATTGTTTTAGATGTGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR TCA 90 bp | ATTCATTCAAGGCCACACAGTATATTTCAGAAGTTGCCCAGTTTCAAAAAGGCACGAGTGGGTAGGTATTaGAAGGAAAGACGTTTTACT | + |
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Preference number: 2 (lower is better) Translates to: IHSRPHSIFQKLPSFKKARVGRY*KERRFT Trigger: AGTAAAACGTCTTTCCTTTCAATACCTACCCACTCG...TGCCTTTTTGAAACTGGGCAACTTCTGAAATATACTGTGTGGCCTTGAATGAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR CAA 90 bp | TTCTCTAAGGTGTCCACGTTTCTTGTTTGTGTTTTGTGGTGTTCTTaGAGTATCGAGTGGGTAGGTATTGAAAGGAAAGACGTTTTACTT | + |
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Preference number: 2 (lower is better) Translates to: FSKVSTFLVCVLWCS*SIEWVGIERKDVLL Trigger: AAGTAAAACGTCTTTCCTTTCAATACCTACCCACTCGATACTCAAAGAACACCACAAAACACAAACAAGAAACGTGGACACCTTAGAGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR TCA 90 bp | CTGTGGATATCCACTTCTTCTTTGTGGGGAGAAATACTCTGCTTTAAGAAACCACTTTCCAAACCTTCATaGCTTTCCTTCTTCAAATAC | + |
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Preference number: 2 (lower is better) Translates to: LWISTSSLWGEILCFKKPLSKPS*LSFFKY Trigger: GTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAAG...TGGTTTCTTAAAGCAGAGTATTTCTCCCCACAAAGAAGAAGTGGATATCCACAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR TCA 90 bp | CACACAGTATATTTCAGAAGTTGCCCAGTTTCAAAAAGGCATTTCTCTAAGGTGCAGCGTCACAAACATTaGTCAAATACATATGCATCC | + |
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Preference number: 2 (lower is better) Translates to: HTVYFRSCPVSKRHFSKVQRHKH*SNTYAS Trigger: GGATGCATATGTATTTGATCAATGTTTGTGACGCTG...CACCTTAGAGAAATGCCTTTTTGAAACTGGGCAACTTCTGAAATATACTGTGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR CCA 90 bp | CACACAGTATATTTCAGAAGTTGCCCAGTTTCAAAAAGGCATTTCTCTAAGGTGAGGAGGTCTCTTTCTTaGTCTGATTTCTCACTAACT | + |
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Preference number: 2 (lower is better) Translates to: HTVYFRSCPVSKRHFSKVRRSLS*SDFSLT Trigger: AGTTAGTGAGAAATCAGACCAAGAAAGAGACCTCCT...CACCTTAGAGAAATGCCTTTTTGAAACTGGGCAACTTCTGAAATATACTGTGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR CCA 90 bp | TCCACATCTAAAACAATAGTATCATGGCTGTGGATATCCACTTCTTCTTTGTGGCTTGTTTGTGTTTTGTaGTGTTCTTTGAGTATCGAG | + |
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Preference number: 2 (lower is better) Translates to: STSKTIVSWLWISTSSLWLVCVL*CSLSIE Trigger: CTCGATACTCAAAGAACACCACAAAACACAAACAAG...CCACAAAGAAGAAGTGGATATCCACAGCCATGATACTATTGTTTTAGATGTGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR GCA 72 bp | GCGCAGGAGTGTGTCACCATCGCCAGTGGCTGCAGCTaGTCCAGCCGTGTCATCAGCATAGGCTCCGGCTCC | + |
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Preference number: 3 (lower is better) Translates to: AQECVTIASGCS*SSRVISIGSGS Trigger: GGAGCCGGAGCCTATGCTGATGACACGGCTGGAGCAGCTGCAGCCACTGGCGATGGTGACACACTCCTGCGC 65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR GCA 72 bp | CAGAAAGCGCAGGAGTGTGTCACCATCGCCAGTGGCTaGAGCTGCTCCAGCCGTGTCATCAGCATAGGCTCC | + |
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Preference number: 3 (lower is better) Translates to: QKAQECVTIASG*SCSSRVISIGS Trigger: GGAGCCTATGCTGATGACACGGCTGGAGCAGCTGCAGCCACTGGCGATGGTGACACACTCCTGCGCTTTCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR CCA 72 bp | TCGGCAGAAAGCGCAGGAGTGTGTCACCATCGCCAGTaGCTGCAGCTGCTCCAGCCGTGTCATCAGCATAGG | + |
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Preference number: 3 (lower is better) Translates to: SAESAGVCHHRQ*LQLLQPCHQHR Trigger: CCTATGCTGATGACACGGCTGGAGCAGCTGCAGCCACTGGCGATGGTGACACACTCCTGCGCTTTCTGCCGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR CCA 72 bp | ACTTGGTGGCTGAGTCCCCCACTAAAAGCGTGTGTGTaGTATGCTCCAGGACTCTCCGCGCCACGCCAATCG | + |
