RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AFP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054932

Ensembl transcript IDs: ENSMUST00000042755.7, ENSMUST00000200693.2

Found 106 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp CATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACTCCTCGTGGATGTaGGCCACATCCAGGGCCAGC +
Preference number: 4 (lower is better)
Translates to: HLHHVVKVLAVTVKPKGSHSSWM*ATSRAS
Trigger: GCTGGCCCTGGATGTGGCTCACATCCACGAGGAGTG...TGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR TCA 90 bp GTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCTGGCTGGGGCATACATaGAGGGGTTCCTCCTTGACA +
Preference number: 4 (lower is better)
Translates to: VVKVLAVTVKPKGSHQRVWLGHT*RGSSLT
Trigger: TGTCAAGGAGGAACCCCTTCATGTATGCCCCAGCCA...GACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CCA 90 bp CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGCAGGTTCTGGAAACTaGAAGGGTGGGACAGAGGCC +
Preference number: 4 (lower is better)
Translates to: HVVKVLAVTVKPKGSHQRAGSGN*KGGTEA
Trigger: GGCCTCTGTCCCACCCTTCCAGTTTCCAGAACCTGC...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CCA 90 bp TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCATTCTCCTCGCTGAGCTaGCAGCACGTGGAGGCAATG +
Preference number: 4 (lower is better)
Translates to: SHGHLHHVVKVLAVTVKPFSSLS*QHVEAM
Trigger: CATTGCCTCCACGTGCTGCCAGCTCAGCGAGGAGAA...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR GCA 90 bp TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCACCACTCCACTTTGGCTaGAGCAGCCTGAGAGTCCAT +
Preference number: 4 (lower is better)
Translates to: SHGHLHHVVKVLAVTVKPPLHFG*SSLRVH
Trigger: ATGGACTCTCAGGCTGCTGCAGCCAAAGTGGAGTGG...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR GCA 90 bp CATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACCGGAGCAGTCTTCTTaGGTGCCAGCAGACACTGAT +
Preference number: 4 (lower is better)
Translates to: HLHHVVKVLAVTVKPKGSPEQSS*VPADTD
Trigger: ATCAGTGTCTGCTGGCACGCAAGAAGACTGCTCCGG...TGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR GCA 90 bp GTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCAACGCTTTGCTTGGACAGTaGCTGGCTCTCCTCGATGTG +
Preference number: 4 (lower is better)
Translates to: VKVLAVTVKPKGSHQRVNALLGQ*LALLDV
Trigger: CACATCGAGGAGAGCCAGGCACTGTCCAAGCAAAGC...GTTGACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR GCA 90 bp TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCACCTGGTCCTGGGCTTTaGAGCACTTCTCCAAAAGGC +
Preference number: 4 (lower is better)
Translates to: SHGHLHHVVKVLAVTVKPPGPGL*STSPKG
Trigger: GCCTTTTGGAGAAGTGCTGCAAAGCCCAGGACCAGG...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CCA 90 bp CACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAATCCAGCGAGTTTCCTTaGCAACACTCCTCGTGGATG +
Preference number: 4 (lower is better)
Translates to: HHVVKVLAVTVKPKGSHQSSEFP*QHSSWM
Trigger: CATCCACGAGGAGTGTTGCCAAGGAAACTCGCTGGA...TTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CCA 90 bp CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGACAGACTTCCTGGTCCTaGGCTTTGCAGCACTTCTCC +
Preference number: 4 (lower is better)
Translates to: HVVKVLAVTVKPKGSHQRQTSWS*ALQHFS
Trigger: GGAGAAGTGCTGCAAAGCCCAGGACCAGGAAGTCTG...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR GCA 90 bp CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGATGGTCTGTAGGGCTTTaGCCTGAGCTTGGCACAGAT +
Preference number: 4 (lower is better)
Translates to: HVVKVLAVTVKPKGSHQRWSVGL*PELGTD
Trigger: ATCTGTGCCAAGCTCAGGGCAAAGCCCTACAGACCA...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CCA 90 bp CATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCAGTGAAACAGACTTCCTaGTCCTGGGCTTTGCAGCAC +
Preference number: 4 (lower is better)
Translates to: HLHHVVKVLAVTVKPKGSVKQTS*SWALQH
Trigger: GTGCTGCAAAGCCCAGGACCAGGAAGTCTGTTTCAC...TGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR TCA 90 bp CATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCAGAAGGGGTTCCTCCTTaGCACTTCATAGATGAACCT +
Preference number: 4 (lower is better)
Translates to: HLHHVVKVLAVTVKPKGSEGVPP*HFIDEP
Trigger: AGGTTCATCTATGAAGTGTCAAGGAGGAACCCCTTC...TGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR TCA 90 bp GTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCTCTTCCAGATTGTCCTaGCATCCAGGTAGATTTCCA +
