RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AFAP1L2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025083

Ensembl transcript IDs: ENSMUST00000111584.9, ENSMUST00000118800.8, ENSMUST00000122359.8, ENSMUST00000126964.8, ENSMUST00000148049.8

Found 397 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCTCAGAGTTaGTGTTTTATTGAAGACTTGTCCAGAGCAGGATTGTCACCAAGG +
Preference number: 1 (lower is better)
Translates to: HPLLCLVNRLTFPQS*CFIEDLSRAGLSPR
Trigger: CCTTGGTGACAATCCTGCTCTGGACAAGTCTTCAATAAAACAGCAACTCTGAGGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR CCA 90 bp AGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTCCACGATGCTGCTGCTaGGATCCCTTTGGCTTGAGG +
Preference number: 2 (lower is better)
Translates to: SDPKGVSALAWFPICPSSPRCCC*DPFGLR
Trigger: CCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGG...AGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR CCA 90 bp TTAGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCCACGATGCTGCTGCTaGGATCCCTTTGGCTTGAGG +
Preference number: 2 (lower is better)
Translates to: LVTPRGSVPWLGSQYVPLPRCCC*DPFGLR
Trigger: CCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGG...AAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR TCA 90 bp AGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTGAGTTGCTGTTTTATTaGAGACTTGTCCAGAGCAGG +
Preference number: 2 (lower is better)
Translates to: SDPKGVSALAWFPICPSSELLFY*RLVQSR
Trigger: CCTGCTCTGGACAAGTCTTCAATAAAACAGCAACTC...AGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR TCA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGGGTACATTGTCTCATTaGCAGCCAGTAGATTTCGAC +
Preference number: 2 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLGTLSH*QPVDFD
Trigger: GTCGAAATCTACTGGCTGTCAATGAGACAATGTACC...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR GCA 90 bp ATGCCACCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCACCTTTCCTCAGAGTTaGTGTTTTATTGAAGACTTG +
Preference number: 2 (lower is better)
Translates to: MPPRCCCWDPFGLRRRQGTFPQS*CFIEDL
Trigger: CAAGTCTTCAATAAAACAGCAACTCTGAGGAAAGGT...GCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGGTGGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR TCA 90 bp TTAGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTTTGCCAAATACAGGATaGAAGATAAGGGGGTCAGGA +
Preference number: 2 (lower is better)
Translates to: LVTPRGSVPWLGSQYVPLLPNTG*KIRGSG
Trigger: TCCTGACCCCCTTATCTTTCATCCTGTATTTGGCAA...AAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR CCA 90 bp AATGTATCAACTTGTGCTAGTGCTGTCCCAGAGAGACAGCACATAAAGACAGCACTGCTGGGATCCCTTTaGCTTGAGGAGGAGACAGGG +
Preference number: 2 (lower is better)
Translates to: NVSTCASAVPERQHIKTALLGSL*LEEETG
Trigger: CCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAG...TGCTGTCTTTATGTGCTGTCTCTCTGGGACAGCACTAGCACAAGTTGATACATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR CCA 90 bp TTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCCTGCTGGGATCCCTTTaGCTTGAGGAGGAGACAGGG +
Preference number: 2 (lower is better)
Translates to: LAWFPICPSSTDYRVLMFLLGSL*LEEETG
Trigger: CCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAG...GAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAACCAAGCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR CAA 90 bp CTCTTAACCGAAGCTCCGTTTGCAGCGAGCGCCTCATCCCTTGCTTaGTCTTGTAAACAGACTCACCTTTCCTCAGAGTTGCTGTTTTAT +
Preference number: 2 (lower is better)
Translates to: LLTEAPFAASASSLA*SCKQTHLSSELLFY
Trigger: ATAAAACAGCAACTCTGAGGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAACGGAGCTTCGGTTAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR TCA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCGGGATCCCTTTGGCTTaGGGAGGAGACAGGGCCTTC +
Preference number: 2 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTGIPLA*GGDRAF
Trigger: GAAGGCCCTGTCTCCTCCTCAAGCCAAAGGGATCCC...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR CCA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACCTGCTGGGATCCCTTTaGCTTGAGGAGGAGACAGGG +
Preference number: 2 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDLLGSL*LEEETG
Trigger: CCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAG...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR GCA 90 bp TTAGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTACCTTTCCTCAGAGTTaGTGTTTTATTGAAGACTTG +
Preference number: 2 (lower is better)
Translates to: LVTPRGSVPWLGSQYVPLTFPQS*CFIEDL
Trigger: CAAGTCTTCAATAAAACAGCAACTCTGAGGAAAGGT...AAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR TCA 90 bp TTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCGAGTTGCTGTTTTATTaGAGACTTGTCCAGAGCAGG +
Preference number: 2 (lower is better)
Translates to: LAWFPICPSSTDYRVLMFELLFY*RLVQSR
Trigger: CCTGCTCTGGACAAGTCTTCAATAAAACAGCAACTC...GAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAACCAAGCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR TCA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACTTGCCAAATACAGGATaGAAGATAAGGGGGTCAGGA +
Preference number: 2 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDLPNTG*KIRGSG
Trigger: TCCTGACCCCCTTATCTTTCATCCTGTATTTGGCAA...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR CCA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCGGAGCCCACCCAATTTaGGCAAACATGAAGACAATG +
Preference number: 2 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTGAHPI*ANMKTM
Trigger: CATTGTCTTCATGTTTGCCCAAATTGGGTGGGCTCC...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR TCA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCGAGTTGCTGTTTTATTaGAGACTTGTCCAGAGCAGG +
Preference number: 2 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTELLFY*RLVQSR
Trigger: CCTGCTCTGGACAAGTCTTCAATAAAACAGCAACTC...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR CAA 90 bp TTGAGGAGGAGACAGGGCCTTCTCTTAACCGAAGCTCCGTTTGCAGCGAGCGCCTTGTCCAGAGCAGGATaGTCACCAAGGTCCACAGTC +
Preference number: 3 (lower is better)
Translates to: LRRRQGLLLTEAPFAASALSRAG*SPRSTV
Trigger: GACTGTGGACCTTGGTGACAATCCTGCTCTGGACAA...GGCGCTCGCTGCAAACGGAGCTTCGGTTAAGAGAAGGCCCTGTCTCCTCCTCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR CAA 90 bp AGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTTGGGATCCCTTTGGCTaGAGGAGGAGACAGGGCCTT +
Preference number: 3 (lower is better)
Translates to: SDPKGVSALAWFPICPSSWDPFG*RRRQGL
Trigger: AAGGCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCA...AGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR CCA 72 bp AAAGATGCCACCACGATGCTGCTGCTGGGATCCCTTTaGCTTGAGGAGGAGACAGGGCCTTCTCTTAACCGA +
Preference number: 3 (lower is better)
Translates to: KDATTMLLLGSL*LEEETGPSLNR
Trigger: TCGGTTAAGAGAAGGCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGGTGGCATCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR CCA 72 bp ATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTaGGATCCCTTTGGCTTGAGGAGGAGACAGGGCCTT +
Preference number: 3 (lower is better)
Translates to: ISTPKMPPRCCC*DPFGLRRRQGL
Trigger: AAGGCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR CAA 90 bp GCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCCTTTGTCCAGAGCAGGATaGTCACCAAGGTCCACAGTC +
Preference number: 3 (lower is better)
Translates to: ASRFRLQRCHHDAAAGIPLSRAG*SPRSTV
Trigger: GACTGTGGACCTTGGTGACAATCCTGCTCTGGACAA...AGGGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR CCA 72 bp GTCCTTAGTGACCCCAAGGGGGTCAGTGCCTTGGCTTaGTTCCCAATATGTCCCTCTTCTACTGATTACAGG +
Preference number: 3 (lower is better)
Translates to: VLSDPKGVSALA*FPICPSSTDYR
Trigger: CCTGTAATCAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACTAAGGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR CCA 72 bp GGGAAGTCCTTAGTGACCCCAAGGGGGTCAGTGCCTTaGCTTGGTTCCCAATATGTCCCTCTTCTACTGATT +
Preference number: 3 (lower is better)
Translates to: GKSLVTPRGSVP*LGSQYVPLLLI
Trigger: AATCAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACTAAGGACTTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR CAA 90 bp CAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCTCAGTTGTCCAGAGCAGGATaGTCACCAAGGTCCACAGTC +
Preference number: 3 (lower is better)
Translates to: QRAPHPLLCLVNRLTFPQLSRAG*SPRSTV
Trigger: GACTGTGGACCTTGGTGACAATCCTGCTCTGGACAA...CTGAGGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR CAA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCAGAGTTGCTGTTTTATaGAAGACTTGTCCAGAGCAG +
Preference number: 3 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSRVAVL*KTCPEQ
Trigger: CTGCTCTGGACAAGTCTTCAATAAAACAGCAACTCT...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR CAA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGAGGTACATTGTCTCATaGACAGCCAGTAGATTTCGA +
Preference number: 3 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLRYIVS*TASRFR
Trigger: TCGAAATCTACTGGCTGTCAATGAGACAATGTACCT...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR CAA 90 bp AAGCTCCGTTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCAGAGTTGCTGTTTTATaGAAGACTTGTCCAGAGCAG +
Preference number: 3 (lower is better)
Translates to: KLRLQRAPHPLLCLVNRLRVAVL*KTCPEQ
Trigger: CTGCTCTGGACAAGTCTTCAATAAAACAGCAACTCT...GAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAACGGAGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR-3UTR CAA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCAGGTACATTGTCTCATaGACAGCCAGTAGATTTCGA +
Preference number: 3 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTRYIVS*TASRFR
Trigger: TCGAAATCTACTGGCTGTCAATGAGACAATGTACCT...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR TCA 72 bp ATCTTTAAAAAGAAAAGGGAAGGTACATTGTCTCATTaGCAGCCAGTAGATTTCGACTCCAAAGATGCCACC +
Preference number: 3 (lower is better)
Translates to: IFKKKREGTLSH*QPVDFDSKDAT
Trigger: GGTGGCATCTTTGGAGTCGAAATCTACTGGCTGTCAATGAGACAATGTACCTTCCCTTTTCTTTTTAAAGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR TCA 72 bp AGCCCACCCAATTTGGGCAAACATGAAGACAATGCATaGTTTAAACCTCAACATTGCCAAATACAGGATGAA +
