RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AFF4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049470

Ensembl transcript IDs: ENSMUST00000060945.12, ENSMUST00000152616.3, ENSMUST00000153821.2

Found 332 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAGCCCAGAGCTGGAAAGCAGAGCCCCGAACTGCAGCAGCGGGGCTaGAAGCACAGGGAGAGGGTGCTTGCTCTACTTCTAAGGCCTCCC +
Preference number: 1 (lower is better)
Translates to: QPRAGKQSPELQQRG*KHRERVLALLLRPP
Trigger: GGGAGGCCTTAGAAGTAGAGCAAGCACCCTCTCCCTGTGCTTTCAGCCCCGCTGCTGCAGTTCGGGGCTCTGCTTTCCAGCTCTGGGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 90 bp GAATGCGCTGCACACAGCCCAGAGCTGGAAAGCAGAGCCCCGAACTaGAGCAGCGGGGCTGAAAGCACAGGGAGAGGGTGCTTGCTCTAC +
Preference number: 1 (lower is better)
Translates to: ECAAHSPELESRAPN*SSGAESTGRGCLLY
Trigger: GTAGAGCAAGCACCCTCTCCCTGTGCTTTCAGCCCCGCTGCTGCAGTTCGGGGCTCTGCTTTCCAGCTCTGGGCTGTGTGCAGCGCATTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 90 bp GCCCAGCCTCTCCCAGGCAGGACTACTGTGACAGCTGCATCACTGTaGTCCTGTGATCACCTGTCCAGAGTCCAATGGTGCATGCTGCTG +
Preference number: 1 (lower is better)
Translates to: AQPLPGRTTVTAASL*SCDHLSRVQWCMLL
Trigger: CAGCAGCATGCACCATTGGACTCTGGACAGGTGATCACAGGATCACAGTGATGCAGCTGTCACAGTAGTCCTGCCTGGGAGAGGCTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 90 bp TCTCCCAGGCAGGACTACTGTGACAGCTGCATCACTGTGATCCTGTaGTCACCTGTCCAGAGTCCAATGGTGCATGCTGCTGCCTCCTGC +
Preference number: 1 (lower is better)
Translates to: SPRQDYCDSCITVIL*SPVQSPMVHAAASC
Trigger: GCAGGAGGCAGCAGCATGCACCATTGGACTCTGGACAGGTGATCACAGGATCACAGTGATGCAGCTGTCACAGTAGTCCTGCCTGGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 90 bp CGGGCAACTGTAGTCACAGACAGCTGTGAGCCACCATATGGTTGCTaGGACTTGAACCTGGGTCATCTGGAAGTGCAGGCAGTGGCCCTT +
Preference number: 1 (lower is better)
Translates to: RATVVTDSCEPPYGC*DLNLGHLEVQAVAL
Trigger: AAGGGCCACTGCCTGCACTTCCAGATGACCCAGGTTCAAGTCTCAGCAACCATATGGTGGCTCACAGCTGTCTGTGACTACAGTTGCCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 90 bp ACTGAGCAAGGAAAGGGCTGGGTGTTCTCCAGCCAGAATGGGACATaGGCTAGGCTGTGTAATCTTGAATGCATGGAGGGGAGTGCTCCC +
Preference number: 1 (lower is better)
Translates to: TEQGKGWVFSSQNGT*ARLCNLECMEGSAP
Trigger: GGGAGCACTCCCCTCCATGCATTCAAGATTACACAGCCTAGCCCATGTCCCATTCTGGCTGGAGAACACCCAGCCCTTTCCTTGCTCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 90 bp CCCCACCTCTACCCTCACCCATGTACTGTTGAATGCTCATGTCAGTaGTGTGCCAGGTGTGAGCATAAAGGGGACACCTCTGGATCAGCA +
Preference number: 1 (lower is better)
Translates to: PHLYPHPCTVECSCQ*CARCEHKGDTSGSA
Trigger: TGCTGATCCAGAGGTGTCCCCTTTATGCTCACACCTGGCACATCACTGACATGAGCATTCAACAGTACATGGGTGAGGGTAGAGGTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 90 bp GCTCCAGGCAGTGCTTGTATTCCTGACAAGAGCCTCTGTAGGCCCTaGCTACACAATGCAAGCTCACTCGATAACCGTCAACGTACCAAA +
Preference number: 1 (lower is better)
Translates to: APGSACIPDKSLCRP*LHNASSLDNRQRTK
Trigger: TTTGGTACGTTGACGGTTATCGAGTGAGCTTGCATTGTGTAGCCAGGGCCTACAGAGGCTCTTGTCAGGAATACAAGCACTGCCTGGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 90 bp ATCTTAAAGCAGCACCATGAACACGTAGGAAACTCTGCTTTAGCATaGCGTCAGAGGCGCACTAGAATGCGCTGCACACAGCCCAGAGCT +
Preference number: 1 (lower is better)
Translates to: ILKQHHEHVGNSALA*RQRRTRMRCTQPRA
Trigger: AGCTCTGGGCTGTGTGCAGCGCATTCTAGTGCGCCTCTGACGTCATGCTAAAGCAGAGTTTCCTACGTGTTCATGGTGCTGCTTTAAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 90 bp AGTGAGAGAGAAGAGGCAAGGACAGGACACACAGCTGTTAGACCATaGAGGTTACTAGCACAAGAGAGGAACCGATGGCCTCTGAAGAAG +
Preference number: 1 (lower is better)
Translates to: SEREEARTGHTAVRP*RLLAQERNRWPLKK
Trigger: CTTCTTCAGAGGCCATCGGTTCCTCTCTTGTGCTAGTAACCTCCATGGTCTAACAGCTGTGTGTCCTGTCCTTGCCTCTTCTCTCTCACT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 90 bp GAGCATAAAGGGGACACCTCTGGATCAGCAACAAGCTCAACTATATaGACACCATGGCACTGGTGTGAAAGGCAGCACTTCCAAGTCGAC +
Preference number: 1 (lower is better)
Translates to: EHKGDTSGSATSSTI*TPWHWCERQHFQVD
Trigger: GTCGACTTGGAAGTGCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGATCCAGAGGTGTCCCCTTTATGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 90 bp CATACCCTCATACCTAGAAGAGTGTACAGCATCCCCCTTCTCAATTaGGCTAGGCATCACCCCACGGAGCTATTCCTGGTTGCACTAGAA +
Preference number: 1 (lower is better)
Translates to: HTLIPRRVYSIPLLN*ARHHPTELFLVALE
Trigger: TTCTAGTGCAACCAGGAATAGCTCCGTGGGGTGATGCCTAGCTCAATTGAGAAGGGGGATGCTGTACACTCTTCTAGGTATGAGGGTATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 90 bp TCAGAAACAGGTGGTGAAGGAGTCAGAGAGGATTTGCGACACTGCTaGGTGAAGGTTGCTATCCCCTCTTCCTCCTTTCCATTCAAGTCT +
Preference number: 1 (lower is better)
Translates to: SETGGEGVREDLRHC*VKVAIPSSSFPFKS
Trigger: AGACTTGAATGGAAAGGAGGAAGAGGGGATAGCAACCTTCACGCAGCAGTGTCGCAAATCCTCTCTGACTCCTTCACCACCTGTTTCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 90 bp TCTTCAGAAACAGGTGGTGAAGGAGTCAGAGAGGATTTGCGACACTaGTGCGTGAAGGTTGCTATCCCCTCTTCCTCCTTTCCATTCAAG +
Preference number: 1 (lower is better)
Translates to: SSETGGEGVREDLRH*CVKVAIPSSSFPFK
Trigger: CTTGAATGGAAAGGAGGAAGAGGGGATAGCAACCTTCACGCAGCAGTGTCGCAAATCCTCTCTGACTCCTTCACCACCTGTTTCTGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 90 bp ATAACTTCTTGCCCAGAAAAAGGTGTCACTGAGCAAGGAAAGGGCTaGGTGTTCTCCAGCCAGAATGGGACATGGGCTAGGCTGTGTAAT +
Preference number: 1 (lower is better)
Translates to: ITSCPEKGVTEQGKG*VFSSQNGTWARLCN
Trigger: ATTACACAGCCTAGCCCATGTCCCATTCTGGCTGGAGAACACCCAGCCCTTTCCTTGCTCAGTGACACCTTTTTCTGGGCAAGAAGTTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 90 bp GCTCATCTGAGAGCTTTCTCCACGTTTAAAGATGATGATTCCTGCTaGGCTGATCAATGGCAGCAAGGAGAGAGGCACAGGCAGACATTC +
Preference number: 1 (lower is better)
Translates to: AHLRAFSTFKDDDSC*ADQWQQGERHRQTF
Trigger: GAATGTCTGCCTGTGCCTCTCTCCTTGCTGCCATTGATCAGCTCAGCAGGAATCATCATCTTTAAACGTGGAGAAAGCTCTCAGATGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 90 bp CAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGCTCATCTaGGAGCTTTCTCCACGTTTAAAGATGATGATTCCTGCTGAGCTG +
Preference number: 1 (lower is better)
Translates to: QVSLGLLGGSLSTLI*ELSPRLKMMIPAEL
Trigger: CAGCTCAGCAGGAATCATCATCTTTAAACGTGGAGAAAGCTCTCAGATGAGCGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 90 bp TTCTGTAACCAAAAACTGAGATCTGTGCTGGCGGGGCCAGACCTTTaGAGAGTCAGACTGAACCCTAAGACACAAAGAGCAACTACACAA +
Preference number: 1 (lower is better)
Translates to: FCNQKLRSVLAGPDL*RVRLNPKTQRATTQ
Trigger: TTGTGTAGTTGCTCTTTGTGTCTTAGGGTTCAGTCTGACTCTGCAAAGGTCTGGCCCCGCCAGCACAGATCTCAGTTTTTGGTTACAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 90 bp AAAAGAAGTATAGAGGAAGAGAGACATCCTCGCCCTTCACTGCTATaGGCACCTTGCGGGAACAGTAGTTTGATAAGGAACTGTTACAGA +
Preference number: 1 (lower is better)
Translates to: KRSIEEERHPRPSLL*APCGNSSLIRNCYR
Trigger: TCTGTAACAGTTCCTTATCAAACTACTGTTCCCGCAAGGTGCGCATAGCAGTGAAGGGCGAGGATGTCTCTCTTCCTCTATACTTCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 90 bp AAAACAATAACAGCTACTCTAAAGCCACAAGTGTGTCATTCAAAGTaGAGCCCAGGTGCCTGTAAATCCCTAGTGCAAGAGCTTCCCAGA +
Preference number: 1 (lower is better)
Translates to: KTITATLKPQVCHSK*SPGACKSLVQELPR
Trigger: TCTGGGAAGCTCTTGCACTAGGGATTTACAGGCACCTGGGCTGCACTTTGAATGACACACTTGTGGCTTTAGAGTAGCTGTTATTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 90 bp TCTTACTACACTTTGCTTTCTCCCAGGGTCTCTCTGTGTAGAGCATaGTGGTCTCAAACTGACAGTCCAAGTGCTAGAATTAAAGCATGC +
Preference number: 1 (lower is better)
Translates to: SYYTLLSPRVSLCRA*WSQTDSPSARIKAC
Trigger: GCATGCTTTAATTCTAGCACTTGGACTGTCAGTTTGAGACCAGCATGCTCTACACAGAGAGACCCTGGGAGAAAGCAAAGTGTAGTAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 90 bp GTAATTAACACGAGTTCTGCAGAATGGCATCCTCTTACTACACTTTaGTTTCTCCCAGGGTCTCTCTGTGTAGAGCATGCTGGTCTCAAA +
Preference number: 1 (lower is better)
Translates to: VINTSSAEWHPLTTL*FLPGSLCVEHAGLK
Trigger: TTTGAGACCAGCATGCTCTACACAGAGAGACCCTGGGAGAAAGCAAAGTGTAGTAAGAGGATGCCATTCTGCAGAACTCGTGTTAATTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 90 bp TACTACACTTTGCTTTCTCCCAGGGTCTCTCTGTGTAGAGCATGCTaGTCTCAAACTGACAGTCCAAGTGCTAGAATTAAAGCATGCACT +
Preference number: 1 (lower is better)
Translates to: YYTLLSPRVSLCRAC*SQTDSPSARIKACT
Trigger: AGTGCATGCTTTAATTCTAGCACTTGGACTGTCAGTTTGAGACCAGCATGCTCTACACAGAGAGACCCTGGGAGAAAGCAAAGTGTAGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 90 bp CAAGAACTGACAGTTTTAAAGGGAAAACATCTTAAAGCAGCACCATaGACACGTAGGAAACTCTGCTTTAGCATGACGTCAGAGGCGCAC +
Preference number: 1 (lower is better)
Translates to: QELTVLKGKHLKAAP*TRRKLCFSMTSEAH
Trigger: GTGCGCCTCTGACGTCATGCTAAAGCAGAGTTTCCTACGTGTTCATGGTGCTGCTTTAAGATGTTTTCCCTTTAAAACTGTCAGTTCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 90 bp GTATGGGAAAGGTACATTTACAAATGTGACCGCTGGCCTAGTCAGTaGGTCTTCCCAGACCTTCTCAGTATTTTTCCTACTGATTTTACT +
Preference number: 1 (lower is better)
Translates to: VWERYIYKCDRWPSQ*VFPDLLSIFPTDFT
Trigger: AGTAAAATCAGTAGGAAAAATACTGAGAAGGTCTGGGAAGACGCACTGACTAGGCCAGCGGTCACATTTGTAAATGTACCTTTCCCATAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 90 bp TTAGTTAACCATGGGGTTCATGTAATTAACACGAGTTCTGCAGAATaGCATCCTCTTACTACACTTTGCTTTCTCCCAGGGTCTCTCTGT +
Preference number: 1 (lower is better)
Translates to: LVNHGVHVINTSSAE*HPLTTLCFLPGSLC
Trigger: ACAGAGAGACCCTGGGAGAAAGCAAAGTGTAGTAAGAGGATGCCATTCTGCAGAACTCGTGTTAATTACATGAACCCCATGGTTAACTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 90 bp AAAACAGCAACTGTGGACGCATGCACACATTACTCTGAATTGCTTTaGCAGTGGAGAATTAAATCAGTAGTGGTCAACCTTCTCCCTTCA +
Preference number: 1 (lower is better)
Translates to: KTATVDACTHYSELL*QWRIKSVVVNLLPS
Trigger: TGAAGGGAGAAGGTTGACCACTACTGATTTAATTCTCCACTGTCAAAGCAATTCAGAGTAATGTGTGCATGCGTCCACAGTTGCTGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 90 bp AACCAAAGAGGAGAAAACCATTCCTCATTCTTAGTGTCGACTAGGTaGTGTGTTATGGCAGTTTTCCTTTGTGATGTGACACAGTGTTGT +
Preference number: 1 (lower is better)
Translates to: NQRGENHSSFLVSTR*CVMAVFLCDVTQCC
Trigger: ACAACACTGTGTCACATCACAAAGGAAAACTGCCATAACACACCACCTAGTCGACACTAAGAATGAGGAATGGTTTTCTCCTCTTTGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 90 bp ACACCATTCCACCCACCTAAAACAGTCATCCTCAGTAGATGTCCTTaGGACCCAGACACCTTACAGACTCCTATAAATCAAAATATACAA +
Preference number: 1 (lower is better)
Translates to: TPFHPPKTVILSRCP*DPDTLQTPINQNIQ
Trigger: TTGTATATTTTGATTTATAGGAGTCTGTAAGGTGTCTGGGTCCCAAGGACATCTACTGAGGATGACTGTTTTAGGTGGGTGGAATGGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 90 bp CTCCATTTCTGCACCCATGCAGAATGCCGTCTTCTCATGTTTAAATaGCTTTTCACATGTGGAAGAGCATCCTTAATACCAAGCATAAAT +
Preference number: 1 (lower is better)
Translates to: LHFCTHAECRLLMFK*LFTCGRASLIPSIN
Trigger: ATTTATGCTTGGTATTAAGGATGCTCTTCCACATGTGAAAAGTCATTTAAACATGAGAAGACGGCATTCTGCATGGGTGCAGAAATGGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CAA 90 bp CTAACTGTGCTTACCAACCTAGTGTCTGGCCCTCAAGTGGGGCCTTaGCAGGCCCTGCCAATTGAGCCAGGGCTGTTGGCTAGCCCCACC +
Preference number: 2 (lower is better)
Translates to: LTVLTNLVSGPQVGP*QALPIEPGLLASPT
Trigger: GGTGGGGCTAGCCAACAGCCCTGGCTCAATTGGCAGGGCCTGCAAAGGCCCCACTTGAGGGCCAGACACTAGGTTGGTAAGCACAGTTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR GCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGAGAGGCGCACTAGAATaGGCTGCACACAGCCCAGAG +
Preference number: 2 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTRGALE*AAHSPE
Trigger: CTCTGGGCTGTGTGCAGCGCATTCTAGTGCGCCTCT...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR GCA 90 bp GATCAGCAACAAGCTCAACTATATGGACACCATGGCACTGGTGTGAAAGGCAGCTCCAGAGTCCAATGGTaGATGCTGCTGCCTCCTGCC +
Preference number: 2 (lower is better)
Translates to: DQQQAQLYGHHGTGVKGSSRVQW*MLLPPA
Trigger: GGCAGGAGGCAGCAGCATGCACCATTGGACTCTGGA...GCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CCA 90 bp GATCAGCAACAAGCTCAACTATATGGACACCATGGCACTGGTGTGAAAGGCAGCCACACAGCCCAGAGCTaGAAAGCAGAGCCCCGAACT +
Preference number: 2 (lower is better)
Translates to: DQQQAQLYGHHGTGVKGSHTAQS*KAEPRT
Trigger: AGTTCGGGGCTCTGCTTTCCAGCTCTGGGCTGTGTG...GCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CAA 90 bp CATCCTCGCCCTTCACTGCTATGCGCACCTTGCGGGAACAGTAGTTaGATAAGGAACTGTTACAGAGCTGGCTTCCTAAGCCCTGTCTCT +
Preference number: 2 (lower is better)
Translates to: HPRPSLLCAPCGNSS*IRNCYRAGFLSPVS
Trigger: AGAGACAGGGCTTAGGAAGCCAGCTCTGTAACAGTTCCTTATCAAACTACTGTTCCCGCAAGGTGCGCATAGCAGTGAAGGGCGAGGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CAA 90 bp ATGGGTCTCAGCATCTCAGGTTCTCTATCTAGCAAAGGATGGCCTTaGCCTCAGGGTATGCACCCGCACTCCTGGCCTTCTCTAACCTTA +
Preference number: 2 (lower is better)
Translates to: MGLSISGSLSSKGWP*PQGMHPHSWPSLTL
Trigger: TAAGGTTAGAGAAGGCCAGGAGTGCGGGTGCATACCCTGAGGCAAAGGCCATCCTTTGCTAGATAGAGAACCTGAGATGCTGAGACCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CAA 90 bp CTCCTGGCCTTCTCTAACCTTAAACATGTGTTCCTCCTCCCTGGCTaGGTTTTAGGGTCTGAAAAGTCGCAGCTGAATGCCTCCACTGGA +
Preference number: 2 (lower is better)
Translates to: LLAFSNLKHVFLLPG*VLGSEKSQLNASTG
Trigger: TCCAGTGGAGGCATTCAGCTGCGACTTTTCAGACCCTAAAACCAAGCCAGGGAGGAGGAACACATGTTTAAGGTTAGAGAAGGCCAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR GCA 90 bp CTTTCTCCCAGGGTCTCTCTGTGTAGAGCATGCTGGTCTCAAACTGACAGTCCACTGTGTAATCTTGAATaGATGGAGGGGAGTGCTCCC +
Preference number: 2 (lower is better)
Translates to: LSPRVSLCRACWSQTDSPLCNLE*MEGSAP
Trigger: GGGAGCACTCCCCTCCATGCATTCAAGATTACACAG...TGGACTGTCAGTTTGAGACCAGCATGCTCTACACAGAGAGACCCTGGGAGAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CCA 90 bp ACCGCTGGCCTAGTCAGTGCGTCTTCCCAGACCTTCTCAGTATTTTTCCTACTGGTAATCTTGAATGCATaGAGGGGAGTGCTCCCACAG +
Preference number: 2 (lower is better)
