Pregenerated sensors for AFP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054932Ensembl transcript IDs: ENSMUST00000042755.7, ENSMUST00000200693.2
Found 106 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS-3UTR TCA 90 bp | CATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACTCCTCGTGGATGTaGGCCACATCCAGGGCCAGC | + |
Preference number: 4 (lower is better) Translates to: HLHHVVKVLAVTVKPKGSHSSWM*ATSRAS Trigger: GCTGGCCCTGGATGTGGCTCACATCCACGAGGAGTG...TGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR TCA 90 bp | GTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCTGGCTGGGGCATACATaGAGGGGTTCCTCCTTGACA | + |
Preference number: 4 (lower is better) Translates to: VVKVLAVTVKPKGSHQRVWLGHT*RGSSLT Trigger: TGTCAAGGAGGAACCCCTTCATGTATGCCCCAGCCA...GACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CCA 90 bp | CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGCAGGTTCTGGAAACTaGAAGGGTGGGACAGAGGCC | + |
Preference number: 4 (lower is better) Translates to: HVVKVLAVTVKPKGSHQRAGSGN*KGGTEA Trigger: GGCCTCTGTCCCACCCTTCCAGTTTCCAGAACCTGC...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CCA 90 bp | TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCATTCTCCTCGCTGAGCTaGCAGCACGTGGAGGCAATG | + |
Preference number: 4 (lower is better) Translates to: SHGHLHHVVKVLAVTVKPFSSLS*QHVEAM Trigger: CATTGCCTCCACGTGCTGCCAGCTCAGCGAGGAGAA...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR GCA 90 bp | TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCACCACTCCACTTTGGCTaGAGCAGCCTGAGAGTCCAT | + |
Preference number: 4 (lower is better) Translates to: SHGHLHHVVKVLAVTVKPPLHFG*SSLRVH Trigger: ATGGACTCTCAGGCTGCTGCAGCCAAAGTGGAGTGG...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR GCA 90 bp | CATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACCGGAGCAGTCTTCTTaGGTGCCAGCAGACACTGAT | + |
Preference number: 4 (lower is better) Translates to: HLHHVVKVLAVTVKPKGSPEQSS*VPADTD Trigger: ATCAGTGTCTGCTGGCACGCAAGAAGACTGCTCCGG...TGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR GCA 90 bp | GTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCAACGCTTTGCTTGGACAGTaGCTGGCTCTCCTCGATGTG | + |
Preference number: 4 (lower is better) Translates to: VKVLAVTVKPKGSHQRVNALLGQ*LALLDV Trigger: CACATCGAGGAGAGCCAGGCACTGTCCAAGCAAAGC...GTTGACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR GCA 90 bp | TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCACCTGGTCCTGGGCTTTaGAGCACTTCTCCAAAAGGC | + |
Preference number: 4 (lower is better) Translates to: SHGHLHHVVKVLAVTVKPPGPGL*STSPKG Trigger: GCCTTTTGGAGAAGTGCTGCAAAGCCCAGGACCAGG...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CCA 90 bp | CACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAATCCAGCGAGTTTCCTTaGCAACACTCCTCGTGGATG | + |
Preference number: 4 (lower is better) Translates to: HHVVKVLAVTVKPKGSHQSSEFP*QHSSWM Trigger: CATCCACGAGGAGTGTTGCCAAGGAAACTCGCTGGA...TTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CCA 90 bp | CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGACAGACTTCCTGGTCCTaGGCTTTGCAGCACTTCTCC | + |
Preference number: 4 (lower is better) Translates to: HVVKVLAVTVKPKGSHQRQTSWS*ALQHFS Trigger: GGAGAAGTGCTGCAAAGCCCAGGACCAGGAAGTCTG...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR GCA 90 bp | CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGATGGTCTGTAGGGCTTTaGCCTGAGCTTGGCACAGAT | + |
Preference number: 4 (lower is better) Translates to: HVVKVLAVTVKPKGSHQRWSVGL*PELGTD Trigger: ATCTGTGCCAAGCTCAGGGCAAAGCCCTACAGACCA...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CCA 90 bp | CATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCAGTGAAACAGACTTCCTaGTCCTGGGCTTTGCAGCAC | + |
Preference number: 4 (lower is better) Translates to: HLHHVVKVLAVTVKPKGSVKQTS*SWALQH Trigger: GTGCTGCAAAGCCCAGGACCAGGAAGTCTGTTTCAC...TGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR TCA 90 bp | CATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCAGAAGGGGTTCCTCCTTaGCACTTCATAGATGAACCT | + |
Preference number: 4 (lower is better) Translates to: HLHHVVKVLAVTVKPKGSEGVPP*HFIDEP Trigger: AGGTTCATCTATGAAGTGTCAAGGAGGAACCCCTTC...TGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR TCA 90 bp | GTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCTCTTCCAGATTGTCCTaGCATCCAGGTAGATTTCCA | + |