Preference number: 3 (lower is better)
Translates to: SPPNLGKHEDNA*FKPQHCQIQDE
Trigger: TTCATCCTGTATTTGGCAATGTTGAGGTTTAAATCATGCATTGTCTTCATGTTTGCCCAAATTGGGTGGGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTGAGGAGGAGACAGGGCCTTCTCTTAACCGAAGCTCCGTTTGCAGCGAGCGCCACCAGGCTGAGGGGCTaGTGGGCCACCTTGCTCCGG +
Preference number: 4 (lower is better)
Translates to: LRRRQGLLLTEAPFAASATRLRG*WATLLR
Trigger: CCGGAGCAAGGTGGCCCAGCAGCCCCTCAGCCTGGT...GGCGCTCGCTGCAAACGGAGCTTCGGTTAAGAGAAGGCCCTGTCTCCTCCTCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp CCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCCTTCTCGTCCTGATGTGGCACTaGTGGGAGAGAGGCCTGCGC +
Preference number: 4 (lower is better)
Translates to: PRCCCWDPFGLRRRQGLLVLMWH*WERGLR
Trigger: GCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGAC...GAGAAGGCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp AGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACCAGGCTGAGGGGCTaGTGGGCCACCTTGCTCCGG +
Preference number: 4 (lower is better)
Translates to: SDPKGVSALAWFPICPSSTRLRG*WATLLR
Trigger: CCGGAGCAAGGTGGCCCAGCAGCCCCTCAGCCTGGT...AGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp ATGCCACCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCAGCTGCTTGGCCCACTaGCCTAGCCACTTCTTGCGC +
Preference number: 4 (lower is better)
Translates to: MPPRCCCWDPFGLRRRQGSCLAH*PSHFLR
Trigger: GCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCT...GCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGGTGGCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCCTTCTCCCTGGCAATCCCGGCTaGGCAGGCCATCGATGTATG +
Preference number: 4 (lower is better)
Translates to: PRCCCWDPFGLRRRQGLLPGNPG*AGHRCM
Trigger: CATACATCGATGGCCTGCCCAGCCGGGATTGCCAGG...GAGAAGGCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp ATGCCACCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCTCTGGAAGGCTCTTCTaGGGGGCTGAGGAATGCTGG +
Preference number: 4 (lower is better)
Translates to: MPPRCCCWDPFGLRRRQGSGRLF*GAEECW
Trigger: CCAGCATTCCTCAGCCCCTCAGAAGAGCCTTCCAGA...GCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGGTGGCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp GCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCCTCACGCATCAGCTCAATaGTGGCCTCGGGCGAGGGCC +
Preference number: 4 (lower is better)
Translates to: ASRFRLQRCHHDAAAGIPHASAQ*WPRARA
Trigger: GGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTG...AGGGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp CCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCCTTCTCGGCCTAGCCACTTCTTaGGCCACAGGAAGGCACAGA +
Preference number: 4 (lower is better)
Translates to: PRCCCWDPFGLRRRQGLLGLATS*ATGRHR
Trigger: TCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCC...GAGAAGGCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp CCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCCTTCTCCTGATCACACAGAGCTaGTTGGCCCACTGGCCTAGC +
Preference number: 4 (lower is better)
Translates to: PRCCCWDPFGLRRRQGLLLITQS*LAHWPS
Trigger: GCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAG...GAGAAGGCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp ATGCCACCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCGCTTGGTCCTTGCTCTaGAGGCCCAGCACGATAACG +
Preference number: 4 (lower is better)
Translates to: MPPRCCCWDPFGLRRRQGAWSLL*RPSTIT
Trigger: CGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGC...GCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGGTGGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCGCTGCTGGGCCACCTTaGTCCGGTTCCGGTCCTGGT +
Preference number: 4 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSAAGPP*SGSGPG
Trigger: ACCAGGACCGGAACCGGAGCAAGGTGGCCCAGCAGC...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCCTTCTCTCACACAGAGCTGCTTaGCCCACTGGCCTAGCCACT +
Preference number: 4 (lower is better)
Translates to: PRCCCWDPFGLRRRQGLLSHRAA*PTGLAT
Trigger: AGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGA...GAGAAGGCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCAGGCTGAGGGGCTGCTaGGCCACCTTGCTCCGGTTC +
Preference number: 4 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSRLRGC*ATLLRF
Trigger: GAACCGGAGCAAGGTGGCCCAGCAGCCCCTCAGCCT...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp ATGCCACCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCAGGAGGCCTAGCCAGTaGCCCATCTCCTCTGAAGAC +
Preference number: 4 (lower is better)
Translates to: MPPRCCCWDPFGLRRRQGRRPSQ*PISSED
Trigger: GTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCT...GCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGGTGGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp TTGAGGAGGAGACAGGGCCTTCTCTTAACCGAAGCTCCGTTTGCAGCGAGCGCCTCTGGAAGGCTCTTCTaGGGGGCTGAGGAATGCTGG +
Preference number: 4 (lower is better)
Translates to: LRRRQGLLLTEAPFAASASGRLF*GAEECW
Trigger: CCAGCATTCCTCAGCCCCTCAGAAGAGCCTTCCAGA...GGCGCTCGCTGCAAACGGAGCTTCGGTTAAGAGAAGGCCCTGTCTCCTCCTCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGAGAGAGGCCTGCGCCTaGGCCTCACTGCTACTGTGC +
Preference number: 4 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLREACA*ASLLLC
Trigger: GCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCT...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp GCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCCTTGTGCACGACGCTGCTaGCCCGCAGGTTCACGTCCA +
Preference number: 4 (lower is better)
Translates to: ASRFRLQRCHHDAAAGIPCARRC*PAGSRP
Trigger: TGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACA...AGGGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTGAGGAGGAGACAGGGCCTTCTCTTAACCGAAGCTCCGTTTGCAGCGAGCGCCTCTGGTTGCCTCTGCTaGACCTCTGGGTCTCCTGGA +
Preference number: 4 (lower is better)
Translates to: LRRRQGLLLTEAPFAASASGCLC*TSGSPG
Trigger: TCCAGGAGACCCAGAGGTGCAGCAGAGGCAACCAGA...GGCGCTCGCTGCAAACGGAGCTTCGGTTAAGAGAAGGCCCTGTCTCCTCCTCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTGAGGAGGAGACAGGGCCTTCTCTTAACCGAAGCTCCGTTTGCAGCGAGCGCCCTCGGATCTCCTCCTTaGTCCTCTCCAGCCTCTCCT +
Preference number: 4 (lower is better)
Translates to: LRRRQGLLLTEAPFAASALGSPP*SSPASP
Trigger: AGGAGAGGCTGGAGAGGAGCAAGGAGGAGATCCGAG...GGCGCTCGCTGCAAACGGAGCTTCGGTTAAGAGAAGGCCCTGTCTCCTCCTCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCGGCTGGGCTCCCCATTaGTCAGTGGACCCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSGWAPH*SVDPAP
Trigger: AGGAGCAGGGTCCACTGACCAATGGGGAGCCCAGCC...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTCTGATGTGGCACTGCTaGGAGAGAGGCCTGCGCCTG +
Preference number: 4 (lower is better)
Translates to: SDPKGVSALAWFPICPSSLMWHC*ERGLRL
Trigger: CAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAG...AGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCGGGGCTCCTCTGGGGTaGTGCCTGGCTTTGGGTCTA +
Preference number: 4 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSGAPLG*CLALGL
Trigger: TAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCC...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp ATGCCACCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCGTCTGGGCAGTTGGCTaGGAAGGAGATTCTCTGCTG +
Preference number: 4 (lower is better)
Translates to: MPPRCCCWDPFGLRRRQGVWAVG*EGDSLL
Trigger: CAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGAC...GCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGGTGGCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp GCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCCTGTGGGCTGGCAGCGATaGGGGCAGAAGCCATGGTGT +
Preference number: 4 (lower is better)
Translates to: ASRFRLQRCHHDAAAGIPVGWQR*GQKPWC
Trigger: ACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCAC...AGGGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp TTAGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTAGAGAGGCCTGCGCCTaGGCCTCACTGCTACTGTGC +
Preference number: 4 (lower is better)
Translates to: LVTPRGSVPWLGSQYVPLREACA*ASLLLC
Trigger: GCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCT...AAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTAGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTTGTGCACGACGCTGCTaGCCCGCAGGTTCACGTCCA +
Preference number: 4 (lower is better)
Translates to: LVTPRGSVPWLGSQYVPLCARRC*PAGSRP
Trigger: TGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACA...AAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCACCAGGCTGAGGGGCTaGTGGGCCACCTTGCTCCGG +
Preference number: 4 (lower is better)
Translates to: FAASASSLALSCKQTHLSTRLRG*WATLLR
Trigger: CCGGAGCAAGGTGGCCCAGCAGCCCCTCAGCCTGGT...GGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCAGGCCACTCACCTCCTaGATGACCCGAAGCCACTGC +
Preference number: 4 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSRPLTS*MTRSHC
Trigger: GCAGTGGCTTCGGGTCATCCAGGAGGTGAGTGGCCT...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCCTTCTCGCATCTGGTGTGTACTaGTTTCCCTCTGAGGCTCCT +
Preference number: 4 (lower is better)
Translates to: PRCCCWDPFGLRRRQGLLASGVY*FPSEAP
Trigger: AGGAGCCTCAGAGGGAAACCAGTACACACCAGATGC...GAGAAGGCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AAGCTCCGTTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCAGGCTGAGGGGCTGCTaGGCCACCTTGCTCCGGTTC +
Preference number: 4 (lower is better)
Translates to: KLRLQRAPHPLLCLVNRLRLRGC*ATLLRF
Trigger: GAACCGGAGCAAGGTGGCCCAGCAGCCCCTCAGCCT...GAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAACGGAGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCTCAGAGGCTGAGGGGCTGCTaGGCCACCTTGCTCCGGTTC +
Preference number: 4 (lower is better)
Translates to: QRAPHPLLCLVNRLTFPQRLRGC*ATLLRF
Trigger: GAACCGGAGCAAGGTGGCCCAGCAGCCCCTCAGCCT...CTGAGGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTGAGGAGGAGACAGGGCCTTCTCTTAACCGAAGCTCCGTTTGCAGCGAGCGCCCGGAAGGAATACAGGTaGTCGGGGCTAGGATCTGGA +
Preference number: 4 (lower is better)
Translates to: LRRRQGLLLTEAPFAASARKEYR*SGLGSG
Trigger: TCCAGATCCTAGCCCCGACCACCTGTATTCCTTCCG...GGCGCTCGCTGCAAACGGAGCTTCGGTTAAGAGAAGGCCCTGTCTCCTCCTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGCCTGGCAATCCCGGCTaGGCAGGCCATCGATGTATG +