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Preference number: 3 (lower is better) Translates to: TWWLSPPLKACV*YAPGLSAPRQS Trigger: CGATTGGCGTGGCGCGGAGAGTCCTGGAGCATACCACACACACGCTTTTAGTGGGGGACTCAGCCACCAAGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR CCA 72 bp | CTGCTCCCACATCCATGGCAGTGCCATCCATTATCATaGCATCCAGGGTGGTTTCGCCACCTTCATCAGGAC | + |
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Preference number: 3 (lower is better) Translates to: LLPHPWQCHPLS*HPGWFRHLHQD Trigger: GTCCTGATGAAGGTGGCGAAACCACCCTGGATGCCATGATAATGGATGGCACTGCCATGGATGTGGGAGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR CAA 90 bp | CATCCAGGGTGGTTTCGCCACCTTCATCAGGACTTCCTCCAAAGCCTACAGTCCAGTGGAGGAAAAACTTaGTGGCAAAAGACTGCCACA | + |
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Preference number: 3 (lower is better) Translates to: HPGWFRHLHQDFLQSLQSSGGKT*WQKTAT Trigger: TGTGGCAGTCTTTTGCCACAAAGTTTTTCCTCCACT...GGACTGTAGGCTTTGGAGGAAGTCCTGATGAAGGTGGCGAAACCACCCTGGATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR CAA 90 bp | TGCCATCCATTATCATGGCATCCAGGGTGGTTTCGCCACCTTCATCAGGACTTCGTTTTGTGGTGTTCTTaGAGTATCGAGTGGGTAGGT | + |
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Preference number: 3 (lower is better) Translates to: CHPLSWHPGWFRHLHQDFVLWCS*SIEWVG Trigger: ACCTACCCACTCGATACTCAAAGAACACCACAAAAC...GAAGTCCTGATGAAGGTGGCGAAACCACCCTGGATGCCATGATAATGGATGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR GCA 72 bp | GCTAAGAGGCCCAATGTTAGAGGTCAGACAAGGTGGTaGAGGAAGCAGAACAATACACCAGATCCTAAAATG | + |
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Preference number: 3 (lower is better) Translates to: AKRPNVRGQTRW*RKQNNTPDPKM Trigger: CATTTTAGGATCTGGTGTATTGTTCTGCTTCCTGCACCACCTTGTCTGACCTCTAACATTGGGCCTCTTAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR CCA 72 bp | TTTGTGGATGTGCCAGCAGCAGTATGTCCCGTCTTATaGATTACAACCATGCCACCAATGAGCCAGAAAATG | + |
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Preference number: 3 (lower is better) Translates to: FVDVPAAVCPVL*ITTMPPMSQKM Trigger: CATTTTCTGGCTCATTGGTGGCATGGTTGTAATCCATAAGACGGGACATACTGCTGCTGGCACATCCACAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR CAA 90 bp | GAATTTTATACCATTTGTGGATGTGCCAGCAGCAGTATGTCCCGTCTTATGGATAGGTGTCCACGTTTCTaGTTTGTGTTTTGTGGTGTT | + |
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Preference number: 3 (lower is better) Translates to: EFYTICGCASSSMSRLMDRCPRF*FVFCGV Trigger: AACACCACAAAACACAAACAAGAAACGTGGACACCT...ATCCATAAGACGGGACATACTGCTGCTGGCACATCCACAAATGGTATAAAATTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR CAA 90 bp | TTTTGGCAAGCTATGGCTGGGTCATCTCCTCCTCTCATATATTCTACAGCTTGGAGTATATTTCAGAAGTaGCCCAGTTTCAAAAAGGCA | + |
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Preference number: 3 (lower is better) Translates to: FWQAMAGSSPPLIYSTAWSIFQK*PSFKKA Trigger: TGCCTTTTTGAAACTGGGCAACTTCTGAAATATACT...CCAAGCTGTAGAATATATGAGAGGAGGAGATGACCCAGCCATAGCTTGCCAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR CAA 90 bp | CTGTGGATATCCACTTCTTCTTTGTGGGGAGAAATACTCTGCTTTAAGAAACCAATAATTCCATGGATGTaGGTTTTAAGAAGTCTCCCC | + |
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Preference number: 3 (lower is better) Translates to: LWISTSSLWGEILCFKKPIIPWM*VLRSLP Trigger: GGGGAGACTTCTTAAAACCAACATCCATGGAATTAT...TGGTTTCTTAAAGCAGAGTATTTCTCCCCACAAAGAAGAAGTGGATATCCACAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR CAA 90 bp | CTGTGGATATCCACTTCTTCTTTGTGGGGAGAAATACTCTGCTTTAAGAAACCAGTCCACGTTTCTTGTTaGTGTTTTGTGGTGTTCTTT | + |