Preference number: 4 (lower is better) Translates to: VVKVLAVTVKPKGSHQRVSSRLS*HPGRFP Trigger: TGGAAATCTACCTGGATGTCAGGACAATCTGGAAGA...GACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR GCA 90 bp | GGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCCTCATTTTCGTGCAATaGTTTGGACGCAGCGAAATG | + |
Preference number: 4 (lower is better) Translates to: GHLHHVVKVLAVTVKPKGLIFVQ*FGRSEM Trigger: CATTTCGCTGCGTCCAAAGCATTGCACGAAAATGAG...GCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR GCA 90 bp | CACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAATTTCTTCATGTGCTTTaGAACTCTCGGCAGGTTCTG | + |
Preference number: 4 (lower is better) Translates to: HHVVKVLAVTVKPKGSHQFLHVL*NSRQVL Trigger: CAGAACCTGCCGAGAGTTGCAAAGCACATGAAGAAA...TTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR GCA 90 bp | CATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACCTGTTTTCTTCATGTaGTTTGCAACTCTCGGCAGG | + |
Preference number: 4 (lower is better) Translates to: HLHHVVKVLAVTVKPKGSPVFFM*FATLGR Trigger: CCTGCCGAGAGTTGCAAAGCACATGAAGAAAACAGG...TGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR GCA 90 bp | GTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCTTTGACGCCATTCTCTaGGTGAATTATGCAGAAGCC | + |
Preference number: 4 (lower is better) Translates to: VVKVLAVTVKPKGSHQRVFDAIL*VNYAEA Trigger: GGCTTCTGCATAATTCACGCAGAGAATGGCGTCAAA...GACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CCA 90 bp | CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGAAGAGTTGCAGCAGTaGCTGATACCAGAGTTCACA | + |
Preference number: 4 (lower is better) Translates to: HVVKVLAVTVKPKGSHQREELQQ*LIPEFT Trigger: TGTGAACTCTGGTATCAGCCACTGCTGCAACTCTTC...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CCA 90 bp | GTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCAACTTTATCCTCAGAGAATaGGGGAGGGGCATAGGTTTC | + |
Preference number: 4 (lower is better) Translates to: VKVLAVTVKPKGSHQRVNFILRE*GRGIGF Trigger: GAAACCTATGCCCCTCCCCCATTCTCTGAGGATAAA...GTTGACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CCA 90 bp | GTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCAACGAAGCTCTTGTTTCATaGTCTGTAGGGCTTTGCCCT | + |
Preference number: 4 (lower is better) Translates to: VKVLAVTVKPKGSHQRVNEALVS*SVGLCP Trigger: AGGGCAAAGCCCTACAGACCATGAAACAAGAGCTTC...GTTGACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR TCA 90 bp | CACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAGTTGGGGTGAGTTCTTaGGTATTCATGAAGAAAGCT | + |
Preference number: 4 (lower is better) Translates to: HHVVKVLAVTVKPKGSHQVGVSS*VFMKKA Trigger: AGCTTTCTTCATGAATACTCAAGAACTCACCCCAAC...TTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR GCA 90 bp | GTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCGTCAGTTCAGGCTTTTaGTTCACCAGGTTAATGAGA | + |
Preference number: 4 (lower is better) Translates to: VVKVLAVTVKPKGSHQRVVSSGF*FTRLMR Trigger: TCTCATTAACCTGGTGAAGCAAAAGCCTGAACTGAC...GACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CCA 90 bp | CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGATTTCGTGCAATGCTTTaGACGCAGCGAAATGTAGCA | + |
Preference number: 4 (lower is better) Translates to: HVVKVLAVTVKPKGSHQRFRAML*TQRNVA Trigger: TGCTACATTTCGCTGCGTCCAAAGCATTGCACGAAA...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CCA 90 bp | CACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAAACACAGATAGCTaGCTTTCTAAACACCCATCG | + |
Preference number: 4 (lower is better) Translates to: HHVVKVLAVTVKPKGSHQRNTDS*LSKHPS Trigger: CGATGGGTGTTTAGAAAGCCAGCTATCTGTGTTTCT...TTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR TCA 90 bp | CACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAGTTCTTGAGTATTCATaGAGAAAGCTTGCCATGAAC | + |
Preference number: 4 (lower is better) Translates to: HHVVKVLAVTVKPKGSHQVLEYS*RKLAMN Trigger: GTTCATGGCAAGCTTTCTTCATGAATACTCAAGAAC...TTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR GCA 90 bp | CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGGATCATGGGTAATTTaGAGCACTCTGCTATTTTGC | + |
Preference number: 4 (lower is better) Translates to: HVVKVLAVTVKPKGSHQRGSWVI*STLLFC Trigger: GCAAAATAGCAGAGTGCTGCAAATTACCCATGATCC...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CCA 90 bp | TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAATAATGGTTGTTGCCTaGAGGTTTCGGGATCCAAAT | + |