Preference number: 4 (lower is better)
Translates to: VVKVLAVTVKPKGSHQRVSSRLS*HPGRFP
Trigger: TGGAAATCTACCTGGATGTCAGGACAATCTGGAAGA...GACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR GCA 90 bp GGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCCTCATTTTCGTGCAATaGTTTGGACGCAGCGAAATG +
Preference number: 4 (lower is better)
Translates to: GHLHHVVKVLAVTVKPKGLIFVQ*FGRSEM
Trigger: CATTTCGCTGCGTCCAAAGCATTGCACGAAAATGAG...GCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR GCA 90 bp CACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAATTTCTTCATGTGCTTTaGAACTCTCGGCAGGTTCTG +
Preference number: 4 (lower is better)
Translates to: HHVVKVLAVTVKPKGSHQFLHVL*NSRQVL
Trigger: CAGAACCTGCCGAGAGTTGCAAAGCACATGAAGAAA...TTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR GCA 90 bp CATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACCTGTTTTCTTCATGTaGTTTGCAACTCTCGGCAGG +
Preference number: 4 (lower is better)
Translates to: HLHHVVKVLAVTVKPKGSPVFFM*FATLGR
Trigger: CCTGCCGAGAGTTGCAAAGCACATGAAGAAAACAGG...TGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR GCA 90 bp GTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCTTTGACGCCATTCTCTaGGTGAATTATGCAGAAGCC +
Preference number: 4 (lower is better)
Translates to: VVKVLAVTVKPKGSHQRVFDAIL*VNYAEA
Trigger: GGCTTCTGCATAATTCACGCAGAGAATGGCGTCAAA...GACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CCA 90 bp CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGAAGAGTTGCAGCAGTaGCTGATACCAGAGTTCACA +
Preference number: 4 (lower is better)
Translates to: HVVKVLAVTVKPKGSHQREELQQ*LIPEFT
Trigger: TGTGAACTCTGGTATCAGCCACTGCTGCAACTCTTC...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CCA 90 bp GTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCAACTTTATCCTCAGAGAATaGGGGAGGGGCATAGGTTTC +
Preference number: 4 (lower is better)
Translates to: VKVLAVTVKPKGSHQRVNFILRE*GRGIGF
Trigger: GAAACCTATGCCCCTCCCCCATTCTCTGAGGATAAA...GTTGACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CCA 90 bp GTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCAACGAAGCTCTTGTTTCATaGTCTGTAGGGCTTTGCCCT +
Preference number: 4 (lower is better)
Translates to: VKVLAVTVKPKGSHQRVNEALVS*SVGLCP
Trigger: AGGGCAAAGCCCTACAGACCATGAAACAAGAGCTTC...GTTGACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR TCA 90 bp CACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAGTTGGGGTGAGTTCTTaGGTATTCATGAAGAAAGCT +
Preference number: 4 (lower is better)
Translates to: HHVVKVLAVTVKPKGSHQVGVSS*VFMKKA
Trigger: AGCTTTCTTCATGAATACTCAAGAACTCACCCCAAC...TTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR GCA 90 bp GTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCGTCAGTTCAGGCTTTTaGTTCACCAGGTTAATGAGA +
Preference number: 4 (lower is better)
Translates to: VVKVLAVTVKPKGSHQRVVSSGF*FTRLMR
Trigger: TCTCATTAACCTGGTGAAGCAAAAGCCTGAACTGAC...GACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CCA 90 bp CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGATTTCGTGCAATGCTTTaGACGCAGCGAAATGTAGCA +
Preference number: 4 (lower is better)
Translates to: HVVKVLAVTVKPKGSHQRFRAML*TQRNVA
Trigger: TGCTACATTTCGCTGCGTCCAAAGCATTGCACGAAA...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CCA 90 bp CACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAAACACAGATAGCTaGCTTTCTAAACACCCATCG +
Preference number: 4 (lower is better)
Translates to: HHVVKVLAVTVKPKGSHQRNTDS*LSKHPS
Trigger: CGATGGGTGTTTAGAAAGCCAGCTATCTGTGTTTCT...TTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR TCA 90 bp CACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAGTTCTTGAGTATTCATaGAGAAAGCTTGCCATGAAC +
Preference number: 4 (lower is better)
Translates to: HHVVKVLAVTVKPKGSHQVLEYS*RKLAMN
Trigger: GTTCATGGCAAGCTTTCTTCATGAATACTCAAGAAC...TTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR GCA 90 bp CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGGATCATGGGTAATTTaGAGCACTCTGCTATTTTGC +
Preference number: 4 (lower is better)
Translates to: HVVKVLAVTVKPKGSHQRGSWVI*STLLFC
Trigger: GCAAAATAGCAGAGTGCTGCAAATTACCCATGATCC...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CCA 90 bp TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAATAATGGTTGTTGCCTaGAGGTTTCGGGATCCAAAT +