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Preference number: 3 (lower is better) Translates to: LWISTSSLWGEILCFKKPVHVSC*CFVVFF Trigger: AAAGAACACCACAAAACACAAACAAGAAACGTGGAC...TGGTTTCTTAAAGCAGAGTATTTCTCCCCACAAAGAAGAAGTGGATATCCACAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR CCA 72 bp | TTTCTTTGTTTGGTTATTGTTAGGAGGTCTCTTTCTTaGTCTGATTTCTCACTAACTCTGCTTCCCACACAT | + |
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Preference number: 3 (lower is better) Translates to: FLCLVIVRRSLS*SDFSLTLLPTH Trigger: ATGTGTGGGAAGCAGAGTTAGTGAGAAATCAGACCAAGAAAGAGACCTCCTAACAATAACCAAACAAAGAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR-3UTR CAA 90 bp | ATTCATTCAAGGCCACACAGTATATTTCAGAAGTTGCCCAGTTTCAAAAAGGCAGTGGAATTTCTTTGTTaGGTTATTGTTAGGAGGTCT | + |
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Preference number: 3 (lower is better) Translates to: IHSRPHSIFQKLPSFKKAVEFLC*VIVRRS Trigger: AGACCTCCTAACAATAACCAAACAAAGAAATTCCAC...TGCCTTTTTGAAACTGGGCAACTTCTGAAATATACTGTGTGGCCTTGAATGAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR TCA 72 bp | TTTGTGGTGTTCTTTGAGTATCGAGTGGGTAGGTATTaGAAGGAAAGACGTTTTACTTATAATTCCATGGAT | + |
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Preference number: 3 (lower is better) Translates to: FVVFFEYRVGRY*KERRFTYNSMD Trigger: ATCCATGGAATTATAAGTAAAACGTCTTTCCTTTCAATACCTACCCACTCGATACTCAAAGAACACCACAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| 3UTR CAA 72 bp | GGCTGGGTCATCTCCTCCTCTCATATATTCTACAGCTaGGTAGCTCGGCAGAAAGCGCAGGAGTGTGTCACC | + |
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Preference number: 4 (lower is better) Translates to: GWVISSSHIFYS*VARQKAQECVT Trigger: GGTGACACACTCCTGCGCTTTCTGCCGAGCTACCAAGCTGTAGAATATATGAGAGGAGGAGATGACCCAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| CDS-3UTR GCA 90 bp | GCAACTTTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACCCACCCGCCCCGGGCTaGCGCTCCCCACCTGCTTCA | + |
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Preference number: 4 (lower is better) Translates to: ATFQTFMTFLLQIHTLTNPPAPG*RSPPAS Trigger: TGAAGCAGGTGGGGAGCGGCAGCCCGGGGCGGGTGG...GTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAAGTTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| CDS-3UTR GCA 90 bp | CACACAGTATATTTCAGAAGTTGCCCAGTTTCAAAAAGGCATTTCTCTAAGGTGCCCGCACCAGGGGCATaGCCAGGACCAGCAGTAGGA | + |
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Preference number: 4 (lower is better) Translates to: HTVYFRSCPVSKRHFSKVPAPGA*PGPAVG Trigger: TCCTACTGCTGGTCCTGGGCATGCCCCTGGTGCGGG...CACCTTAGAGAAATGCCTTTTTGAAACTGGGCAACTTCTGAAATATACTGTGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
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| CDS-3UTR GCA 90 bp | TTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATACCCGCACCAGGGGCATaGCCAGGACCAGCAGTAGGA | + |
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Preference number: 4 (lower is better) Translates to: FQTFMTFLLQIHTLTNRIPAPGA*PGPAVG Trigger: TCCTACTGCTGGTCCTGGGCATGCCCCTGGTGCGGG...TATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033920.6 ENSMUST00000209811.2 ENSMUST00000211424.2 |
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| CDS-3UTR CCA 90 bp | AACTTTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGTGTCACCATCGCCAGTaGCTGCAGCTGCTCCAGCCG | + |
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Preference number: 4 (lower is better) Translates to: NFPNLHDFPSSNTHVDKQCHHRQ*LQLLQP Trigger: CGGCTGGAGCAGCTGCAGCCACTGGCGATGGTGACA...CTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAAGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033920.6 |
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| CDS-3UTR CCA 90 bp | CCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATAGATGTCACCATCGCCAGTaGCTGCAGCTGCTCCAGCCG | + |
|