Preference number: 4 (lower is better) Translates to: SHGHLHHVVKVLAVTVKPIMVVA*RFRDPN Trigger: ATTTGGATCCCGAAACCTCCAGGCAACAACCATTAT...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CCA 90 bp | TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAATGCAGAAGCCTAGTTaGATCATGGGTAATTTGCAG | + |
Preference number: 4 (lower is better) Translates to: SHGHLHHVVKVLAVTVKPMQKPS*IMGNLQ Trigger: CTGCAAATTACCCATGATCCAACTAGGCTTCTGCAT...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CCA 90 bp | GGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCGGTAGATTTCCAGACTaGGAACACTTCTCCAATATT | + |
Preference number: 4 (lower is better) Translates to: GHLHHVVKVLAVTVKPKGGRFPD*EHFSNI Trigger: AATATTGGAGAAGTGTTCCCAGTCTGGAAATCTACC...GCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR GCA 90 bp | CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAAGAGTTTTTCTTCATTaGAGCCAACACATCGCTAGT | + |
Preference number: 4 (lower is better) Translates to: HVVKVLAVTVKPKGSHQRRVFLH*SQHIAS Trigger: ACTAGCGATGTGTTGGCTGCAATGAAGAAAAACTCT...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR GCA 90 bp | TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCATCCTCGATGTGTTTCTaGAATTCTTCTTCCAGATTG | + |
Preference number: 4 (lower is better) Translates to: SHGHLHHVVKVLAVTVKPSSMCF*NSSSRL Trigger: CAATCTGGAAGAAGAATTGCAGAAACACATCGAGGA...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR GCA 90 bp | GTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCAACAGAGTTCACAGGGCTTaGTTCATTCCTTATACACAA | + |
Preference number: 4 (lower is better) Translates to: VKVLAVTVKPKGSHQRVNRVHRA*FIPYTQ Trigger: TTGTGTATAAGGAATGAAGCAAGCCCTGTGAACTCT...GTTGACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CCA 90 bp | TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCACTGTCTCCCAAAAACTaGCTTGGATTTAGAGATAAG | + |
Preference number: 4 (lower is better) Translates to: SHGHLHHVVKVLAVTVKPLSPKN*LGFRDK Trigger: CTTATCTCTAAATCCAAGCCAGTTTTTGGGAGACAG...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CCA 90 bp | CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGATGGCACAGATCCTTGTaGAAGATGAATTTATCCTCA | + |
Preference number: 4 (lower is better) Translates to: HVVKVLAVTVKPKGSHQRWHRSL*KMNLSS Trigger: TGAGGATAAATTCATCTTCCACAAGGATCTGTGCCA...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CCA 90 bp | TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAGCATCACGAGTTTTaGAAATCAACTTTGGACCCT | + |
Preference number: 4 (lower is better) Translates to: SHGHLHHVVKVLAVTVKPKHHEF*KSTLDP Trigger: AGGGTCCAAAGTTGATTTCCAAAACTCGTGATGCTT...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR TCA 90 bp | CATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCAAACATATATATGTCATaGCTTTTTCCCCATCCTGCA | + |
Preference number: 4 (lower is better) Translates to: HLHHVVKVLAVTVKPKGSNIYMS*LFPHPA Trigger: TGCAGGATGGGGAAAAAGTCATGACATATATATGTT...TGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR GCA 90 bp | GTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCCATGCTCATTTAACATaGTTCCTTCTCTTAATTCCT | + |
Preference number: 4 (lower is better) Translates to: VVKVLAVTVKPKGSHQRVHAHLT*FLLLIP Trigger: AGGAATTAAGAGAAGGAAGCATGTTAAATGAGCATG...GACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR GCA 90 bp | TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAATCACTGAACATACATaGTCATTTAACATGCTTCCT | + |
Preference number: 4 (lower is better) Translates to: SHGHLHHVVKVLAVTVKPITEHT*SFNMLP Trigger: AGGAAGCATGTTAAATGAGCATGTATGTTCAGTGAT...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CCA 90 bp | TCGGCCATTCCCTCACCACAGCCGGACCATTTCTCCTCGCTGAGCTaGCAGCACGTGGAGGCAATGCTCACCATCTTCCCGGTGAGGTCG | + |
Preference number: 5 (lower is better) Translates to: SAIPSPQPDHFSSLS*QHVEAMLTIFPVRS Trigger: CGACCTCACCGGGAAGATGGTGAGCATTGCCTCCACGTGCTGCCAGCTCAGCGAGGAGAAATGGTCCGGCTGTGGTGAGGGAATGGCCGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS TCA 90 bp | GGTGGGACAGAGGCCGGAGCAGTCTTCTTGCGTGCCAGCAGACACTaGTGTCTTTCCACTCCACTTTGGCTGCAGCAGCCTGAGAGTCCA | + |
Preference number: 5 (lower is better) Translates to: GGTEAGAVFLRASRH*CLSTPLWLQQPESP Trigger: TGGACTCTCAGGCTGCTGCAGCCAAAGTGGAGTGGAAAGACATCAGTGTCTGCTGGCACGCAAGAAGACTGCTCCGGCCTCTGTCCCACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS GCA 90 bp | CTGGTCCTGGGCTTTGCAGCACTTCTCCAAAAGGCCCGAGAAATCTaGAGTGACAGCCGCCAGCTGCTCCTCTGTCAGTTCAGGCTTTTG | + |