Translates to: TAGLVSASSQTFSVFFLLVILNA*RGVLPQ
Trigger: CTGTGGGAGCACTCCCCTCCATGCATTCAAGATTAC...CAGTAGGAAAAATACTGAGAAGGTCTGGGAAGACGCACTGACTAGGCCAGCGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR TCA 90 bp ACCGCTGGCCTAGTCAGTGCGTCTTCCCAGACCTTCTCAGTATTTTTCCTACTGCTTAAAGCAGCACCATaGACACGTAGGAAACTCTGC +
Preference number: 2 (lower is better)
Translates to: TAGLVSASSQTFSVFFLLLKAAP*TRRKLC
Trigger: GCAGAGTTTCCTACGTGTTCATGGTGCTGCTTTAAG...CAGTAGGAAAAATACTGAGAAGGTCTGGGAAGACGCACTGACTAGGCCAGCGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR TCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGAGAAAAAGGTGTCACTaGGCAAGGAAAGGGCTGGGT +
Preference number: 2 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTRKRCH*ARKGLG
Trigger: ACCCAGCCCTTTCCTTGCTCAGTGACACCTTTTTCT...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CCA 90 bp GATCAGCAACAAGCTCAACTATATGGACACCATGGCACTGGTGTGAAAGGCAGCCTCAGTAGATGTCCTTaGGACCCAGACACCTTACAG +
Preference number: 2 (lower is better)
Translates to: DQQQAQLYGHHGTGVKGSLSRCP*DPDTLQ
Trigger: CTGTAAGGTGTCTGGGTCCCAAGGACATCTACTGAG...GCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CAA 90 bp AGTTCACTATCTTCAGAAACAGGTGGTGAAGGAGTCAGAGAGGATTaGCGACACTGCTGCGTGAAGGTTGCTATCCCCTCTTCCTCCTTT +
Preference number: 2 (lower is better)
Translates to: SSLSSETGGEGVRED*RHCCVKVAIPSSSF
Trigger: AAAGGAGGAAGAGGGGATAGCAACCTTCACGCAGCAGTGTCGCAAATCCTCTCTGACTCCTTCACCACCTGTTTCTGAAGATAGTGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR TCA 90 bp GATCAGCAACAAGCTCAACTATATGGACACCATGGCACTGGTGTGAAAGGCAGCTCAAGCTCCAGTTCCTaGACTGTCAGATCTGAGCAT +
Preference number: 2 (lower is better)
Translates to: DQQQAQLYGHHGTGVKGSSSSSS*TVRSEH
Trigger: ATGCTCAGATCTGACAGTTCAGGAACTGGAGCTTGA...GCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR TCA 90 bp ACCGCTGGCCTAGTCAGTGCGTCTTCCCAGACCTTCTCAGTATTTTTCCTACTGTTCAGAAACAGGTGGTaGAGGAGTCAGAGAGGATTT +
Preference number: 2 (lower is better)
Translates to: TAGLVSASSQTFSVFFLLFRNRW*RSQRGF
Trigger: AAATCCTCTCTGACTCCTTCACCACCTGTTTCTGAA...CAGTAGGAAAAATACTGAGAAGGTCTGGGAAGACGCACTGACTAGGCCAGCGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR GCA 90 bp CTTTCTCCCAGGGTCTCTCTGTGTAGAGCATGCTGGTCTCAAACTGACAGTCCAGCAACTGTGGACGCATaGACACATTACTCTGAATTG +
Preference number: 2 (lower is better)
Translates to: LSPRVSLCRACWSQTDSPATVDA*THYSEL
Trigger: CAATTCAGAGTAATGTGTGCATGCGTCCACAGTTGC...TGGACTGTCAGTTTGAGACCAGCATGCTCTACACAGAGAGACCCTGGGAGAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CCA 90 bp CCTAAAACAGTCATCCTCAGTAGATGTCCTTGGGACCCAGACACCTTACAGACTGAACTGTTACAGAGCTaGCTTCCTAAGCCCTGTCTC +
Preference number: 2 (lower is better)
Translates to: PKTVILSRCPWDPDTLQTELLQS*LPKPCL
Trigger: GAGACAGGGCTTAGGAAGCCAGCTCTGTAACAGTTC...AGTCTGTAAGGTGTCTGGGTCCCAAGGACATCTACTGAGGATGACTGTTTTAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CCA 90 bp GATCAGCAACAAGCTCAACTATATGGACACCATGGCACTGGTGTGAAAGGCAGCCTATCTAGCAAAGGATaGCCTTTGCCTCAGGGTATG +
Preference number: 2 (lower is better)
Translates to: DQQQAQLYGHHGTGVKGSLSSKG*PLPQGM
Trigger: CATACCCTGAGGCAAAGGCCATCCTTTGCTAGATAG...GCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR TCA 90 bp CTTCCTAAGCCCTGTCTCTATCATCTCCCCCTTTCCAAGAAAGCTCACAATGAGCTGAACTGTCAGATCTaGGCATCACAATCTCTCCAC +
Preference number: 2 (lower is better)
Translates to: LPKPCLYHLPLSKKAHNELNCQI*ASQSLH
Trigger: GTGGAGAGATTGTGATGCTCAGATCTGACAGTTCAG...CTCATTGTGAGCTTTCTTGGAAAGGGGGAGATGATAGAGACAGGGCTTAGGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR TCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGCCCATTTCTATGTGGTaGGGAAAATCCTCCACAATG +
Preference number: 2 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTPISMW*GKSSTM
Trigger: CATTGTGGAGGATTTTCCTCACCACATAGAAATGGG...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR TCA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGACAGCTGCATCACTGTaGTCCTGTGATCACCTGTCC +
Preference number: 2 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPTAASL*SCDHLS
Trigger: GGACAGGTGATCACAGGATCACAGTGATGCAGCTGT...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR GCA 90 bp GATCAGCAACAAGCTCAACTATATGGACACCATGGCACTGGTGTGAAAGGCAGCGCAATGAATACAGGCTaGAGCCTTCAGAAACTGGAT +
Preference number: 2 (lower is better)
Translates to: DQQQAQLYGHHGTGVKGSAMNTG*SLQKLD
Trigger: ATCCAGTTTCTGAAGGCTGCAGCCTGTATTCATTGC...GCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CCA 90 bp AGAGTGAGAGAGAAGAGGCAAGGACAGGACACACAGCTGTTAGACCATGGAGGTTTAGTGTCGACTAGGTaGTGTGTTATGGCAGTTTTC +
Preference number: 2 (lower is better)
Translates to: RVREKRQGQDTQLLDHGGLVSTR*CVMAVF
Trigger: GAAAACTGCCATAACACACCACCTAGTCGACACTAA...ACCTCCATGGTCTAACAGCTGTGTGTCCTGTCCTTGCCTCTTCTCTCTCACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CCA 90 bp GAGACTGCAGGACAAAGTTCACTATCTTCAGAAACAGGTGGTGAAGGAGTCAGAAGGACCAACCATGCATaGCTAATCTGGTCCCAGCAT +
Preference number: 2 (lower is better)
Translates to: ETAGQSSLSSETGGEGVRRTNHA*LIWSQH
Trigger: ATGCTGGGACCAGATTAGCCATGCATGGTTGGTCCT...TCTGACTCCTTCACCACCTGTTTCTGAAGATAGTGAACTTTGTCCTGCAGTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR TCA 90 bp AGAGTGAGAGAGAAGAGGCAAGGACAGGACACACAGCTGTTAGACCATGGAGGTTTGAAAGAACATAGGTaGGTAGCTGTAGAGAGAACA +
Preference number: 2 (lower is better)
Translates to: RVREKRQGQDTQLLDHGGLKEHR*VAVERT
Trigger: TGTTCTCTCTACAGCTACTCACCTATGTTCTTTCAA...ACCTCCATGGTCTAACAGCTGTGTGTCCTGTCCTTGCCTCTTCTCTCTCACTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR TCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGCTGAGACAAAACATCTaGGAAGAGACACAGAGTGTA +
Preference number: 2 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTLRQNI*EETQSV
Trigger: TACACTCTGTGTCTCTTCTCAGATGTTTTGTCTCAG...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR TCA 90 bp GATCAGCAACAAGCTCAACTATATGGACACCATGGCACTGGTGTGAAAGGCAGCATGCACACATTACTCTaGATTGCTTTGACAGTGGAG +
Preference number: 2 (lower is better)
Translates to: DQQQAQLYGHHGTGVKGSMHTLL*IALTVE
Trigger: CTCCACTGTCAAAGCAATTCAGAGTAATGTGTGCAT...GCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR TCA 90 bp ACCGCTGGCCTAGTCAGTGCGTCTTCCCAGACCTTCTCAGTATTTTTCCTACTGGAAAATCCTCCACAATaGAAGGTTCAACCATTTCAT +
Preference number: 2 (lower is better)
Translates to: TAGLVSASSQTFSVFFLLENPPQ*KVQPFH
Trigger: ATGAAATGGTTGAACCTTTCATTGTGGAGGATTTTC...CAGTAGGAAAAATACTGAGAAGGTCTGGGAAGACGCACTGACTAGGCCAGCGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CCA 90 bp GATCAGCAACAAGCTCAACTATATGGACACCATGGCACTGGTGTGAAAGGCAGCGGTGTACAATATTACTaGAAAAGAAGTCTGCCTCTC +
Preference number: 2 (lower is better)
Translates to: DQQQAQLYGHHGTGVKGSGVQYY*KRSLPL
Trigger: GAGAGGCAGACTTCTTTTCCAGTAATATTGTACACC...GCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR TCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGTTAAGAGCAGTGAACTaGGCATTAACAATAGTTGCT +
Preference number: 2 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTLRAVN*ALTIVA
Trigger: AGCAACTATTGTTAATGCTCAGTTCACTGCTCTTAA...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR GCA 90 bp GAGACTGCAGGACAAAGTTCACTATCTTCAGAAACAGGTGGTGAAGGAGTCAGATGCACCCATGCAGAATaGCGTCTTCTCATGTTTAAA +
Preference number: 2 (lower is better)
Translates to: ETAGQSSLSSETGGEGVRCTHAE*RLLMFK
Trigger: TTTAAACATGAGAAGACGGCATTCTGCATGGGTGCA...TCTGACTCCTTCACCACCTGTTTCTGAAGATAGTGAACTTTGTCCTGCAGTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR GCA 90 bp TTCAGCAGCTCTGTGACTTTATTTGAAGCACTTACAGATAATAAAGTGACTTCACGCACTAGAATGCGCTaGACACAGCCCAGAGCTGGA +
Preference number: 2 (lower is better)
Translates to: FSSSVTLFEALTDNKVTSRTRMR*TQPRAG
Trigger: TCCAGCTCTGGGCTGTGTGCAGCGCATTCTAGTGCG...TGAAGTCACTTTATTATCTGTAAGTGCTTCAAATAAAGTCACAGAGCTGCTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR GCA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGCATGCTGCTGCCTCCTaGCATAGAAATGTGATCTTA +
Preference number: 2 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPHAAAS*HRNVIL
Trigger: TAAGATCACATTTCTATGGCAGGAGGCAGCAGCATG...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR TCA 90 bp CCTAAAACAGTCATCCTCAGTAGATGTCCTTGGGACCCAGACACCTTACAGACTAATGTAGTCACCTTGTaGTTGCTAGTGTTACTAACA +
Preference number: 2 (lower is better)
Translates to: PKTVILSRCPWDPDTLQTNVVTL*LLVLLT
Trigger: TGTTAGTAACACTAGCAATCACAAGGTGACTACATT...AGTCTGTAAGGTGTCTGGGTCCCAAGGACATCTACTGAGGATGACTGTTTTAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR GCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGCACATTACTCTGAATTaGTTTGACAGTGGAGAATTA +
Preference number: 2 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTHITLN*FDSGEL
Trigger: TAATTCTCCACTGTCAAAGCAATTCAGAGTAATGTG...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CCA 90 bp CTTCCTAAGCCCTGTCTCTATCATCTCCCCCTTTCCAAGAAAGCTCACAATGAGATGACTTTTCACATGTaGAAGAGCATCCTTAATACC +
Preference number: 2 (lower is better)
Translates to: LPKPCLYHLPLSKKAHNEMTFHM*KSILNT
Trigger: GGTATTAAGGATGCTCTTCCACATGTGAAAAGTCAT...CTCATTGTGAGCTTTCTTGGAAAGGGGGAGATGATAGAGACAGGGCTTAGGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CCA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGGCAGCCTTCAGAAACTaGATCACTGTTTTTAGGAGT +
Preference number: 2 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPAAFRN*ITVFRS
Trigger: ACTCCTAAAAACAGTGATCCAGTTTCTGAAGGCTGC...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CCA 90 bp GAGACTGCAGGACAAAGTTCACTATCTTCAGAAACAGGTGGTGAAGGAGTCAGACATGCATGGCTAATCTaGTCCCAGCATAAAACTTTA +
Preference number: 2 (lower is better)
Translates to: ETAGQSSLSSETGGEGVRHAWLI*SQHKTL
Trigger: TAAAGTTTTATGCTGGGACCAGATTAGCCATGCATG...TCTGACTCCTTCACCACCTGTTTCTGAAGATAGTGAACTTTGTCCTGCAGTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CCA 90 bp TCTTCCCAGACCTTCTCAGTATTTTTCCTACTGATTTTACTCATAGCAACACTAAGCCTCTGTAGGCCCTaGCTACACAATGCAAGCTCA +
Preference number: 2 (lower is better)
Translates to: SSQTFSVFFLLILLIATLSLCRP*LHNASS
Trigger: TGAGCTTGCATTGTGTAGCCAGGGCCTACAGAGGCT...TAGTGTTGCTATGAGTAAAATCAGTAGGAAAAATACTGAGAAGGTCTGGGAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR TCA 90 bp GAGACTGCAGGACAAAGTTCACTATCTTCAGAAACAGGTGGTGAAGGAGTCAGATTTTCCTTTGTGATGTaGCACAGTGTTGTGGAAAAA +
Preference number: 2 (lower is better)
Translates to: ETAGQSSLSSETGGEGVRFSFVM*HSVVEK
Trigger: TTTTTCCACAACACTGTGTCACATCACAAAGGAAAA...TCTGACTCCTTCACCACCTGTTTCTGAAGATAGTGAACTTTGTCCTGCAGTCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR TCA 90 bp AAATTAATTTTCTCCACATTAGACATTGGGACACCTCCTTTCAAGCTCCAGTTCGGCAGTTTTCCTTTGTaGTGTGACACAGTGTTGTGG +
Preference number: 2 (lower is better)
Translates to: KLIFSTLDIGTPPFKLQFGSFPL*CDTVLW
Trigger: CCACAACACTGTGTCACATCACAAAGGAAAACTGCC...GAACTGGAGCTTGAAAGGAGGTGTCCCAATGTCTAATGTGGAGAAAATTAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR TCA 90 bp TTCAGCAGCTCTGTGACTTTATTTGAAGCACTTACAGATAATAAAGTGACTTCACAGGCAGGACTACTGTaGCAGCTGCATCACTGTGAT +
Preference number: 2 (lower is better)
Translates to: FSSSVTLFEALTDNKVTSQAGLL*QLHHCD
Trigger: ATCACAGTGATGCAGCTGTCACAGTAGTCCTGCCTG...TGAAGTCACTTTATTATCTGTAAGTGCTTCAAATAAAGTCACAGAGCTGCTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR GCA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGGACTTCATAACTTCTTaGCCAGAAAAAGGTGTCACT +
Preference number: 2 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPDFITS*PEKGVT
Trigger: AGTGACACCTTTTTCTGGGCAAGAAGTTATGAAGTC...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR GCA 90 bp TCTTCCCAGACCTTCTCAGTATTTTTCCTACTGATTTTACTCATAGCAACACTAGGAGCTATTCCTGGTTaGACTAGAAGCTCCTCTGAG +
Preference number: 2 (lower is better)
Translates to: SSQTFSVFFLLILLIATLGAIPG*TRSSSE
Trigger: CTCAGAGGAGCTTCTAGTGCAACCAGGAATAGCTCC...TAGTGTTGCTATGAGTAAAATCAGTAGGAAAAATACTGAGAAGGTCTGGGAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR GCA 90 bp TCTTCCCAGACCTTCTCAGTATTTTTCCTACTGATTTTACTCATAGCAACACTAGTGTGTCATTCAAAGTaGAGCCCAGGTGCCTGTAAA +
Preference number: 2 (lower is better)
Translates to: SSQTFSVFFLLILLIATLVCHSK*SPGACK
Trigger: TTTACAGGCACCTGGGCTGCACTTTGAATGACACAC...TAGTGTTGCTATGAGTAAAATCAGTAGGAAAAATACTGAGAAGGTCTGGGAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CCA 90 bp TCTTCCCAGACCTTCTCAGTATTTTTCCTACTGATTTTACTCATAGCAACACTAATCCCTCCCCAGTGTTaGGATTACAGATATACAAAA +
Preference number: 2 (lower is better)
Translates to: SSQTFSVFFLLILLIATLIPPQC*DYRYTK
Trigger: TTTTGTATATCTGTAATCCCAACACTGGGGAGGGAT...TAGTGTTGCTATGAGTAAAATCAGTAGGAAAAATACTGAGAAGGTCTGGGAAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR GCA 90 bp TTCAGCAGCTCTGTGACTTTATTTGAAGCACTTACAGATAATAAAGTGACTTCAAAAACCATGCTCAGCTaGTACTGTGAGTTTTCTGAT +
Preference number: 2 (lower is better)
Translates to: FSSSVTLFEALTDNKVTSKTMLS*YCEFSD
Trigger: ATCAGAAAACTCACAGTAGCAGCTGAGCATGGTTTT...TGAAGTCACTTTATTATCTGTAAGTGCTTCAAATAAAGTCACAGAGCTGCTGAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CCA 90 bp TTCAGCAGCTCTGTGACTTTATTTGAAGCACTTACAGATAATAAAGTGACTTCAACAATGAGCCAAGTTTaGTACTTTCCTAGTATACAT +
Preference number: 2 (lower is better)
Translates to: FSSSVTLFEALTDNKVTSTMSQV*YFPSIH
Trigger: ATGTATACTAGGAAAGTACCAAACTTGGCTCATTGT...TGAAGTCACTTTATTATCTGTAAGTGCTTCAAATAAAGTCACAGAGCTGCTGAA
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 72 bp GCACACAGCCCAGAGCTGGAAAGCAGAGCCCCGAACTaGAGCAGCGGGGCTGAAAGCACAGGGAGAGGGTGC +
Preference number: 3 (lower is better)
Translates to: AHSPELESRAPN*SSGAESTGRGC
Trigger: GCACCCTCTCCCTGTGCTTTCAGCCCCGCTGCTGCAGTTCGGGGCTCTGCTTTCCAGCTCTGGGCTGTGTGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 72 bp GCAGCAGCGGGGCTGAAAGCACAGGGAGAGGGTGCTTaGTCTACTTCTAAGGCCTCCCTGAAATGGAGAAGC +