Preference number: 4 (lower is better) Translates to: PNLHDFPSSNTHVDKQNRCHHRQ*LQLLQP Trigger: CGGCTGGAGCAGCTGCAGCCACTGGCGATGGTGACA...TCTATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR TCA 90 bp | ACTTTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAGGCTCCAGGGATTGGTaGATCCCCTACACGACCAGG | + |
|
Preference number: 4 (lower is better) Translates to: TFQTFMTFLLQIHTLTNRGSRDW*IPYTTR Trigger: CCTGGTCGTGTAGGGGATTCACCAATCCCTGGAGCC...TCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033920.6 |
||
| CDS-3UTR GCA 90 bp | TTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATAACCATCGCCAGTGGCTaGAGCTGCTCCAGCCGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: FQTFMTFLLQIHTLTNRITIASG*SCSSRV Trigger: GACACGGCTGGAGCAGCTGCAGCCACTGGCGATGGT...TATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR GCA 90 bp | TTTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATACCATCGCCAGTGGCTaGAGCTGCTCCAGCCGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: FPNLHDFPSSNTHVDKQNTIASG*SCSSRV Trigger: GACACGGCTGGAGCAGCTGCAGCCACTGGCGATGGT...ATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| 3UTR CAA 72 bp | CCAGGGATTGGTGAATCCCCTACACGACCAGGTATTTaGAATTTTATACCATTTGTGGATGTGCCAGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: PGIGESPTRPGI*NFIPFVDVPAA Trigger: TGCTGCTGGCACATCCACAAATGGTATAAAATTCAAAATACCTGGTCGTGTAGGGGATTCACCAATCCCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
||
| CDS-3UTR GCA 90 bp | TCCACATCTAAAACAATAGTATCATGGCTGTGGATATCCACTTCTTCTTTGTGGCTGCCGCTCCCCACCTaGTTCAGTGGCATTCTTAAA | + |
|
Preference number: 4 (lower is better) Translates to: STSKTIVSWLWISTSSLWLPLPT*FSGILK Trigger: TTTAAGAATGCCACTGAAGCAGGTGGGGAGCGGCAG...CCACAAAGAAGAAGTGGATATCCACAGCCATGATACTATTGTTTTAGATGTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
||
| CDS-3UTR GCA 90 bp | TTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATACCCCATTTGTGGATGTaGCAGCAGCAGTATGTCCCG | + |
|
Preference number: 4 (lower is better) Translates to: FQTFMTFLLQIHTLTNRIPHLWM*QQQYVP Trigger: CGGGACATACTGCTGCTGGCACATCCACAAATGGGG...TATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211424.2 |
||
| CDS-3UTR TCA 90 bp | TTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATAGGCTCCAGGGATTGGTaGATCCCCATTTGTGGATGT | + |
|
Preference number: 4 (lower is better) Translates to: FQTFMTFLLQIHTLTNRIGSRDW*IPICGC Trigger: ACATCCACAAATGGGGATTCACCAATCCCTGGAGCC...TATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211424.2 |
||
| CDS-3UTR GCA 90 bp | AACTTTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGTACCATTTGTGGATGTaGCAGCAGCAGTATGTCCCG | + |
|
Preference number: 4 (lower is better) Translates to: NFPNLHDFPSSNTHVDKQYHLWM*QQQYVP Trigger: CGGGACATACTGCTGCTGGCACATCCACAAATGGTA...CTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAAGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033920.6 |
||
| CDS-3UTR CCA 90 bp | CCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATAGATGCCATCCATTATCATaGCATCCAGGGTGGTTTCGC | + |
|
Preference number: 4 (lower is better) Translates to: PNLHDFPSSNTHVDKQNRCHPLS*HPGWFR Trigger: GCGAAACCACCCTGGATGCCATGATAATGGATGGCA...TCTATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR CCA 90 bp | CCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATAGACTAAAAGCGTGTGTGTaGTATGCTCCAGGACTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: PNLHDFPSSNTHVDKQNRLKACV*YAPGLS Trigger: GGAGAGTCCTGGAGCATACCACACACACGCTTTTAG...TCTATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| 3UTR CAA 72 bp | GTGTCCACGTTTCTTGTTTGTGTTTTGTGGTGTTCTTaGAGTATCGAGTGGGTAGGTATTGAAAGGAAAGAC | + |
|
Preference number: 4 (lower is better) Translates to: VSTFLVCVLWCS*SIEWVGIERKD Trigger: GTCTTTCCTTTCAATACCTACCCACTCGATACTCAAAGAACACCACAAAACACAAACAAGAAACGTGGACAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