Preference number: 5 (lower is better) Translates to: LVLGFAALLQKAREI*SDSRQLLLCQFRLL Trigger: CAAAAGCCTGAACTGACAGAGGAGCAGCTGGCGGCTGTCACTGCAGATTTCTCGGGCCTTTTGGAGAAGTGCTGCAAAGCCCAGGACCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS TCA 90 bp | GGAGGCAATGCTCACCATCTTCCCGGTGAGGTCGATCAGCTCTGCTaGGGTCAGCTGAGGGGCTTTCCTCGTGTAACCAATAAGGAACAG | + |
Preference number: 5 (lower is better) Translates to: GGNAHHLPGEVDQLC*GQLRGFPRVTNKEQ Trigger: CTGTTCCTTATTGGTTACACGAGGAAAGCCCCTCAGCTGACCTCAGCAGAGCTGATCGACCTCACCGGGAAGATGGTGAGCATTGCCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS TCA 90 bp | CCTGGGCTTTGCAGCACTTCTCCAAAAGGCCCGAGAAATCTGCAGTaGCAGCCGCCAGCTGCTCCTCTGTCAGTTCAGGCTTTTGCTTCA | + |
Preference number: 5 (lower is better) Translates to: PGLCSTSPKGPRNLQ*QPPAAPLSVQAFAS Trigger: TGAAGCAAAAGCCTGAACTGACAGAGGAGCAGCTGGCGGCTGTCACTGCAGATTTCTCGGGCCTTTTGGAGAAGTGCTGCAAAGCCCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CCA 90 bp | CTGTTTTCTTCATGTGCTTTGCAACTCTCGGCAGGTTCTGGAAACTaGAAGGGTGGGACAGAGGCCGGAGCAGTCTTCTTGCGTGCCAGC | + |
Preference number: 5 (lower is better) Translates to: LFSSCALQLSAGSGN*KGGTEAGAVFLRAS Trigger: GCTGGCACGCAAGAAGACTGCTCCGGCCTCTGTCCCACCCTTCCAGTTTCCAGAACCTGCCGAGAGTTGCAAAGCACATGAAGAAAACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CCA 90 bp | CACTGCCCTGTTTTCTTCATGTGCTTTGCAACTCTCGGCAGGTTCTaGAAACTGGAAGGGTGGGACAGAGGCCGGAGCAGTCTTCTTGCG | + |
Preference number: 5 (lower is better) Translates to: HCPVFFMCFATLGRF*KLEGWDRGRSSLLA Trigger: CGCAAGAAGACTGCTCCGGCCTCTGTCCCACCCTTCCAGTTTCCAGAACCTGCCGAGAGTTGCAAAGCACATGAAGAAAACAGGGCAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS TCA 90 bp | TCCTTGTTGTCAGCTTTGCAGCATGCCAGAACGACCTTGTCGTACTaGGCAGCCAAGGACAGAATGGCTGGGGCATACATGAAGGGGTTC | + |
Preference number: 5 (lower is better) Translates to: SLLSALQHARTTLSY*AAKDRMAGAYMKGF Trigger: GAACCCCTTCATGTATGCCCCAGCCATTCTGTCCTTGGCTGCTCAGTACGACAAGGTCGTTCTGGCATGCTGCAAAGCTGACAACAAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS GCA 90 bp | TCTCTTTGTCTGGAAGCACTCCTCCTTGTTGTCAGCTTTGCAGCATaGCAGAACGACCTTGTCGTACTGAGCAGCCAAGGACAGAATGGC | + |
Preference number: 5 (lower is better) Translates to: SLCLEALLLVVSFAA*QNDLVVLSSQGQNG Trigger: GCCATTCTGTCCTTGGCTGCTCAGTACGACAAGGTCGTTCTGGCATGCTGCAAAGCTGACAACAAGGAGGAGTGCTTCCAGACAAAGAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS GCA 90 bp | CACTTCTCCAAAAGGCCCGAGAAATCTGCAGTGACAGCCGCCAGCTaGTCCTCTGTCAGTTCAGGCTTTTGCTTCACCAGGTTAATGAGA | + |
Preference number: 5 (lower is better) Translates to: HFSKRPEKSAVTAAS*SSVSSGFCFTRLMR Trigger: TCTCATTAACCTGGTGAAGCAAAAGCCTGAACTGACAGAGGAGCAGCTGGCGGCTGTCACTGCAGATTTCTCGGGCCTTTTGGAGAAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS GCA 90 bp | TCTGCAGTGACAGCCGCCAGCTGCTCCTCTGTCAGTTCAGGCTTTTaGTTCACCAGGTTAATGAGAAGCTCTTGTTTCATGGTCTGTAGG | + |
Preference number: 5 (lower is better) Translates to: SAVTAASCSSVSSGF*FTRLMRSSCFMVCR Trigger: CCTACAGACCATGAAACAAGAGCTTCTCATTAACCTGGTGAAGCAAAAGCCTGAACTGACAGAGGAGCAGCTGGCGGCTGTCACTGCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS GCA 90 bp | CACTGGGAGGAATCTAACGTGGAAGCTATCCCAAACTCATTTTCGTaGAATGCTTTGGACGCAGCGAAATGTAGCAGGAGGATGAGGGAA | + |
Preference number: 5 (lower is better) Translates to: HWEESNVEAIPNSFS*NALDAAKCSRRMRE Trigger: TTCCCTCATCCTCCTGCTACATTTCGCTGCGTCCAAAGCATTGCACGAAAATGAGTTTGGGATAGCTTCCACGTTAGATTCCTCCCAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042755.7 ENSMUST00000200693.2 |
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CDS CCA 90 bp | CTGGTGATGCATAGCCTCCTGTTGGAATACGAAGAGTTGCAGCAGTaGCTGATACCAGAGTTCACAGGGCTTGCTTCATTCCTTATACAC | + |
Preference number: 5 (lower is better) Translates to: LVMHSLLLEYEELQQ*LIPEFTGLASFLIH Trigger: GTGTATAAGGAATGAAGCAAGCCCTGTGAACTCTGGTATCAGCCACTGCTGCAACTCTTCGTATTCCAACAGGAGGCTATGCATCACCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CAA 90 bp | GTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCAACAGAGCGCAGCTTTGCTaGGACAGTGCCTGGCTCTCC | + |
Preference number: 5 (lower is better) Translates to: VKVLAVTVKPKGSHQRVNRAQLC*DSAWLS Trigger: GGAGAGCCAGGCACTGTCCAAGCAAAGCTGCGCTCT...GTTGACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CCA 90 bp | AAGGTGATGGTAGCTATGCTAAGCACATTCTTCTCCGTCACGCACTaGGAGGAATCTAACGTGGAAGCTATCCCAAACTCATTTTCGTGC | + |