Preference number: 3 (lower is better)
Translates to: AAAGLKAQGEGA*STSKASLKWRS
Trigger: GCTTCTCCATTTCAGGGAGGCCTTAGAAGTAGAGCAAGCACCCTCTCCCTGTGCTTTCAGCCCCGCTGCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 72 bp CAGAATGGGACATGGGCTAGGCTGTGTAATCTTGAATaGATGGAGGGGAGTGCTCCCACAGCCCAGCCTCTC +
Preference number: 3 (lower is better)
Translates to: QNGTWARLCNLE*MEGSAPTAQPL
Trigger: GAGAGGCTGGGCTGTGGGAGCACTCCCCTCCATGCATTCAAGATTACACAGCCTAGCCCATGTCCCATTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 72 bp GGTCTCAGCATCTCAGGTTCTCTATCTAGCAAAGGATaGCCTTTGCCTCAGGGTATGCACCCGCACTCCTGG +
Preference number: 3 (lower is better)
Translates to: GLSISGSLSSKG*PLPQGMHPHSW
Trigger: CCAGGAGTGCGGGTGCATACCCTGAGGCAAAGGCCATCCTTTGCTAGATAGAGAACCTGAGATGCTGAGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 72 bp CAGCACCATGAACACGTAGGAAACTCTGCTTTAGCATaGCGTCAGAGGCGCACTAGAATGCGCTGCACACAG +
Preference number: 3 (lower is better)
Translates to: QHHEHVGNSALA*RQRRTRMRCTQ
Trigger: CTGTGTGCAGCGCATTCTAGTGCGCCTCTGACGTCATGCTAAAGCAGAGTTTCCTACGTGTTCATGGTGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 72 bp CTGTGCTGGCGGGGCCAGACCTTTGCAGAGTCAGACTaGACCCTAAGACACAAAGAGCAACTACACAAGAGA +
Preference number: 3 (lower is better)
Translates to: LCWRGQTFAESD*TLRHKEQLHKR
Trigger: TCTCTTGTGTAGTTGCTCTTTGTGTCTTAGGGTTCAGTCTGACTCTGCAAAGGTCTGGCCCCGCCAGCACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 72 bp GTAGTCACAGACAGCTGTGAGCCACCATATGGTTGCTaGGACTTGAACCTGGGTCATCTGGAAGTGCAGGCA +
Preference number: 3 (lower is better)
Translates to: VVTDSCEPPYGC*DLNLGHLEVQA
Trigger: TGCCTGCACTTCCAGATGACCCAGGTTCAAGTCTCAGCAACCATATGGTGGCTCACAGCTGTCTGTGACTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 72 bp ACAGGTGGTGAAGGAGTCAGAGAGGATTTGCGACACTaGTGCGTGAAGGTTGCTATCCCCTCTTCCTCCTTT +
Preference number: 3 (lower is better)
Translates to: TGGEGVREDLRH*CVKVAIPSSSF
Trigger: AAAGGAGGAAGAGGGGATAGCAACCTTCACGCAGCAGTGTCGCAAATCCTCTCTGACTCCTTCACCACCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 72 bp GAAGAGGCAAGGACAGGACACACAGCTGTTAGACCATaGAGGTTACTAGCACAAGAGAGGAACCGATGGCCT +
Preference number: 3 (lower is better)
Translates to: EEARTGHTAVRP*RLLAQERNRWP
Trigger: AGGCCATCGGTTCCTCTCTTGTGCTAGTAACCTCCATGGTCTAACAGCTGTGTGTCCTGTCCTTGCCTCTTC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 72 bp GGGGACACCTCTGGATCAGCAACAAGCTCAACTATATaGACACCATGGCACTGGTGTGAAAGGCAGCACTTC +
Preference number: 3 (lower is better)
Translates to: GDTSGSATSSTI*TPWHWCERQHF
Trigger: GAAGTGCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGATCCAGAGGTGTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 72 bp AGAAATTTCCCTAACTGTGCTTACCAACCTAGTGTCTaGCCCTCAAGTGGGGCCTTTGCAGGCCCTGCCAAT +
Preference number: 3 (lower is better)
Translates to: RNFPNCAYQPSV*PSSGAFAGPAN
Trigger: ATTGGCAGGGCCTGCAAAGGCCCCACTTGAGGGCCAGACACTAGGTTGGTAAGCACAGTTAGGGAAATTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 72 bp GTGAAGGAGTCAGAGAGGATTTGCGACACTGCTGCGTaGAGGTTGCTATCCCCTCTTCCTCCTTTCCATTCA +
Preference number: 3 (lower is better)
Translates to: VKESERICDTAA*RLLSPLPPFHS
Trigger: TGAATGGAAAGGAGGAAGAGGGGATAGCAACCTTCACGCAGCAGTGTCGCAAATCCTCTCTGACTCCTTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 72 bp ACATGTGTTCCTCCTCCCTGGCTTGGTTTTAGGGTCTaGAAAGTCGCAGCTGAATGCCTCCACTGGAAGGTA +
Preference number: 3 (lower is better)
Translates to: TCVPPPWLGFRV*KVAAECLHWKV
Trigger: TACCTTCCAGTGGAGGCATTCAGCTGCGACTTTTCAGACCCTAAAACCAAGCCAGGGAGGAGGAACACATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 72 bp CAAAAACTGAGATCTGTGCTGGCGGGGCCAGACCTTTaGAGAGTCAGACTGAACCCTAAGACACAAAGAGCA +
Preference number: 3 (lower is better)
Translates to: QKLRSVLAGPDL*RVRLNPKTQRA
Trigger: TGCTCTTTGTGTCTTAGGGTTCAGTCTGACTCTGCAAAGGTCTGGCCCCGCCAGCACAGATCTCAGTTTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 72 bp ATACCTAGAAGAGTGTACAGCATCCCCCTTCTCAATTaGGCTAGGCATCACCCCACGGAGCTATTCCTGGTT +
Preference number: 3 (lower is better)
Translates to: IPRRVYSIPLLN*ARHHPTELFLV
Trigger: AACCAGGAATAGCTCCGTGGGGTGATGCCTAGCTCAATTGAGAAGGGGGATGCTGTACACTCTTCTAGGTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 72 bp GAGAGACATCCTCGCCCTTCACTGCTATGCGCACCTTaGGGGAACAGTAGTTTGATAAGGAACTGTTACAGA +
Preference number: 3 (lower is better)
Translates to: ERHPRPSLLCAP*GNSSLIRNCYR
Trigger: TCTGTAACAGTTCCTTATCAAACTACTGTTCCCGCAAGGTGCGCATAGCAGTGAAGGGCGAGGATGTCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 72 bp ATAGAGGAAGAGAGACATCCTCGCCCTTCACTGCTATaGGCACCTTGCGGGAACAGTAGTTTGATAAGGAAC +
Preference number: 3 (lower is better)
Translates to: IEEERHPRPSLL*APCGNSSLIRN
Trigger: GTTCCTTATCAAACTACTGTTCCCGCAAGGTGCGCATAGCAGTGAAGGGCGAGGATGTCTCTCTTCCTCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 72 bp AGTCAGAGAGGATTTGCGACACTGCTGCGTGAAGGTTaGTATCCCCTCTTCCTCCTTTCCATTCAAGTCTCA +
Preference number: 3 (lower is better)
Translates to: SQRGFATLLREG*YPLFLLSIQVS
Trigger: TGAGACTTGAATGGAAAGGAGGAAGAGGGGATAGCAACCTTCACGCAGCAGTGTCGCAAATCCTCTCTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 72 bp AGTGCTTGTATTCCTGACAAGAGCCTCTGTAGGCCCTaGCTACACAATGCAAGCTCACTCGATAACCGTCAA +
Preference number: 3 (lower is better)
Translates to: SACIPDKSLCRP*LHNASSLDNRQ
Trigger: TTGACGGTTATCGAGTGAGCTTGCATTGTGTAGCCAGGGCCTACAGAGGCTCTTGTCAGGAATACAAGCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 72 bp CCTCCTTTCAAGCTCCAGTTCCTGAACTGTCAGATCTaGGCATCACAATCTCTCCACCATAGGGGAAATCCA +
Preference number: 3 (lower is better)
Translates to: PPFKLQFLNCQI*ASQSLHHRGNP
Trigger: TGGATTTCCCCTATGGTGGAGAGATTGTGATGCTCAGATCTGACAGTTCAGGAACTGGAGCTTGAAAGGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 72 bp TGCAGGACAAAGTTCACTATCTTCAGAAACAGGTGGTaGAGGAGTCAGAGAGGATTTGCGACACTGCTGCGT +
Preference number: 3 (lower is better)
Translates to: CRTKFTIFRNRW*RSQRGFATLLR
Trigger: ACGCAGCAGTGTCGCAAATCCTCTCTGACTCCTTCACCACCTGTTTCTGAAGATAGTGAACTTTGTCCTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 72 bp AGAGCTTTCTCCACGTTTAAAGATGATGATTCCTGCTaGGCTGATCAATGGCAGCAAGGAGAGAGGCACAGG +
Preference number: 3 (lower is better)
Translates to: RAFSTFKDDDSC*ADQWQQGERHR
Trigger: CCTGTGCCTCTCTCCTTGCTGCCATTGATCAGCTCAGCAGGAATCATCATCTTTAAACGTGGAGAAAGCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 72 bp ACAGCTACTCTAAAGCCACAAGTGTGTCATTCAAAGTaGAGCCCAGGTGCCTGTAAATCCCTAGTGCAAGAG +
Preference number: 3 (lower is better)
Translates to: TATLKPQVCHSK*SPGACKSLVQE
Trigger: CTCTTGCACTAGGGATTTACAGGCACCTGGGCTGCACTTTGAATGACACACTTGTGGCTTTAGAGTAGCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 72 bp TCAGCAACAAGCTCAACTATATGGACACCATGGCACTaGTGTGAAAGGCAGCACTTCCAAGTCGACATCTTC +
Preference number: 3 (lower is better)
Translates to: SATSSTIWTPWH*CERQHFQVDIF
Trigger: GAAGATGTCGACTTGGAAGTGCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CAA 90 bp GAGACTGCAGGACAAAGTTCACTATCTTCAGAAACAGGTGGTGAAGGAGTCAGACTAGCTTTCTGTAGCTaGAGGATGATTCTGACCTCC +
Preference number: 3 (lower is better)
Translates to: ETAGQSSLSSETGGEGVRLAFCS*RMILTS
Trigger: GGAGGTCAGAATCATCCTCAAGCTACAGAAAGCTAG...TCTGACTCCTTCACCACCTGTTTCTGAAGATAGTGAACTTTGTCCTGCAGTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 72 bp TTAGGACTTCTGGGTGGGAGCTTGTCCACGCTCATCTaGGAGCTTTCTCCACGTTTAAAGATGATGATTCCT +
Preference number: 3 (lower is better)
Translates to: LGLLGGSLSTLI*ELSPRLKMMIP
Trigger: AGGAATCATCATCTTTAAACGTGGAGAAAGCTCTCAGATGAGCGTGGACAAGCTCCCACCCAGAAGTCCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 72 bp AACAAGCTCAACTATATGGACACCATGGCACTGGTGTaGAAGGCAGCACTTCCAAGTCGACATCTTCTAGAG +
Preference number: 3 (lower is better)
Translates to: NKLNYMDTMALV*KAALPSRHLLE
Trigger: CTCTAGAAGATGTCGACTTGGAAGTGCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 72 bp ACAAAGAGCAACTACACAAGAGATCACAGCAGCAGCTaGAGAAGCGAGAGCACAGTGCATGCAAACGTAGTA +
Preference number: 3 (lower is better)
Translates to: TKSNYTRDHSSS*RSESTVHANVV
Trigger: TACTACGTTTGCATGCACTGTGCTCTCGCTTCTTCAGCTGCTGCTGTGATCTCTTGTGTAGTTGCTCTTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 72 bp ACTTTGCTTTCTCCCAGGGTCTCTCTGTGTAGAGCATaGTGGTCTCAAACTGACAGTCCAAGTGCTAGAATT +
Preference number: 3 (lower is better)
Translates to: TLLSPRVSLCRA*WSQTDSPSARI
Trigger: AATTCTAGCACTTGGACTGTCAGTTTGAGACCAGCATGCTCTACACAGAGAGACCCTGGGAGAAAGCAAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 72 bp GTCCAAGTGCTAGAATTAAAGCATGCACTACCACACTaGTTCACCAATGGGTCTCAGCATCTCAGGTTCTCT +
Preference number: 3 (lower is better)
Translates to: VQVLELKHALPH*FTNGSQHLRFS
Trigger: AGAGAACCTGAGATGCTGAGACCCATTGGTGAACCAGTGTGGTAGTGCATGCTTTAATTCTAGCACTTGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CAA 90 bp CCTAAAACAGTCATCCTCAGTAGATGTCCTTGGGACCCAGACACCTTACAGACTTATCCCTCCCCAGTGTaGGGATTACAGATATACAAA +
Preference number: 3 (lower is better)
Translates to: PKTVILSRCPWDPDTLQTYPSPV*GLQIYK
Trigger: TTTGTATATCTGTAATCCCAACACTGGGGAGGGATA...AGTCTGTAAGGTGTCTGGGTCCCAAGGACATCTACTGAGGATGACTGTTTTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CAA 90 bp CCTAAAACAGTCATCCTCAGTAGATGTCCTTGGGACCCAGACACCTTACAGACTTGCGGGAACAGTAGTTaGATAAGGAACTGTTACAGA +
Preference number: 3 (lower is better)
Translates to: PKTVILSRCPWDPDTLQTCGNSS*IRNCYR
Trigger: TCTGTAACAGTTCCTTATCAAACTACTGTTCCCGCA...AGTCTGTAAGGTGTCTGGGTCCCAAGGACATCTACTGAGGATGACTGTTTTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 72 bp AGGTACATTTACAAATGTGACCGCTGGCCTAGTCAGTaGGTCTTCCCAGACCTTCTCAGTATTTTTCCTACT +
Preference number: 3 (lower is better)
Translates to: RYIYKCDRWPSQ*VFPDLLSIFPT
Trigger: AGTAGGAAAAATACTGAGAAGGTCTGGGAAGACGCACTGACTAGGCCAGCGGTCACATTTGTAAATGTACCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 72 bp CACCCACCTAAAACAGTCATCCTCAGTAGATGTCCTTaGGACCCAGACACCTTACAGACTCCTATAAATCAA +
Preference number: 3 (lower is better)
Translates to: HPPKTVILSRCP*DPDTLQTPINQ
Trigger: TTGATTTATAGGAGTCTGTAAGGTGTCTGGGTCCCAAGGACATCTACTGAGGATGACTGTTTTAGGTGGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 72 bp TTGCTTTCTCCCAGGGTCTCTCTGTGTAGAGCATGCTaGTCTCAAACTGACAGTCCAAGTGCTAGAATTAAA +
Preference number: 3 (lower is better)
Translates to: LLSPRVSLCRAC*SQTDSPSARIK
Trigger: TTTAATTCTAGCACTTGGACTGTCAGTTTGAGACCAGCATGCTCTACACAGAGAGACCCTGGGAGAAAGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CAA 90 bp GATCAGCAACAAGCTCAACTATATGGACACCATGGCACTGGTGTGAAAGGCAGCAGGAAAAGCCATTTTTaGAAGCAGCATTATACCCAA +
Preference number: 3 (lower is better)
Translates to: DQQQAQLYGHHGTGVKGSRKSHF*KQHYTQ
Trigger: TTGGGTATAATGCTGCTTCAAAAAATGGCTTTTCCT...GCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 72 bp TCACAGCAGCAGCTGAAGAAGCGAGAGCACAGTGCATaGAAACGTAGTACAGAAAAGCTAGCTGATATTTAT +
Preference number: 3 (lower is better)
Translates to: SQQQLKKREHSA*KRSTEKLADIY
Trigger: ATAAATATCAGCTAGCTTTTCTGTACTACGTTTGCATGCACTGTGCTCTCGCTTCTTCAGCTGCTGCTGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 72 bp AGAATTAAAGCATGCACTACCACACTGGTTCACCAATaGGTCTCAGCATCTCAGGTTCTCTATCTAGCAAAG +
Preference number: 3 (lower is better)
Translates to: RIKACTTTLVHQ*VSASQVLYLAK
Trigger: CTTTGCTAGATAGAGAACCTGAGATGCTGAGACCCATTGGTGAACCAGTGTGGTAGTGCATGCTTTAATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CCA 72 bp GGAGAAAACCATTCCTCATTCTTAGTGTCGACTAGGTaGTGTGTTATGGCAGTTTTCCTTTGTGATGTGACA +
Preference number: 3 (lower is better)
Translates to: GENHSSFLVSTR*CVMAVFLCDVT
Trigger: TGTCACATCACAAAGGAAAACTGCCATAACACACCACCTAGTCGACACTAAGAATGAGGAATGGTTTTCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CAA 90 bp GAGACTGCAGGACAAAGTTCACTATCTTCAGAAACAGGTGGTGAAGGAGTCAGACAAAAGCATACATCATaGATGAGGATCTTTGGAAAG +
Preference number: 3 (lower is better)
Translates to: ETAGQSSLSSETGGEGVRQKHTS*MRIFGK
Trigger: CTTTCCAAAGATCCTCATCAATGATGTATGCTTTTG...TCTGACTCCTTCACCACCTGTTTCTGAAGATAGTGAACTTTGTCCTGCAGTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 72 bp TGCACCCATGCAGAATGCCGTCTTCTCATGTTTAAATaGCTTTTCACATGTGGAAGAGCATCCTTAATACCA +
Preference number: 3 (lower is better)
Translates to: CTHAECRLLMFK*LFTCGRASLIP
Trigger: TGGTATTAAGGATGCTCTTCCACATGTGAAAAGTCATTTAAACATGAGAAGACGGCATTCTGCATGGGTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 72 bp ACTGTGGACGCATGCACACATTACTCTGAATTGCTTTaGCAGTGGAGAATTAAATCAGTAGTGGTCAACCTT +
Preference number: 3 (lower is better)
Translates to: TVDACTHYSELL*QWRIKSVVVNL
Trigger: AAGGTTGACCACTACTGATTTAATTCTCCACTGTCAAAGCAATTCAGAGTAATGTGTGCATGCGTCCACAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR GCA 72 bp GAAATAATGCATACTAAACCAGACCCACTCCATTTCTaGACCCATGCAGAATGCCGTCTTCTCATGTTTAAA +
Preference number: 3 (lower is better)
Translates to: EIMHTKPDPLHF*THAECRLLMFK
Trigger: TTTAAACATGAGAAGACGGCATTCTGCATGGGTGCAGAAATGGAGTGGGTCTGGTTTAGTATGCATTATTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CAA 90 bp AAATTAATTTTCTCCACATTAGACATTGGGACACCTCCTTTCAAGCTCCAGTTCAGAACAAGTCCTGTCTaGGACAAGCCAACTCTTATC +
Preference number: 3 (lower is better)
Translates to: KLIFSTLDIGTPPFKLQFRTSPV*DKPTLI
Trigger: GATAAGAGTTGGCTTGTCCAAGACAGGACTTGTTCT...GAACTGGAGCTTGAAAGGAGGTGTCCCAATGTCTAATGTGGAGAAAATTAATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 72 bp GGATCAGATTTTGATCCATTGCCCATTTCTATGTGGTaGGGAAAATCCTCCACAATGAAAGGTTCAACCATT +
Preference number: 3 (lower is better)
Translates to: GSDFDPLPISMW*GKSSTMKGSTI