||
| CDS-3UTR CCA 90 bp | TTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATACTAAAAGCGTGTGTGTaGTATGCTCCAGGACTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: FQTFMTFLLQIHTLTNRILKACV*YAPGLS Trigger: GGAGAGTCCTGGAGCATACCACACACACGCTTTTAG...TATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR TCA 90 bp | TTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATATCACACTGGCACATATaGCCGCTCCAAAGAAGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: FQTFMTFLLQIHTLTNRISHWHI*PLQRSL Trigger: CAAACTTCTTTGGAGCGGTCATATGTGCCAGTGTGA...TATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR CCA 90 bp | CCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATAGATTTCAGCAAACTTGGTaGCTGAGTCCCCCACTAAAA | + |
|
Preference number: 4 (lower is better) Translates to: PNLHDFPSSNTHVDKQNRFQQTW*LSPPLK Trigger: TTTTAGTGGGGGACTCAGCCACCAAGTTTGCTGAAA...TCTATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR CCA 90 bp | TTTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATGTGAATCCCCATTTGTaGATGTGCCAGCAGCAGTAT | + |
|
Preference number: 4 (lower is better) Translates to: FPNLHDFPSSNTHVDKQNVNPHL*MCQQQY Trigger: ATACTGCTGCTGGCACATCCACAAATGGGGATTCAC...ATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211424.2 |
||
| 3UTR CAA 72 bp | CATTTCTCTAAGGTGTCCACGTTTCTTGTTTGTGTTTaGTGGTGTTCTTTGAGTATCGAGTGGGTAGGTATT | + |
|
Preference number: 4 (lower is better) Translates to: HFSKVSTFLVCV*WCSLSIEWVGI Trigger: AATACCTACCCACTCGATACTCAAAGAACACCACAAAACACAAACAAGAAACGTGGACACCTTAGAGAAATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
||
| CDS-3UTR CCA 90 bp | TTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATATTTCAGCAAACTTGGTaGCTGAGTCCCCCACTAAAA | + |
|
Preference number: 4 (lower is better) Translates to: FQTFMTFLLQIHTLTNRIFQQTW*LSPPLK Trigger: TTTTAGTGGGGGACTCAGCCACCAAGTTTGCTGAAA...TATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR TCA 90 bp | CCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATAGAGAAAGCCAATCTGAATaGAGATCTCTTGAGGTTTTG | + |
|
Preference number: 4 (lower is better) Translates to: PNLHDFPSSNTHVDKQNRESQSE*RSLEVL Trigger: CAAAACCTCAAGAGATCTTCATTCAGATTGGCTTTC...TCTATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR TCA 90 bp | GCAACTTTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACCACGACCAGGTATTTTaGATTTTATACCATTTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: ATFQTFMTFLLQIHTLTNHDQVF*ILYHLW Trigger: CCACAAATGGTATAAAATTCAAAATACCTGGTCGTG...GTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAAGTTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033920.6 |
||
| CDS-3UTR GCA 90 bp | CCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATAGATGGGGAGAAATACTCTaGTTTAAGAAACCAGATGGT | + |
|
Preference number: 4 (lower is better) Translates to: PNLHDFPSSNTHVDKQNRWGEIL*FKKPDG Trigger: ACCATCTGGTTTCTTAAAGCAGAGTATTTCTCCCCA...TCTATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR GCA 90 bp | CCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATAGAATGTTGGAAGTTTGTTaGAAGCAGCACCATAACTTC | + |
|
Preference number: 4 (lower is better) Translates to: PNLHDFPSSNTHVDKQNRMLEVC*KQHHNF Trigger: GAAGTTATGGTGCTGCTTGCAACAAACTTCCAACAT...TCTATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR CCA 90 bp | CCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATAGAATGCCAATAGTATCATaGCTGTGGATATCCACTTCT | + |
|
Preference number: 4 (lower is better) Translates to: PNLHDFPSSNTHVDKQNRMPIVS*LWISTS Trigger: AGAAGTGGATATCCACAGCCATGATACTATTGGCAT...TCTATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR CCA 90 bp | CCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATAGAGTATGTCCCGTCTTATaGATTACAACCATGCCAATA | + |