Preference number: 4 (lower is better)
Translates to: SHGHLHHVVKVLAVTVKPIMVVA*RFRDPN
Trigger: ATTTGGATCCCGAAACCTCCAGGCAACAACCATTAT...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CCA 90 bp TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAATGCAGAAGCCTAGTTaGATCATGGGTAATTTGCAG +
Preference number: 4 (lower is better)
Translates to: SHGHLHHVVKVLAVTVKPMQKPS*IMGNLQ
Trigger: CTGCAAATTACCCATGATCCAACTAGGCTTCTGCAT...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CCA 90 bp GGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCGGTAGATTTCCAGACTaGGAACACTTCTCCAATATT +
Preference number: 4 (lower is better)
Translates to: GHLHHVVKVLAVTVKPKGGRFPD*EHFSNI
Trigger: AATATTGGAGAAGTGTTCCCAGTCTGGAAATCTACC...GCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR GCA 90 bp CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAAGAGTTTTTCTTCATTaGAGCCAACACATCGCTAGT +
Preference number: 4 (lower is better)
Translates to: HVVKVLAVTVKPKGSHQRRVFLH*SQHIAS
Trigger: ACTAGCGATGTGTTGGCTGCAATGAAGAAAAACTCT...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR GCA 90 bp TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCATCCTCGATGTGTTTCTaGAATTCTTCTTCCAGATTG +
Preference number: 4 (lower is better)
Translates to: SHGHLHHVVKVLAVTVKPSSMCF*NSSSRL
Trigger: CAATCTGGAAGAAGAATTGCAGAAACACATCGAGGA...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR GCA 90 bp GTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCAACAGAGTTCACAGGGCTTaGTTCATTCCTTATACACAA +
Preference number: 4 (lower is better)
Translates to: VKVLAVTVKPKGSHQRVNRVHRA*FIPYTQ
Trigger: TTGTGTATAAGGAATGAAGCAAGCCCTGTGAACTCT...GTTGACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CCA 90 bp TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCACTGTCTCCCAAAAACTaGCTTGGATTTAGAGATAAG +
Preference number: 4 (lower is better)
Translates to: SHGHLHHVVKVLAVTVKPLSPKN*LGFRDK
Trigger: CTTATCTCTAAATCCAAGCCAGTTTTTGGGAGACAG...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CCA 90 bp CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGATGGCACAGATCCTTGTaGAAGATGAATTTATCCTCA +
Preference number: 4 (lower is better)
Translates to: HVVKVLAVTVKPKGSHQRWHRSL*KMNLSS
Trigger: TGAGGATAAATTCATCTTCCACAAGGATCTGTGCCA...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CCA 90 bp TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAGCATCACGAGTTTTaGAAATCAACTTTGGACCCT +
Preference number: 4 (lower is better)
Translates to: SHGHLHHVVKVLAVTVKPKHHEF*KSTLDP
Trigger: AGGGTCCAAAGTTGATTTCCAAAACTCGTGATGCTT...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR TCA 90 bp CATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCAAACATATATATGTCATaGCTTTTTCCCCATCCTGCA +
Preference number: 4 (lower is better)
Translates to: HLHHVVKVLAVTVKPKGSNIYMS*LFPHPA
Trigger: TGCAGGATGGGGAAAAAGTCATGACATATATATGTT...TGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR GCA 90 bp GTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCCATGCTCATTTAACATaGTTCCTTCTCTTAATTCCT +
Preference number: 4 (lower is better)
Translates to: VVKVLAVTVKPKGSHQRVHAHLT*FLLLIP
Trigger: AGGAATTAAGAGAAGGAAGCATGTTAAATGAGCATG...GACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR GCA 90 bp TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAATCACTGAACATACATaGTCATTTAACATGCTTCCT +
Preference number: 4 (lower is better)
Translates to: SHGHLHHVVKVLAVTVKPITEHT*SFNMLP
Trigger: AGGAAGCATGTTAAATGAGCATGTATGTTCAGTGAT...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CCA 90 bp TCGGCCATTCCCTCACCACAGCCGGACCATTTCTCCTCGCTGAGCTaGCAGCACGTGGAGGCAATGCTCACCATCTTCCCGGTGAGGTCG +
Preference number: 5 (lower is better)
Translates to: SAIPSPQPDHFSSLS*QHVEAMLTIFPVRS
Trigger: CGACCTCACCGGGAAGATGGTGAGCATTGCCTCCACGTGCTGCCAGCTCAGCGAGGAGAAATGGTCCGGCTGTGGTGAGGGAATGGCCGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS TCA 90 bp GGTGGGACAGAGGCCGGAGCAGTCTTCTTGCGTGCCAGCAGACACTaGTGTCTTTCCACTCCACTTTGGCTGCAGCAGCCTGAGAGTCCA +
Preference number: 5 (lower is better)
Translates to: GGTEAGAVFLRASRH*CLSTPLWLQQPESP