Preference number: 5 (lower is better) Translates to: KVMVAMLSTFFSVTH*EESNVEAIPNSFSC Trigger: GCACGAAAATGAGTTTGGGATAGCTTCCACGTTAGATTCCTCCCAGTGCGTGACGGAGAAGAATGTGCTTAGCATAGCTACCATCACCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042755.7 ENSMUST00000200693.2 |
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CDS-3UTR CAA 90 bp | GTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCAACTCCTGGTCCTGGGCTTaGCAGCACTTCTCCAAAAGG | + |
Preference number: 5 (lower is better) Translates to: VKVLAVTVKPKGSHQRVNSWSWA*QHFSKR Trigger: CCTTTTGGAGAAGTGCTGCAAAGCCCAGGACCAGGA...GTTGACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CAA 90 bp | CATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCAAAGCACTCCTCCTTGTaGTCAGCTTTGCAGCATGCC | + |
Preference number: 5 (lower is better) Translates to: HLHHVVKVLAVTVKPKGSKHSSL*SALQHA Trigger: GGCATGCTGCAAAGCTGACAACAAGGAGGAGTGCTT...TGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS TCA 90 bp | CTGCAGCAGCCTGAGAGTCCATACTTGTTAGAGAGTTCCGTCTCATaGCAAATTTCATCCAGAAACACAGATAGCTGGCTTTCTAAACAC | + |
Preference number: 5 (lower is better) Translates to: LQQPESPYLLESSVS*QISSRNTDSWLSKH Trigger: GTGTTTAGAAAGCCAGCTATCTGTGTTTCTGGATGAAATTTGTCATGAGACGGAACTCTCTAACAAGTATGGACTCTCAGGCTGCTGCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS TCA 90 bp | CTTGGATTTAGAGATAAGCCTTCAGGTTTGACGCCATTCTCTGCGTaGATTATGCAGAAGCCTAGTTGGATCATGGGTAATTTGCAGCAC | + |
Preference number: 5 (lower is better) Translates to: LGFRDKPSGLTPFSA*IMQKPSWIMGNLQH Trigger: GTGCTGCAAATTACCCATGATCCAACTAGGCTTCTGCATAATTCACGCAGAGAATGGCGTCAAACCTGAAGGCTTATCTCTAAATCCAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS TCA 90 bp | TGTCTCCCAAAAACTGGCTTGGATTTAGAGATAAGCCTTCAGGTTTaGCGCCATTCTCTGCGTGAATTATGCAGAAGCCTAGTTGGATCA | + |
Preference number: 5 (lower is better) Translates to: CLPKTGLDLEISLQV*RHSLRELCRSLVGS Trigger: TGATCCAACTAGGCTTCTGCATAATTCACGCAGAGAATGGCGTCAAACCTGAAGGCTTATCTCTAAATCCAAGCCAGTTTTTGGGAGACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CAA 90 bp | GTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCTTGGAATACGAAGAGTaGCAGCAGTGGCTGATACCA | + |
Preference number: 5 (lower is better) Translates to: VVKVLAVTVKPKGSHQRVLEYEE*QQWLIP Trigger: TGGTATCAGCCACTGCTGCAACTCTTCGTATTCCAA...GACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CAA 90 bp | TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCACCTGAGAGTCCATACTaGTTAGAGAGTTCCGTCTCA | + |
Preference number: 5 (lower is better) Translates to: SHGHLHHVVKVLAVTVKPPESPY*LESSVS Trigger: TGAGACGGAACTCTCTAACAAGTATGGACTCTCAGG...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CAA 90 bp | CACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAACAGAGTTCACAGGGCTaGCTTCATTCCTTATACACA | + |
Preference number: 5 (lower is better) Translates to: HHVVKVLAVTVKPKGSHQQSSQG*LHSLYT Trigger: TGTGTATAAGGAATGAAGCAAGCCCTGTGAACTCTG...TTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CAA 90 bp | GGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCGCTTGGCACAGATCCTaGTGGAAGATGAATTTATCC | + |
Preference number: 5 (lower is better) Translates to: GHLHHVVKVLAVTVKPKGAWHRS*WKMNLS Trigger: GGATAAATTCATCTTCCACAAGGATCTGTGCCAAGC...GCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CAA 90 bp | CACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAATGTCAGTTCAGGCTTTaGCTTCACCAGGTTAATGAG | + |
Preference number: 5 (lower is better) Translates to: HHVVKVLAVTVKPKGSHQCQFRL*LHQVNE Trigger: CTCATTAACCTGGTGAAGCAAAAGCCTGAACTGACA...TTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CCA 90 bp | CATCCAGGTAGATTTCCAGACTGGGAACACTTCTCCAATATTTCCTaGTACGTTTTAGCAATTCTTAGAATGACTGAGACAGGAAGGTTG | + |
Preference number: 5 (lower is better) Translates to: HPGRFPDWEHFSNIS*YVLAILRMTETGRL Trigger: CAACCTTCCTGTCTCAGTCATTCTAAGAATTGCTAAAACGTACCAGGAAATATTGGAGAAGTGTTCCCAGTCTGGAAATCTACCTGGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CAA 90 bp | CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGGTTGGGGTGAGTTCTaGAGTATTCATGAAGAAAGC | + |
Preference number: 5 (lower is better) Translates to: HVVKVLAVTVKPKGSHQRGWGEF*SIHEES Trigger: GCTTTCTTCATGAATACTCAAGAACTCACCCCAACC...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CAA 90 bp | CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGATGGATCATGGGTAATTaGCAGCACTCTGCTATTTTG | + |