Trigger: AATGGTTGAACCTTTCATTGTGGAGGATTTTCCTCACCACATAGAAATGGGCAATGGATCAAAATCTGATCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR-3UTR CAA 90 bp AAATTAATTTTCTCCACATTAGACATTGGGACACCTCCTTTCAAGCTCCAGTTCGAAGCATTTAAATACTaGTCACATTGGGACTCTTCA +
Preference number: 3 (lower is better)
Translates to: KLIFSTLDIGTPPFKLQFEAFKY*SHWDSS
Trigger: TGAAGAGTCCCAATGTGACAAGTATTTAAATGCTTC...GAACTGGAGCTTGAAAGGAGGTGTCCCAATGTCTAATGTGGAGAAAATTAATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR TCA 72 bp TCTGAGAAGAGACACAGAGTGTATTCTCACACACTATaGCATCAAAAATGCAATCGCTTAGGATCAGATTTT +
Preference number: 3 (lower is better)
Translates to: SEKRHRVYSHTL*HQKCNRLGSDF
Trigger: AAAATCTGATCCTAAGCGATTGCATTTTTGATGTCATAGTGTGTGAGAATACACTCTGTGTCTCTTCTCAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CAA 72 bp CTGGCCCTCAAGTGGGGCCTTTGCAGGCCCTGCCAATaGAGCCAGGGCTGTTGGCTAGCCCCACCTCTACCC +
Preference number: 4 (lower is better)
Translates to: LALKWGLCRPCQ*SQGCWLAPPLP
Trigger: GGGTAGAGGTGGGGCTAGCCAACAGCCCTGGCTCAATTGGCAGGGCCTGCAAAGGCCCCACTTGAGGGCCAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp ACCGCTGGCCTAGTCAGTGCGTCTTCCCAGACCTTCTCAGTATTTTTCCTACTGGAGACTGAGAGGTGCTaGGGGCGGGGCCTACAGGAG +
Preference number: 4 (lower is better)
Translates to: TAGLVSASSQTFSVFFLLETERC*GRGLQE
Trigger: CTCCTGTAGGCCCCGCCCCCAGCACCTCTCAGTCTC...CAGTAGGAAAAATACTGAGAAGGTCTGGGAAGACGCACTGACTAGGCCAGCGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CAA 72 bp CCAGCCAGAATGGGACATGGGCTAGGCTGTGTAATCTaGAATGCATGGAGGGGAGTGCTCCCACAGCCCAGC +
Preference number: 4 (lower is better)
Translates to: PARMGHGLGCVI*NAWRGVLPQPS
Trigger: GCTGGGCTGTGGGAGCACTCCCCTCCATGCATTCAAGATTACACAGCCTAGCCCATGTCCCATTCTGGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGCATGCCTCTGGCCACTaGTGCTGGCGCCACTCCCTC +
Preference number: 4 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTHASGH*CWRHSL
Trigger: GAGGGAGTGGCGCCAGCAGCAGTGGCCAGAGGCATG...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGTCTGAGACTGAGAGGTaGTGGGGGCGGGGCCTACAG +
Preference number: 4 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTSETER*WGRGLQ
Trigger: CTGTAGGCCCCGCCCCCAGCACCTCTCAGTCTCAGA...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGCGAGCCCTTGGTGGCTaGTTTGTGCCTGCTGGAGGG +
Preference number: 4 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTRALGG*FVPAGG
Trigger: CCCTCCAGCAGGCACAAAGCAGCCACCAAGGGCTCG...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp GATCAGCAACAAGCTCAACTATATGGACACCATGGCACTGGTGTGAAAGGCAGCTGCTGGAGGGCATGCTaGCAGCCATGTCCACAGGGG +
Preference number: 4 (lower is better)
Translates to: DQQQAQLYGHHGTGVKGSCWRAC*QPCPQG
Trigger: CCCCTGTGGACATGGCTGCCAGCATGCCCTCCAGCA...GCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp CTTTCTCCCAGGGTCTCTCTGTGTAGAGCATGCTGGTCTCAAACTGACAGTCCATCCTCGAGCCCTTGGTaGCTGCTTTGTGCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: LSPRVSLCRACWSQTDSPSSSPW*LLCACW
Trigger: CCAGCAGGCACAAAGCAGCCACCAAGGGCTCGAGGA...TGGACTGTCAGTTTGAGACCAGCATGCTCTACACAGAGAGACCCTGGGAGAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp ACCGCTGGCCTAGTCAGTGCGTCTTCCCAGACCTTCTCAGTATTTTTCCTACTGTTGGAGCCTTCTCCTTaGCCTCCTTGGAGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: TAGLVSASSQTFSVFFLLLEPSP*PPWSCW
Trigger: CCAGCAGCTCCAAGGAGGCCAAGGAGAAGGCTCCAA...CAGTAGGAAAAATACTGAGAAGGTCTGGGAAGACGCACTGACTAGGCCAGCGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGGTACTTAGGAGTCTGTaGGGAGGGAGGCAGGCTCTC +
Preference number: 4 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTVLRSL*GGRQAL
Trigger: GAGAGCCTGCCTCCCTCCTCACAGACTCCTAAGTAC...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp ACCGCTGGCCTAGTCAGTGCGTCTTCCCAGACCTTCTCAGTATTTTTCCTACTGCAGATCCACTGTGGCTaGTCGAGTCATCCCTGGAGT +
Preference number: 4 (lower is better)
Translates to: TAGLVSASSQTFSVFFLLQIHCG*SSHPWS
Trigger: ACTCCAGGGATGACTCGAGCAGCCACAGTGGATCTG...CAGTAGGAAAAATACTGAGAAGGTCTGGGAAGACGCACTGACTAGGCCAGCGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp AGAGTGAGAGAGAAGAGGCAAGGACAGGACACACAGCTGTTAGACCATGGAGGTTGTGCAGGAGACTTCTaGCTCCCACGGCCACTTTCT +
Preference number: 4 (lower is better)
Translates to: RVREKRQGQDTQLLDHGGCAGDF*LPRPLS
Trigger: AGAAAGTGGCCGTGGGAGGCAGAAGTCTCCTGCACA...ACCTCCATGGTCTAACAGCTGTGTGTCCTGTCCTTGCCTCTTCTCTCTCACTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp CTTCCTAAGCCCTGTCTCTATCATCTCCCCCTTTCCAAGAAAGCTCACAATGAGTGGCTGCTTTGTGCCTaGTGGAGGGCATGCTGGCAG +
Preference number: 4 (lower is better)
Translates to: LPKPCLYHLPLSKKAHNEWLLCA*WRACWQ
Trigger: CTGCCAGCATGCCCTCCAGCAGGCACAAAGCAGCCA...CTCATTGTGAGCTTTCTTGGAAAGGGGGAGATGATAGAGACAGGGCTTAGGAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp AGAGTGAGAGAGAAGAGGCAAGGACAGGACACACAGCTGTTAGACCATGGAGGTGAGAGGAGAACTAGGTaGGAAGGCGTCTTCACCCTG +
Preference number: 4 (lower is better)
Translates to: RVREKRQGQDTQLLDHGGERRTR*EGVFTL
Trigger: CAGGGTGAAGACGCCTTCCCACCTAGTTCTCCTCTC...ACCTCCATGGTCTAACAGCTGTGTGTCCTGTCCTTGCCTCTTCTCTCTCACTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp ACCGCTGGCCTAGTCAGTGCGTCTTCCCAGACCTTCTCAGTATTTTTCCTACTGACTCCTGTCCATCCATaGGCCGTACATAGGCAGTGG +
Preference number: 4 (lower is better)
Translates to: TAGLVSASSQTFSVFFLLTPVHP*AVHRQW
Trigger: CCACTGCCTATGTACGGCCCATGGATGGACAGGAGT...CAGTAGGAAAAATACTGAGAAGGTCTGGGAAGACGCACTGACTAGGCCAGCGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp CTTCCTAAGCCCTGTCTCTATCATCTCCCCCTTTCCAAGAAAGCTCACAATGAGTCTCCTTGGCCTCCTTaGAGCTGCTGGGACCCTTGC +
Preference number: 4 (lower is better)
Translates to: LPKPCLYHLPLSKKAHNESPWPP*SCWDPC
Trigger: GCAAGGGTCCCAGCAGCTCCAAGGAGGCCAAGGAGA...CTCATTGTGAGCTTTCTTGGAAAGGGGGAGATGATAGAGACAGGGCTTAGGAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGAGTCAGACCCAGAGCTaGTCTCAGATCCACTGTGGC +
Preference number: 4 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTSQTQS*SQIHCG
Trigger: GCCACAGTGGATCTGAGAGCAGCTCTGGGTCTGACT...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGGCCTGCTGGAGGGCATaGTGGCAGCCATGTCCACAG +
Preference number: 4 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPACWRA*WQPCPQ
Trigger: CTGTGGACATGGCTGCCAGCATGCCCTCCAGCAGGC...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp AGAGTGAGAGAGAAGAGGCAAGGACAGGACACACAGCTGTTAGACCATGGAGGTAGCTGCTCTTGCTGCTaGTGCCACTGTTCTCTTTGC +
Preference number: 4 (lower is better)
Translates to: RVREKRQGQDTQLLDHGGSCSCC*CHCSLC
Trigger: GCAAAGAGAACAGTGGCAGCAGCAGCAAGAGCAGCT...ACCTCCATGGTCTAACAGCTGTGTGTCCTGTCCTTGCCTCTTCTCTCTCACTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp AGAGTGAGAGAGAAGAGGCAAGGACAGGACACACAGCTGTTAGACCATGGAGGTAGCTGCTGGGACCCTTaGCTTCAGTCTTCTTCTGCT +
Preference number: 4 (lower is better)
Translates to: RVREKRQGQDTQLLDHGGSCWDP*LQSSSA
Trigger: AGCAGAAGAAGACTGAAGGCAAGGGTCCCAGCAGCT...ACCTCCATGGTCTAACAGCTGTGTGTCCTGTCCTTGCCTCTTCTCTCTCACTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp GAGACTGCAGGACAAAGTTCACTATCTTCAGAAACAGGTGGTGAAGGAGTCAGATGGCCTCCTTGGAGCTaGTGGGACCCTTGCCTTCAG +
Preference number: 4 (lower is better)
Translates to: ETAGQSSLSSETGGEGVRWPPWS*WDPCLQ
Trigger: CTGAAGGCAAGGGTCCCAGCAGCTCCAAGGAGGCCA...TCTGACTCCTTCACCACCTGTTTCTGAAGATAGTGAACTTTGTCCTGCAGTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp CTTCCTAAGCCCTGTCTCTATCATCTCCCCCTTTCCAAGAAAGCTCACAATGAGGCATCCCAACAGCTTTaGTCCCCAAGCCGGGTGAAG +
Preference number: 4 (lower is better)
Translates to: LPKPCLYHLPLSKKAHNEASQQL*SPSRVK
Trigger: CTTCACCCGGCTTGGGGAGCAAAGCTGTTGGGATGC...CTCATTGTGAGCTTTCTTGGAAAGGGGGAGATGATAGAGACAGGGCTTAGGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp GATCAGCAACAAGCTCAACTATATGGACACCATGGCACTGGTGTGAAAGGCAGCCTCTCAGATCCACTGTaGCTGCTCGAGTCATCCCTG +
Preference number: 4 (lower is better)
Translates to: DQQQAQLYGHHGTGVKGSLSDPL*LLESSL
Trigger: CAGGGATGACTCGAGCAGCCACAGTGGATCTGAGAG...GCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp ACCGCTGGCCTAGTCAGTGCGTCTTCCCAGACCTTCTCAGTATTTTTCCTACTGCAGTTCTCCTCTGAGTaGTACTGTCGCTCTGTGCAG +
Preference number: 4 (lower is better)
Translates to: TAGLVSASSQTFSVFFLLQFSSE*YCRSVQ
Trigger: CTGCACAGAGCGACAGTACCACTCAGAGGAGAACTG...CAGTAGGAAAAATACTGAGAAGGTCTGGGAAGACGCACTGACTAGGCCAGCGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGTCTTCTGCTTCGCTGTaGAGGAGGAGCTGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTSSASL*RRSCSC
Trigger: GCAAGAGCAGCTCCTCCTCCACAGCGAAGCAGAAGA...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGCCACTGAGGAGGGTTTaGCAGGAGTCCTGTTGCTTT +
Preference number: 4 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTPLRRV*QESCCF
Trigger: AAAGCAACAGGACTCCTGTCAAACCCTCCTCAGTGG...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp CCTAAAACAGTCATCCTCAGTAGATGTCCTTGGGACCCAGACACCTTACAGACTAGGACGACGACTGACTaGCAGTCCTCTTCCGAGAAC +
Preference number: 4 (lower is better)
Translates to: PKTVILSRCPWDPDTLQTRTTTD*QSSSEN
Trigger: GTTCTCGGAAGAGGACTGTCAGTCAGTCGTCGTCCT...AGTCTGTAAGGTGTCTGGGTCCCAAGGACATCTACTGAGGATGACTGTTTTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp AGAGTGAGAGAGAAGAGGCAAGGACAGGACACACAGCTGTTAGACCATGGAGGTTTTAAGGACGACGACTaGCTGACAGTCCTCTTCCGA +
Preference number: 4 (lower is better)
Translates to: RVREKRQGQDTQLLDHGGFKDDD*LTVLFR
Trigger: TCGGAAGAGGACTGTCAGTCAGTCGTCGTCCTTAAA...ACCTCCATGGTCTAACAGCTGTGTGTCCTGTCCTTGCCTCTTCTCTCTCACTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp CCTAAAACAGTCATCCTCAGTAGATGTCCTTGGGACCCAGACACCTTACAGACTGCTCCCCAAGCCGGGTaGAGGTGCTTGAGAATTACT +
Preference number: 4 (lower is better)
Translates to: PKTVILSRCPWDPDTLQTAPQAG*RCLRIT
Trigger: AGTAATTCTCAAGCACCTTCACCCGGCTTGGGGAGC...AGTCTGTAAGGTGTCTGGGTCCCAAGGACATCTACTGAGGATGACTGTTTTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp GAGACTGCAGGACAAAGTTCACTATCTTCAGAAACAGGTGGTGAAGGAGTCAGAGGTACTGTCGCTCTGTaGAGGAGACTTCTGCCTCCC +
Preference number: 4 (lower is better)
Translates to: ETAGQSSLSSETGGEGVRGTVAL*RRLLPP
Trigger: GGGAGGCAGAAGTCTCCTGCACAGAGCGACAGTACC...TCTGACTCCTTCACCACCTGTTTCTGAAGATAGTGAACTTTGTCCTGCAGTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGCTGTGGAGGAGGAGCTaGTCTTGCTGCTGCTGCCAC +
Preference number: 4 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPLWRRS*SCCCCH
Trigger: GTGGCAGCAGCAGCAAGAGCAGCTCCTCCTCCACAG...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp AGAGTGAGAGAGAAGAGGCAAGGACAGGACACACAGCTGTTAGACCATGGAGGTTTGAGGATCGAGATTTaGAGTGCTCTGAGCCGTGCT +
Preference number: 4 (lower is better)
Translates to: RVREKRQGQDTQLLDHGGLRIEI*SALSRA
Trigger: AGCACGGCTCAGAGCACTCCAAATCTCGATCCTCAA...ACCTCCATGGTCTAACAGCTGTGTGTCCTGTCCTTGCCTCTTCTCTCTCACTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp AGAGTGAGAGAGAAGAGGCAAGGACAGGACACACAGCTGTTAGACCATGGAGGTCTTGTTTGTTGGTGGTaGTTCAGGCTCAGGAGATGC +
Preference number: 4 (lower is better)
Translates to: RVREKRQGQDTQLLDHGGLVCWW*FRLRRC
Trigger: GCATCTCCTGAGCCTGAACCACCACCAACAAACAAG...ACCTCCATGGTCTAACAGCTGTGTGTCCTGTCCTTGCCTCTTCTCTCTCACTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp CTTTCTCCCAGGGTCTCTCTGTGTAGAGCATGCTGGTCTCAAACTGACAGTCCATTGCCACTTGTTTGTTaGTGGTGGTTCAGGCTCAGG +
Preference number: 4 (lower is better)
Translates to: LSPRVSLCRACWSQTDSPLPLVC*WWFRLR
Trigger: CCTGAGCCTGAACCACCACCAACAAACAAGTGGCAA...TGGACTGTCAGTTTGAGACCAGCATGCTCTACACAGAGAGACCCTGGGAGAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp GAGACTGCAGGACAAAGTTCACTATCTTCAGAAACAGGTGGTGAAGGAGTCAGAGATCTGTGTAGTTACTaGCAGTGCCCTGCTCCCGGC +
Preference number: 4 (lower is better)
Translates to: ETAGQSSLSSETGGEGVRDLCSY*QCPAPG
Trigger: GCCGGGAGCAGGGCACTGCCAGTAACTACACAGATC...TCTGACTCCTTCACCACCTGTTTCTGAAGATAGTGAACTTTGTCCTGCAGTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp GAGACTGCAGGACAAAGTTCACTATCTTCAGAAACAGGTGGTGAAGGAGTCAGAGTTTCCTCGAGCCCTTaGTGGCTGCTTTGTGCCTGC +
Preference number: 4 (lower is better)
Translates to: ETAGQSSLSSETGGEGVRVSSSP*WLLCAC
Trigger: GCAGGCACAAAGCAGCCACCAAGGGCTCGAGGAAAC...TCTGACTCCTTCACCACCTGTTTCTGAAGATAGTGAACTTTGTCCTGCAGTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGCTGCTGGATGGCTTGTaGCCTGATGAGTTCTTGTCC +
Preference number: 4 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTLLDGL*PDEFLS
Trigger: GGACAAGAACTCATCAGGCCACAAGCCATCCAGCAG...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp CTTCCTAAGCCCTGTCTCTATCATCTCCCCCTTTCCAAGAAAGCTCACAATGAGGGGTTTTCCAGGGCTTaGGGATCGAGATTTGGAGTG +
Preference number: 4 (lower is better)
Translates to: LPKPCLYHLPLSKKAHNEGFSRA*GSRFGV
Trigger: CACTCCAAATCTCGATCCTCAAGCCCTGGAAAACCC...CTCATTGTGAGCTTTCTTGGAAAGGGGGAGATGATAGAGACAGGGCTTAGGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp CTTTCTCCCAGGGTCTCTCTGTGTAGAGCATGCTGGTCTCAAACTGACAGTCCAGTTTTGCATGGTGTATaGATAGCCGTTAGAGGGGGA +
Preference number: 4 (lower is better)
Translates to: LSPRVSLCRACWSQTDSPVLHGV*IAVRGG
Trigger: TCCCCCTCTAACGGCTATTCATACACCATGCAAAAC...TGGACTGTCAGTTTGAGACCAGCATGCTCTACACAGAGAGACCCTGGGAGAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGCCCACGGCCACTTTCTaGTCCCTTTTGGATGGTTTT +
Preference number: 4 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTPTATF*SLLDGF
Trigger: AAAACCATCCAAAAGGGATCAGAAAGTGGCCGTGGG...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp GAGACTGCAGGACAAAGTTCACTATCTTCAGAAACAGGTGGTGAAGGAGTCAGACCGACAGTTCTCCTCTaGGTGGTACTGTCGCTCTGT +
Preference number: 4 (lower is better)
Translates to: ETAGQSSLSSETGGEGVRPTVLL*VVLSLC
Trigger: ACAGAGCGACAGTACCACTCAGAGGAGAACTGTCGG...TCTGACTCCTTCACCACCTGTTTCTGAAGATAGTGAACTTTGTCCTGCAGTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp AGAGTGAGAGAGAAGAGGCAAGGACAGGACACACAGCTGTTAGACCATGGAGGTGGACGGTTTACTGGCTaGCTTGTACTTCTTCTTCTC +