Trigger: TGGACTCTCAGGCTGCTGCAGCCAAAGTGGAGTGGAAAGACATCAGTGTCTGCTGGCACGCAAGAAGACTGCTCCGGCCTCTGTCCCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS GCA 90 bp CTGGTCCTGGGCTTTGCAGCACTTCTCCAAAAGGCCCGAGAAATCTaGAGTGACAGCCGCCAGCTGCTCCTCTGTCAGTTCAGGCTTTTG +
Preference number: 5 (lower is better)
Translates to: LVLGFAALLQKAREI*SDSRQLLLCQFRLL
Trigger: CAAAAGCCTGAACTGACAGAGGAGCAGCTGGCGGCTGTCACTGCAGATTTCTCGGGCCTTTTGGAGAAGTGCTGCAAAGCCCAGGACCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS TCA 90 bp GGAGGCAATGCTCACCATCTTCCCGGTGAGGTCGATCAGCTCTGCTaGGGTCAGCTGAGGGGCTTTCCTCGTGTAACCAATAAGGAACAG +
Preference number: 5 (lower is better)
Translates to: GGNAHHLPGEVDQLC*GQLRGFPRVTNKEQ
Trigger: CTGTTCCTTATTGGTTACACGAGGAAAGCCCCTCAGCTGACCTCAGCAGAGCTGATCGACCTCACCGGGAAGATGGTGAGCATTGCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS TCA 90 bp CCTGGGCTTTGCAGCACTTCTCCAAAAGGCCCGAGAAATCTGCAGTaGCAGCCGCCAGCTGCTCCTCTGTCAGTTCAGGCTTTTGCTTCA +
Preference number: 5 (lower is better)
Translates to: PGLCSTSPKGPRNLQ*QPPAAPLSVQAFAS
Trigger: TGAAGCAAAAGCCTGAACTGACAGAGGAGCAGCTGGCGGCTGTCACTGCAGATTTCTCGGGCCTTTTGGAGAAGTGCTGCAAAGCCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CCA 90 bp CTGTTTTCTTCATGTGCTTTGCAACTCTCGGCAGGTTCTGGAAACTaGAAGGGTGGGACAGAGGCCGGAGCAGTCTTCTTGCGTGCCAGC +
Preference number: 5 (lower is better)
Translates to: LFSSCALQLSAGSGN*KGGTEAGAVFLRAS
Trigger: GCTGGCACGCAAGAAGACTGCTCCGGCCTCTGTCCCACCCTTCCAGTTTCCAGAACCTGCCGAGAGTTGCAAAGCACATGAAGAAAACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CCA 90 bp CACTGCCCTGTTTTCTTCATGTGCTTTGCAACTCTCGGCAGGTTCTaGAAACTGGAAGGGTGGGACAGAGGCCGGAGCAGTCTTCTTGCG +
Preference number: 5 (lower is better)
Translates to: HCPVFFMCFATLGRF*KLEGWDRGRSSLLA
Trigger: CGCAAGAAGACTGCTCCGGCCTCTGTCCCACCCTTCCAGTTTCCAGAACCTGCCGAGAGTTGCAAAGCACATGAAGAAAACAGGGCAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS TCA 90 bp TCCTTGTTGTCAGCTTTGCAGCATGCCAGAACGACCTTGTCGTACTaGGCAGCCAAGGACAGAATGGCTGGGGCATACATGAAGGGGTTC +
Preference number: 5 (lower is better)
Translates to: SLLSALQHARTTLSY*AAKDRMAGAYMKGF
Trigger: GAACCCCTTCATGTATGCCCCAGCCATTCTGTCCTTGGCTGCTCAGTACGACAAGGTCGTTCTGGCATGCTGCAAAGCTGACAACAAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS GCA 90 bp TCTCTTTGTCTGGAAGCACTCCTCCTTGTTGTCAGCTTTGCAGCATaGCAGAACGACCTTGTCGTACTGAGCAGCCAAGGACAGAATGGC +
Preference number: 5 (lower is better)
Translates to: SLCLEALLLVVSFAA*QNDLVVLSSQGQNG
Trigger: GCCATTCTGTCCTTGGCTGCTCAGTACGACAAGGTCGTTCTGGCATGCTGCAAAGCTGACAACAAGGAGGAGTGCTTCCAGACAAAGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS GCA 90 bp CACTTCTCCAAAAGGCCCGAGAAATCTGCAGTGACAGCCGCCAGCTaGTCCTCTGTCAGTTCAGGCTTTTGCTTCACCAGGTTAATGAGA +
Preference number: 5 (lower is better)
Translates to: HFSKRPEKSAVTAAS*SSVSSGFCFTRLMR
Trigger: TCTCATTAACCTGGTGAAGCAAAAGCCTGAACTGACAGAGGAGCAGCTGGCGGCTGTCACTGCAGATTTCTCGGGCCTTTTGGAGAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS GCA 90 bp TCTGCAGTGACAGCCGCCAGCTGCTCCTCTGTCAGTTCAGGCTTTTaGTTCACCAGGTTAATGAGAAGCTCTTGTTTCATGGTCTGTAGG +
Preference number: 5 (lower is better)
Translates to: SAVTAASCSSVSSGF*FTRLMRSSCFMVCR
Trigger: CCTACAGACCATGAAACAAGAGCTTCTCATTAACCTGGTGAAGCAAAAGCCTGAACTGACAGAGGAGCAGCTGGCGGCTGTCACTGCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS GCA 90 bp CACTGGGAGGAATCTAACGTGGAAGCTATCCCAAACTCATTTTCGTaGAATGCTTTGGACGCAGCGAAATGTAGCAGGAGGATGAGGGAA +
Preference number: 5 (lower is better)
Translates to: HWEESNVEAIPNSFS*NALDAAKCSRRMRE
Trigger: TTCCCTCATCCTCCTGCTACATTTCGCTGCGTCCAAAGCATTGCACGAAAATGAGTTTGGGATAGCTTCCACGTTAGATTCCTCCCAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042755.7
ENSMUST00000200693.2
CDS CCA 90 bp CTGGTGATGCATAGCCTCCTGTTGGAATACGAAGAGTTGCAGCAGTaGCTGATACCAGAGTTCACAGGGCTTGCTTCATTCCTTATACAC +
Preference number: 5 (lower is better)
Translates to: LVMHSLLLEYEELQQ*LIPEFTGLASFLIH
Trigger: GTGTATAAGGAATGAAGCAAGCCCTGTGAACTCTGGTATCAGCCACTGCTGCAACTCTTCGTATTCCAACAGGAGGCTATGCATCACCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CAA 90 bp GTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCAACAGAGCGCAGCTTTGCTaGGACAGTGCCTGGCTCTCC +
Preference number: 5 (lower is better)
Translates to: VKVLAVTVKPKGSHQRVNRAQLC*DSAWLS
Trigger: GGAGAGCCAGGCACTGTCCAAGCAAAGCTGCGCTCT...GTTGACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CCA 90 bp AAGGTGATGGTAGCTATGCTAAGCACATTCTTCTCCGTCACGCACTaGGAGGAATCTAACGTGGAAGCTATCCCAAACTCATTTTCGTGC +