Preference number: 4 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLPGNPG*AGHRCM
Trigger: CATACATCGATGGCCTGCCCAGCCGGGATTGCCAGG...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTAGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTGTGGGCTGGCAGCGATaGGGGCAGAAGCCATGGTGT +
Preference number: 4 (lower is better)
Translates to: LVTPRGSVPWLGSQYVPLVGWQR*GQKPWC
Trigger: ACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCAC...AAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGTCTGGAAGGCTCTTCTaGGGGGCTGAGGAATGCTGG +
Preference number: 4 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLSGRLF*GAEECW
Trigger: CCAGCATTCCTCAGCCCCTCAGAAGAGCCTTCCAGA...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGCTGGTTTCTGACAGTTaGGGCGCTGGGCATCTGGTG +
Preference number: 4 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLLVSDS*GAGHLV
Trigger: CACCAGATGCCCAGCGCCTCAACTGTCAGAAACCAG...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp AGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTCTGGTTTCTGACAGTTaGGGCGCTGGGCATCTGGTG +
Preference number: 4 (lower is better)
Translates to: SDPKGVSALAWFPICPSSLVSDS*GAGHLV
Trigger: CACCAGATGCCCAGCGCCTCAACTGTCAGAAACCAG...AGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp ATGCCACCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCTGCAGGATTCTTCTCTaGACCACCAGACAGCAACAG +
Preference number: 4 (lower is better)
Translates to: MPPRCCCWDPFGLRRRQGCRILL*TTRQQQ
Trigger: CTGTTGCTGTCTGGTGGTGCAGAGAAGAATCCTGCA...GCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGGTGGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111584.9
CDS-3UTR GCA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCTCAGCACGGCTGCACTaGTCAGGTTCTCCTGGTCGA +
Preference number: 4 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSSARLH*SGSPGR
Trigger: TCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGA...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
CDS-3UTR GCA 90 bp GCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCCTTCAGCACGGCTGCACTaGTCAGGTTCTCCTGGTCGA +
Preference number: 4 (lower is better)
Translates to: ASRFRLQRCHHDAAAGIPSARLH*SGSPGR
Trigger: TCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGA...AGGGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
CDS-3UTR GCA 90 bp AGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTGGTAGGGGGCAGCCTTaGCTTTGCTGTTCTCGTCCT +
Preference number: 4 (lower is better)
Translates to: SDPKGVSALAWFPICPSSGRGQP*LCCSRP
Trigger: AGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACC...AGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCGGCCTAGCCACTTCTTaGGCCACAGGAAGGCACAGA +
Preference number: 4 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSGLATS*ATGRHR
Trigger: TCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCC...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp AGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTCTGATCACACAGAGCTaGTTGGCCCACTGGCCTAGC +
Preference number: 4 (lower is better)
Translates to: SDPKGVSALAWFPICPSSLITQS*LAHWPS
Trigger: GCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAG...AGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp AAGCTCCGTTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCTGTGCACGACGCTGCTaGCCCGCAGGTTCACGTCCA +
Preference number: 4 (lower is better)
Translates to: KLRLQRAPHPLLCLVNRLCARRC*PAGSRP
Trigger: TGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACA...GAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAACGGAGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCGCTTGGTCCTTGCTCTaGAGGCCCAGCACGATAACG +
Preference number: 4 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSAWSLL*RPSTIT
Trigger: CGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGC...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp GCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCCTACCTCTGGTTGCCTCTaGTGCACCTCTGGGTCTCCT +
Preference number: 4 (lower is better)
Translates to: ASRFRLQRCHHDAAAGIPTSGCL*CTSGSP
Trigger: AGGAGACCCAGAGGTGCAGCAGAGGCAACCAGAGGT...AGGGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp AGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTCACGGGCCCAGCCTCTaGCTTCTTCAGGTTGTCCTT +
Preference number: 4 (lower is better)
Translates to: SDPKGVSALAWFPICPSSHGPSL*LLQVVL
Trigger: AAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTG...AGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCTCAGGGCTGGGCTCCCCATTaGTCAGTGGACCCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: QRAPHPLLCLVNRLTFPQGWAPH*SVDPAP
Trigger: AGGAGCAGGGTCCACTGACCAATGGGGAGCCCAGCC...CTGAGGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCGAGGCGCTGGGCATCTaGTGTGTACTGGTTTCCCTC +
Preference number: 4 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSEALGI*CVLVSL
Trigger: GAGGGAAACCAGTACACACCAGATGCCCAGCGCCTC...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp GCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCCTAGGAGGCCTAGCCAGTaGCCCATCTCCTCTGAAGAC +
Preference number: 4 (lower is better)
Translates to: ASRFRLQRCHHDAAAGIPRRPSQ*PISSED
Trigger: GTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCT...AGGGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCTCAGCTGATGTGGCACTGCTaGGAGAGAGGCCTGCGCCTG +
Preference number: 4 (lower is better)
Translates to: QRAPHPLLCLVNRLTFPQLMWHC*ERGLRL
Trigger: CAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAG...CTGAGGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGGGTGGTGCCTGGCTTTaGGTCTACTGTGAGGGTCTC +
Preference number: 4 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLGGAWL*VYCEGL
Trigger: GAGACCCTCACAGTAGACCCAAAGCCAGGCACCACC...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCTCAGGGGGCTCCTCTGGGGTaGTGCCTGGCTTTGGGTCTA +
Preference number: 4 (lower is better)
Translates to: QRAPHPLLCLVNRLTFPQGAPLG*CLALGL
Trigger: TAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCC...CTGAGGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR CAA 72 bp ATGCCACCACGATGCTGCTGCTGGGATCCCTTTGGCTaGAGGAGGAGACAGGGCCTTCTCTTAACCGAAGCT +
Preference number: 4 (lower is better)
Translates to: MPPRCCCWDPFG*RRRQGLLLTEA
Trigger: AGCTTCGGTTAAGAGAAGGCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGGTGGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp CAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCTCAGAAGCCGCAGGAGCTCTaGCAGGCCGCTCTTCTTCAG +
Preference number: 4 (lower is better)
Translates to: QRAPHPLLCLVNRLTFPQKPQEL*QAALLQ
Trigger: CTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTT...CTGAGGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
CDS-3UTR TCA 90 bp AGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTCCACATAGTCGTAGGTaGGCTCTTCCGGGTCAGTCT +
Preference number: 4 (lower is better)
Translates to: SDPKGVSALAWFPICPSSPHSRR*ALPGQS
Trigger: AGACTGACCCGGAAGAGCTCACCTACGACTATGTGG...AGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp GCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCCTTCAACAGGGTCTCTTTaGGCTCCCGCTTCTCTCTGC +
Preference number: 4 (lower is better)
Translates to: ASRFRLQRCHHDAAAGIPSTGSL*APASLC
Trigger: GCAGAGAGAAGCGGGAGCTCAAAGAGACCCTGTTGA...AGGGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGTCAACAGGGTCTCTTTaGGCTCCCGCTTCTCTCTGC +
Preference number: 4 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLSTGSL*APASLC
Trigger: GCAGAGAGAAGCGGGAGCTCAAAGAGACCCTGTTGA...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGGGGCAGCCTTGCCTTTaGTGTTCTCGTCCTCATCGT +
Preference number: 4 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLGQPCL*CSRPHR
Trigger: ACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCC...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp AGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACAGGAAGGCACAGATaGGGGCATCACGCATCAGCT +
Preference number: 4 (lower is better)
Translates to: SDPKGVSALAWFPICPSSTGRHR*GHHASA
Trigger: AGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGT...AGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCACAGGAAGGCACAGATaGGGGCATCACGCATCAGCT +
Preference number: 4 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSTGRHR*GHHASA
Trigger: AGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGT...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCATGACCCGAAGCCACTaGTCAGCTTGGTCCTTGCTC +
Preference number: 4 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSMTRSH*SAWSLL
Trigger: GAGCAAGGACCAAGCTGAGCAGTGGCTTCGGGTCAT...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTAGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTCGGATCTCCTCCTTaGTCCTCTCCAGCCTCTCCT +
Preference number: 4 (lower is better)
Translates to: LVTPRGSVPWLGSQYVPLLGSPP*SSPASP
Trigger: AGGAGAGGCTGGAGAGGAGCAAGGAGGAGATCCGAG...AAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTAGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCACGGGCCCAGCCTCTaGCTTCTTCAGGTTGTCCTT +
Preference number: 4 (lower is better)
Translates to: LVTPRGSVPWLGSQYVPLHGPSL*LLQVVL
Trigger: AAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTG...AAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGGGGCGGAGGGAGGTCTaGAAGGCTCTTCTGAGGGGC +
Preference number: 4 (lower is better)
Translates to: LVQSRIVTKVHSHIRVFRGRREV*KALLRG
Trigger: GCCCCTCAGAAGAGCCTTCCAGACCTCCCTCCGCCC...CCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGGGGCTGTTTCCTCTCTaGAATCATCTTGGGCGGAGG +
Preference number: 4 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLGLFPL*NHLGRR
Trigger: CCTCCGCCCAAGATGATTCCAGAGAGGAAACAGCCC...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCGGGCTGTTTCCTCTCTaGAATCATCTTGGGCGGAGG +
Preference number: 4 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSGLFPL*NHLGRR
Trigger: CCTCCGCCCAAGATGATTCCAGAGAGGAAACAGCCC...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTAGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTTCACACAGAGCTGCTTaGCCCACTGGCCTAGCCACT +