Preference number: 4 (lower is better)
Translates to: RVREKRQGQDTQLLDHGGGRFTG*LVLLLL
Trigger: GAGAAGAAGAAGTACAAGTCAGCCAGTAAACCGTCC...ACCTCCATGGTCTAACAGCTGTGTGTCCTGTCCTTGCCTCTTCTCTCTCACTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGACTACTCTGCTTAGATaGCTCTCTGCTGCTGGATGG +
Preference number: 4 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTTTLLR*LSAAGW
Trigger: CCATCCAGCAGCAGAGAGTCATCTAAGCAGAGTAGT...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGGGGGACTTGGATTCCTaGGCGTTCTTCTCTAATGCA +
Preference number: 4 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTGDLDS*AFFSNA
Trigger: TGCATTAGAGAAGAACGCTCAGGAATCCAAGTCCCC...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp GATCAGCAACAAGCTCAACTATATGGACACCATGGCACTGGTGTGAAAGGCAGCTCTGAGGCTTGCTTCTaGACCTCTCTCGAGTGTTTC +
Preference number: 4 (lower is better)
Translates to: DQQQAQLYGHHGTGVKGSSEACF*TSLECF
Trigger: GAAACACTCGAGAGAGGTGCAGAAGCAAGCCTCAGA...GCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp CCTAAAACAGTCATCCTCAGTAGATGTCCTTGGGACCCAGACACCTTACAGACTTGCCACTGTTCTCTTTaGTGCTGGTCCCACTGGACT +
Preference number: 4 (lower is better)
Translates to: PKTVILSRCPWDPDTLQTCHCSL*CWSHWT
Trigger: AGTCCAGTGGGACCAGCAGCAAAGAGAACAGTGGCA...AGTCTGTAAGGTGTCTGGGTCCCAAGGACATCTACTGAGGATGACTGTTTTAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp CCTAAAACAGTCATCCTCAGTAGATGTCCTTGGGACCCAGACACCTTACAGACTAGTCTCGTCCTGGGGTaGCAGAGCTCGTTTCTTTTG +
Preference number: 4 (lower is better)
Translates to: PKTVILSRCPWDPDTLQTSLVLG*QSSFLL
Trigger: CAAAAGAAACGAGCTCTGCCACCCCAGGACGAGACT...AGTCTGTAAGGTGTCTGGGTCCCAAGGACATCTACTGAGGATGACTGTTTTAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
3UTR CAA 72 bp CCTTCACTGCTATGCGCACCTTGCGGGAACAGTAGTTaGATAAGGAACTGTTACAGAGCTGGCTTCCTAAGC +
Preference number: 4 (lower is better)
Translates to: PSLLCAPCGNSS*IRNCYRAGFLS
Trigger: GCTTAGGAAGCCAGCTCTGTAACAGTTCCTTATCAAACTACTGTTCCCGCAAGGTGCGCATAGCAGTGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGGAAGGTGGGAAAGACTaGCTTGAATGTTGCCCACTT +
Preference number: 4 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTEGGKD*LECCPL
Trigger: AAGTGGGCAACATTCAAGTCAGTCTTTCCCACCTTC...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGTGTCATCAGGCTCACTaGGTGGGGAAAGGAGCTCCT +
Preference number: 4 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPCHQAH*VGKGAP
Trigger: AGGAGCTCCTTTCCCCACTCAGTGAGCCTGATGACA...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp GAGACTGCAGGACAAAGTTCACTATCTTCAGAAACAGGTGGTGAAGGAGTCAGAGCCTTTTCTGAGGCTTaGTTCTGCACCTCTCTCGAG +
Preference number: 4 (lower is better)
Translates to: ETAGQSSLSSETGGEGVRAFSEA*FCTSLE
Trigger: CTCGAGAGAGGTGCAGAAGCAAGCCTCAGAAAAGGC...TCTGACTCCTTCACCACCTGTTTCTGAAGATAGTGAACTTTGTCCTGCAGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp GAGACTGCAGGACAAAGTTCACTATCTTCAGAAACAGGTGGTGAAGGAGTCAGATGCTCTTGCTGCTGCTaGCACTGTTCTCTTTGCTGC +
Preference number: 4 (lower is better)
Translates to: ETAGQSSLSSETGGEGVRCSCCC*HCSLCC
Trigger: GCAGCAAAGAGAACAGTGGCAGCAGCAGCAAGAGCA...TCTGACTCCTTCACCACCTGTTTCTGAAGATAGTGAACTTTGTCCTGCAGTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGAGGAGGAGCTGCTCTTaGTGCTGCTGCCACTGTTCT +
Preference number: 4 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPRRSCS*CCCHCS
Trigger: AGAACAGTGGCAGCAGCAGCAAGAGCAGCTCCTCCT...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp CTTCCTAAGCCCTGTCTCTATCATCTCCCCCTTTCCAAGAAAGCTCACAATGAGTGTGAGTCTCTTGTCTaGAGCTGTAGCATCTGGTGC +
Preference number: 4 (lower is better)
Translates to: LPKPCLYHLPLSKKAHNECESLV*SCSIWC
Trigger: GCACCAGATGCTACAGCTGCAGACAAGAGACTCACA...CTCATTGTGAGCTTTCTTGGAAAGGGGGAGATGATAGAGACAGGGCTTAGGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp ACCGCTGGCCTAGTCAGTGCGTCTTCCCAGACCTTCTCAGTATTTTTCCTACTGAACCTGGACATAGCTTaGTGCCATCTGGTGGATTTT +
Preference number: 4 (lower is better)
Translates to: TAGLVSASSQTFSVFFLLNLDIA*CHLVDF
Trigger: AAAATCCACCAGATGGCAGCAAGCTATGTCCAGGTT...CAGTAGGAAAAATACTGAGAAGGTCTGGGAAGACGCACTGACTAGGCCAGCGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGGGTCCCGAGGTGATTTaGAGCGCTGATGTTCCTTGC +
Preference number: 4 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPGPEVI*SADVPC
Trigger: GCAAGGAACATCAGCGCTCCAAATCACCTCGGGACC...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp GATCAGCAACAAGCTCAACTATATGGACACCATGGCACTGGTGTGAAAGGCAGCGGTCAATCTTCACAATaGGTGGATACCTGTCATCAG +
Preference number: 4 (lower is better)
Translates to: DQQQAQLYGHHGTGVKGSGQSSQ*VDTCHQ
Trigger: CTGATGACAGGTATCCACTCATTGTGAAGATTGACC...GCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp GATCAGCAACAAGCTCAACTATATGGACACCATGGCACTGGTGTGAAAGGCAGCGGGGGAGGCCATGAATaGGTCATCTCTTTAAGTATT +
Preference number: 4 (lower is better)
Translates to: DQQQAQLYGHHGTGVKGSGGGHE*VISLSI
Trigger: AATACTTAAAGAGATGACGCATTCATGGCCTCCCCC...GCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp GAGACTGCAGGACAAAGTTCACTATCTTCAGAAACAGGTGGTGAAGGAGTCAGAATCCCTGGAGTTGTCTaGTCCCTCACTGTTATGGTG +
Preference number: 4 (lower is better)
Translates to: ETAGQSSLSSETGGEGVRIPGVV*SLTVMV
Trigger: CACCATAACAGTGAGGGAGCAGACAACTCCAGGGAT...TCTGACTCCTTCACCACCTGTTTCTGAAGATAGTGAACTTTGTCCTGCAGTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp CTTCCTAAGCCCTGTCTCTATCATCTCCCCCTTTCCAAGAAAGCTCACAATGAGGTACTTCTTCTTCTCTaGCGTAGGTCGAGGAGAAGA +
Preference number: 4 (lower is better)
Translates to: LPKPCLYHLPLSKKAHNEVLLLL*RRSRRR
Trigger: TCTTCTCCTCGACCTACGGCAGAGAAGAAGAAGTAC...CTCATTGTGAGCTTTCTTGGAAAGGGGGAGATGATAGAGACAGGGCTTAGGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp AGAGTGAGAGAGAAGAGGCAAGGACAGGACACACAGCTGTTAGACCATGGAGGTAGTAACTTCCAGAATTaGCTGGTGACAGTTTTGGAG +
Preference number: 4 (lower is better)
Translates to: RVREKRQGQDTQLLDHGGSNFQN*LVTVLE
Trigger: CTCCAAAACTGTCACCAGGCAATTCTGGAAGTTACT...ACCTCCATGGTCTAACAGCTGTGTGTCCTGTCCTTGCCTCTTCTCTCTCACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp CCTAAAACAGTCATCCTCAGTAGATGTCCTTGGGACCCAGACACCTTACAGACTCTGGACATAGCTTGCTaGCATCTGGTGGATTTTCTG +
Preference number: 4 (lower is better)
Translates to: PKTVILSRCPWDPDTLQTLDIAC*HLVDFL
Trigger: CAGAAAATCCACCAGATGGCAGCAAGCTATGTCCAG...AGTCTGTAAGGTGTCTGGGTCCCAAGGACATCTACTGAGGATGACTGTTTTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp CCTAAAACAGTCATCCTCAGTAGATGTCCTTGGGACCCAGACACCTTACAGACTAATGAAGAAACAGCCTaGGGTTTTCCAGGGCTTGAG +
Preference number: 4 (lower is better)
Translates to: PKTVILSRCPWDPDTLQTNEETA*GFPGLE
Trigger: CTCAAGCCCTGGAAAACCCCAGGCTGTTTCTTCATT...AGTCTGTAAGGTGTCTGGGTCCCAAGGACATCTACTGAGGATGACTGTTTTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGGTCTACAGAGGAAGCTaGGGATACTTTATGTGGGTT +
Preference number: 4 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTVYRGS*GYFMWV
Trigger: AACCCACATAAAGTATCCCCAGCTTCCTCTGTAGAC...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGTTTAGAGTCTCGTCCTaGGGTGGCAGAGCTCGTTTC +
Preference number: 4 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPFRVSS*GGRARF
Trigger: GAAACGAGCTCTGCCACCCCAGGACGAGACTCTAAA...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp AAATTAATTTTCTCCACATTAGACATTGGGACACCTCCTTTCAAGCTCCAGTTCCTGCTTTGTGCCTGCTaGAGGGCATGCTGGCAGCCA +
Preference number: 4 (lower is better)
Translates to: KLIFSTLDIGTPPFKLQFLLCAC*RACWQP
Trigger: TGGCTGCCAGCATGCCCTCCAGCAGGCACAAAGCAG...GAACTGGAGCTTGAAAGGAGGTGTCCCAATGTCTAATGTGGAGAAAATTAATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGATGACTCTCTGCTGCTaGATGGCTTGTGGCCTGATG +
Preference number: 4 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPMTLCC*MACGLM
Trigger: CATCAGGCCACAAGCCATCCAGCAGCAGAGAGTCAT...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp AGAGTGAGAGAGAAGAGGCAAGGACAGGACACACAGCTGTTAGACCATGGAGGTTCGAGGAGAAGATTTTaGTTCCTTTTTGATGTTGGG +
Preference number: 4 (lower is better)
Translates to: RVREKRQGQDTQLLDHGGSRRRF*FLFDVG
Trigger: CCCAACATCAAAAAGGAATCAAAATCTTCTCCTCGA...ACCTCCATGGTCTAACAGCTGTGTGTCCTGTCCTTGCCTCTTCTCTCTCACTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGTCTCCTTCTTCAGTTTaGACAGCCTCAGGTACAATA +
Preference number: 4 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTSPSSV*TASGTI
Trigger: TATTGTACCTGAGGCTGTTCAAACTGAAGAAGGAGA...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGTGTGGTCGTTGGTACTaGAGGCTTGGGAATTGCAAC +
Preference number: 4 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPCGRWY*RLGNCN
Trigger: GTTGCAATTCCCAAGCCTGCAGTACCAACGACCACA...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp CTTTCTCCCAGGGTCTCTCTGTGTAGAGCATGCTGGTCTCAAACTGACAGTCCATCTTTTGTACTACTCTaGTTAGATGACTCTCTGCTG +
Preference number: 4 (lower is better)
Translates to: LSPRVSLCRACWSQTDSPSFVLL*LDDSLL
Trigger: CAGCAGAGAGTCATCTAAGCAGAGTAGTACAAAAGA...TGGACTGTCAGTTTGAGACCAGCATGCTCTACACAGAGAGACCCTGGGAGAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp AAATTAATTTTCTCCACATTAGACATTGGGACACCTCCTTTCAAGCTCCAGTTCCCTCCTTGGAGCTGCTaGGACCCTTGCCTTCAGTCT +
Preference number: 4 (lower is better)
Translates to: KLIFSTLDIGTPPFKLQFPPWSC*DPCLQS
Trigger: AGACTGAAGGCAAGGGTCCCAGCAGCTCCAAGGAGG...GAACTGGAGCTTGAAAGGAGGTGTCCCAATGTCTAATGTGGAGAAAATTAATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp GATCAGCAACAAGCTCAACTATATGGACACCATGGCACTGGTGTGAAAGGCAGCATTTTGATTCCTTTTTaGTGTTGGGTTTCCTCGAGC +
Preference number: 4 (lower is better)
Translates to: DQQQAQLYGHHGTGVKGSILIPF*CWVSSS
Trigger: GCTCGAGGAAACCCAACATCAAAAAGGAATCAAAAT...GCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp AAATTAATTTTCTCCACATTAGACATTGGGACACCTCCTTTCAAGCTCCAGTTCGAGCTCCACCGTGTCTaGGTACATAGGGAATGGGGA +
Preference number: 4 (lower is better)
Translates to: KLIFSTLDIGTPPFKLQFELHRV*VHREWG
Trigger: TCCCCATTCCCTATGTACTCAGACACGGTGGAGCTC...GAACTGGAGCTTGAAAGGAGGTGTCCCAATGTCTAATGTGGAGAAAATTAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp GAGACTGCAGGACAAAGTTCACTATCTTCAGAAACAGGTGGTGAAGGAGTCAGATGCAGGCTTGGGAATTaGAACAAGCTTTGGTATCGA +
Preference number: 4 (lower is better)
Translates to: ETAGQSSLSSETGGEGVRCRLGN*NKLWYR
Trigger: TCGATACCAAAGCTTGTTGCAATTCCCAAGCCTGCA...TCTGACTCCTTCACCACCTGTTTCTGAAGATAGTGAACTTTGTCCTGCAGTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp TTCAGCAGCTCTGTGACTTTATTTGAAGCACTTACAGATAATAAAGTGACTTCACACCACTCCGTTGGCTaGTGTGTCCACTCTGCAGGG +
Preference number: 4 (lower is better)
Translates to: FSSSVTLFEALTDNKVTSHHSVG*CVHSAG
Trigger: CCCTGCAGAGTGGACACAGCAGCCAACGGAGTGGTG...TGAAGTCACTTTATTATCTGTAAGTGCTTCAAATAAAGTCACAGAGCTGCTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp AAATTAATTTTCTCCACATTAGACATTGGGACACCTCCTTTCAAGCTCCAGTTCGATCGAGATTTGGAGTaGTCTGAGCCGTGCTGGCCT +
Preference number: 4 (lower is better)
Translates to: KLIFSTLDIGTPPFKLQFDRDLE*SEPCWP
Trigger: AGGCCAGCACGGCTCAGAGCACTCCAAATCTCGATC...GAACTGGAGCTTGAAAGGAGGTGTCCCAATGTCTAATGTGGAGAAAATTAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp GAGACTGCAGGACAAAGTTCACTATCTTCAGAAACAGGTGGTGAAGGAGTCAGAGCTCCCTCACTGTTATaGTGTGAAGGTTCAGAGTTA +
Preference number: 4 (lower is better)
Translates to: ETAGQSSLSSETGGEGVRAPSLL*CEGSEL
Trigger: TAACTCTGAACCTTCACACCATAACAGTGAGGGAGC...TCTGACTCCTTCACCACCTGTTTCTGAAGATAGTGAACTTTGTCCTGCAGTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp CCTAAAACAGTCATCCTCAGTAGATGTCCTTGGGACCCAGACACCTTACAGACTAATCTTCACAATGAGTaGATACCTGTCATCAGGCTC +
Preference number: 4 (lower is better)
Translates to: PKTVILSRCPWDPDTLQTNLHNE*IPVIRL
Trigger: GAGCCTGATGACAGGTATCCACTCATTGTGAAGATT...AGTCTGTAAGGTGTCTGGGTCCCAAGGACATCTACTGAGGATGACTGTTTTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGCTTTTCCCCCTTGGGTaGCTCTGTTTCTTTGTAAGG +
Preference number: 4 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPLFPLG*LCFFVR
Trigger: CCTTACAAAGAAACAGAGCCACCCAAGGGGGAAAAG...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp CTTCCTAAGCCCTGTCTCTATCATCTCCCCCTTTCCAAGAAAGCTCACAATGAGTTTCCAAGCATGCTCTaGATCCGACTTGATAACTTA +
Preference number: 4 (lower is better)
Translates to: LPKPCLYHLPLSKKAHNEFPSML*IRLDNL
Trigger: TAAGTTATCAAGTCGGATTCAGAGCATGCTTGGAAA...CTCATTGTGAGCTTTCTTGGAAAGGGGGAGATGATAGAGACAGGGCTTAGGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGTTTCCCTTTCTTTCATaGGCAGCACATTCCGGTCTT +
Preference number: 4 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPFPFLS*AAHSGL
Trigger: AAGACCGGAATGTGCTGCGCATGAAAGAAAGGGAAA...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp TCTTCCCAGACCTTCTCAGTATTTTTCCTACTGATTTTACTCATAGCAACACTAAAGGAGAATCCCAGTTaGCATCAGGGTCCCGAGGTG +
Preference number: 4 (lower is better)
Translates to: SSQTFSVFFLLILLIATLKENPS*HQGPEV
Trigger: CACCTCGGGACCCTGATGCCAACTGGGATTCTCCTT...TAGTGTTGCTATGAGTAAAATCAGTAGGAAAAATACTGAGAAGGTCTGGGAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp TCTTCCCAGACCTTCTCAGTATTTTTCCTACTGATTTTACTCATAGCAACACTAAGGTGTCAGTCTCTATaGTCTCCCGAGACTTCTGGG +
Preference number: 4 (lower is better)
Translates to: SSQTFSVFFLLILLIATLRCQSL*SPETSG
Trigger: CCCAGAAGTCTCGGGAGATCATAGAGACTGACACCT...TAGTGTTGCTATGAGTAAAATCAGTAGGAAAAATACTGAGAAGGTCTGGGAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGCATTCCCACACTCAATaGAAGACACTACAGCATCAA +
Preference number: 4 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPHSHTQ*KTLQHQ
Trigger: TTGATGCTGTAGTGTCTTTCATTGAGTGTGGGAATG...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp CTTCCTAAGCCCTGTCTCTATCATCTCCCCCTTTCCAAGAAAGCTCACAATGAGCACTGTCTTCACTGCTaGTTAGTTTTAAGTCATCTT +
Preference number: 4 (lower is better)