Preference number: 5 (lower is better)
Translates to: KVMVAMLSTFFSVTH*EESNVEAIPNSFSC
Trigger: GCACGAAAATGAGTTTGGGATAGCTTCCACGTTAGATTCCTCCCAGTGCGTGACGGAGAAGAATGTGCTTAGCATAGCTACCATCACCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042755.7
ENSMUST00000200693.2
CDS-3UTR CAA 90 bp GTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCAACTCCTGGTCCTGGGCTTaGCAGCACTTCTCCAAAAGG +
Preference number: 5 (lower is better)
Translates to: VKVLAVTVKPKGSHQRVNSWSWA*QHFSKR
Trigger: CCTTTTGGAGAAGTGCTGCAAAGCCCAGGACCAGGA...GTTGACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CAA 90 bp CATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCAAAGCACTCCTCCTTGTaGTCAGCTTTGCAGCATGCC +
Preference number: 5 (lower is better)
Translates to: HLHHVVKVLAVTVKPKGSKHSSL*SALQHA
Trigger: GGCATGCTGCAAAGCTGACAACAAGGAGGAGTGCTT...TGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS TCA 90 bp CTGCAGCAGCCTGAGAGTCCATACTTGTTAGAGAGTTCCGTCTCATaGCAAATTTCATCCAGAAACACAGATAGCTGGCTTTCTAAACAC +
Preference number: 5 (lower is better)
Translates to: LQQPESPYLLESSVS*QISSRNTDSWLSKH
Trigger: GTGTTTAGAAAGCCAGCTATCTGTGTTTCTGGATGAAATTTGTCATGAGACGGAACTCTCTAACAAGTATGGACTCTCAGGCTGCTGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS TCA 90 bp CTTGGATTTAGAGATAAGCCTTCAGGTTTGACGCCATTCTCTGCGTaGATTATGCAGAAGCCTAGTTGGATCATGGGTAATTTGCAGCAC +
Preference number: 5 (lower is better)
Translates to: LGFRDKPSGLTPFSA*IMQKPSWIMGNLQH
Trigger: GTGCTGCAAATTACCCATGATCCAACTAGGCTTCTGCATAATTCACGCAGAGAATGGCGTCAAACCTGAAGGCTTATCTCTAAATCCAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS TCA 90 bp TGTCTCCCAAAAACTGGCTTGGATTTAGAGATAAGCCTTCAGGTTTaGCGCCATTCTCTGCGTGAATTATGCAGAAGCCTAGTTGGATCA +
Preference number: 5 (lower is better)
Translates to: CLPKTGLDLEISLQV*RHSLRELCRSLVGS
Trigger: TGATCCAACTAGGCTTCTGCATAATTCACGCAGAGAATGGCGTCAAACCTGAAGGCTTATCTCTAAATCCAAGCCAGTTTTTGGGAGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CAA 90 bp GTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGTCTTGGAATACGAAGAGTaGCAGCAGTGGCTGATACCA +
Preference number: 5 (lower is better)
Translates to: VVKVLAVTVKPKGSHQRVLEYEE*QQWLIP
Trigger: TGGTATCAGCCACTGCTGCAACTCTTCGTATTCCAA...GACTCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CAA 90 bp TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCACCTGAGAGTCCATACTaGTTAGAGAGTTCCGTCTCA +
Preference number: 5 (lower is better)
Translates to: SHGHLHHVVKVLAVTVKPPESPY*LESSVS
Trigger: TGAGACGGAACTCTCTAACAAGTATGGACTCTCAGG...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CAA 90 bp CACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAACAGAGTTCACAGGGCTaGCTTCATTCCTTATACACA +
Preference number: 5 (lower is better)
Translates to: HHVVKVLAVTVKPKGSHQQSSQG*LHSLYT
Trigger: TGTGTATAAGGAATGAAGCAAGCCCTGTGAACTCTG...TTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CAA 90 bp GGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCGCTTGGCACAGATCCTaGTGGAAGATGAATTTATCC +
Preference number: 5 (lower is better)
Translates to: GHLHHVVKVLAVTVKPKGAWHRS*WKMNLS
Trigger: GGATAAATTCATCTTCCACAAGGATCTGTGCCAAGC...GCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CAA 90 bp CACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAATGTCAGTTCAGGCTTTaGCTTCACCAGGTTAATGAG +
Preference number: 5 (lower is better)
Translates to: HHVVKVLAVTVKPKGSHQCQFRL*LHQVNE
Trigger: CTCATTAACCTGGTGAAGCAAAAGCCTGAACTGACA...TTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CCA 90 bp CATCCAGGTAGATTTCCAGACTGGGAACACTTCTCCAATATTTCCTaGTACGTTTTAGCAATTCTTAGAATGACTGAGACAGGAAGGTTG +
Preference number: 5 (lower is better)
Translates to: HPGRFPDWEHFSNIS*YVLAILRMTETGRL
Trigger: CAACCTTCCTGTCTCAGTCATTCTAAGAATTGCTAAAACGTACCAGGAAATATTGGAGAAGTGTTCCCAGTCTGGAAATCTACCTGGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CAA 90 bp CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGAGGTTGGGGTGAGTTCTaGAGTATTCATGAAGAAAGC +
Preference number: 5 (lower is better)
Translates to: HVVKVLAVTVKPKGSHQRGWGEF*SIHEES
Trigger: GCTTTCTTCATGAATACTCAAGAACTCACCCCAACC...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CAA 90 bp CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGATGGATCATGGGTAATTaGCAGCACTCTGCTATTTTG +