Preference number: 5 (lower is better) Translates to: HVVKVLAVTVKPKGSHQRWIMGN*QHSAIL Trigger: CAAAATAGCAGAGTGCTGCAAATTACCCATGATCCA...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CAA 90 bp | TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCACTCCCAAAAACTGGCTaGGATTTAGAGATAAGCCTT | + |
Preference number: 5 (lower is better) Translates to: SHGHLHHVVKVLAVTVKPLPKTG*DLEISL Trigger: AAGGCTTATCTCTAAATCCAAGCCAGTTTTTGGGAG...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CAA 90 bp | TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGCATCACGAGTTTaGGAAATCAACTTTGGACCC | + |
Preference number: 5 (lower is better) Translates to: SHGHLHHVVKVLAVTVKPKASRV*EINFGP Trigger: GGGTCCAAAGTTGATTTCCAAAACTCGTGATGCTTT...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS GCA 90 bp | TCTCTGCGTGAATTATGCAGAAGCCTAGTTGGATCATGGGTAATTTaGAGCACTCTGCTATTTTGCTTGACAGAATATTTTGTTGAGAAC | + |
Preference number: 5 (lower is better) Translates to: SLRELCRSLVGSWVI*STLLFCLTEYFVEN Trigger: GTTCTCAACAAAATATTCTGTCAAGCAAAATAGCAGAGTGCTGCAAATTACCCATGATCCAACTAGGCTTCTGCATAATTCACGCAGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CAA 90 bp | CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGACTTCTCTTAATTCCTTaGCAATGGATGCTCTCTTTG | + |
Preference number: 5 (lower is better) Translates to: HVVKVLAVTVKPKGSHQRLLLIP*QWMLSL Trigger: CAAAGAGAGCATCCATTGCAAAGGAATTAAGAGAAG...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS-3UTR CAA 90 bp | CACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAACAGCACTCTGCTATTTaGCTTGACAGAATATTTTGT | + |
Preference number: 5 (lower is better) Translates to: HHVVKVLAVTVKPKGSHQQHSAI*LDRIFC Trigger: ACAAAATATTCTGTCAAGCAAAATAGCAGAGTGCTG...TTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS TCA 72 bp | GGCAGCACGTGGAGGCAATGCTCACCATCTTCCCGGTaGGGTCGATCAGCTCTGCTGAGGTCAGCTGAGGGG | + |
Preference number: 6 (lower is better) Translates to: GSTWRQCSPSSR*GRSALLRSAEG Trigger: CCCCTCAGCTGACCTCAGCAGAGCTGATCGACCTCACCGGGAAGATGGTGAGCATTGCCTCCACGTGCTGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CCA 72 bp | CCCTCACCACAGCCGGACCATTTCTCCTCGCTGAGCTaGCAGCACGTGGAGGCAATGCTCACCATCTTCCCG | + |
Preference number: 6 (lower is better) Translates to: PSPQPDHFSSLS*QHVEAMLTIFP Trigger: CGGGAAGATGGTGAGCATTGCCTCCACGTGCTGCCAGCTCAGCGAGGAGAAATGGTCCGGCTGTGGTGAGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS TCA 72 bp | GAGGCCGGAGCAGTCTTCTTGCGTGCCAGCAGACACTaGTGTCTTTCCACTCCACTTTGGCTGCAGCAGCCT | + |
Preference number: 6 (lower is better) Translates to: EAGAVFLRASRH*CLSTPLWLQQP Trigger: AGGCTGCTGCAGCCAAAGTGGAGTGGAAAGACATCAGTGTCTGCTGGCACGCAAGAAGACTGCTCCGGCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS GCA 72 bp | ACTGGAAGGGTGGGACAGAGGCCGGAGCAGTCTTCTTaGGTGCCAGCAGACACTGATGTCTTTCCACTCCAC | + |
Preference number: 6 (lower is better) Translates to: TGRVGQRPEQSS*VPADTDVFPLH Trigger: GTGGAGTGGAAAGACATCAGTGTCTGCTGGCACGCAAGAAGACTGCTCCGGCCTCTGTCCCACCCTTCCAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS TCA 72 bp | GCTCACCATCTTCCCGGTGAGGTCGATCAGCTCTGCTaGGGTCAGCTGAGGGGCTTTCCTCGTGTAACCAAT | + |
Preference number: 6 (lower is better) Translates to: AHHLPGEVDQLC*GQLRGFPRVTN Trigger: ATTGGTTACACGAGGAAAGCCCCTCAGCTGACCTCAGCAGAGCTGATCGACCTCACCGGGAAGATGGTGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS GCA 72 bp | GAAGGGTGGGACAGAGGCCGGAGCAGTCTTCTTGCGTaGCAGCAGACACTGATGTCTTTCCACTCCACTTTG | + |
Preference number: 6 (lower is better) Translates to: EGWDRGRSSLLA*QQTLMSFHSTL Trigger: CAAAGTGGAGTGGAAAGACATCAGTGTCTGCTGGCACGCAAGAAGACTGCTCCGGCCTCTGTCCCACCCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS GCA 72 bp | GGCTTTGCAGCACTTCTCCAAAAGGCCCGAGAAATCTaGAGTGACAGCCGCCAGCTGCTCCTCTGTCAGTTC | + |
Preference number: 6 (lower is better) Translates to: GFAALLQKAREI*SDSRQLLLCQF Trigger: GAACTGACAGAGGAGCAGCTGGCGGCTGTCACTGCAGATTTCTCGGGCCTTTTGGAGAAGTGCTGCAAAGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CCA 72 bp | TCATGTGCTTTGCAACTCTCGGCAGGTTCTGGAAACTaGAAGGGTGGGACAGAGGCCGGAGCAGTCTTCTTG | + |
Preference number: 6 (lower is better) Translates to: SCALQLSAGSGN*KGGTEAGAVFL Trigger: CAAGAAGACTGCTCCGGCCTCTGTCCCACCCTTCCAGTTTCCAGAACCTGCCGAGAGTTGCAAAGCACATGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CCA 72 bp | AGTCTCCTAAGGTCTGGTAGAGAGCGCAGCTTTGCTTaGACAGTGCCTGGCTCTCCTCGATGTGTTTCTGCA | + |