Translates to: LPKPCLYHLPLSKKAHNEHCLHC*LVLSHL
Trigger: AAGATGACTTAAAACTAAGCAGCAGTGAAGACAGTG...CTCATTGTGAGCTTTCTTGGAAAGGGGGAGATGATAGAGACAGGGCTTAGGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp CTTCCTAAGCCCTGTCTCTATCATCTCCCCCTTTCCAAGAAAGCTCACAATGAGAATTGCAACAAGCTTTaGTATCGATCTGTCTCCTAT +
Preference number: 4 (lower is better)
Translates to: LPKPCLYHLPLSKKAHNENCNKL*YRSVSY
Trigger: ATAGGAGACAGATCGATACCAAAGCTTGTTGCAATT...CTCATTGTGAGCTTTCTTGGAAAGGGGGAGATGATAGAGACAGGGCTTAGGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp AAATTAATTTTCTCCACATTAGACATTGGGACACCTCCTTTCAAGCTCCAGTTCCCACTTGTTTGTTGGTaGTGGTTCAGGCTCAGGAGA +
Preference number: 4 (lower is better)
Translates to: KLIFSTLDIGTPPFKLQFPLVCW*WFRLRR
Trigger: TCTCCTGAGCCTGAACCACCACCAACAAACAAGTGG...GAACTGGAGCTTGAAAGGAGGTGTCCCAATGTCTAATGTGGAGAAAATTAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp CTTCCTAAGCCCTGTCTCTATCATCTCCCCCTTTCCAAGAAAGCTCACAATGAGTGGGGATACTTTATGTaGGTTCACTTTATTCAACCA +
Preference number: 4 (lower is better)
Translates to: LPKPCLYHLPLSKKAHNEWGYFM*VHFIQP
Trigger: TGGTTGAATAAAGTGAACCCACATAAAGTATCCCCA...CTCATTGTGAGCTTTCTTGGAAAGGGGGAGATGATAGAGACAGGGCTTAGGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGAATCTTTTGAAAGAATaGGCCCAGCAGGTGAAGGTA +
Preference number: 4 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPNLLKE*AQQVKV
Trigger: TACCTTCACCTGCTGGGCCCATTCTTTCAAAAGATT...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp TTCAGCAGCTCTGTGACTTTATTTGAAGCACTTACAGATAATAAAGTGACTTCAGTTGGAAGCCTTTTCTaGGGCTTGCTTCTGCACCTC +
Preference number: 4 (lower is better)
Translates to: FSSSVTLFEALTDNKVTSVGSLF*GLLLHL
Trigger: GAGGTGCAGAAGCAAGCCTCAGAAAAGGCTTCCAAC...TGAAGTCACTTTATTATCTGTAAGTGCTTCAAATAAAGTCACAGAGCTGCTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGTCTTGTGTTTCCTCTTaGCTTTGTTGGAAGCCTTTT +
Preference number: 4 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPSCVSS*LCWKPF
Trigger: AAAAGGCTTCCAACAAAGGCAAGAGGAAACACAAGA...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp TTCAGCAGCTCTGTGACTTTATTTGAAGCACTTACAGATAATAAAGTGACTTCAAGGAGCTGCTCTTGCTaGTGCTGCCACTGTTCTCTT +
Preference number: 4 (lower is better)
Translates to: FSSSVTLFEALTDNKVTSRSCSC*CCHCSL
Trigger: AAGAGAACAGTGGCAGCAGCAGCAAGAGCAGCTCCT...TGAAGTCACTTTATTATCTGTAAGTGCTTCAAATAAAGTCACAGAGCTGCTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGCTTTCTGATCCCTTTTaGATGGTTTTAGAGTCTCGT +
Preference number: 4 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPLSDPF*MVLESR
Trigger: ACGAGACTCTAAAACCATCCAAAAGGGATCAGAAAG...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR TCA 90 bp TCTTCCCAGACCTTCTCAGTATTTTTCCTACTGATTTTACTCATAGCAACACTATCCAGAATTGCCTGGTaGCAGTTTTGGAGAAACAGG +
Preference number: 4 (lower is better)
Translates to: SSQTFSVFFLLILLIATLSRIAW*QFWRNR
Trigger: CCTGTTTCTCCAAAACTGTCACCAGGCAATTCTGGA...TAGTGTTGCTATGAGTAAAATCAGTAGGAAAAATACTGAGAAGGTCTGGGAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp AAATTAATTTTCTCCACATTAGACATTGGGACACCTCCTTTCAAGCTCCAGTTCTTGGTACTGCAGGCTTaGGAATTGCAACAAGCTTTG +
Preference number: 4 (lower is better)
Translates to: KLIFSTLDIGTPPFKLQFLVLQA*ELQQAL
Trigger: CAAAGCTTGTTGCAATTCCCAAGCCTGCAGTACCAA...GAACTGGAGCTTGAAAGGAGGTGTCCCAATGTCTAATGTGGAGAAAATTAATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp TCTTCCCAGACCTTCTCAGTATTTTTCCTACTGATTTTACTCATAGCAACACTACTTGCTGCCATCTGGTaGATTTTCTGTGGAATGGTC +
Preference number: 4 (lower is better)
Translates to: SSQTFSVFFLLILLIATLLAAIW*IFCGMV
Trigger: GACCATTCCACAGAAAATCCACCAGATGGCAGCAAG...TAGTGTTGCTATGAGTAAAATCAGTAGGAAAAATACTGAGAAGGTCTGGGAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp TCTTCCCAGACCTTCTCAGTATTTTTCCTACTGATTTTACTCATAGCAACACTACTACAGGAGTCCATTTaGTACTCTGATGAGATCCTC +
Preference number: 4 (lower is better)
Translates to: SSQTFSVFFLLILLIATLLQESI*YSDEIL
Trigger: GAGGATCTCATCAGAGTAGCAAATGGACTCCTGTAG...TAGTGTTGCTATGAGTAAAATCAGTAGGAAAAATACTGAGAAGGTCTGGGAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp TTCAGCAGCTCTGTGACTTTATTTGAAGCACTTACAGATAATAAAGTGACTTCAGCTTCAGCTCAGTCATaGTATTACCATGAGACTGGC +
Preference number: 4 (lower is better)
Translates to: FSSSVTLFEALTDNKVTSASAQS*YYHETG
Trigger: GCCAGTCTCATGGTAATAGCATGACTGAGCTGAAGC...TGAAGTCACTTTATTATCTGTAAGTGCTTCAAATAAAGTCACAGAGCTGCTGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp TTCAGCAGCTCTGTGACTTTATTTGAAGCACTTACAGATAATAAAGTGACTTCACGAAGACTCAGAAGTTaGTGTAGACGGAGGACAATT +
Preference number: 4 (lower is better)
Translates to: FSSSVTLFEALTDNKVTSRRLRS*CRRRTI
Trigger: AATTGTCCTCCGTCTACACCAACTTCTGAGTCTTCG...TGAAGTCACTTTATTATCTGTAAGTGCTTCAAATAAAGTCACAGAGCTGCTGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp TTCAGCAGCTCTGTGACTTTATTTGAAGCACTTACAGATAATAAAGTGACTTCATTGCGACTCCTTAGTTaGAAAAGGGAATTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: FSSSVTLFEALTDNKVTSLRLLS*KREFGR
Trigger: CCTTCCAAATTCCCTTTTCCAACTAAGGAGTCGCAA...TGAAGTCACTTTATTATCTGTAAGTGCTTCAAATAAAGTCACAGAGCTGCTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp TTCAGCAGCTCTGTGACTTTATTTGAAGCACTTACAGATAATAAAGTGACTTCATTCAGAGTTACTTCCTaGTGTACTCCTTGGCATTGT +
Preference number: 4 (lower is better)
Translates to: FSSSVTLFEALTDNKVTSFRVTS*CTPWHC
Trigger: ACAATGCCAAGGAGTACACCAGGAAGTAACTCTGAA...TGAAGTCACTTTATTATCTGTAAGTGCTTCAAATAAAGTCACAGAGCTGCTGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CCA 90 bp TTCAGCAGCTCTGTGACTTTATTTGAAGCACTTACAGATAATAAAGTGACTTCAGGATTTTCTGTGGAATaGTCACTGAAGAACCACTTG +
Preference number: 4 (lower is better)
Translates to: FSSSVTLFEALTDNKVTSGFSVE*SLKNHL
Trigger: CAAGTGGTTCTTCAGTGACCATTCCACAGAAAATCC...TGAAGTCACTTTATTATCTGTAAGTGCTTCAAATAAAGTCACAGAGCTGCTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR GCA 90 bp TCTTCCCAGACCTTCTCAGTATTTTTCCTACTGATTTTACTCATAGCAACACTACTCTTCCGAGAACCATaGTCTGTTTTTGAATCTTTT +
Preference number: 4 (lower is better)
Translates to: SSQTFSVFFLLILLIATLLFREP*SVFESF
Trigger: AAAAGATTCAAAAACAGAGCATGGTTCTCGGAAGAG...TAGTGTTGCTATGAGTAAAATCAGTAGGAAAAATACTGAGAAGGTCTGGGAAGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS GCA 90 bp TTTTCCTGCTACTGCTGTAGGAGTCACGGTCATGCCTCTGGCCACTaGTGCTGGCGCCACTCCCTCCTGCACCACTCCGTTGGCTGCTGT +
Preference number: 5 (lower is better)
Translates to: FSCYCCRSHGHASGH*CWRHSLLHHSVGCC
Trigger: ACAGCAGCCAACGGAGTGGTGCAGGAGGGAGTGGCGCCAGCAGCAGTGGCCAGAGGCATGACCGTGACTCCTACAGCAGTAGCAGGAAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CCA 90 bp GTCCACTCTGCAGGGCAGAGGAGCGTTTCTGAGACTGAGAGGTGCTaGGGGCGGGGCCTACAGGAGTCCATTTGCTACTCTGATGAGATC +
Preference number: 5 (lower is better)
Translates to: VHSAGQRSVSETERC*GRGLQESICYSDEI
Trigger: GATCTCATCAGAGTAGCAAATGGACTCCTGTAGGCCCCGCCCCCAGCACCTCTCAGTCTCAGAAACGCTCCTCTGCCCTGCAGAGTGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS GCA 90 bp TATTTGGAGCCTTCTCCTTGGCCTCCTTGGAGCTGCTGGGACCCTTaGCTTCAGTCTTCTTCTGCTTCGCTGTGGAGGAGGAGCTGCTCT +
Preference number: 5 (lower is better)
Translates to: YLEPSPWPPWSCWDP*LQSSSASLWRRSCS
Trigger: AGAGCAGCTCCTCCTCCACAGCGAAGCAGAAGAAGACTGAAGGCAAGGGTCCCAGCAGCTCCAAGGAGGCCAAGGAGAAGGCTCCAAATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS GCA 90 bp CAGTCTTCTTCTGCTTCGCTGTGGAGGAGGAGCTGCTCTTGCTGCTaGTGCCACTGTTCTCTTTGCTGCTGGTCCCACTGGACTTTAAGG +
Preference number: 5 (lower is better)
Translates to: QSSSASLWRRSCSCC*CHCSLCCWSHWTLR
Trigger: CCTTAAAGTCCAGTGGGACCAGCAGCAAAGAGAACAGTGGCAGCAGCAGCAAGAGCAGCTCCTCCTCCACAGCGAAGCAGAAGAAGACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp ACCGCTGGCCTAGTCAGTGCGTCTTCCCAGACCTTCTCAGTATTTTTCCTACTGGGTTTCCTCGAGCCCTaGGTGGCTGCTTTGTGCCTG +
Preference number: 5 (lower is better)
Translates to: TAGLVSASSQTFSVFFLLGFLEP*VAALCL
Trigger: CAGGCACAAAGCAGCCACCAAGGGCTCGAGGAAACC...CAGTAGGAAAAATACTGAGAAGGTCTGGGAAGACGCACTGACTAGGCCAGCGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CCA 90 bp ACCCAGAGCTGCTCTCAGATCCACTGTGGCTGCTCGAGTCATCCCTaGAGTTGTCTGCTCCCTCACTGTTATGGTGTGAAGGTTCAGAGT +
Preference number: 5 (lower is better)
Translates to: TQSCSQIHCGCSSHP*SCLLPHCYGVKVQS
Trigger: ACTCTGAACCTTCACACCATAACAGTGAGGGAGCAGACAACTCCAGGGATGACTCGAGCAGCCACAGTGGATCTGAGAGCAGCTCTGGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060945.12
ENSMUST00000152616.3
CDS CCA 90 bp AGACTCAGAAGTTGGTGTAGACGGAGGACAATTAGAGGAGCTATTTaGAGCCTTCTCCTTGGCCTCCTTGGAGCTGCTGGGACCCTTGCC +
Preference number: 5 (lower is better)
Translates to: RLRSWCRRRTIRGAI*SLLLGLLGAAGTLA
Trigger: GGCAAGGGTCCCAGCAGCTCCAAGGAGGCCAAGGAGAAGGCTCCAAATAGCTCCTCTAATTGTCCTCCGTCTACACCAACTTCTGAGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CCA 90 bp GGCAGTGCCCTGCTCCCGGCCTTCTTTCTTGTAGGCTTGAGAAGATaGGATGTTGCTGTCTACAGAGGAAGCTGGGGATACTTTATGTGG +
Preference number: 5 (lower is better)
Translates to: GSALLPAFFLVGLRR*DVAVYRGSWGYFMW
Trigger: CCACATAAAGTATCCCCAGCTTCCTCTGTAGACAGCAACATCCCATCTTCTCAAGCCTACAAGAAAGAAGGCCGGGAGCAGGGCACTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp AGAGTGAGAGAGAAGAGGCAAGGACAGGACACACAGCTGTTAGACCATGGAGGTCTGCTGCTGGATGGCTaGTGGCCTGATGAGTTCTTG +
Preference number: 5 (lower is better)
Translates to: RVREKRQGQDTQLLDHGGLLLDG*WPDEFL
Trigger: CAAGAACTCATCAGGCCACAAGCCATCCAGCAGCAG...ACCTCCATGGTCTAACAGCTGTGTGTCCTGTCCTTGCCTCTTCTCTCTCACTCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp CCTAAAACAGTCATCCTCAGTAGATGTCCTTGGGACCCAGACACCTTACAGACTGAAGGAGAATCCCAGTaGGCATCAGGGTCCCGAGGT +
Preference number: 5 (lower is better)
Translates to: PKTVILSRCPWDPDTLQTEGESQ*ASGSRG
Trigger: ACCTCGGGACCCTGATGCCAACTGGGATTCTCCTTC...AGTCTGTAAGGTGTCTGGGTCCCAAGGACATCTACTGAGGATGACTGTTTTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp CCTAAAACAGTCATCCTCAGTAGATGTCCTTGGGACCCAGACACCTTACAGACTGAGCTGCTGGGACCCTaGCCTTCAGTCTTCTTCTGC +
Preference number: 5 (lower is better)
Translates to: PKTVILSRCPWDPDTLQTELLGP*PSVFFC
Trigger: GCAGAAGAAGACTGAAGGCAAGGGTCCCAGCAGCTC...AGTCTGTAAGGTGTCTGGGTCCCAAGGACATCTACTGAGGATGACTGTTTTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CCA 90 bp TGGCTGCTCGAGTCATCCCTGGAGTTGTCTGCTCCCTCACTGTTATaGTGTGAAGGTTCAGAGTTACTTCCTGGTGTACTCCTTGGCATT +
Preference number: 5 (lower is better)
Translates to: WLLESSLELSAPSLL*CEGSELLPGVLLGI
Trigger: AATGCCAAGGAGTACACCAGGAAGTAACTCTGAACCTTCACACCATAACAGTGAGGGAGCAGACAACTCCAGGGATGACTCGAGCAGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060945.12
ENSMUST00000152616.3
CDS-3UTR CAA 90 bp CTTCCTAAGCCCTGTCTCTATCATCTCCCCCTTTCCAAGAAAGCTCACAATGAGCTTGAGGATCGAGATTaGGAGTGCTCTGAGCCGTGC +
Preference number: 5 (lower is better)
Translates to: LPKPCLYHLPLSKKAHNELEDRD*ECSEPC
Trigger: GCACGGCTCAGAGCACTCCAAATCTCGATCCTCAAG...CTCATTGTGAGCTTTCTTGGAAAGGGGGAGATGATAGAGACAGGGCTTAGGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGTCCACTGAGGAGGGTTaGACAGGAGTCCTGTTGCTT +
Preference number: 5 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTSTEEG*TGVLLL
Trigger: AAGCAACAGGACTCCTGTCAAACCCTCCTCAGTGGA...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp AGAGTGAGAGAGAAGAGGCAAGGACAGGACACACAGCTGTTAGACCATGGAGGTGGAAAGCTGTTCAGCTaGGTCCCAAATTTCTGTGGC +
Preference number: 5 (lower is better)
Translates to: RVREKRQGQDTQLLDHGGGKLFS*VPNFCG
Trigger: GCCACAGAAATTTGGGACCAAGCTGAACAGCTTTCC...ACCTCCATGGTCTAACAGCTGTGTGTCCTGTCCTTGCCTCTTCTCTCTCACTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS GCA 90 bp ATGCAGTCCCTGCCGGGTGTAACGAGCCAGATCTGTCATGATGCTTaGATTAAAGATGAGAGGGCCCATCACTTTGTCCAGTTCAGCAAA +
Preference number: 5 (lower is better)
Translates to: MQSLPGVTSQICHDA*IKDERAHHFVQFSK
Trigger: TTTGCTGAACTGGACAAAGTGATGGGCCCTCTCATCTTTAATGCAAGCATCATGACAGATCTGGCTCGTTACACCCGGCAGGGACTGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp GATCAGCAACAAGCTCAACTATATGGACACCATGGCACTGGTGTGAAAGGCAGCTCACTGAAGAACCACTaGCTGAAGCACTACTTCCCC +
Preference number: 5 (lower is better)
Translates to: DQQQAQLYGHHGTGVKGSSLKNH*LKHYFP
Trigger: GGGGAAGTAGTGCTTCAGCAAGTGGTTCTTCAGTGA...GCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS TCA 90 bp GTCAGTCTCTATGATCTCCCGAGACTTCTGGGACGGTTTACTGGCTaGCTTGTACTTCTTCTTCTCTGCCGTAGGTCGAGGAGAAGATTT +
Preference number: 5 (lower is better)
Translates to: VSLYDLPRLLGRFTG*LVLLLLCRRSRRRF
Trigger: AAATCTTCTCCTCGACCTACGGCAGAGAAGAAGAAGTACAAGTCAGCCAGTAAACCGTCCCAGAAGTCTCGGGAGATCATAGAGACTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS TCA 90 bp CTGTTCTCTTTGCTGCTGGTCCCACTGGACTTTAAGGACGACGACTaGCTGACAGTCCTCTTCCGAGAACCATGCTCTGTTTTTGAATCT +
Preference number: 5 (lower is better)
Translates to: LFSLLLVPLDFKDDD*LTVLFREPCSVFES
Trigger: AGATTCAAAAACAGAGCATGGTTCTCGGAAGAGGACTGTCAGTCAGTCGTCGTCCTTAAAGTCCAGTGGGACCAGCAGCAAAGAGAACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGGTTGGTACTGCAGGCTaGGGAATTGCAACAAGCTTT +
Preference number: 5 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTVGTAG*GIATSF
Trigger: AAAGCTTGTTGCAATTCCCAAGCCTGCAGTACCAAC...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp GAGACTGCAGGACAAAGTTCACTATCTTCAGAAACAGGTGGTGAAGGAGTCAGAGAGTCATCCCTGGAGTaGTCTGCTCCCTCACTGTTA +
Preference number: 5 (lower is better)
Translates to: ETAGQSSLSSETGGEGVRESSLE*SAPSLL
Trigger: TAACAGTGAGGGAGCAGACAACTCCAGGGATGACTC...TCTGACTCCTTCACCACCTGTTTCTGAAGATAGTGAACTTTGTCCTGCAGTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp CTTCCTAAGCCCTGTCTCTATCATCTCCCCCTTTCCAAGAAAGCTCACAATGAGCAAGTTGCCACTTGTTaGTTGGTGGTGGTTCAGGCT +
Preference number: 5 (lower is better)
Translates to: LPKPCLYHLPLSKKAHNEQVATC*LVVVQA