|
Preference number: 4 (lower is better) Translates to: PNLHDFPSSNTHVDKQNRVCPVL*ITTMPI Trigger: TATTGGCATGGTTGTAATCCATAAGACGGGACATAC...TCTATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR TCA 90 bp | TTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATAGAAAGCCAATCTGAATaGAGATCTCTTGAGGTTTTG | + |
|
Preference number: 4 (lower is better) Translates to: FQTFMTFLLQIHTLTNRIESQSE*RSLEVL Trigger: CAAAACCTCAAGAGATCTTCATTCAGATTGGCTTTC...TATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR GCA 90 bp | TTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATATGGGGAGAAATACTCTaGTTTAAGAAACCAGATGGT | + |
|
Preference number: 4 (lower is better) Translates to: FQTFMTFLLQIHTLTNRIWGEIL*FKKPDG Trigger: ACCATCTGGTTTCTTAAAGCAGAGTATTTCTCCCCA...TATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR GCA 90 bp | TTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATAATGTTGGAAGTTTGTTaGAAGCAGCACCATAACTTC | + |
|
Preference number: 4 (lower is better) Translates to: FQTFMTFLLQIHTLTNRIMLEVC*KQHHNF Trigger: GAAGTTATGGTGCTGCTTGCAACAAACTTCCAACAT...TATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR CCA 90 bp | TTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATATCCACTTCTTCTTTGTaGGGAGAAATACTCTGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: FQTFMTFLLQIHTLTNRISTSSL*GEILCF Trigger: AAAGCAGAGTATTTCTCCCCACAAAGAAGAAGTGGA...TATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR CCA 90 bp | TTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATAATGCCAATAGTATCATaGCTGTGGATATCCACTTCT | + |
|
Preference number: 4 (lower is better) Translates to: FQTFMTFLLQIHTLTNRIMPIVS*LWISTS Trigger: AGAAGTGGATATCCACAGCCATGATACTATTGGCAT...TATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR CCA 90 bp | TTTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATGTATGTCCCGTCTTATaGATTACAACCATGCCAATA | + |
|
Preference number: 4 (lower is better) Translates to: FPNLHDFPSSNTHVDKQNVCPVL*ITTMPI Trigger: TATTGGCATGGTTGTAATCCATAAGACGGGACATAC...ATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR CCA 90 bp | TTTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATATTTTATACCATTTGTaGATGTGCCAGCAGCAGTAT | + |
|
Preference number: 4 (lower is better) Translates to: FPNLHDFPSSNTHVDKQNILYHL*MCQQQY Trigger: ATACTGCTGCTGGCACATCCACAAATGGTATAAAAT...ATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033920.6 |
||
| CDS-3UTR CCA 90 bp | AACTTTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGCGCTCCAAAGAAGTTTaGATAGTATTTCTGAATTCT | + |
|
Preference number: 4 (lower is better) Translates to: NFPNLHDFPSSNTHVDKQRSKEV*IVFLNS Trigger: AGAATTCAGAAATACTATCCAAACTTCTTTGGAGCG...CTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAAGTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033920.6 |
||
| CDS-3UTR CCA 90 bp | AACTTTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAAATTGTGTAAATGTTaGAAGTTTGTTGCAAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: NFPNLHDFPSSNTHVDKQKLCKC*KFVASS Trigger: GCTGCTTGCAACAAACTTCCAACATTTACACAATTT...CTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAAGTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033920.6 |
||
| CDS-3UTR CCA 90 bp | TTTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATCGCTCCAAAGAAGTTTaGATAGTATTTCTGAATTCT | + |
|
Preference number: 4 (lower is better) Translates to: FPNLHDFPSSNTHVDKQNRSKEV*IVFLNS Trigger: AGAATTCAGAAATACTATCCAAACTTCTTTGGAGCG...ATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAA 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR CCA 90 bp | TTTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATAAATTGTGTAAATGTTaGAAGTTTGTTGCAAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: FPNLHDFPSSNTHVDKQNKLCKC*KFVASS Trigger: GCTGCTTGCAACAAACTTCCAACATTTACACAATTT...ATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAA 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR CAA 90 bp | ATCAGGACTTCCTCCAAAGCCTACAGTCCCATCACACTGCTCCTTCTCACACACTTAAAAGGCCAAGTGTaGACGACCAGGGGCAGAGGG | + |