Preference number: 5 (lower is better)
Translates to: HVVKVLAVTVKPKGSHQRWIMGN*QHSAIL
Trigger: CAAAATAGCAGAGTGCTGCAAATTACCCATGATCCA...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CAA 90 bp TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCACTCCCAAAAACTGGCTaGGATTTAGAGATAAGCCTT +
Preference number: 5 (lower is better)
Translates to: SHGHLHHVVKVLAVTVKPLPKTG*DLEISL
Trigger: AAGGCTTATCTCTAAATCCAAGCCAGTTTTTGGGAG...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CAA 90 bp TCACATGGACATCTTCACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGCATCACGAGTTTaGGAAATCAACTTTGGACCC +
Preference number: 5 (lower is better)
Translates to: SHGHLHHVVKVLAVTVKPKASRV*EINFGP
Trigger: GGGTCCAAAGTTGATTTCCAAAACTCGTGATGCTTT...TGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTGAAGATGTCCATGTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS GCA 90 bp TCTCTGCGTGAATTATGCAGAAGCCTAGTTGGATCATGGGTAATTTaGAGCACTCTGCTATTTTGCTTGACAGAATATTTTGTTGAGAAC +
Preference number: 5 (lower is better)
Translates to: SLRELCRSLVGSWVI*STLLFCLTEYFVEN
Trigger: GTTCTCAACAAAATATTCTGTCAAGCAAAATAGCAGAGTGCTGCAAATTACCCATGATCCAACTAGGCTTCTGCATAATTCACGCAGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CAA 90 bp CATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAAAGACTTCTCTTAATTCCTTaGCAATGGATGCTCTCTTTG +
Preference number: 5 (lower is better)
Translates to: HVVKVLAVTVKPKGSHQRLLLIP*QWMLSL
Trigger: CAAAGAGAGCATCCATTGCAAAGGAATTAAGAGAAG...TCTTTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS-3UTR CAA 90 bp CACCATGTGGTTAAAGTACTAGCAGTTACAGTTAAGCCAAAAGGCTCACACCAACAGCACTCTGCTATTTaGCTTGACAGAATATTTTGT +
Preference number: 5 (lower is better)
Translates to: HHVVKVLAVTVKPKGSHQQHSAI*LDRIFC
Trigger: ACAAAATATTCTGTCAAGCAAAATAGCAGAGTGCTG...TTGGTGTGAGCCTTTTGGCTTAACTGTAACTGCTAGTACTTTAACCACATGGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS TCA 72 bp GGCAGCACGTGGAGGCAATGCTCACCATCTTCCCGGTaGGGTCGATCAGCTCTGCTGAGGTCAGCTGAGGGG +
Preference number: 6 (lower is better)
Translates to: GSTWRQCSPSSR*GRSALLRSAEG
Trigger: CCCCTCAGCTGACCTCAGCAGAGCTGATCGACCTCACCGGGAAGATGGTGAGCATTGCCTCCACGTGCTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CCA 72 bp CCCTCACCACAGCCGGACCATTTCTCCTCGCTGAGCTaGCAGCACGTGGAGGCAATGCTCACCATCTTCCCG +
Preference number: 6 (lower is better)
Translates to: PSPQPDHFSSLS*QHVEAMLTIFP
Trigger: CGGGAAGATGGTGAGCATTGCCTCCACGTGCTGCCAGCTCAGCGAGGAGAAATGGTCCGGCTGTGGTGAGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS TCA 72 bp GAGGCCGGAGCAGTCTTCTTGCGTGCCAGCAGACACTaGTGTCTTTCCACTCCACTTTGGCTGCAGCAGCCT +
Preference number: 6 (lower is better)
Translates to: EAGAVFLRASRH*CLSTPLWLQQP
Trigger: AGGCTGCTGCAGCCAAAGTGGAGTGGAAAGACATCAGTGTCTGCTGGCACGCAAGAAGACTGCTCCGGCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS GCA 72 bp ACTGGAAGGGTGGGACAGAGGCCGGAGCAGTCTTCTTaGGTGCCAGCAGACACTGATGTCTTTCCACTCCAC +
Preference number: 6 (lower is better)
Translates to: TGRVGQRPEQSS*VPADTDVFPLH
Trigger: GTGGAGTGGAAAGACATCAGTGTCTGCTGGCACGCAAGAAGACTGCTCCGGCCTCTGTCCCACCCTTCCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS TCA 72 bp GCTCACCATCTTCCCGGTGAGGTCGATCAGCTCTGCTaGGGTCAGCTGAGGGGCTTTCCTCGTGTAACCAAT +
Preference number: 6 (lower is better)
Translates to: AHHLPGEVDQLC*GQLRGFPRVTN
Trigger: ATTGGTTACACGAGGAAAGCCCCTCAGCTGACCTCAGCAGAGCTGATCGACCTCACCGGGAAGATGGTGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS GCA 72 bp GAAGGGTGGGACAGAGGCCGGAGCAGTCTTCTTGCGTaGCAGCAGACACTGATGTCTTTCCACTCCACTTTG +
Preference number: 6 (lower is better)
Translates to: EGWDRGRSSLLA*QQTLMSFHSTL
Trigger: CAAAGTGGAGTGGAAAGACATCAGTGTCTGCTGGCACGCAAGAAGACTGCTCCGGCCTCTGTCCCACCCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS GCA 72 bp GGCTTTGCAGCACTTCTCCAAAAGGCCCGAGAAATCTaGAGTGACAGCCGCCAGCTGCTCCTCTGTCAGTTC +
Preference number: 6 (lower is better)
Translates to: GFAALLQKAREI*SDSRQLLLCQF
Trigger: GAACTGACAGAGGAGCAGCTGGCGGCTGTCACTGCAGATTTCTCGGGCCTTTTGGAGAAGTGCTGCAAAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CCA 72 bp TCATGTGCTTTGCAACTCTCGGCAGGTTCTGGAAACTaGAAGGGTGGGACAGAGGCCGGAGCAGTCTTCTTG +
Preference number: 6 (lower is better)