Preference number: 4 (lower is better)
Translates to: LVTPRGSVPWLGSQYVPLSHRAA*PTGLAT
Trigger: AGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGA...AAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp ATGCCACCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCCTTCTCAGCTATGTCTaGTTTCTGACAGTTGAGGCG +
Preference number: 4 (lower is better)
Translates to: MPPRCCCWDPFGLRRRQGLLSYV*FLTVEA
Trigger: CGCCTCAACTGTCAGAAACCAGACATAGCTGAGAAG...GCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGGTGGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCCTGATGTGGCACTGCTaGGAGAGAGGCCTGCGCCTG +
Preference number: 4 (lower is better)
Translates to: FAASASSLALSCKQTHLSLMWHC*ERGLRL
Trigger: CAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAG...GGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp GCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCCTTACATCGTCCTGATGTaGCACTGCTGGGAGAGAGGC +
Preference number: 4 (lower is better)
Translates to: ASRFRLQRCHHDAAAGIPYIVLM*HCWERG
Trigger: GCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTA...AGGGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTAGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTGGTGGTGCCTGGCTTTaGGTCTACTGTGAGGGTCTC +
Preference number: 4 (lower is better)
Translates to: LVTPRGSVPWLGSQYVPLGGAWL*VYCEGL
Trigger: GAGACCCTCACAGTAGACCCAAAGCCAGGCACCACC...AAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGAGAAGCCATGGTGTCTaGGCAGTTGGCTGGGAAGGA +
Preference number: 4 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLRSHGV*AVGWEG
Trigger: TCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCT...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTGAGGAGGAGACAGGGCCTTCTCTTAACCGAAGCTCCGTTTGCAGCGAGCGCCTCTTCTCCCATTCCTTaGCTTTCTGCAGGACAGTGC +
Preference number: 4 (lower is better)
Translates to: LRRRQGLLLTEAPFAASASSPIP*LSAGQC
Trigger: GCACTGTCCTGCAGAAAGCCAAGGAATGGGAGAAGA...GGCGCTCGCTGCAAACGGAGCTTCGGTTAAGAGAAGGCCCTGTCTCCTCCTCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp TTGAGGAGGAGACAGGGCCTTCTCTTAACCGAAGCTCCGTTTGCAGCGAGCGCCGTATGTGTTGGGCTCTaGGAACTTTCTCTGCATCAG +
Preference number: 4 (lower is better)
Translates to: LRRRQGLLLTEAPFAASAVCVGL*ELSLHQ
Trigger: CTGATGCAGAGAAAGTTCTCAGAGCCCAACACATAC...GGCGCTCGCTGCAAACGGAGCTTCGGTTAAGAGAAGGCCCTGTCTCCTCCTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGAGGGAAGCAGAGACCTaGAGGATTCTTCTCTGCACC +
Preference number: 4 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLREAET*RILLCT
Trigger: GGTGCAGAGAAGAATCCTGCAGGTCTCTGCTTCCCT...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111584.9
CDS-3UTR GCA 90 bp TTGAAGACTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCACGCATCAGCTCAATaGTGGCCTCGGGCGAGGGCC +
Preference number: 4 (lower is better)
Translates to: LKTCPEQDCHQGPQSHKSHASAQ*WPRARA
Trigger: GGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTG...ACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAGTCTTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp CAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCTCAGACCTCTGGTTGCCTCTaGTGCACCTCTGGGTCTCCT +
Preference number: 4 (lower is better)
Translates to: QRAPHPLLCLVNRLTFPQTSGCL*CTSGSP
Trigger: AGGAGACCCAGAGGTGCAGCAGAGGCAACCAGAGGT...CTGAGGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCAGCTGCTTGGCCCACTaGCCTAGCCACTTCTTGCGC +
Preference number: 4 (lower is better)
Translates to: FAASASSLALSCKQTHLSSCLAH*PSHFLR
Trigger: GCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCT...GGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp ATGCCACCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCGAGGACTGTGGTCTTTaGACGATTTGTAGCACAAGA +
Preference number: 4 (lower is better)
Translates to: MPPRCCCWDPFGLRRRQGEDCGL*TICSTR
Trigger: TCTTGTGCTACAAATCGTCCAAAGACCACAGTCCTC...GCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGGTGGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCGACATCTTTGGTCTCTaGGATCTCAGGGTGGCCGTT +
Preference number: 4 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSDIFGL*DLRVAV
Trigger: AACGGCCACCCTGAGATCCCAGAGACCAAAGATGTC...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTAGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTACTTGGCCTCAAGCTTaGCTAGCTCCTCGCCGTTGT +
Preference number: 4 (lower is better)
Translates to: LVTPRGSVPWLGSQYVPLTWPQA*LAPRRC
Trigger: ACAACGGCGAGGAGCTAGCCAAGCTTGAGGCCAAGT...AAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AAGCTCCGTTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCCTTCCGGGTCAGTCTTaGAGCCCGACTCTGAGAGCA +
Preference number: 4 (lower is better)
Translates to: KLRLQRAPHPLLCLVNRLLPGQS*SPTLRA
Trigger: TGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAG...GAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAACGGAGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp GCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCCTAGACTCTTGAACCTCTaGTTGCCTCTGCTGCACCTC +
Preference number: 4 (lower is better)
Translates to: ASRFRLQRCHHDAAAGIPRLLNL*LPLLHL
Trigger: GAGGTGCAGCAGAGGCAACCAGAGGTTCAAGAGTCT...AGGGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGAGACTCTTGAACCTCTaGTTGCCTCTGCTGCACCTC +
Preference number: 4 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLRLLNL*LPLLHL
Trigger: GAGGTGCAGCAGAGGCAACCAGAGGTTCAAGAGTCT...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCCTTCACAGGTGGGCTaGCAGCGATGGGGGCAGAAG +
Preference number: 4 (lower is better)
Translates to: LVQSRIVTKVHSHIRVFRPSQVG*QRWGQK
Trigger: CTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGG...CCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp CAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCTCAGGTACTGGTTTCCCTCTaGGGCTCCTTCAGAAGGCAG +
Preference number: 4 (lower is better)
Translates to: QRAPHPLLCLVNRLTFPQVLVSL*GSFRRQ
Trigger: CTGCCTTCTGAAGGAGCCTCAGAGGGAAACCAGTAC...CTGAGGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp AAGCTCCGTTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCGTGGCCCATCTCCTCTaGAGACTTGGCCTCAAGCTT +
Preference number: 4 (lower is better)
Translates to: KLRLQRAPHPLLCLVNRLVAHLL*RLGLKL
Trigger: AAGCTTGAGGCCAAGTCTTCAGAGGAGATGGGCCAC...GAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAACGGAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp CAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCTCAGCCACATAGTCGTAGGTaGGCTCTTCCGGGTCAGTCT +
Preference number: 4 (lower is better)
Translates to: QRAPHPLLCLVNRLTFPQPHSRR*ALPGQS
Trigger: AGACTGACCCGGAAGAGCTCACCTACGACTATGTGG...CTGAGGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp CAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCTCAGCTTCTTCAGCACGGCTaGACTGCTCAGGTTCTCCTG +
Preference number: 4 (lower is better)
Translates to: QRAPHPLLCLVNRLTFPQLLQHG*TAQVLL
Trigger: CAGGAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAG...CTGAGGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
CDS-3UTR GCA 90 bp CAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCTCAGGGGCAGCCTTGCCTTTaGTGTTCTCGTCCTCATCGT +
Preference number: 4 (lower is better)
Translates to: QRAPHPLLCLVNRLTFPQGQPCL*CSRPHR
Trigger: ACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCC...CTGAGGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCGGTAGGGGGCAGCCTTaGCTTTGCTGTTCTCGTCCT +
Preference number: 4 (lower is better)
Translates to: FAASASSLALSCKQTHLSGRGQP*LCCSRP
Trigger: AGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACC...GGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTGAAGACTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTGGGGCTGAGGAATGCTaGCTGGGCTCCCCATTGGTC +
Preference number: 4 (lower is better)
Translates to: LKTCPEQDCHQGPQSHKSGAEEC*LGSPLV
Trigger: GACCAATGGGGAGCCCAGCCAGCATTCCTCAGCCCC...ACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAGTCTTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AATGTATCAACTTGTGCTAGTGCTGTCCCAGAGAGACAGCACATAAAGACAGCAGGGCGGAGGGAGGTCTaGAAGGCTCTTCTGAGGGGC +
Preference number: 4 (lower is better)
Translates to: NVSTCASAVPERQHIKTAGRREV*KALLRG
Trigger: GCCCCTCAGAAGAGCCTTCCAGACCTCCCTCCGCCC...TGCTGTCTTTATGTGCTGTCTCTCTGGGACAGCACTAGCACAAGTTGATACATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTGAAGACTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTGCATCAGCTCAATGCTaGCCTCGGGCGAGGGCCACT +
Preference number: 4 (lower is better)
Translates to: LKTCPEQDCHQGPQSHKSASAQC*PRARAT
Trigger: AGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGC...ACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAGTCTTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCTCAGCGGAAGGAATACAGGTaGTCGGGGCTAGGATCTGGA +
Preference number: 4 (lower is better)
Translates to: QRAPHPLLCLVNRLTFPQRKEYR*SGLGSG
Trigger: TCCAGATCCTAGCCCCGACCACCTGTATTCCTTCCG...CTGAGGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTAGCTCCTCGCCGTTGTaGAGAATACGGAAGGAATAC +
Preference number: 4 (lower is better)
Translates to: SDPKGVSALAWFPICPSSSSSPL*RIRKEY
Trigger: GTATTCCTTCCGTATTCTCCACAACGGCGAGGAGCT...AGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGTCTCCTCTGAAGACTTaGCCTCAAGCTTGGCTAGCT +
Preference number: 4 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLSPLKT*PQAWLA
Trigger: AGCTAGCCAAGCTTGAGGCCAAGTCTTCAGAGGAGA...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AAGCTCCGTTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCTACATCGTCCTGATGTaGCACTGCTGGGAGAGAGGC +
Preference number: 4 (lower is better)
Translates to: KLRLQRAPHPLLCLVNRLYIVLM*HCWERG
Trigger: GCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTA...GAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAACGGAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCCCTCTGCTGCACCTCTaGGTCTCCTGGAGACTCTGT +
Preference number: 4 (lower is better)
Translates to: FAASASSLALSCKQTHLSPLLHL*VSWRLC