|
Preference number: 5 (lower is better) Translates to: IRTSSKAYSPITLLLLTHLKGQV*TTRGRG Trigger: CCCTCTGCCCCTGGTCGTCAACACTTGGCCTTTTAA...GTGTGTGAGAAGGAGCAGTGTGATGGGACTGTAGGCTTTGGAGGAAGTCCTGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209811.2 |
||
| CDS CCA 90 bp | GAATCCCCATTTGTGGATGTGCCAGCAGCAGTATGTCCCGTCTTATaGATTACAACCATGCCAATAGTATCATGGCTGTGGATATCCACT | + |
|
Preference number: 5 (lower is better) Translates to: ESPFVDVPAAVCPVL*ITTMPIVSWLWIST Trigger: AGTGGATATCCACAGCCATGATACTATTGGCATGGTTGTAATCCATAAGACGGGACATACTGCTGCTGGCACATCCACAAATGGGGATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211424.2 |
||
| CDS-3UTR CAA 90 bp | AACTTTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGCTCCGGCTCCAGGGATaGGTGAATCCCCTACACGAC | + |
|
Preference number: 5 (lower is better) Translates to: NFPNLHDFPSSNTHVDKQLRLQG*VNPLHD Trigger: GTCGTGTAGGGGATTCACCAATCCCTGGAGCCGGAG...CTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAAGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033920.6 |
||
| CDS CCA 90 bp | GCAGTATGTCCCGTCTTATGGATTACAACCATGCCAATAGTATCATaGCTGTGGATATCCACTTCTTCTTTGTGGGGAGAAATACTCTGC | + |
|
Preference number: 5 (lower is better) Translates to: AVCPVLWITTMPIVS*LWISTSSLWGEILC Trigger: GCAGAGTATTTCTCCCCACAAAGAAGAAGTGGATATCCACAGCCATGATACTATTGGCATGGTTGTAATCCATAAGACGGGACATACTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR CAA 90 bp | AACTTTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGTTAAAAGGCCAAGTGTaGACGACCAGGGGCAGAGGG | + |
|
Preference number: 5 (lower is better) Translates to: NFPNLHDFPSSNTHVDKQLKGQV*TTRGRG Trigger: CCCTCTGCCCCTGGTCGTCAACACTTGGCCTTTTAA...CTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000209811.2 |
||
| CDS CCA 90 bp | TTTATACCATTTGTGGATGTGCCAGCAGCAGTATGTCCCGTCTTATaGATTACAACCATGCCAATAGTATCATGGCTGTGGATATCCACT | + |
|
Preference number: 5 (lower is better) Translates to: FIPFVDVPAAVCPVL*ITTMPIVSWLWIST Trigger: AGTGGATATCCACAGCCATGATACTATTGGCATGGTTGTAATCCATAAGACGGGACATACTGCTGCTGGCACATCCACAAATGGTATAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033920.6 |
||
| CDS-3UTR CAA 90 bp | TTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATATTAAAAGGCCAAGTGTaGACGACCAGGGGCAGAGGG | + |
|
Preference number: 5 (lower is better) Translates to: FQTFMTFLLQIHTLTNRILKGQV*TTRGRG Trigger: CCCTCTGCCCCTGGTCGTCAACACTTGGCCTTTTAA...TATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033920.6 ENSMUST00000209811.2 ENSMUST00000211424.2 |
||
| CDS-3UTR CAA 90 bp | CCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATAGACATATATTCTACAGCTaGGTAGCTCGGCAGAAAGCG | + |
|
Preference number: 5 (lower is better) Translates to: PNLHDFPSSNTHVDKQNRHIFYS*VARQKA Trigger: CGCTTTCTGCCGAGCTACCAAGCTGTAGAATATATG...TCTATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
||
| CDS-3UTR CAA 90 bp | TTTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATCATATATTCTACAGCTaGGTAGCTCGGCAGAAAGCG | + |
|
Preference number: 5 (lower is better) Translates to: FPNLHDFPSSNTHVDKQNHIFYS*VARQKA Trigger: CGCTTTCTGCCGAGCTACCAAGCTGTAGAATATATG...ATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
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| CDS-3UTR CAA 90 bp | GCAACTTTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACCATTTCTCCAATAATTaGGCTGGCAATTTCGAGAAA | + |