Translates to: SCALQLSAGSGN*KGGTEAGAVFL
Trigger: CAAGAAGACTGCTCCGGCCTCTGTCCCACCCTTCCAGTTTCCAGAACCTGCCGAGAGTTGCAAAGCACATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CCA 72 bp AGTCTCCTAAGGTCTGGTAGAGAGCGCAGCTTTGCTTaGACAGTGCCTGGCTCTCCTCGATGTGTTTCTGCA +
Preference number: 6 (lower is better)
Translates to: SLLRSGRERSFA*TVPGSPRCVSA
Trigger: TGCAGAAACACATCGAGGAGAGCCAGGCACTGTCCAAGCAAAGCTGCGCTCTCTACCAGACCTTAGGAGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CAA 72 bp CCCTCTTCTGTGAAACAGACTTCCTGGTCCTGGGCTTaGCAGCACTTCTCCAAAAGGCCCGAGAAATCTGCA +
Preference number: 6 (lower is better)
Translates to: PSSVKQTSWSWA*QHFSKRPEKSA
Trigger: TGCAGATTTCTCGGGCCTTTTGGAGAAGTGCTGCAAAGCCCAGGACCAGGAAGTCTGTTTCACAGAAGAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CAA 90 bp AACTTTGGACCCTCTTCTGTGAAACAGACTTCCTGGTCCTGGGCTTaGCAGCACTTCTCCAAAAGGCCCGAGAAATCTGCAGTGACAGCC +
Preference number: 6 (lower is better)
Translates to: NFGPSSVKQTSWSWA*QHFSKRPEKSAVTA
Trigger: GGCTGTCACTGCAGATTTCTCGGGCCTTTTGGAGAAGTGCTGCAAAGCCCAGGACCAGGAAGTCTGTTTCACAGAAGAGGGTCCAAAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CAA 72 bp ATGGATGCTCTCTTTGTCTGGAAGCACTCCTCCTTGTaGTCAGCTTTGCAGCATGCCAGAACGACCTTGTCG +
Preference number: 6 (lower is better)
Translates to: MDALFVWKHSSL*SALQHARTTLS
Trigger: CGACAAGGTCGTTCTGGCATGCTGCAAAGCTGACAACAAGGAGGAGTGCTTCCAGACAAAGAGAGCATCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CAA 72 bp GCAATGGATGCTCTCTTTGTCTGGAAGCACTCCTCCTaGTTGTCAGCTTTGCAGCATGCCAGAACGACCTTG +
Preference number: 6 (lower is better)
Translates to: AMDALFVWKHSS*LSALQHARTTL
Trigger: CAAGGTCGTTCTGGCATGCTGCAAAGCTGACAACAAGGAGGAGTGCTTCCAGACAAAGAGAGCATCCATTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CAA 90 bp GAATCTAACGTGGAAGCTATCCCAAACTCATTTTCGTGCAATGCTTaGGACGCAGCGAAATGTAGCAGGAGGATGAGGGAAGCGGGTGTG +
Preference number: 6 (lower is better)
Translates to: ESNVEAIPNSFSCNA*DAAKCSRRMREAGV
Trigger: CACACCCGCTTCCCTCATCCTCCTGCTACATTTCGCTGCGTCCAAAGCATTGCACGAAAATGAGTTTGGGATAGCTTCCACGTTAGATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042755.7
ENSMUST00000200693.2
CDS TCA 72 bp CAGGGCTTGCTTCATTCCTTATACACAAATGTCCAATaGAAATGTCGGCCATTCCCTCACCACAGCCGGACC +
Preference number: 6 (lower is better)
Translates to: QGLLHSLYTNVQ*KCRPFPHHSRT
Trigger: GGTCCGGCTGTGGTGAGGGAATGGCCGACATTTTCATTGGACATTTGTGTATAAGGAATGAAGCAAGCCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS TCA 72 bp GCCTCCTGTTGGAATACGAAGAGTTGCAGCAGTGGCTaGTACCAGAGTTCACAGGGCTTGCTTCATTCCTTA +
Preference number: 6 (lower is better)
Translates to: ASCWNTKSCSSG*YQSSQGLLHSL
Trigger: TAAGGAATGAAGCAAGCCCTGTGAACTCTGGTATCAGCCACTGCTGCAACTCTTCGTATTCCAACAGGAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS GCA 72 bp ACAGCCGCCAGCTGCTCCTCTGTCAGTTCAGGCTTTTaGTTCACCAGGTTAATGAGAAGCTCTTGTTTCATG +
Preference number: 6 (lower is better)
Translates to: TAASCSSVSSGF*FTRLMRSSCFM
Trigger: CATGAAACAAGAGCTTCTCATTAACCTGGTGAAGCAAAAGCCTGAACTGACAGAGGAGCAGCTGGCGGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CAA 72 bp GACAGCCGCCAGCTGCTCCTCTGTCAGTTCAGGCTTTaGCTTCACCAGGTTAATGAGAAGCTCTTGTTTCAT +
Preference number: 6 (lower is better)
Translates to: DSRQLLLCQFRL*LHQVNEKLLFH
Trigger: ATGAAACAAGAGCTTCTCATTAACCTGGTGAAGCAAAAGCCTGAACTGACAGAGGAGCAGCTGGCGGCTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CAA 90 bp CTCAGAAAACTGGTGATGCATAGCCTCCTGTTGGAATACGAAGAGTaGCAGCAGTGGCTGATACCAGAGTTCACAGGGCTTGCTTCATTC +
Preference number: 6 (lower is better)
Translates to: LRKLVMHSLLLEYEE*QQWLIPEFTGLASF
Trigger: GAATGAAGCAAGCCCTGTGAACTCTGGTATCAGCCACTGCTGCAACTCTTCGTATTCCAACAGGAGGCTATGCATCACCAGTTTTCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS TCA 72 bp CAGAATGGCTGGGGCATACATGAAGGGGTTCCTCCTTaGCACTTCATAGATGAACCTGTTCATGAACACTGC +
Preference number: 6 (lower is better)
Translates to: QNGWGIHEGVPP*HFIDEPVHEHC
Trigger: GCAGTGTTCATGAACAGGTTCATCTATGAAGTGTCAAGGAGGAACCCCTTCATGTATGCCCCAGCCATTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS TCA 72 bp CACGAGTTTTGGAAATCAACTTTGGACCCTCTTCTGTaGAACAGACTTCCTGGTCCTGGGCTTTGCAGCACT +
Preference number: 6 (lower is better)
Translates to: HEFWKSTLDPLL*NRLPGPGLCST