Trigger: ACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAGAGG...GGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTAGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTTGGTGTCTGGGCAGTTaGCTGGGAAGGAGATTCTCT +
Preference number: 4 (lower is better)
Translates to: LVTPRGSVPWLGSQYVPLWCLGS*LGRRFS
Trigger: AGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCA...AAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AAGCTCCGTTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCAGAAGCCATGGTGTCTaGGCAGTTGGCTGGGAAGGA +
Preference number: 4 (lower is better)
Translates to: KLRLQRAPHPLLCLVNRLRSHGV*AVGWEG
Trigger: TCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCT...GAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAACGGAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTGAAGACTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCCTTCACAGGTGGGCTaGCAGCGATGGGGGCAGAAG +
Preference number: 4 (lower is better)
Translates to: LKTCPEQDCHQGPQSHKSPSQVG*QRWGQK
Trigger: CTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGG...ACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAGTCTTCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGTCTTCTCCCATTCCTTaGCTTTCTGCAGGACAGTGC +
Preference number: 4 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLSSPIP*LSAGQC
Trigger: GCACTGTCCTGCAGAAAGCCAAGGAATGGGAGAAGA...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp GCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCCTCCTCTCCATCCTCATTaGTGGATCTGTCAAATGGCT +
Preference number: 4 (lower is better)
Translates to: ASRFRLQRCHHDAAAGIPPLHPH*WICQMA
Trigger: AGCCATTTGACAGATCCATCAATGAGGATGGAGAGG...AGGGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp TTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCAGGTTCACGTCCAGCTaGGGACTGTGGTCTTTGGAC +
Preference number: 4 (lower is better)
Translates to: FAASASSLALSCKQTHLSRFTSS*GLWSLD
Trigger: GTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCT...GGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGGTATGTGTTGGGCTCTaGGAACTTTCTCTGCATCAG +
Preference number: 4 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLVCVGL*ELSLHQ
Trigger: CTGATGCAGAGAAAGTTCTCAGAGCCCAACACATAC...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp AATGTATCAACTTGTGCTAGTGCTGTCCCAGAGAGACAGCACATAAAGACAGCAAGAGAGGCCTGCGCCTaGGCCTCACTGCTACTGTGC +
Preference number: 4 (lower is better)
Translates to: NVSTCASAVPERQHIKTAREACA*ASLLLC
Trigger: GCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCT...TGCTGTCTTTATGTGCTGTCTCTCTGGGACAGCACTAGCACAAGTTGATACATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCAGGACTCGTAGGAGCTaGTCACAGCCTCTCCATCCT +
Preference number: 4 (lower is better)
Translates to: FAASASSLALSCKQTHLSRTRRS*SQPLHP
Trigger: AGGATGGAGAGGCTGTGAGCAGCTCCTACGAGTCCT...GGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp AGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCAATTCTTGTCTCACGCATCAGCTCAATaGTGGCCTCGGGCGAGGGCC +
Preference number: 4 (lower is better)
Translates to: RIVTKVHSHIRVFRQFLSHASAQ*WPRARA
Trigger: GGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTG...AGACAAGAATTGCCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTGAAGACTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTGCTCAGCTTGGTCCTTaGTCTGCAGGCCCAGCACGA +
Preference number: 4 (lower is better)
Translates to: LKTCPEQDCHQGPQSHKSAQLGP*SAGPAR
Trigger: TCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGC...ACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAGTCTTCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCGCTGCTGGGCCACCTTaGTCCGGTTCCGGTCCTGGT +
Preference number: 4 (lower is better)
Translates to: LAWFPICPSSTDYRVLMFAAGPP*SGSGPG
Trigger: ACCAGGACCGGAACCGGAGCAAGGTGGCCCAGCAGC...GAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAACCAAGCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp CCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCCTTCTCTCTGAGAACTTTCTCTaGATCAGTAAGAGAGAGGTT +
Preference number: 4 (lower is better)
Translates to: PRCCCWDPFGLRRRQGLLSENFL*ISKREV
Trigger: AACCTCTCTCTTACTGATGCAGAGAAAGTTCTCAGA...GAGAAGGCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCCCCAAGTTTGATCTCTaGACTGGTCACTCTCAGCTT +
Preference number: 4 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSPKFDL*TGHSQL
Trigger: AAGCTGAGAGTGACCAGTGCAGAGATCAAACTTGGG...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp CTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCACGGGCCCAGCCTCTaGCTTCTTCAGGTTGTCCTT +
Preference number: 4 (lower is better)
Translates to: LVQSRIVTKVHSHIRVFRHGPSL*LLQVVL
Trigger: AAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTG...CCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AAGCTCCGTTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCCAGAACTGCTGCTCTTaGTGTAAAGCCGCAGGAGCT +
Preference number: 4 (lower is better)
Translates to: KLRLQRAPHPLLCLVNRLQNCCS*CKAAGA
Trigger: AGCTCCTGCGGCTTTACACCAAGAGCAGCAGTTCTG...GAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAACGGAGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
CDS-3UTR CCA 90 bp AATGTATCAACTTGTGCTAGTGCTGTCCCAGAGAGACAGCACATAAAGACAGCAGGGGCTGAGGAATGCTaGCTGGGCTCCCCATTGGTC +
Preference number: 4 (lower is better)
Translates to: NVSTCASAVPERQHIKTAGAEEC*LGSPLV
Trigger: GACCAATGGGGAGCCCAGCCAGCATTCCTCAGCCCC...TGCTGTCTTTATGTGCTGTCTCTCTGGGACAGCACTAGCACAAGTTGATACATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGTCACACAGAGCTGCTTaGCCCACTGGCCTAGCCACT +
Preference number: 4 (lower is better)
Translates to: LVQSRIVTKVHSHIRVFRSHRAA*PTGLAT
Trigger: AGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGA...CCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGGCACATTCAGGTAGCTaGATGTCTCAAGGGATCTCT +
Preference number: 4 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLAHSGS*MSQGIS
Trigger: AGAGATCCCTTGAGACATCCAGCTACCTGAATGTGC...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGAGGAGGCCTAGCCAGTaGCCCATCTCCTCTGAAGAC +
Preference number: 4 (lower is better)
Translates to: LVQSRIVTKVHSHIRVFRRRPSQ*PISSED
Trigger: GTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCT...CCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp GCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCCTGTAAGAGAGAGGTTTTaGCCGCACTCACAATACAGG +
Preference number: 4 (lower is better)
Translates to: ASRFRLQRCHHDAAAGIPVRERF*PHSQYR
Trigger: CCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTTAC...AGGGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGGTAAGAGAGAGGTTTTaGCCGCACTCACAATACAGG +
Preference number: 4 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLVRERF*PHSQYR
Trigger: CCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTTAC...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCTACATCGTCCTGATGTaGCACTGCTGGGAGAGAGGC +
Preference number: 4 (lower is better)
Translates to: FAASASSLALSCKQTHLSYIVLM*HCWERG
Trigger: GCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTA...GGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCTCAGTGGTGTCTGGGCAGTTaGCTGGGAAGGAGATTCTCT +
Preference number: 4 (lower is better)
Translates to: QRAPHPLLCLVNRLTFPQWCLGS*LGRRFS
Trigger: AGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCA...CTGAGGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp CTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGGGGCAGCCTTGCCTTTaGTGTTCTCGTCCTCATCGT +
Preference number: 4 (lower is better)
Translates to: LVQSRIVTKVHSHIRVFRGQPCL*CSRPHR
Trigger: ACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCC...CCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTGAAGACTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTGGCCTAGCCACTTCTTaGGCCACAGGAAGGCACAGA +
Preference number: 4 (lower is better)
Translates to: LKTCPEQDCHQGPQSHKSGLATS*ATGRHR
Trigger: TCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCC...ACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAGTCTTCAA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp AATGTATCAACTTGTGCTAGTGCTGTCCCAGAGAGACAGCACATAAAGACAGCAGCTCAGCTTGGTCCTTaGTCTGCAGGCCCAGCACGA +
Preference number: 4 (lower is better)
Translates to: NVSTCASAVPERQHIKTAAQLGP*SAGPAR
Trigger: TCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGC...TGCTGTCTTTATGTGCTGTCTCTCTGGGACAGCACTAGCACAAGTTGATACATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AATGTATCAACTTGTGCTAGTGCTGTCCCAGAGAGACAGCACATAAAGACAGCACTCCCCATTGGTCAGTaGACCCTGCTCCTCGGGAAC +
Preference number: 4 (lower is better)
Translates to: NVSTCASAVPERQHIKTALPIGQ*TLLLGN
Trigger: GTTCCCGAGGAGCAGGGTCCACTGACCAATGGGGAG...TGCTGTCTTTATGTGCTGTCTCTCTGGGACAGCACTAGCACAAGTTGATACATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCAATTCTTGTCTGGGGCTGAGGAATGCTaGCTGGGCTCCCCATTGGTC +
Preference number: 4 (lower is better)
Translates to: RIVTKVHSHIRVFRQFLSGAEEC*LGSPLV
Trigger: GACCAATGGGGAGCCCAGCCAGCATTCCTCAGCCCC...AGACAAGAATTGCCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACGGGCGGAGGGAGGTCTaGAAGGCTCTTCTGAGGGGC +
Preference number: 4 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDGRREV*KALLRG
Trigger: GCCCCTCAGAAGAGCCTTCCAGACCTCCCTCCGCCC...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AAGCTCCGTTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCCGATCTTTGGAACGGTaGGCTGTTTCCTCTCTGGAA +
Preference number: 4 (lower is better)
Translates to: KLRLQRAPHPLLCLVNRLRSLER*AVSSLE
Trigger: TTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCG...GAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAACGGAGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCGCATCAGCTCAATGCTaGCCTCGGGCGAGGGCCACT +
Preference number: 4 (lower is better)
Translates to: LAWFPICPSSTDYRVLMFASAQC*PRARAT
Trigger: AGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGC...GAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAACCAAGCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTGAGGACTGTGGTCTTTaGACGATTTGTAGCACAAGA +
Preference number: 4 (lower is better)
Translates to: SDPKGVSALAWFPICPSSEDCGL*TICSTR