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Preference number: 5 (lower is better) Translates to: ATFQTFMTFLLQIHTLTNHFSNN*AGNFEK Trigger: TTTCTCGAAATTGCCAGCCAAATTATTGGAGAAATG...GTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAAGTTGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033920.6 |
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| CDS-3UTR CAA 90 bp | CCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATAGACCGCTCCAAAGAAGTTaGGATAGTATTTCTGAATTC | + |
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Preference number: 5 (lower is better) Translates to: PNLHDFPSSNTHVDKQNRPLQRS*DSISEF Trigger: GAATTCAGAAATACTATCCAAACTTCTTTGGAGCGG...TCTATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
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| CDS-3UTR CAA 90 bp | ACTTTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGATTTTCGGTTGGCTCATaGTGTAAAGAATTAGAAACC | + |
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Preference number: 5 (lower is better) Translates to: TFQTFMTFLLQIHTLTNRFSVGS*CKELET Trigger: GGTTTCTAATTCTTTACACAATGAGCCAACCGAAAA...TCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033920.6 |
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| CDS-3UTR CAA 90 bp | CCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATAGATTTTCGGTTGGCTCATaGTGTAAAGAATTAGAAACC | + |
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Preference number: 5 (lower is better) Translates to: PNLHDFPSSNTHVDKQNRFSVGS*CKELET Trigger: GGTTTCTAATTCTTTACACAATGAGCCAACCGAAAA...TCTATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
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| CDS-3UTR CAA 90 bp | TTTCCAAACCTTCATGACTTTCCTTCTTCAAATACACACGTTGACAAACAGAATCATTTCTCCAATAATTaGGCTGGCAATTTCGAGAAA | + |
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Preference number: 5 (lower is better) Translates to: FPNLHDFPSSNTHVDKQNHFSNN*AGNFEK Trigger: TTTCTCGAAATTGCCAGCCAAATTATTGGAGAAATG...ATTCTGTTTGTCAACGTGTGTATTTGAAGAAGGAAAGTCATGAAGGTTTGGAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
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| CDS CCA 72 bp | TTTGTGGATGTGCCAGCAGCAGTATGTCCCGTCTTATaGATTACAACCATGCCAATAGTATCATGGCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: FVDVPAAVCPVL*ITTMPIVSWLW Trigger: CCACAGCCATGATACTATTGGCATGGTTGTAATCCATAAGACGGGACATACTGCTGCTGGCACATCCACAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
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| CDS CCA 72 bp | CCCGTCTTATGGATTACAACCATGCCAATAGTATCATaGCTGTGGATATCCACTTCTTCTTTGTGGGGAGAA | + |
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Preference number: 6 (lower is better) Translates to: PVLWITTMPIVS*LWISTSSLWGE Trigger: TTCTCCCCACAAAGAAGAAGTGGATATCCACAGCCATGATACTATTGGCATGGTTGTAATCCATAAGACGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
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| CDS CCA 72 bp | TTATGGATTACAACCATGCCAATAGTATCATGGCTGTaGATATCCACTTCTTCTTTGTGGGGAGAAATACTC | + |
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Preference number: 6 (lower is better) Translates to: LWITTMPIVSWL*ISTSSLWGEIL Trigger: GAGTATTTCTCCCCACAAAGAAGAAGTGGATATCCACAGCCATGATACTATTGGCATGGTTGTAATCCATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
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| CDS CAA 72 bp | CCAATAGTATCATGGCTGTGGATATCCACTTCTTCTTaGTGGGGAGAAATACTCTGCTTTAAGAAACCAGAT | + |
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Preference number: 6 (lower is better) Translates to: PIVSWLWISTSS*WGEILCFKKPD Trigger: ATCTGGTTTCTTAAAGCAGAGTATTTCTCCCCACAAAGAAGAAGTGGATATCCACAGCCATGATACTATTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033920.6 ENSMUST00000211424.2 |
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