Trigger: AGCCTGAACCACCACCAACAAACAAGTGGCAACTTG...CTCATTGTGAGCTTTCTTGGAAAGGGGGAGATGATAGAGACAGGGCTTAGGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGTTCCTCTTGCCTTTGTaGGAAGCCTTTTCTGAGGCT +
Preference number: 5 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTFLLPL*EAFSEA
Trigger: AGCCTCAGAAAAGGCTTCCAACAAAGGCAAGAGGAA...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS TCA 90 bp TCTCTTTGCTGCTGGTCCCACTGGACTTTAAGGACGACGACTGACTaGCAGTCCTCTTCCGAGAACCATGCTCTGTTTTTGAATCTTTTG +
Preference number: 5 (lower is better)
Translates to: SLCCWSHWTLRTTTD*QSSSENHALFLNLL
Trigger: CAAAAGATTCAAAAACAGAGCATGGTTCTCGGAAGAGGACTGTCAGTCAGTCGTCGTCCTTAAAGTCCAGTGGGACCAGCAGCAAAGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CCA 90 bp ATCAAAGGCAAGCTTTGTTCTCCGAGGCTTCGAAGACTCAGAAGTTaGTGTAGACGGAGGACAATTAGAGGAGCTATTTGGAGCCTTCTC +
Preference number: 5 (lower is better)
Translates to: IKGKLCSPRLRRLRS*CRRRTIRGAIWSLL
Trigger: GAGAAGGCTCCAAATAGCTCCTCTAATTGTCCTCCGTCTACACCAACTTCTGAGTCTTCGAAGCCTCGGAGAACAAAGCTTGCCTTTGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp AGAGTGAGAGAGAAGAGGCAAGGACAGGACACACAGCTGTTAGACCATGGAGGTGTGTACTCCTTGGCATaGTCTTATCACAATCCTGTT +
Preference number: 5 (lower is better)
Translates to: RVREKRQGQDTQLLDHGGVYSLA*SYHNPV
Trigger: AACAGGATTGTGATAAGACAATGCCAAGGAGTACAC...ACCTCCATGGTCTAACAGCTGTGTGTCCTGTCCTTGCCTCTTCTCTCTCACTCT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp CTTCCTAAGCCCTGTCTCTATCATCTCCCCCTTTCCAAGAAAGCTCACAATGAGTTGACAGGAGTCCTGTaGCTTTCAGGGTACTTAGGA +
Preference number: 5 (lower is better)
Translates to: LPKPCLYHLPLSKKAHNELTGVL*LSGYLG
Trigger: TCCTAAGTACCCTGAAAGCAACAGGACTCCTGTCAA...CTCATTGTGAGCTTTCTTGGAAAGGGGGAGATGATAGAGACAGGGCTTAGGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp CTTTCTCCCAGGGTCTCTCTGTGTAGAGCATGCTGGTCTCAAACTGACAGTCCACTGTTTTTGAATCTTTaGAAAGAATGGGCCCAGCAG +
Preference number: 5 (lower is better)
Translates to: LSPRVSLCRACWSQTDSPLFLNL*KEWAQQ
Trigger: CTGCTGGGCCCATTCTTTCAAAAGATTCAAAAACAG...TGGACTGTCAGTTTGAGACCAGCATGCTCTACACAGAGAGACCCTGGGAGAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp CTTTCTCCCAGGGTCTCTCTGTGTAGAGCATGCTGGTCTCAAACTGACAGTCCAGTTGGAAAAGGGAATTaGGAAGGTTCTGTTTTGCAT +
Preference number: 5 (lower is better)
Translates to: LSPRVSLCRACWSQTDSPVGKGN*EGSVLH
Trigger: ATGCAAAACAGAACCTTCCAAATTCCCTTTTCCAAC...TGGACTGTCAGTTTGAGACCAGCATGCTCTACACAGAGAGACCCTGGGAGAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp CTTTCTCCCAGGGTCTCTCTGTGTAGAGCATGCTGGTCTCAAACTGACAGTCCAAGTACTGTATCTTTTTaGTTCTCCAGGGCCAAAGTT +
Preference number: 5 (lower is better)
Translates to: LSPRVSLCRACWSQTDSPSTVSF*FSRAKV
Trigger: AACTTTGGCCCTGGAGAACAAAAAAGATACAGTACT...TGGACTGTCAGTTTGAGACCAGCATGCTCTACACAGAGAGACCCTGGGAGAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp CAGCACAGTCAAAACCAAGTATCATTAGGACTTCTGGGTGGGAGCTTGTCCACGTTATCAAGTTGCCACTaGTTTGTTGGTGGTGGTTCA +
Preference number: 5 (lower is better)
Translates to: QHSQNQVSLGLLGGSLSTLSSCH*FVGGGS
Trigger: TGAACCACCACCAACAAACAAGTGGCAACTTGATAA...CGTGGACAAGCTCCCACCCAGAAGTCCTAATGATACTTGGTTTTGACTGTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp TTCAGCAGCTCTGTGACTTTATTTGAAGCACTTACAGATAATAAAGTGACTTCACCCTTGGTGGCTGCTTaGTGCCTGCTGGAGGGCATG +
Preference number: 5 (lower is better)
Translates to: FSSSVTLFEALTDNKVTSPLVAA*CLLEGM
Trigger: CATGCCCTCCAGCAGGCACAAAGCAGCCACCAAGGG...TGAAGTCACTTTATTATCTGTAAGTGCTTCAAATAAAGTCACAGAGCTGCTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp TCTTCCCAGACCTTCTCAGTATTTTTCCTACTGATTTTACTCATAGCAACACTATTCTCCTTGGCCTCCTaGGAGCTGCTGGGACCCTTG +
Preference number: 5 (lower is better)
Translates to: SSQTFSVFFLLILLIATLFSLAS*ELLGPL
Trigger: CAAGGGTCCCAGCAGCTCCAAGGAGGCCAAGGAGAA...TAGTGTTGCTATGAGTAAAATCAGTAGGAAAAATACTGAGAAGGTCTGGGAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp GATCAGCAACAAGCTCAACTATATGGACACCATGGCACTGGTGTGAAAGGCAGCTTCTCCTTCTTCAGTTaGAACAGCCTCAGGTACAAT +
Preference number: 5 (lower is better)
Translates to: DQQQAQLYGHHGTGVKGSFSFFS*NSLRYN
Trigger: ATTGTACCTGAGGCTGTTCAAACTGAAGAAGGAGAA...GCTGCCTTTCACACCAGTGCCATGGTGTCCATATAGTTGAGCTTGTTGCTGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS GCA 90 bp GTTTGCTTTCTCGTCTGTGGTCGTTGGTACTGCAGGCTTGGGAATTaGAACAAGCTTTGGTATCGATCTGTCTCCTATGTAATCCTTCAT +
Preference number: 5 (lower is better)
Translates to: VCFLVCGRWYCRLGN*NKLWYRSVSYVILH
Trigger: ATGAAGGATTACATAGGAGACAGATCGATACCAAAGCTTGTTGCAATTCCCAAGCCTGCAGTACCAACGACCACAGACGAGAAAGCAAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060945.12
ENSMUST00000153821.2
CDS-3UTR CAA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGAGTACTGTGAGTCTCTaGTCTGCAGCTGTAGCATCT +
Preference number: 5 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPSTVSL*SAAVAS
Trigger: AGATGCTACAGCTGCAGACAAGAGACTCACAGTACT...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp AAATTAATTTTCTCCACATTAGACATTGGGACACCTCCTTTCAAGCTCCAGTTCTGCCTGGTGACAGTTTaGGAGAAACAGGGGAGGGCA +
Preference number: 5 (lower is better)
Translates to: KLIFSTLDIGTPPFKLQFCLVTV*EKQGRA
Trigger: TGCCCTCCCCTGTTTCTCCAAAACTGTCACCAGGCA...GAACTGGAGCTTGAAAGGAGGTGTCCCAATGTCTAATGTGGAGAAAATTAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS TCA 90 bp ACTTGGATTCCTGAGCGTTCTTCTCTAATGCATTCCCACACTCAATaGAAGACACTACAGCATCAAGGTAGTACACGGCTTTCTCAAACC +
Preference number: 5 (lower is better)
Translates to: TWIPERSSLMHSHTQ*KTLQHQGSTRLSQT
Trigger: GGTTTGAGAAAGCCGTGTACTACCTTGATGCTGTAGTGTCTTTCATTGAGTGTGGGAATGCATTAGAGAAGAACGCTCAGGAATCCAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CCA 90 bp GTCTGTGGTCGTTGGTACTGCAGGCTTGGGAATTGCAACAAGCTTTaGTATCGATCTGTCTCCTATGTAATCCTTCATTTCATCGTAGTT +
Preference number: 5 (lower is better)
Translates to: VCGRWYCRLGNCNKL*YRSVSYVILHFIVV
Trigger: AACTACGATGAAATGAAGGATTACATAGGAGACAGATCGATACCAAAGCTTGTTGCAATTCCCAAGCCTGCAGTACCAACGACCACAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060945.12
ENSMUST00000153821.2
CDS CCA 90 bp AATTTGGGTTTGCTTTCTCGTCTGTGGTCGTTGGTACTGCAGGCTTaGGAATTGCAACAAGCTTTGGTATCGATCTGTCTCCTATGTAAT +
Preference number: 5 (lower is better)
Translates to: NLGLLSRLWSLVLQA*ELQQALVSICLLCN
Trigger: ATTACATAGGAGACAGATCGATACCAAAGCTTGTTGCAATTCCCAAGCCTGCAGTACCAACGACCACAGACGAGAAAGCAAACCCAAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060945.12
ENSMUST00000153821.2
CDS-3UTR CAA 90 bp CCTAAAACAGTCATCCTCAGTAGATGTCCTTGGGACCCAGACACCTTACAGACTATTCGAGTCAGAAGATaGAGGTCAATCTTCACAATG +
Preference number: 5 (lower is better)
Translates to: PKTVILSRCPWDPDTLQTIRVRR*RSIFTM
Trigger: CATTGTGAAGATTGACCTCAATCTTCTGACTCGAAT...AGTCTGTAAGGTGTCTGGGTCCCAAGGACATCTACTGAGGATGACTGTTTTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS GCA 90 bp TTCTTGTGTTTCCTCTTGCCTTTGTTGGAAGCCTTTTCTGAGGCTTaGTTCTGCACCTCTCTCGAGTGTTTCTCTGGAACATTTTTCTTT +
Preference number: 5 (lower is better)
Translates to: FLCFLLPLLEAFSEA*FCTSLECFSGTFFF
Trigger: AAAGAAAAATGTTCCAGAGAAACACTCGAGAGAGGTGCAGAAGCAAGCCTCAGAAAAGGCTTCCAACAAAGGCAAGAGGAAACACAAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp TCTTCCCAGACCTTCTCAGTATTTTTCCTACTGATTTTACTCATAGCAACACTACTGCAGGCTTGGGAATaGCAACAAGCTTTGGTATCG +
Preference number: 5 (lower is better)
Translates to: SSQTFSVFFLLILLIATLLQAWE*QQALVS
Trigger: CGATACCAAAGCTTGTTGCAATTCCCAAGCCTGCAG...TAGTGTTGCTATGAGTAAAATCAGTAGGAAAAATACTGAGAAGGTCTGGGAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp TTCAGCAGCTCTGTGACTTTATTTGAAGCACTTACAGATAATAAAGTGACTTCAGTTGCCACTTGTTTGTaGGTGGTGGTTCAGGCTCAG +
Preference number: 5 (lower is better)
Translates to: FSSSVTLFEALTDNKVTSVATCL*VVVQAQ
Trigger: CTGAGCCTGAACCACCACCAACAAACAAGTGGCAAC...TGAAGTCACTTTATTATCTGTAAGTGCTTCAAATAAAGTCACAGAGCTGCTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGGATTTTGATTCCTTTTaGATGTTGGGTTTCCTCGAG +
Preference number: 5 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPDFDSF*MLGFLE
Trigger: CTCGAGGAAACCCAACATCAAAAAGGAATCAAAATC...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp TCTTCCCAGACCTTCTCAGTATTTTTCCTACTGATTTTACTCATAGCAACACTACATCAAAGGCAAGCTTaGTTCTCCGAGGCTTCGAAG +
Preference number: 5 (lower is better)
Translates to: SSQTFSVFFLLILLIATLHQRQA*FSEASK
Trigger: CTTCGAAGCCTCGGAGAACAAAGCTTGCCTTTGATG...TAGTGTTGCTATGAGTAAAATCAGTAGGAAAAATACTGAGAAGGTCTGGGAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp AAGCTGGATGGGATTTGTATTCCACATCCTAGAGGAATGAGTTATAGGAGTCCGGATAACTTATCTTCTTaGCTAGTGACTTTGTATGGC +
Preference number: 5 (lower is better)
Translates to: KLDGICIPHPRGMSYRSPDNLSS*LVTLYG
Trigger: GCCATACAAAGTCACTAGCAAAGAAGATAAGTTATC...CGGACTCCTATAACTCATTCCTCTAGGATGTGGAATACAAATCCCATCCAGCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp TCTTCCCAGACCTTCTCAGTATTTTTCCTACTGATTTTACTCATAGCAACACTAAGAGGGCCCATCACTTaGTCCAGTTCAGCAAAGAAT +
Preference number: 5 (lower is better)
Translates to: SSQTFSVFFLLILLIATLRGPIT*SSSAKN
Trigger: ATTCTTTGCTGAACTGGACAAAGTGATGGGCCCTCT...TAGTGTTGCTATGAGTAAAATCAGTAGGAAAAATACTGAGAAGGTCTGGGAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp AAATTAATTTTCTCCACATTAGACATTGGGACACCTCCTTTCAAGCTCCAGTTCCAACCAATTATCAAGTaGCCACTTGTTTGTTGGTGG +
Preference number: 5 (lower is better)
Translates to: KLIFSTLDIGTPPFKLQFQPIIK*PLVCWW
Trigger: CCACCAACAAACAAGTGGCAACTTGATAATTGGTTG...GAACTGGAGCTTGAAAGGAGGTGTCCCAATGTCTAATGTGGAGAAAATTAATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp TCTTCCCAGACCTTCTCAGTATTTTTCCTACTGATTTTACTCATAGCAACACTATCTTTGCTAGTGACTTaGTATGGCTCAGCAAAGAGA +
Preference number: 5 (lower is better)
Translates to: SSQTFSVFFLLILLIATLSLLVT*YGSAKR
Trigger: TCTCTTTGCTGAGCCATACAAAGTCACTAGCAAAGA...TAGTGTTGCTATGAGTAAAATCAGTAGGAAAAATACTGAGAAGGTCTGGGAAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp TCTTCCCAGACCTTCTCAGTATTTTTCCTACTGATTTTACTCATAGCAACACTATTCTTTCTTGTAGGCTaGAGAAGATGGGATGTTGCT +
Preference number: 5 (lower is better)
Translates to: SSQTFSVFFLLILLIATLFFLVG*RRWDVA
Trigger: AGCAACATCCCATCTTCTCAAGCCTACAAGAAAGAA...TAGTGTTGCTATGAGTAAAATCAGTAGGAAAAATACTGAGAAGGTCTGGGAAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp TTCAGCAGCTCTGTGACTTTATTTGAAGCACTTACAGATAATAAAGTGACTTCATGTTTCCTCTTGCCTTaGTTGGAAGCCTTTTCTGAG +
Preference number: 5 (lower is better)
Translates to: FSSSVTLFEALTDNKVTSCFLLP*LEAFSE
Trigger: CTCAGAAAAGGCTTCCAACAAAGGCAAGAGGAAACA...TGAAGTCACTTTATTATCTGTAAGTGCTTCAAATAAAGTCACAGAGCTGCTGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp AAATTAATTTTCTCCACATTAGACATTGGGACACCTCCTTTCAAGCTCCAGTTCGTATCATCATCATTCTaGTGTTTCCTCTTGCCTTTG +
Preference number: 5 (lower is better)
Translates to: KLIFSTLDIGTPPFKLQFVSSSF*CFLLPL
Trigger: CAAAGGCAAGAGGAAACACAAGAATGATGATGATAC...GAACTGGAGCTTGAAAGGAGGTGTCCCAATGTCTAATGTGGAGAAAATTAATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp TTCAGCAGCTCTGTGACTTTATTTGAAGCACTTACAGATAATAAAGTGACTTCAGAATTGCAACAAGCTTaGGTATCGATCTGTCTCCTA +
Preference number: 5 (lower is better)
Translates to: FSSSVTLFEALTDNKVTSELQQA*VSICLL
Trigger: TAGGAGACAGATCGATACCAAAGCTTGTTGCAATTC...TGAAGTCACTTTATTATCTGTAAGTGCTTCAAATAAAGTCACAGAGCTGCTGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp TTCAGCAGCTCTGTGACTTTATTTGAAGCACTTACAGATAATAAAGTGACTTCATTCTTGTGTTTCCTCTaGCCTTTGTTGGAAGCCTTT +
Preference number: 5 (lower is better)
Translates to: FSSSVTLFEALTDNKVTSFLCFL*PLLEAF
Trigger: AAAGGCTTCCAACAAAGGCAAGAGGAAACACAAGAA...TGAAGTCACTTTATTATCTGTAAGTGCTTCAAATAAAGTCACAGAGCTGCTGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS-3UTR CAA 90 bp TCTTCCCAGACCTTCTCAGTATTTTTCCTACTGATTTTACTCATAGCAACACTAAATTCTTTTTGTTCTTaGGAAAGCTGTTCAGCTTGG +
Preference number: 5 (lower is better)
Translates to: SSQTFSVFFLLILLIATLNSFCS*ESCSAW
Trigger: CCAAGCTGAACAGCTTTCCAAAGAACAAAAAGAATT...TAGTGTTGCTATGAGTAAAATCAGTAGGAAAAATACTGAGAAGGTCTGGGAAGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CCA 72 bp CTGCTGCTGGCGCCACTCCCTCCTGCACCACTCCGTTaGCTGCTGTGTCCACTCTGCAGGGCAGAGGAGCGT +
Preference number: 6 (lower is better)
Translates to: LLLAPLPPAPLR*LLCPLCRAEER
Trigger: ACGCTCCTCTGCCCTGCAGAGTGGACACAGCAGCCAACGGAGTGGTGCAGGAGGGAGTGGCGCCAGCAGCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CCA 72 bp TGTAGGAGTCACGGTCATGCCTCTGGCCACTGCTGCTaGCGCCACTCCCTCCTGCACCACTCCGTTGGCTGC +
Preference number: 6 (lower is better)
Translates to: CRSHGHASGHCC*RHSLLHHSVGC
Trigger: GCAGCCAACGGAGTGGTGCAGGAGGGAGTGGCGCCAGCAGCAGTGGCCAGAGGCATGACCGTGACTCCTACA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS GCA 72 bp TACTGCTGTAGGAGTCACGGTCATGCCTCTGGCCACTaGTGCTGGCGCCACTCCCTCCTGCACCACTCCGTT +
Preference number: 6 (lower is better)
Translates to: YCCRSHGHASGH*CWRHSLLHHSV
Trigger: AACGGAGTGGTGCAGGAGGGAGTGGCGCCAGCAGCAGTGGCCAGAGGCATGACCGTGACTCCTACAGCAGTA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS GCA 72 bp TCTGCAGGGCAGAGGAGCGTTTCTGAGACTGAGAGGTaGTGGGGGCGGGGCCTACAGGAGTCCATTTGCTAC +
Preference number: 6 (lower is better)
Translates to: SAGQRSVSETER*WGRGLQESICY
Trigger: GTAGCAAATGGACTCCTGTAGGCCCCGCCCCCAGCACCTCTCAGTCTCAGAAACGCTCCTCTGCCCTGCAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CCA 72 bp GCAGGGCAGAGGAGCGTTTCTGAGACTGAGAGGTGCTaGGGGCGGGGCCTACAGGAGTCCATTTGCTACTCT +
Preference number: 6 (lower is better)
Translates to: AGQRSVSETERC*GRGLQESICYS
Trigger: AGAGTAGCAAATGGACTCCTGTAGGCCCCGCCCCCAGCACCTCTCAGTCTCAGAAACGCTCCTCTGCCCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS GCA 72 bp GCTTCGCTGTGGAGGAGGAGCTGCTCTTGCTGCTGCTaGCACTGTTCTCTTTGCTGCTGGTCCCACTGGACT +
Preference number: 6 (lower is better)
Translates to: ASLWRRSCSCCC*HCSLCCWSHWT