Trigger: TCTTGTGCTACAAATCGTCCAAAGACCACAGTCCTC...AGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCGACATCTTTGGTCTCTaGGATCTCAGGGTGGCCGTT +
Preference number: 4 (lower is better)
Translates to: FAASASSLALSCKQTHLSDIFGL*DLRVAV
Trigger: AACGGCCACCCTGAGATCCCAGAGACCAAAGATGTC...GGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AAGCTCCGTTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCTCTCCTCTGAAGACTTaGCCTCAAGCTTGGCTAGCT +
Preference number: 4 (lower is better)
Translates to: KLRLQRAPHPLLCLVNRLSPLKT*PQAWLA
Trigger: AGCTAGCCAAGCTTGAGGCCAAGTCTTCAGAGGAGA...GAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAACGGAGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTGAAGACTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCCTCTGCTGCACCTCTaGGTCTCCTGGAGACTCTGT +
Preference number: 4 (lower is better)
Translates to: LKTCPEQDCHQGPQSHKSPLLHL*VSWRLC
Trigger: ACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAGAGG...ACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAGTCTTCAA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCCCTTCACAGGTGGGCTaGCAGCGATGGGGGCAGAAG +
Preference number: 4 (lower is better)
Translates to: LAWFPICPSSTDYRVLMFPSQVG*QRWGQK
Trigger: CTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGG...GAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAACCAAGCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
3UTR CAA 72 bp GAAGCTCCGTTTGCAGCGAGCGCCTCATCCCTTGCTTaGTCTTGTAAACAGACTCACCTTTCCTCAGAGTTG +
Preference number: 4 (lower is better)
Translates to: EAPFAASASSLA*SCKQTHLSSEL
Trigger: CAACTCTGAGGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAACGGAGCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp TTGAAGACTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTAGGTTCACGTCCAGCTaGGGACTGTGGTCTTTGGAC +
Preference number: 4 (lower is better)
Translates to: LKTCPEQDCHQGPQSHKSRFTSS*GLWSLD
Trigger: GTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCT...ACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAGTCTTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp TTGAAGACTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCCACATAGTCGTAGGTaGGCTCTTCCGGGTCAGTCT +
Preference number: 4 (lower is better)
Translates to: LKTCPEQDCHQGPQSHKSPHSRR*ALPGQS
Trigger: AGACTGACCCGGAAGAGCTCACCTACGACTATGTGG...ACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAGTCTTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTGAAGACTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTAGGACTCGTAGGAGCTaGTCACAGCCTCTCCATCCT +
Preference number: 4 (lower is better)
Translates to: LKTCPEQDCHQGPQSHKSRTRRS*SQPLHP
Trigger: AGGATGGAGAGGCTGTGAGCAGCTCCTACGAGTCCT...ACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAGTCTTCAA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCGCTGCTGGGCCACCTTaGTCCGGTTCCGGTCCTGGT +
Preference number: 4 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTAAGPP*SGSGPG
Trigger: ACCAGGACCGGAACCGGAGCAAGGTGGCCCAGCAGC...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTGAAGACTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTGGGCTGTTTCCTCTCTaGAATCATCTTGGGCGGAGG +
Preference number: 4 (lower is better)
Translates to: LKTCPEQDCHQGPQSHKSGLFPL*NHLGRR
Trigger: CCTCCGCCCAAGATGATTCCAGAGAGGAAACAGCCC...ACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAGTCTTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGGCATCTGGTGTGTACTaGTTTCCCTCTGAGGCTCCT +
Preference number: 4 (lower is better)
Translates to: LVQSRIVTKVHSHIRVFRASGVY*FPSEAP
Trigger: AGGAGCCTCAGAGGGAAACCAGTACACACCAGATGC...CCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AATGTATCAACTTGTGCTAGTGCTGTCCCAGAGAGACAGCACATAAAGACAGCAGAGGCGCTGGGCATCTaGTGTGTACTGGTTTCCCTC +
Preference number: 4 (lower is better)
Translates to: NVSTCASAVPERQHIKTAEALGI*CVLVSL
Trigger: GAGGGAAACCAGTACACACCAGATGCCCAGCGCCTC...TGCTGTCTTTATGTGCTGTCTCTCTGGGACAGCACTAGCACAAGTTGATACATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGGACATCTTTGGTCTCTaGGATCTCAGGGTGGCCGTT +
Preference number: 4 (lower is better)
Translates to: LVQSRIVTKVHSHIRVFRDIFGL*DLRVAV
Trigger: AACGGCCACCCTGAGATCCCAGAGACCAAAGATGTC...CCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCTCAGGCACATTCAGGTAGCTaGATGTCTCAAGGGATCTCT +
Preference number: 4 (lower is better)
Translates to: QRAPHPLLCLVNRLTFPQAHSGS*MSQGIS
Trigger: AGAGATCCCTTGAGACATCCAGCTACCTGAATGTGC...CTGAGGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTGAAGACTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTACTTGGCCTCAAGCTTaGCTAGCTCCTCGCCGTTGT +
Preference number: 4 (lower is better)
Translates to: LKTCPEQDCHQGPQSHKSTWPQA*LAPRRC
Trigger: ACAACGGCGAGGAGCTAGCCAAGCTTGAGGCCAAGT...ACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAGTCTTCAA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCCCTGGCAATCCCGGCTaGGCAGGCCATCGATGTATG +
Preference number: 4 (lower is better)
Translates to: LAWFPICPSSTDYRVLMFPGNPG*AGHRCM
Trigger: CATACATCGATGGCCTGCCCAGCCGGGATTGCCAGG...GAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAACCAAGCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACAAGCCGCAGGAGCTCTaGCAGGCCGCTCTTCTTCAG +
Preference number: 4 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDKPQEL*QAALLQ
Trigger: CTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTT...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
CDS-3UTR TCA 90 bp TTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCGCACAGATGCAGAGTTaGCTGGCGTGGAGTCTGGTG +
Preference number: 4 (lower is better)
Translates to: LAWFPICPSSTDYRVLMFAQMQS*LAWSLV
Trigger: CACCAGACTCCACGCCAGTCAACTCTGCATCTGTGC...GAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAACCAAGCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp AGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCAATTCTTGTCTGCACAGATGCAGAGTTaGCTGGCGTGGAGTCTGGTG +
Preference number: 4 (lower is better)
Translates to: RIVTKVHSHIRVFRQFLSAQMQS*LAWSLV
Trigger: CACCAGACTCCACGCCAGTCAACTCTGCATCTGTGC...AGACAAGAATTGCCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCGGTAGGGGGCAGCCTTaGCTTTGCTGTTCTCGTCCT +
Preference number: 4 (lower is better)
Translates to: LAWFPICPSSTDYRVLMFGRGQP*LCCSRP
Trigger: AGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACC...GAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAACCAAGCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCCTGATCACACAGAGCTaGTTGGCCCACTGGCCTAGC +
Preference number: 4 (lower is better)
Translates to: LAWFPICPSSTDYRVLMFLITQS*LAHWPS
Trigger: GCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAG...GAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAACCAAGCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCGCTTGGTCCTTGCTCTaGAGGCCCAGCACGATAACG +
Preference number: 4 (lower is better)
Translates to: LAWFPICPSSTDYRVLMFAWSLL*RPSTIT
Trigger: CGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGC...GAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAACCAAGCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACGCTCAGCTTGGTCCTTaGTCTGCAGGCCCAGCACGA +
Preference number: 4 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDAQLGP*SAGPAR
Trigger: TCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGC...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp GCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCCTTCTGAGAACTTTCTCTaGATCAGTAAGAGAGAGGTT +
Preference number: 4 (lower is better)
Translates to: ASRFRLQRCHHDAAAGIPSENFL*ISKREV
Trigger: AACCTCTCTCTTACTGATGCAGAGAAAGTTCTCAGA...AGGGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp AGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCAATTCTTGTCTTCTGGTTGCCTCTGCTaGACCTCTGGGTCTCCTGGA +
Preference number: 4 (lower is better)
Translates to: RIVTKVHSHIRVFRQFLSSGCLC*TSGSPG
Trigger: TCCAGGAGACCCAGAGGTGCAGCAGAGGCAACCAGA...AGACAAGAATTGCCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCGGCTGGGCTCCCCATTaGTCAGTGGACCCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTGWAPH*SVDPAP
Trigger: AGGAGCAGGGTCCACTGACCAATGGGGAGCCCAGCC...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCGATCTTTGGAACGGTaGGCTGTTTCCTCTCTGGAA +
Preference number: 4 (lower is better)
Translates to: LVQSRIVTKVHSHIRVFRRSLER*AVSSLE
Trigger: TTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCG...CCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp CAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCTCAGGAGGACTGTGGTCTTTaGACGATTTGTAGCACAAGA +
Preference number: 4 (lower is better)
Translates to: QRAPHPLLCLVNRLTFPQEDCGL*TICSTR
Trigger: TCTTGTGCTACAAATCGTCCAAAGACCACAGTCCTC...CTGAGGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCAATTCTTGTCTGAGGCGCTGGGCATCTaGTGTGTACTGGTTTCCCTC +
Preference number: 4 (lower is better)
Translates to: RIVTKVHSHIRVFRQFLSEALGI*CVLVSL
Trigger: GAGGGAAACCAGTACACACCAGATGCCCAGCGCCTC...AGACAAGAATTGCCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCAATTCTTGTCTCTTCCGGGTCAGTCTTaGAGCCCGACTCTGAGAGCA +
Preference number: 4 (lower is better)
Translates to: RIVTKVHSHIRVFRQFLSLPGQS*SPTLRA
Trigger: TGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAG...AGACAAGAATTGCCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCGGGGCTCCTCTGGGGTaGTGCCTGGCTTTGGGTCTA +
Preference number: 4 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTGAPLG*CLALGL
Trigger: TAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCC...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCAATTCTTGTCTCCTCTGCTGCACCTCTaGGTCTCCTGGAGACTCTGT +
Preference number: 4 (lower is better)
Translates to: RIVTKVHSHIRVFRQFLSPLLHL*VSWRLC
Trigger: ACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAGAGG...AGACAAGAATTGCCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCGTGGGCTGGCAGCGATaGGGGCAGAAGCCATGGTGT +
Preference number: 4 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTVGWQR*GQKPWC