Preference number: 6 (lower is better) Translates to: SLLRSGRERSFA*TVPGSPRCVSA Trigger: TGCAGAAACACATCGAGGAGAGCCAGGCACTGTCCAAGCAAAGCTGCGCTCTCTACCAGACCTTAGGAGACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CAA 72 bp | CCCTCTTCTGTGAAACAGACTTCCTGGTCCTGGGCTTaGCAGCACTTCTCCAAAAGGCCCGAGAAATCTGCA | + |
Preference number: 6 (lower is better) Translates to: PSSVKQTSWSWA*QHFSKRPEKSA Trigger: TGCAGATTTCTCGGGCCTTTTGGAGAAGTGCTGCAAAGCCCAGGACCAGGAAGTCTGTTTCACAGAAGAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CAA 90 bp | AACTTTGGACCCTCTTCTGTGAAACAGACTTCCTGGTCCTGGGCTTaGCAGCACTTCTCCAAAAGGCCCGAGAAATCTGCAGTGACAGCC | + |
Preference number: 6 (lower is better) Translates to: NFGPSSVKQTSWSWA*QHFSKRPEKSAVTA Trigger: GGCTGTCACTGCAGATTTCTCGGGCCTTTTGGAGAAGTGCTGCAAAGCCCAGGACCAGGAAGTCTGTTTCACAGAAGAGGGTCCAAAGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CAA 72 bp | ATGGATGCTCTCTTTGTCTGGAAGCACTCCTCCTTGTaGTCAGCTTTGCAGCATGCCAGAACGACCTTGTCG | + |
Preference number: 6 (lower is better) Translates to: MDALFVWKHSSL*SALQHARTTLS Trigger: CGACAAGGTCGTTCTGGCATGCTGCAAAGCTGACAACAAGGAGGAGTGCTTCCAGACAAAGAGAGCATCCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CAA 72 bp | GCAATGGATGCTCTCTTTGTCTGGAAGCACTCCTCCTaGTTGTCAGCTTTGCAGCATGCCAGAACGACCTTG | + |
Preference number: 6 (lower is better) Translates to: AMDALFVWKHSS*LSALQHARTTL Trigger: CAAGGTCGTTCTGGCATGCTGCAAAGCTGACAACAAGGAGGAGTGCTTCCAGACAAAGAGAGCATCCATTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CAA 90 bp | GAATCTAACGTGGAAGCTATCCCAAACTCATTTTCGTGCAATGCTTaGGACGCAGCGAAATGTAGCAGGAGGATGAGGGAAGCGGGTGTG | + |
Preference number: 6 (lower is better) Translates to: ESNVEAIPNSFSCNA*DAAKCSRRMREAGV Trigger: CACACCCGCTTCCCTCATCCTCCTGCTACATTTCGCTGCGTCCAAAGCATTGCACGAAAATGAGTTTGGGATAGCTTCCACGTTAGATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042755.7 ENSMUST00000200693.2 |
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CDS TCA 72 bp | CAGGGCTTGCTTCATTCCTTATACACAAATGTCCAATaGAAATGTCGGCCATTCCCTCACCACAGCCGGACC | + |
Preference number: 6 (lower is better) Translates to: QGLLHSLYTNVQ*KCRPFPHHSRT Trigger: GGTCCGGCTGTGGTGAGGGAATGGCCGACATTTTCATTGGACATTTGTGTATAAGGAATGAAGCAAGCCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS TCA 72 bp | GCCTCCTGTTGGAATACGAAGAGTTGCAGCAGTGGCTaGTACCAGAGTTCACAGGGCTTGCTTCATTCCTTA | + |
Preference number: 6 (lower is better) Translates to: ASCWNTKSCSSG*YQSSQGLLHSL Trigger: TAAGGAATGAAGCAAGCCCTGTGAACTCTGGTATCAGCCACTGCTGCAACTCTTCGTATTCCAACAGGAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS GCA 72 bp | ACAGCCGCCAGCTGCTCCTCTGTCAGTTCAGGCTTTTaGTTCACCAGGTTAATGAGAAGCTCTTGTTTCATG | + |
Preference number: 6 (lower is better) Translates to: TAASCSSVSSGF*FTRLMRSSCFM Trigger: CATGAAACAAGAGCTTCTCATTAACCTGGTGAAGCAAAAGCCTGAACTGACAGAGGAGCAGCTGGCGGCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CAA 72 bp | GACAGCCGCCAGCTGCTCCTCTGTCAGTTCAGGCTTTaGCTTCACCAGGTTAATGAGAAGCTCTTGTTTCAT | + |
Preference number: 6 (lower is better) Translates to: DSRQLLLCQFRL*LHQVNEKLLFH Trigger: ATGAAACAAGAGCTTCTCATTAACCTGGTGAAGCAAAAGCCTGAACTGACAGAGGAGCAGCTGGCGGCTGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CAA 90 bp | CTCAGAAAACTGGTGATGCATAGCCTCCTGTTGGAATACGAAGAGTaGCAGCAGTGGCTGATACCAGAGTTCACAGGGCTTGCTTCATTC | + |
Preference number: 6 (lower is better) Translates to: LRKLVMHSLLLEYEE*QQWLIPEFTGLASF Trigger: GAATGAAGCAAGCCCTGTGAACTCTGGTATCAGCCACTGCTGCAACTCTTCGTATTCCAACAGGAGGCTATGCATCACCAGTTTTCTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS TCA 72 bp | CAGAATGGCTGGGGCATACATGAAGGGGTTCCTCCTTaGCACTTCATAGATGAACCTGTTCATGAACACTGC | + |
Preference number: 6 (lower is better) Translates to: QNGWGIHEGVPP*HFIDEPVHEHC Trigger: GCAGTGTTCATGAACAGGTTCATCTATGAAGTGTCAAGGAGGAACCCCTTCATGTATGCCCCAGCCATTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS TCA 72 bp | CACGAGTTTTGGAAATCAACTTTGGACCCTCTTCTGTaGAACAGACTTCCTGGTCCTGGGCTTTGCAGCACT | + |
Preference number: 6 (lower is better) Translates to: HEFWKSTLDPLL*NRLPGPGLCST Trigger: AGTGCTGCAAAGCCCAGGACCAGGAAGTCTGTTTCACAGAAGAGGGTCCAAAGTTGATTTCCAAAACTCGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CAA 72 bp | CTGTTCATGAACACTGCCCTGTTTTCTTCATGTGCTTaGCAACTCTCGGCAGGTTCTGGAAACTGGAAGGGT | + |