Trigger: AGTCCAGTGGGACCAGCAGCAAAGAGAACAGTGGCAGCAGCAGCAAGAGCAGCTCCTCCTCCACAGCGAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CAA 90 bp CTATTTGGAGCCTTCTCCTTGGCCTCCTTGGAGCTGCTGGGACCCTaGCCTTCAGTCTTCTTCTGCTTCGCTGTGGAGGAGGAGCTGCTC +
Preference number: 6 (lower is better)
Translates to: LFGAFSLASLELLGP*PSVFFCFAVEEELL
Trigger: GAGCAGCTCCTCCTCCACAGCGAAGCAGAAGAAGACTGAAGGCAAGGGTCCCAGCAGCTCCAAGGAGGCCAAGGAGAAGGCTCCAAATAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS GCA 72 bp AGTCAGACCCAGAGCTGCTCTCAGATCCACTGTGGCTaGTCGAGTCATCCCTGGAGTTGTCTGCTCCCTCAC +
Preference number: 6 (lower is better)
Translates to: SQTQSCSQIHCG*SSHPWSCLLPH
Trigger: GTGAGGGAGCAGACAACTCCAGGGATGACTCGAGCAGCCACAGTGGATCTGAGAGCAGCTCTGGGTCTGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060945.12
ENSMUST00000152616.3
CDS GCA 72 bp TCTTCTGCTTCGCTGTGGAGGAGGAGCTGCTCTTGCTaGTGCTGCCACTGTTCTCTTTGCTGCTGGTCCCAC +
Preference number: 6 (lower is better)
Translates to: SSASLWRRSCSC*CCHCSLCCWSH
Trigger: GTGGGACCAGCAGCAAAGAGAACAGTGGCAGCAGCAGCAAGAGCAGCTCCTCCTCCACAGCGAAGCAGAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS GCA 72 bp TTGGAGCTGCTGGGACCCTTGCCTTCAGTCTTCTTCTaGTTCGCTGTGGAGGAGGAGCTGCTCTTGCTGCTG +
Preference number: 6 (lower is better)
Translates to: LELLGPLPSVFF*FAVEEELLLLL
Trigger: CAGCAGCAAGAGCAGCTCCTCCTCCACAGCGAAGCAGAAGAAGACTGAAGGCAAGGGTCCCAGCAGCTCCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS GCA 72 bp GAGAGGTGCTGGGGGCGGGGCCTACAGGAGTCCATTTaGTACTCTGATGAGATCCTCCATGTCTCTGCTCAA +
Preference number: 6 (lower is better)
Translates to: ERCWGRGLQESI*YSDEILHVSAQ
Trigger: TTGAGCAGAGACATGGAGGATCTCATCAGAGTAGCAAATGGACTCCTGTAGGCCCCGCCCCCAGCACCTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060945.12
ENSMUST00000153821.2
CDS GCA 72 bp TTTGTTGGTGGTGGTTCAGGCTCAGGAGATGCGCTCTaGGACGGCTCATTAGCCTCACTGTCACTGGAGCTG +
Preference number: 6 (lower is better)
Translates to: FVGGGSGSGDAL*DGSLASLSLEL
Trigger: CAGCTCCAGTGACAGTGAGGCTAATGAGCCGTCGCAGAGCGCATCTCCTGAGCCTGAACCACCACCAACAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CCA 72 bp TATTTGGAGCCTTCTCCTTGGCCTCCTTGGAGCTGCTaGGACCCTTGCCTTCAGTCTTCTTCTGCTTCGCTG +
Preference number: 6 (lower is better)
Translates to: YLEPSPWPPWSC*DPCLQSSSASL
Trigger: CAGCGAAGCAGAAGAAGACTGAAGGCAAGGGTCCCAGCAGCTCCAAGGAGGCCAAGGAGAAGGCTCCAAATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS TCA 72 bp CTGTGCAGGAGACTTCTGCCTCCCACGGCCACTTTCTaGTCCCTTTTGGATGGTTTTAGAGTCTCGTCCTGG +
Preference number: 6 (lower is better)
Translates to: LCRRLLPPTATF*SLLDGFRVSSW
Trigger: CCAGGACGAGACTCTAAAACCATCCAAAAGGGATCAGAAAGTGGCCGTGGGAGGCAGAAGTCTCCTGCACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CCA 72 bp TGCTCTCAGATCCACTGTGGCTGCTCGAGTCATCCCTaGAGTTGTCTGCTCCCTCACTGTTATGGTGTGAAG +
Preference number: 6 (lower is better)
Translates to: CSQIHCGCSSHP*SCLLPHCYGVK
Trigger: CTTCACACCATAACAGTGAGGGAGCAGACAACTCCAGGGATGACTCGAGCAGCCACAGTGGATCTGAGAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060945.12
ENSMUST00000152616.3
CDS CAA 90 bp GTAGTTACTGGCAGTGCCCTGCTCCCGGCCTTCTTTCTTGTAGGCTaGAGAAGATGGGATGTTGCTGTCTACAGAGGAAGCTGGGGATAC +
Preference number: 6 (lower is better)
Translates to: VVTGSALLPAFFLVG*RRWDVAVYRGSWGY
Trigger: GTATCCCCAGCTTCCTCTGTAGACAGCAACATCCCATCTTCTCAAGCCTACAAGAAAGAAGGCCGGGAGCAGGGCACTGCCAGTAACTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CAA 90 bp AAGCTATCTTCTTCCTCCACTGAGGAGGGTTTGACAGGAGTCCTGTaGCTTTCAGGGTACTTAGGAGTCTGTGAGGAGGGAGGCAGGCTC +
Preference number: 6 (lower is better)
Translates to: KLSSSSTEEGLTGVL*LSGYLGVCEEGGRL
Trigger: GAGCCTGCCTCCCTCCTCACAGACTCCTAAGTACCCTGAAAGCAACAGGACTCCTGTCAAACCCTCCTCAGTGGAGGAAGAAGATAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS TCA 72 bp TTGCTGCTGGTCCCACTGGACTTTAAGGACGACGACTaGCTGACAGTCCTCTTCCGAGAACCATGCTCTGTT +
Preference number: 6 (lower is better)
Translates to: LLLVPLDFKDDD*LTVLFREPCSV
Trigger: AACAGAGCATGGTTCTCGGAAGAGGACTGTCAGTCAGTCGTCGTCCTTAAAGTCCAGTGGGACCAGCAGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CCA 72 bp CTGCTCCCGGCCTTCTTTCTTGTAGGCTTGAGAAGATaGGATGTTGCTGTCTACAGAGGAAGCTGGGGATAC +
Preference number: 6 (lower is better)
Translates to: LLPAFFLVGLRR*DVAVYRGSWGY
Trigger: GTATCCCCAGCTTCCTCTGTAGACAGCAACATCCCATCTTCTCAAGCCTACAAGAAAGAAGGCCGGGAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CAA 72 bp TTTGATTCCTTTTTGATGTTGGGTTTCCTCGAGCCCTaGGTGGCTGCTTTGTGCCTGCTGGAGGGCATGCTG +
Preference number: 6 (lower is better)
Translates to: FDSFLMLGFLEP*VAALCLLEGML
Trigger: CAGCATGCCCTCCAGCAGGCACAAAGCAGCCACCAAGGGCTCGAGGAAACCCAACATCAAAAAGGAATCAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CAA 90 bp TTCTCTGCCGTAGGTCGAGGAGAAGATTTTGATTCCTTTTTGATGTaGGGTTTCCTCGAGCCCTTGGTGGCTGCTTTGTGCCTGCTGGAG +
Preference number: 6 (lower is better)
Translates to: FSAVGRGEDFDSFLM*GFLEPLVAALCLLE
Trigger: CTCCAGCAGGCACAAAGCAGCCACCAAGGGCTCGAGGAAACCCAACATCAAAAAGGAATCAAAATCTTCTCCTCGACCTACGGCAGAGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS TCA 72 bp TGCTGGTCCCACTGGACTTTAAGGACGACGACTGACTaGCAGTCCTCTTCCGAGAACCATGCTCTGTTTTTG +
Preference number: 6 (lower is better)
Translates to: CWSHWTLRTTTD*QSSSENHALFL
Trigger: CAAAAACAGAGCATGGTTCTCGGAAGAGGACTGTCAGTCAGTCGTCGTCCTTAAAGTCCAGTGGGACCAGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CAA 72 bp ATCTCCCGAGACTTCTGGGACGGTTTACTGGCTGACTaGTACTTCTTCTTCTCTGCCGTAGGTCGAGGAGAA +
Preference number: 6 (lower is better)
Translates to: ISRDFWDGLLAD*YFFFSAVGRGE
Trigger: TTCTCCTCGACCTACGGCAGAGAAGAAGAAGTACAAGTCAGCCAGTAAACCGTCCCAGAAGTCTCGGGAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CCA 72 bp GAGTCATCCCTGGAGTTGTCTGCTCCCTCACTGTTATaGTGTGAAGGTTCAGAGTTACTTCCTGGTGTACTC +
Preference number: 6 (lower is better)
Translates to: ESSLELSAPSLL*CEGSELLPGVL
Trigger: GAGTACACCAGGAAGTAACTCTGAACCTTCACACCATAACAGTGAGGGAGCAGACAACTCCAGGGATGACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060945.12
ENSMUST00000152616.3
CDS CCA 72 bp GACGAGGTGTCAGTCTCTATGATCTCCCGAGACTTCTaGGACGGTTTACTGGCTGACTTGTACTTCTTCTTC +
Preference number: 6 (lower is better)
Translates to: DEVSVSMISRDF*DGLLADLYFFF
Trigger: GAAGAAGAAGTACAAGTCAGCCAGTAAACCGTCCCAGAAGTCTCGGGAGATCATAGAGACTGACACCTCGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CAA 72 bp TCTGCCGTAGGTCGAGGAGAAGATTTTGATTCCTTTTaGATGTTGGGTTTCCTCGAGCCCTTGGTGGCTGCT +
Preference number: 6 (lower is better)
Translates to: SAVGRGEDFDSF*MLGFLEPLVAA
Trigger: AGCAGCCACCAAGGGCTCGAGGAAACCCAACATCAAAAAGGAATCAAAATCTTCTCCTCGACCTACGGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CAA 72 bp CTACTCTGCTTAGATGACTCTCTGCTGCTGGATGGCTaGTGGCCTGATGAGTTCTTGTCCTCTGTTTTGGGT +
Preference number: 6 (lower is better)
Translates to: LLCLDDSLLLDG*WPDEFLSSVLG
Trigger: ACCCAAAACAGAGGACAAGAACTCATCAGGCCACAAGCCATCCAGCAGCAGAGAGTCATCTAAGCAGAGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CAA 90 bp TTCTTCTTCTCTGCCGTAGGTCGAGGAGAAGATTTTGATTCCTTTTaGATGTTGGGTTTCCTCGAGCCCTTGGTGGCTGCTTTGTGCCTG +
Preference number: 6 (lower is better)
Translates to: FFFSAVGRGEDFDSF*MLGFLEPLVAALCL
Trigger: CAGGCACAAAGCAGCCACCAAGGGCTCGAGGAAACCCAACATCAAAAAGGAATCAAAATCTTCTCCTCGACCTACGGCAGAGAAGAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS GCA 72 bp TTCCTCTTGCCTTTGTTGGAAGCCTTTTCTGAGGCTTaGTTCTGCACCTCTCTCGAGTGTTTCTCTGGAACA +
Preference number: 6 (lower is better)
Translates to: FLLPLLEAFSEA*FCTSLECFSGT
Trigger: TGTTCCAGAGAAACACTCGAGAGAGGTGCAGAAGCAAGCCTCAGAAAAGGCTTCCAACAAAGGCAAGAGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CCA 72 bp TTGCTTTCTCGTCTGTGGTCGTTGGTACTGCAGGCTTaGGAATTGCAACAAGCTTTGGTATCGATCTGTCTC +
Preference number: 6 (lower is better)
Translates to: LLSRLWSLVLQA*ELQQALVSICL
Trigger: GAGACAGATCGATACCAAAGCTTGTTGCAATTCCCAAGCCTGCAGTACCAACGACCACAGACGAGAAAGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060945.12
ENSMUST00000153821.2
CDS CAA 72 bp GTAGGTCGAGGAGAAGATTTTGATTCCTTTTTGATGTaGGGTTTCCTCGAGCCCTTGGTGGCTGCTTTGTGC +
Preference number: 6 (lower is better)
Translates to: VGRGEDFDSFLM*GFLEPLVAALC
Trigger: GCACAAAGCAGCCACCAAGGGCTCGAGGAAACCCAACATCAAAAAGGAATCAAAATCTTCTCCTCGACCTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CAA 90 bp GTCTCTATGATCTCCCGAGACTTCTGGGACGGTTTACTGGCTGACTaGTACTTCTTCTTCTCTGCCGTAGGTCGAGGAGAAGATTTTGAT +
Preference number: 6 (lower is better)
Translates to: VSMISRDFWDGLLAD*YFFFSAVGRGEDFD
Trigger: ATCAAAATCTTCTCCTCGACCTACGGCAGAGAAGAAGAAGTACAAGTCAGCCAGTAAACCGTCCCAGAAGTCTCGGGAGATCATAGAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CAA 90 bp CTGCCATCTGGTGGATTTTCTGTGGAATGGTCACTGAAGAACCACTaGCTGAAGCACTACTTCCCCCAGAAGAGTAACTTCCAGAATTGC +
Preference number: 6 (lower is better)
Translates to: LPSGGFSVEWSLKNH*LKHYFPQKSNFQNC
Trigger: GCAATTCTGGAAGTTACTCTTCTGGGGGAAGTAGTGCTTCAGCAAGTGGTTCTTCAGTGACCATTCCACAGAAAATCCACCAGATGGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CAA 90 bp GGTTTGCTTTCTCGTCTGTGGTCGTTGGTACTGCAGGCTTGGGAATaGCAACAAGCTTTGGTATCGATCTGTCTCCTATGTAATCCTTCA +
Preference number: 6 (lower is better)
Translates to: GLLSRLWSLVLQAWE*QQALVSICLLCNPS
Trigger: TGAAGGATTACATAGGAGACAGATCGATACCAAAGCTTGTTGCAATTCCCAAGCCTGCAGTACCAACGACCACAGACGAGAAAGCAAACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060945.12
ENSMUST00000153821.2
CDS TCA 72 bp GTGTCTGAGTACATAGGGAATGGGGACTTGGATTCCTaGGCGTTCTTCTCTAATGCATTCCCACACTCAATG +
Preference number: 6 (lower is better)
Translates to: VSEYIGNGDLDS*AFFSNAFPHSM
Trigger: CATTGAGTGTGGGAATGCATTAGAGAAGAACGCTCAGGAATCCAAGTCCCCATTCCCTATGTACTCAGACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS GCA 72 bp ATTTGGGTTTGCTTTCTCGTCTGTGGTCGTTGGTACTaGAGGCTTGGGAATTGCAACAAGCTTTGGTATCGA +
Preference number: 6 (lower is better)
Translates to: IWVCFLVCGRWY*RLGNCNKLWYR
Trigger: TCGATACCAAAGCTTGTTGCAATTCCCAAGCCTGCAGTACCAACGACCACAGACGAGAAAGCAAACCCAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060945.12
ENSMUST00000153821.2
CDS CCA 72 bp AAGCTTTGTTCTCCGAGGCTTCGAAGACTCAGAAGTTaGTGTAGACGGAGGACAATTAGAGGAGCTATTTGG +
Preference number: 6 (lower is better)
Translates to: KLCSPRLRRLRS*CRRRTIRGAIW
Trigger: CCAAATAGCTCCTCTAATTGTCCTCCGTCTACACCAACTTCTGAGTCTTCGAAGCCTCGGAGAACAAAGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CAA 72 bp TTTGCTTTCTCGTCTGTGGTCGTTGGTACTGCAGGCTaGGGAATTGCAACAAGCTTTGGTATCGATCTGTCT +
Preference number: 6 (lower is better)
Translates to: FAFSSVVVGTAG*GIATSFGIDLS
Trigger: AGACAGATCGATACCAAAGCTTGTTGCAATTCCCAAGCCTGCAGTACCAACGACCACAGACGAGAAAGCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060945.12
ENSMUST00000153821.2
CDS CAA 72 bp CTGGCTCGGGTATCATCATCATTCTTGTGTTTCCTCTaGCCTTTGTTGGAAGCCTTTTCTGAGGCTTGCTTC +
Preference number: 6 (lower is better)
Translates to: LARVSSSFLCFL*PLLEAFSEACF
Trigger: GAAGCAAGCCTCAGAAAAGGCTTCCAACAAAGGCAAGAGGAAACACAAGAATGATGATGATACCCGAGCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CAA 72 bp GAATTCTTCAGGTGCTCAGTTAGCGTCTTGGAGTACTaGAGAGCGTTCTCCTTCTTCAGTTTGAACAGCCTC +
Preference number: 6 (lower is better)
Translates to: EFFRCSVSVLEY*RAFSFFSLNSL
Trigger: GAGGCTGTTCAAACTGAAGAAGGAGAACGCTCTCAAGTACTCCAAGACGCTAACTGAGCACCTGAAGAATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CAA 72 bp GGTGGATTTTCTGTGGAATGGTCACTGAAGAACCACTaGCTGAAGCACTACTTCCCCCAGAAGAGTAACTTC +
Preference number: 6 (lower is better)
Translates to: GGFSVEWSLKNH*LKHYFPQKSNF
Trigger: GAAGTTACTCTTCTGGGGGAAGTAGTGCTTCAGCAAGTGGTTCTTCAGTGACCATTCCACAGAAAATCCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CAA 90 bp CGTCTGTGGTCGTTGGTACTGCAGGCTTGGGAATTGCAACAAGCTTaGGTATCGATCTGTCTCCTATGTAATCCTTCATTTCATCGTAGT +
Preference number: 6 (lower is better)
Translates to: RLWSLVLQAWELQQA*VSICLLCNPSFHRS
Trigger: ACTACGATGAAATGAAGGATTACATAGGAGACAGATCGATACCAAAGCTTGTTGCAATTCCCAAGCCTGCAGTACCAACGACCACAGACG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060945.12
ENSMUST00000153821.2
CDS CAA 90 bp TCAGTTAGCGTCTTGGAGTACTTGAGAGCGTTCTCCTTCTTCAGTTaGAACAGCCTCAGGTACAATAATGACTGGCATCTCAGGCAAAGT +
Preference number: 6 (lower is better)
Translates to: SVSVLEYLRAFSFFS*NSLRYNNDWHLRQS
Trigger: ACTTTGCCTGAGATGCCAGTCATTATTGTACCTGAGGCTGTTCAAACTGAAGAAGGAGAACGCTCTCAAGTACTCCAAGACGCTAACTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS TCA 72 bp CCTGAGCGTTCTTCTCTAATGCATTCCCACACTCAATaGAAGACACTACAGCATCAAGGTAGTACACGGCTT +
Preference number: 6 (lower is better)
Translates to: PERSSLMHSHTQ*KTLQHQGSTRL
Trigger: AAGCCGTGTACTACCTTGATGCTGTAGTGTCTTTCATTGAGTGTGGGAATGCATTAGAGAAGAACGCTCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS GCA 72 bp TTGCCTTTGTTGGAAGCCTTTTCTGAGGCTTGCTTCTaGACCTCTCTCGAGTGTTTCTCTGGAACATTTTTC +
Preference number: 6 (lower is better)
Translates to: LPLLEAFSEACF*TSLECFSGTFF
Trigger: GAAAAATGTTCCAGAGAAACACTCGAGAGAGGTGCAGAAGCAAGCCTCAGAAAAGGCTTCCAACAAAGGCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CCA 72 bp TCCAGGGCCAAAGTTAGACTGTTGCGACTCCTTAGTTaGAAAAGGGAATTTGGAAGGTTCTGTTTTGCATGG +
Preference number: 6 (lower is better)
Translates to: SRAKVRLLRLLS*KREFGRFCFAW
Trigger: CCATGCAAAACAGAACCTTCCAAATTCCCTTTTCCAACTAAGGAGTCGCAACAGTCTAACTTTGGCCCTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12
CDS CAA 72 bp GTATCATCATCATTCTTGTGTTTCCTCTTGCCTTTGTaGGAAGCCTTTTCTGAGGCTTGCTTCTGCACCTCT +
Preference number: 6 (lower is better)
Translates to: VSSSFLCFLLPL*EAFSEACFCTS
Trigger: AGAGGTGCAGAAGCAAGCCTCAGAAAAGGCTTCCAACAAAGGCAAGAGGAAACACAAGAATGATGATGATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060945.12