Trigger: ACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCAC...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp AGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCAATTCTTGTCTAGGTTCACGTCCAGCTaGGGACTGTGGTCTTTGGAC +
Preference number: 4 (lower is better)
Translates to: RIVTKVHSHIRVFRQFLSRFTSS*GLWSLD
Trigger: GTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCT...AGACAAGAATTGCCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp AGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCAATTCTTGTCTGTACTGGTTTCCCTCTaGGGCTCCTTCAGAAGGCAG +
Preference number: 4 (lower is better)
Translates to: RIVTKVHSHIRVFRQFLSVLVSL*GSFRRQ
Trigger: CTGCCTTCTGAAGGAGCCTCAGAGGGAAACCAGTAC...AGACAAGAATTGCCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACGCACAGATGCAGAGTTaGCTGGCGTGGAGTCTGGTG +
Preference number: 4 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDAQMQS*LAWSLV
Trigger: CACCAGACTCCACGCCAGTCAACTCTGCATCTGTGC...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCATGACCCGAAGCCACTaGTCAGCTTGGTCCTTGCTC +
Preference number: 4 (lower is better)
Translates to: LAWFPICPSSTDYRVLMFMTRSH*SAWSLL
Trigger: GAGCAAGGACCAAGCTGAGCAGTGGCTTCGGGTCAT...GAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAACCAAGCCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCAGCTGCTTGGCCCACTaGCCTAGCCACTTCTTGCGC +
Preference number: 4 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTSCLAH*PSHFLR
Trigger: GCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCT...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCAGGCCACTCACCTCCTaGATGACCCGAAGCCACTGC +
Preference number: 4 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTRPLTS*MTRSHC
Trigger: GCAGTGGCTTCGGGTCATCCAGGAGGTGAGTGGCCT...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACCTTCCGGGTCAGTCTTaGAGCCCGACTCTGAGAGCA +
Preference number: 4 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDLPGQS*SPTLRA
Trigger: TGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAG...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AATGTATCAACTTGTGCTAGTGCTGTCCCAGAGAGACAGCACATAAAGACAGCAAGACTCTTGAACCTCTaGTTGCCTCTGCTGCACCTC +
Preference number: 4 (lower is better)
Translates to: NVSTCASAVPERQHIKTARLLNL*LPLLHL
Trigger: GAGGTGCAGCAGAGGCAACCAGAGGTTCAAGAGTCT...TGCTGTCTTTATGTGCTGTCTCTCTGGGACAGCACTAGCACAAGTTGATACATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTGAAGACTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTTCTTCTCCCATTCCTTaGCTTTCTGCAGGACAGTGC +
Preference number: 4 (lower is better)
Translates to: LKTCPEQDCHQGPQSHKSSSPIP*LSAGQC
Trigger: GCACTGTCCTGCAGAAAGCCAAGGAATGGGAGAAGA...ACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAGTCTTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACGTACTGGTTTCCCTCTaGGGCTCCTTCAGAAGGCAG +
Preference number: 4 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDVLVSL*GSFRRQ
Trigger: CTGCCTTCTGAAGGAGCCTCAGAGGGAAACCAGTAC...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACGTGGCCCATCTCCTCTaGAGACTTGGCCTCAAGCTT +
Preference number: 4 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDVAHLL*RLGLKL
Trigger: AAGCTTGAGGCCAAGTCTTCAGAGGAGATGGGCCAC...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp TTGAAGACTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTGTATGTGTTGGGCTCTaGGAACTTTCTCTGCATCAG +
Preference number: 4 (lower is better)
Translates to: LKTCPEQDCHQGPQSHKSVCVGL*ELSLHQ
Trigger: CTGATGCAGAGAAAGTTCTCAGAGCCCAACACATAC...ACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAGTCTTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACTCAACAGGGTCTCTTTaGGCTCCCGCTTCTCTCTGC +
Preference number: 4 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDSTGSL*APASLC
Trigger: GCAGAGAGAAGCGGGAGCTCAAAGAGACCCTGTTGA...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCTCTGGTTGCCTCTGCTaGACCTCTGGGTCTCCTGGA +
Preference number: 4 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTSGCLC*TSGSPG
Trigger: TCCAGGAGACCCAGAGGTGCAGCAGAGGCAACCAGA...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AATGTATCAACTTGTGCTAGTGCTGTCCCAGAGAGACAGCACATAAAGACAGCACGATCTTTGGAACGGTaGGCTGTTTCCTCTCTGGAA +
Preference number: 4 (lower is better)
Translates to: NVSTCASAVPERQHIKTARSLER*AVSSLE
Trigger: TTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCG...TGCTGTCTTTATGTGCTGTCTCTCTGGGACAGCACTAGCACAAGTTGATACATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCGCATCTGGTGTGTACTaGTTTCCCTCTGAGGCTCCT +
Preference number: 4 (lower is better)
Translates to: LAWFPICPSSTDYRVLMFASGVY*FPSEAP
Trigger: AGGAGCCTCAGAGGGAAACCAGTACACACCAGATGC...GAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAACCAAGCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTGAAGACTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTCTCAGCTATGTCTaGTTTCTGACAGTTGAGGCG +
Preference number: 4 (lower is better)
Translates to: LKTCPEQDCHQGPQSHKSLLSYV*FLTVEA
Trigger: CGCCTCAACTGTCAGAAACCAGACATAGCTGAGAAG...ACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAGTCTTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACCGGAAGGAATACAGGTaGTCGGGGCTAGGATCTGGA +
Preference number: 4 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDRKEYR*SGLGSG
Trigger: TCCAGATCCTAGCCCCGACCACCTGTATTCCTTCCG...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACGTCTGGGCAGTTGGCTaGGAAGGAGATTCTCTGCTG +
Preference number: 4 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDVWAVG*EGDSLL
Trigger: CAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGAC...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACAGAAGCCATGGTGTCTaGGCAGTTGGCTGGGAAGGA +
Preference number: 4 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDRSHGV*AVGWEG
Trigger: TCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCT...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp TTGAAGACTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCAGAGCATTTCTTCTTaGCATCTTTGGTCTCTGGGA +
Preference number: 4 (lower is better)
Translates to: LKTCPEQDCHQGPQSHKSQSISS*HLWSLG
Trigger: TCCCAGAGACCAAAGATGTCAAGAAGAAATGCTCTG...ACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAGTCTTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCGTGGCCCATCTCCTCTaGAGACTTGGCCTCAAGCTT +
Preference number: 4 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTVAHLL*RLGLKL
Trigger: AAGCTTGAGGCCAAGTCTTCAGAGGAGATGGGCCAC...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCACAGGAAGGCACAGATaGGGGCATCACGCATCAGCT +
Preference number: 4 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTTGRHR*GHHASA
Trigger: AGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGT...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp AATGTATCAACTTGTGCTAGTGCTGTCCCAGAGAGACAGCACATAAAGACAGCACCCAAGTTTGATCTCTaGACTGGTCACTCTCAGCTT +
Preference number: 4 (lower is better)
Translates to: NVSTCASAVPERQHIKTAPKFDL*TGHSQL
Trigger: AAGCTGAGAGTGACCAGTGCAGAGATCAAACTTGGG...TGCTGTCTTTATGTGCTGTCTCTCTGGGACAGCACTAGCACAAGTTGATACATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACCTGCTCAGGTTCTCCTaGTCGAGGACCTTAAGGAAG +
Preference number: 4 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDLLRFS*SRTLRK
Trigger: CTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAG...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
CDS-3UTR CCA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCACTTGGCCTCAAGCTTaGCTAGCTCCTCGCCGTTGT +
Preference number: 4 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTTWPQA*LAPRRC
Trigger: ACAACGGCGAGGAGCTAGCCAAGCTTGAGGCCAAGT...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCGTCTGGGCAGTTGGCTaGGAAGGAGATTCTCTGCTG +
Preference number: 4 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTVWAVG*EGDSLL
Trigger: CAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGAC...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp TTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCCCTCTCCATCCTCATTaGTGGATCTGTCAAATGGCT +
Preference number: 4 (lower is better)
Translates to: LAWFPICPSSTDYRVLMFPLHPH*WICQMA
Trigger: AGCCATTTGACAGATCCATCAATGAGGATGGAGAGG...GAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAACCAAGCCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCCTGCTCAGGTTCTCCTaGTCGAGGACCTTAAGGAAG +
Preference number: 4 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTLLRFS*SRTLRK
Trigger: CTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAG...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
CDS-3UTR CCA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCCAGAACTGCTGCTCTTaGTGTAAAGCCGCAGGAGCT +
Preference number: 4 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTQNCCS*CKAAGA
Trigger: AGCTCCTGCGGCTTTACACCAAGAGCAGCAGTTCTG...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
CDS-3UTR CCA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACAGCTCCTCGCCGTTGTaGAGAATACGGAAGGAATAC +
Preference number: 4 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDSSSPL*RIRKEY
Trigger: GTATTCCTTCCGTATTCTCCACAACGGCGAGGAGCT...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACTCTCCTCTGAAGACTTaGCCTCAAGCTTGGCTAGCT +
Preference number: 4 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDSPLKT*PQAWLA
Trigger: AGCTAGCCAAGCTTGAGGCCAAGTCTTCAGAGGAGA...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CCA 90 bp AGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCAATTCTTGTCTGTAAGAGAGAGGTTTTaGCCGCACTCACAATACAGG +
Preference number: 4 (lower is better)
Translates to: RIVTKVHSHIRVFRQFLSVRERF*PHSQYR
Trigger: CCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTTAC...AGACAAGAATTGCCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp AGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCAATTCTTGTCTCAGAGCATTTCTTCTTaGCATCTTTGGTCTCTGGGA +
Preference number: 4 (lower is better)
Translates to: RIVTKVHSHIRVFRQFLSQSISS*HLWSLG
Trigger: TCCCAGAGACCAAAGATGTCAAGAAGAAATGCTCTG...AGACAAGAATTGCCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCCCTCTCCATCCTCATTaGTGGATCTGTCAAATGGCT +