Preference number: 6 (lower is better) Translates to: LFMNTALFSSCA*QLSAGSGNWKG Trigger: ACCCTTCCAGTTTCCAGAACCTGCCGAGAGTTGCAAAGCACATGAAGAAAACAGGGCAGTGTTCATGAACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CAA 72 bp | TCATCCCTCAGAAAACTGGTGATGCATAGCCTCCTGTaGGAATACGAAGAGTTGCAGCAGTGGCTGATACCA | + |
Preference number: 6 (lower is better) Translates to: SSLRKLVMHSLL*EYEELQQWLIP Trigger: TGGTATCAGCCACTGCTGCAACTCTTCGTATTCCAACAGGAGGCTATGCATCACCAGTTTTCTGAGGGATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CAA 90 bp | TCGCCAGAGTTTTTCTTCATTGCAGCCAACACATCGCTAGTCATTTaGTTCACTTCCTCCTCGGTGGCTTCCGGAACAAACTGGGTAAAG | + |
Preference number: 6 (lower is better) Translates to: SPEFFFIAANTSLVI*FTSSSVASGTNWVK Trigger: CTTTACCCAGTTTGTTCCGGAAGCCACCGAGGAGGAAGTGAACAAAATGACTAGCGATGTGTTGGCTGCAATGAAGAAAAACTCTGGCGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042755.7 ENSMUST00000200693.2 |
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CDS GCA 72 bp | GAATCTAACGTGGAAGCTATCCCAAACTCATTTTCGTaGAATGCTTTGGACGCAGCGAAATGTAGCAGGAGG | + |
Preference number: 6 (lower is better) Translates to: ESNVEAIPNSFS*NALDAAKCSRR Trigger: CCTCCTGCTACATTTCGCTGCGTCCAAAGCATTGCACGAAAATGAGTTTGGGATAGCTTCCACGTTAGATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042755.7 ENSMUST00000200693.2 |
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CDS GCA 72 bp | GAACCTGTTCATGAACACTGCCCTGTTTTCTTCATGTaGTTTGCAACTCTCGGCAGGTTCTGGAAACTGGAA | + |
Preference number: 6 (lower is better) Translates to: EPVHEHCPVFFM*FATLGRFWKLE Trigger: TTCCAGTTTCCAGAACCTGCCGAGAGTTGCAAAGCACATGAAGAAAACAGGGCAGTGTTCATGAACAGGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CAA 72 bp | TTTTTCTTCATTGCAGCCAACACATCGCTAGTCATTTaGTTCACTTCCTCCTCGGTGGCTTCCGGAACAAAC | + |
Preference number: 6 (lower is better) Translates to: FFFIAANTSLVI*FTSSSVASGTN Trigger: GTTTGTTCCGGAAGCCACCGAGGAGGAAGTGAACAAAATGACTAGCGATGTGTTGGCTGCAATGAAGAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042755.7 ENSMUST00000200693.2 |
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CDS CAA 90 bp | TTAACATGCTTCCTTCTCTTAATTCCTTTGCAATGGATGCTCTCTTaGTCTGGAAGCACTCCTCCTTGTTGTCAGCTTTGCAGCATGCCA | + |
Preference number: 6 (lower is better) Translates to: LTCFLLLIPLQWMLS*SGSTPPCCQLCSMP Trigger: TGGCATGCTGCAAAGCTGACAACAAGGAGGAGTGCTTCCAGACAAAGAGAGCATCCATTGCAAAGGAATTAAGAGAAGGAAGCATGTTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS TCA 72 bp | TCGATGTGTTTCTGCAATTCTTCTTCCAGATTGTCCTaGCATCCAGGTAGATTTCCAGACTGGGAACACTTC | + |
Preference number: 6 (lower is better) Translates to: SMCFCNSSSRLS*HPGRFPDWEHF Trigger: GAAGTGTTCCCAGTCTGGAAATCTACCTGGATGTCAGGACAATCTGGAAGAAGAATTGCAGAAACACATCGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CAA 72 bp | TTCCTTCTCTTAATTCCTTTGCAATGGATGCTCTCTTaGTCTGGAAGCACTCCTCCTTGTTGTCAGCTTTGC | + |
Preference number: 6 (lower is better) Translates to: FLLLIPLQWMLS*SGSTPPCCQLC Trigger: GCAAAGCTGACAACAAGGAGGAGTGCTTCCAGACAAAGAGAGCATCCATTGCAAAGGAATTAAGAGAAGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS TCA 72 bp | AAAACTGGCTTGGATTTAGAGATAAGCCTTCAGGTTTaGCGCCATTCTCTGCGTGAATTATGCAGAAGCCTA | + |
Preference number: 6 (lower is better) Translates to: KTGLDLEISLQV*RHSLRELCRSL Trigger: TAGGCTTCTGCATAATTCACGCAGAGAATGGCGTCAAACCTGAAGGCTTATCTCTAAATCCAAGCCAGTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS GCA 72 bp | GTTGCAGCAGTGGCTGATACCAGAGTTCACAGGGCTTaGTTCATTCCTTATACACAAATGTCCAATGAAAAT | + |
Preference number: 6 (lower is better) Translates to: VAAVADTRVHRA*FIPYTQMSNEN Trigger: ATTTTCATTGGACATTTGTGTATAAGGAATGAAGCAAGCCCTGTGAACTCTGGTATCAGCCACTGCTGCAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS GCA 72 bp | GTTGGATCATGGGTAATTTGCAGCACTCTGCTATTTTaGTTGACAGAATATTTTGTTGAGAACATATATATG | + |
Preference number: 6 (lower is better) Translates to: VGSWVICSTLLF*LTEYFVENIYM Trigger: CATATATATGTTCTCAACAAAATATTCTGTCAAGCAAAATAGCAGAGTGCTGCAAATTACCCATGATCCAAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |
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CDS CAA 72 bp | GGATCATGGGTAATTTGCAGCACTCTGCTATTTTGCTaGACAGAATATTTTGTTGAGAACATATATATGTCA | + |
Preference number: 6 (lower is better) Translates to: GSWVICSTLLFC*TEYFVENIYMS Trigger: TGACATATATATGTTCTCAACAAAATATTCTGTCAAGCAAAATAGCAGAGTGCTGCAAATTACCCATGATCC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042755.7 |