Trigger: AGTGCTGCAAAGCCCAGGACCAGGAAGTCTGTTTCACAGAAGAGGGTCCAAAGTTGATTTCCAAAACTCGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CAA 72 bp CTGTTCATGAACACTGCCCTGTTTTCTTCATGTGCTTaGCAACTCTCGGCAGGTTCTGGAAACTGGAAGGGT +
Preference number: 6 (lower is better)
Translates to: LFMNTALFSSCA*QLSAGSGNWKG
Trigger: ACCCTTCCAGTTTCCAGAACCTGCCGAGAGTTGCAAAGCACATGAAGAAAACAGGGCAGTGTTCATGAACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CAA 72 bp TCATCCCTCAGAAAACTGGTGATGCATAGCCTCCTGTaGGAATACGAAGAGTTGCAGCAGTGGCTGATACCA +
Preference number: 6 (lower is better)
Translates to: SSLRKLVMHSLL*EYEELQQWLIP
Trigger: TGGTATCAGCCACTGCTGCAACTCTTCGTATTCCAACAGGAGGCTATGCATCACCAGTTTTCTGAGGGATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CAA 90 bp TCGCCAGAGTTTTTCTTCATTGCAGCCAACACATCGCTAGTCATTTaGTTCACTTCCTCCTCGGTGGCTTCCGGAACAAACTGGGTAAAG +
Preference number: 6 (lower is better)
Translates to: SPEFFFIAANTSLVI*FTSSSVASGTNWVK
Trigger: CTTTACCCAGTTTGTTCCGGAAGCCACCGAGGAGGAAGTGAACAAAATGACTAGCGATGTGTTGGCTGCAATGAAGAAAAACTCTGGCGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042755.7
ENSMUST00000200693.2
CDS GCA 72 bp GAATCTAACGTGGAAGCTATCCCAAACTCATTTTCGTaGAATGCTTTGGACGCAGCGAAATGTAGCAGGAGG +
Preference number: 6 (lower is better)
Translates to: ESNVEAIPNSFS*NALDAAKCSRR
Trigger: CCTCCTGCTACATTTCGCTGCGTCCAAAGCATTGCACGAAAATGAGTTTGGGATAGCTTCCACGTTAGATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042755.7
ENSMUST00000200693.2
CDS GCA 72 bp GAACCTGTTCATGAACACTGCCCTGTTTTCTTCATGTaGTTTGCAACTCTCGGCAGGTTCTGGAAACTGGAA +
Preference number: 6 (lower is better)
Translates to: EPVHEHCPVFFM*FATLGRFWKLE
Trigger: TTCCAGTTTCCAGAACCTGCCGAGAGTTGCAAAGCACATGAAGAAAACAGGGCAGTGTTCATGAACAGGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CAA 72 bp TTTTTCTTCATTGCAGCCAACACATCGCTAGTCATTTaGTTCACTTCCTCCTCGGTGGCTTCCGGAACAAAC +
Preference number: 6 (lower is better)
Translates to: FFFIAANTSLVI*FTSSSVASGTN
Trigger: GTTTGTTCCGGAAGCCACCGAGGAGGAAGTGAACAAAATGACTAGCGATGTGTTGGCTGCAATGAAGAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042755.7
ENSMUST00000200693.2
CDS CAA 90 bp TTAACATGCTTCCTTCTCTTAATTCCTTTGCAATGGATGCTCTCTTaGTCTGGAAGCACTCCTCCTTGTTGTCAGCTTTGCAGCATGCCA +
Preference number: 6 (lower is better)
Translates to: LTCFLLLIPLQWMLS*SGSTPPCCQLCSMP
Trigger: TGGCATGCTGCAAAGCTGACAACAAGGAGGAGTGCTTCCAGACAAAGAGAGCATCCATTGCAAAGGAATTAAGAGAAGGAAGCATGTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS TCA 72 bp TCGATGTGTTTCTGCAATTCTTCTTCCAGATTGTCCTaGCATCCAGGTAGATTTCCAGACTGGGAACACTTC +
Preference number: 6 (lower is better)
Translates to: SMCFCNSSSRLS*HPGRFPDWEHF
Trigger: GAAGTGTTCCCAGTCTGGAAATCTACCTGGATGTCAGGACAATCTGGAAGAAGAATTGCAGAAACACATCGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CAA 72 bp TTCCTTCTCTTAATTCCTTTGCAATGGATGCTCTCTTaGTCTGGAAGCACTCCTCCTTGTTGTCAGCTTTGC +
Preference number: 6 (lower is better)
Translates to: FLLLIPLQWMLS*SGSTPPCCQLC
Trigger: GCAAAGCTGACAACAAGGAGGAGTGCTTCCAGACAAAGAGAGCATCCATTGCAAAGGAATTAAGAGAAGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS TCA 72 bp AAAACTGGCTTGGATTTAGAGATAAGCCTTCAGGTTTaGCGCCATTCTCTGCGTGAATTATGCAGAAGCCTA +
Preference number: 6 (lower is better)
Translates to: KTGLDLEISLQV*RHSLRELCRSL
Trigger: TAGGCTTCTGCATAATTCACGCAGAGAATGGCGTCAAACCTGAAGGCTTATCTCTAAATCCAAGCCAGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS GCA 72 bp GTTGCAGCAGTGGCTGATACCAGAGTTCACAGGGCTTaGTTCATTCCTTATACACAAATGTCCAATGAAAAT +
Preference number: 6 (lower is better)
Translates to: VAAVADTRVHRA*FIPYTQMSNEN
Trigger: ATTTTCATTGGACATTTGTGTATAAGGAATGAAGCAAGCCCTGTGAACTCTGGTATCAGCCACTGCTGCAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS GCA 72 bp GTTGGATCATGGGTAATTTGCAGCACTCTGCTATTTTaGTTGACAGAATATTTTGTTGAGAACATATATATG +
Preference number: 6 (lower is better)
Translates to: VGSWVICSTLLF*LTEYFVENIYM
Trigger: CATATATATGTTCTCAACAAAATATTCTGTCAAGCAAAATAGCAGAGTGCTGCAAATTACCCATGATCCAAC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7
CDS CAA 72 bp GGATCATGGGTAATTTGCAGCACTCTGCTATTTTGCTaGACAGAATATTTTGTTGAGAACATATATATGTCA +
Preference number: 6 (lower is better)
Translates to: GSWVICSTLLFC*TEYFVENIYMS
Trigger: TGACATATATATGTTCTCAACAAAATATTCTGTCAAGCAAAATAGCAGAGTGCTGCAAATTACCCATGATCC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042755.7