Preference number: 4 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTPLHPH*WICQMA
Trigger: AGCCATTTGACAGATCCATCAATGAGGATGGAGAGG...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR TCA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCCAGAGCATTTCTTCTTaGCATCTTTGGTCTCTGGGA +
Preference number: 4 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTQSISS*HLWSLG
Trigger: TCCCAGAGACCAAAGATGTCAAGAAGAAATGCTCTG...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR GCA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACTCTGAGAACTTTCTCTaGATCAGTAAGAGAGAGGTT +
Preference number: 4 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDSENFL*ISKREV
Trigger: AACCTCTCTCTTACTGATGCAGAGAAAGTTCTCAGA...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS GCA 90 bp TGCGCCACAGGAAGGCACAGATGCGGGCATCACGCATCAGCTCAATaGTGGCCTCGGGCGAGGGCCACTGGTAGGGGGCAGCCTTGCCTT +
Preference number: 5 (lower is better)
Translates to: CATGRHRCGHHASAQ*WPRARATGRGQPCL
Trigger: AAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS CCA 90 bp GCCACAGGAAGGCACAGATGCGGGCATCACGCATCAGCTCAATGCTaGCCTCGGGCGAGGGCCACTGGTAGGGGGCAGCCTTGCCTTTGC +
Preference number: 5 (lower is better)
Translates to: ATGRHRCGHHASAQC*PRARATGRGQPCLC
Trigger: GCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS-3UTR CAA 90 bp CCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCCTTCTCTGGCTGGGCTCCCCATaGGTCAGTGGACCCTGCTCC +
Preference number: 5 (lower is better)
Translates to: PRCCCWDPFGLRRRQGLLWLGSP*VSGPCS
Trigger: GGAGCAGGGTCCACTGACCAATGGGGAGCCCAGCCA...GAGAAGGCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 90 bp CTGCTGCACCTCTGGGTCTCCTGGAGACTCTGTGTGGGGCTCCTCTaGGGTGGTGCCTGGCTTTGGGTCTACTGTGAGGGTCTCAGCTAC +
Preference number: 5 (lower is better)
Translates to: LLHLWVSWRLCVGLL*GGAWLWVYCEGLSY
Trigger: GTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTGAGGAGGAGACAGGGCCTTCTCTTAACCGAAGCTCCGTTTGCAGCGAGCGCCTTGGGGGTGGCAGCTTaGGGCTGTGGACGAGGGCTC +
Preference number: 5 (lower is better)
Translates to: LRRRQGLLLTEAPFAASALGVAA*GCGRGL
Trigger: GAGCCCTCGTCCACAGCCCAAAGCTGCCACCCCCAA...GGCGCTCGCTGCAAACGGAGCTTCGGTTAAGAGAAGGCCCTGTCTCCTCCTCAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS TCA 90 bp AATCATCTTGGGCGGAGGGAGGTCTGGAAGGCTCTTCTGAGGGGCTaGGGAATGCTGGCTGGGCTCCCCATTGGTCAGTGGACCCTGCTC +
Preference number: 5 (lower is better)
Translates to: NHLGRREVWKALLRG*GMLAGLPIGQWTLL
Trigger: GAGCAGGGTCCACTGACCAATGGGGAGCCCAGCCAGCATTCCTCAGCCCCTCAGAAGAGCCTTCCAGACCTCCCTCCGCCCAAGATGATT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS TCA 90 bp GCTTGGCCAGGACCCCCTTATCTGTGCATCTCAACAGGGTCTCTTTaGGCTCCCGCTTCTCTCTGCGGAGCTGAGCCAGGTGCCCTCGGA +
Preference number: 5 (lower is better)
Translates to: AWPGPPYLCISTGSL*APASLCGAEPGALG
Trigger: TCCGAGGGCACCTGGCTCAGCTCCGCAGAGAGAAGCGGGAGCTCAAAGAGACCCTGTTGAGATGCACAGATAAGGGGGTCCTGGCCAAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 90 bp GTTGTGGAGAATACGGAAGGAATACAGGTGGTCGGGGCTAGGATCTaGAAGCACGTCACAGCCCACCAGGCTGAGGGGCTGCTGGGCCAC +
Preference number: 5 (lower is better)
Translates to: VVENTEGIQVVGARI*KHVTAHQAEGLLGH
Trigger: GTGGCCCAGCAGCCCCTCAGCCTGGTGGGCTGTGACGTGCTTCCAGATCCTAGCCCCGACCACCTGTATTCCTTCCGTATTCTCCACAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 90 bp GGGTCAGTCTTGGAGCCCGACTCTGAGAGCAGGAGGCCTAGCCAGTaGCCCATCTCCTCTGAAGACTTGGCCTCAAGCTTGGCTAGCTCC +
Preference number: 5 (lower is better)
Translates to: GSVLEPDSESRRPSQ*PISSEDLASSLASS
Trigger: GGAGCTAGCCAAGCTTGAGGCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 90 bp AGACTCTTGAACCTCTGGTTGCCTCTGCTGCACCTCTGGGTCTCCTaGAGACTCTGTGTGGGGCTCCTCTGGGGTGGTGCCTGGCTTTGG +
Preference number: 5 (lower is better)
Translates to: RLLNLWLPLLHLWVS*RLCVGLLWGGAWLW
Trigger: CCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAGAGGCAACCAGAGGTTCAAGAGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp ATGCCACCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCGACTTGGCCTCAAGCTaGGCTAGCTCCTCGCCGTTG +
Preference number: 5 (lower is better)
Translates to: MPPRCCCWDPFGLRRRQGDLASS*ASSSPL
Trigger: CAACGGCGAGGAGCTAGCCAAGCTTGAGGCCAAGTC...GCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGGTGGCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS TCA 90 bp CTCTCTGGAATCATCTTGGGCGGAGGGAGGTCTGGAAGGCTCTTCTaGGGGGCTGAGGAATGCTGGCTGGGCTCCCCATTGGTCAGTGGA +
Preference number: 5 (lower is better)
Translates to: LSGIILGGGRSGRLF*GAEECWLGSPLVSG
Trigger: TCCACTGACCAATGGGGAGCCCAGCCAGCATTCCTCAGCCCCTCAGAAGAGCCTTCCAGACCTCCCTCCGCCCAAGATGATTCCAGAGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS TCA 90 bp AGCAGGGGCGGCTTCCTCGGCAGGCTCCACCACGGCTATCAGCTCTaGTACCTCCACATCATCATACAGATCGTCCTGGCAATCCCGGCT +
Preference number: 5 (lower is better)
Translates to: SRGGFLGRLHHGYQL*YLHIIIQIVLAIPA
Trigger: AGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTGGTGGAGCCTGCCGAGGAAGCCGCCCCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS GCA 90 bp TGGGTCTACTGTGAGGGTCTCAGCTACATCGTCCTGATGTGGCACTaGTGGGAGAGAGGCCTGCGCCTGAGCCTCACTGCTACTGTGCAG +
Preference number: 5 (lower is better)
Translates to: WVYCEGLSYIVLMWH*WERGLRLSLTATVQ
Trigger: CTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS GCA 90 bp GCTTCTCTCTGCGGAGCTGAGCCAGGTGCCCTCGGATCTCCTCCTTaGTCCTCTCCAGCCTCTCCTTCTCCTCCGTGTACCGCTTTACTT +
Preference number: 5 (lower is better)
Translates to: ASLCGAEPGALGSPP*SSPASPSPPCTALL
Trigger: AAGTAAAGCGGTACACGGAGGAGAAGGAGAGGCTGGAGAGGAGCAAGGAGGAGATCCGAGGGCACCTGGCTCAGCTCCGCAGAGAGAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 90 bp GACAGGCCGCTCTTCTTCAGCACGGCTGCACTGCTCAGGTTCTCCTaGTCGAGGACCTTAAGGAAGTCGTCCAGCTCTGTCAGCAGCTGC +
Preference number: 5 (lower is better)
Translates to: DRPLFFSTAALLRFS*SRTLRKSSSSVSSC
Trigger: GCAGCTGCTGACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTGTC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
CDS CCA 90 bp GAAGGCTCTTCTGAGGGGCTGAGGAATGCTGGCTGGGCTCCCCATTaGTCAGTGGACCCTGCTCCTCGGGAACTTTGTCTGGAGATGCTG +
Preference number: 5 (lower is better)
Translates to: EGSSEGLRNAGWAPH*SVDPAPRELCLEML
Trigger: CAGCATCTCCAGACAAAGTTCCCGAGGAGCAGGGTCCACTGACCAATGGGGAGCCCAGCCAGCATTCCTCAGCCCCTCAGAAGAGCCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS-3UTR CAA 90 bp TTGAGGAGGAGACAGGGCCTTCTCTTAACCGAAGCTCCGTTTGCAGCGAGCGCCATCACACAGAGCTGCTaGGCCCACTGGCCTAGCCAC +
Preference number: 5 (lower is better)
Translates to: LRRRQGLLLTEAPFAASAITQSC*AHWPSH
Trigger: GTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGAT...GGCGCTCGCTGCAAACGGAGCTTCGGTTAAGAGAAGGCCCTGTCTCCTCCTCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp ATGCCACCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCCTGTGCAGGAAGGACTaGACCGGTGTGAGATCCAGG +
Preference number: 5 (lower is better)
Translates to: MPPRCCCWDPFGLRRRQGLCRKD*TGVRSR
Trigger: CCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAG...GCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGGTGGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp CCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCCTTCTCAGTGTCTGCTCCAGCTaGGCCAGGACCCCCTTATCT +
Preference number: 5 (lower is better)
Translates to: PRCCCWDPFGLRRRQGLLSVCSS*ARTPLS
Trigger: AGATAAGGGGGTCCTGGCCAAGCTGGAGCAGACACT...GAGAAGGCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS TCA 90 bp ACCATGGTGATTCGCGGGGTGGGCTCGATAGGCTCTGAAGACTCTTaGACCTCTGGTTGCCTCTGCTGCACCTCTGGGTCTCCTGGAGAC +
Preference number: 5 (lower is better)
Translates to: TMVIRGVGSIGSEDS*TSGCLCCTSGSPGD
Trigger: GTCTCCAGGAGACCCAGAGGTGCAGCAGAGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS GCA 90 bp TGTGTCCTTTCTTCCGCACTTGCTTCTCCTTGTGCACGACGCTGCTaGCCCGCAGGTTCACGTCCAGCTGAGGACTGTGGTCTTTGGACG +
Preference number: 5 (lower is better)
Translates to: CVLSSALASPCARRC*PAGSRPAEDCGLWT
Trigger: CGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000148049.8
CDS GCA 90 bp GCTTGTGTCCTTTCTTCCGCACTTGCTTCTCCTTGTGCACGACGCTaGTGCCCCGCAGGTTCACGTCCAGCTGAGGACTGTGGTCTTTGG +
Preference number: 5 (lower is better)
Translates to: ACVLSSALASPCARR*CPAGSRPAEDCGLW
Trigger: CCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000148049.8
CDS CCA 90 bp GCCCTCAGGGGACTCGATCTTTGGAACGGTGGGCTGTTTCCTCTCTaGAATCATCTTGGGCGGAGGGAGGTCTGGAAGGCTCTTCTGAGG +
Preference number: 5 (lower is better)
Translates to: ALRGLDLWNGGLFPL*NHLGRREVWKALLR
Trigger: CCTCAGAAGAGCCTTCCAGACCTCCCTCCGCCCAAGATGATTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCGAGTCCCCTGAGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS CCA 90 bp TTGGCTAGCTCCTCGCCGTTGTGGAGAATACGGAAGGAATACAGGTaGTCGGGGCTAGGATCTGGAAGCACGTCACAGCCCACCAGGCTG +
Preference number: 5 (lower is better)
Translates to: LASSSPLWRIRKEYR*SGLGSGSTSQPTRL
Trigger: CAGCCTGGTGGGCTGTGACGTGCTTCCAGATCCTAGCCCCGACCACCTGTATTCCTTCCGTATTCTCCACAACGGCGAGGAGCTAGCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 90 bp TGGCTTTGGGTCTACTGTGAGGGTCTCAGCTACATCGTCCTGATGTaGCACTGCTGGGAGAGAGGCCTGCGCCTGAGCCTCACTGCTACT +
Preference number: 5 (lower is better)
Translates to: WLWVYCEGLSYIVLM*HCWERGLRLSLTAT
Trigger: AGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp GCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCCTCGCACTTGCTTCTCCTaGTGCACGACGCTGCTGCCC +
Preference number: 5 (lower is better)
Translates to: ASRFRLQRCHHDAAAGIPRTCFS*CTTLLP
Trigger: GGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCG...AGGGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTTGCTCAGCTTGGTCCTaGCTCTGCAGGCCCAGCACG +
Preference number: 5 (lower is better)
Translates to: SDPKGVSALAWFPICPSSCSAWS*LCRPST
Trigger: CGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCA...AGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp ATGCCACCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCTGCAGGACAGTGCCTTaGCCTGTGACCATGACGGAA +
Preference number: 5 (lower is better)
Translates to: MPPRCCCWDPFGLRRRQGCRTVP*PVTMTE
Trigger: TTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCA...GCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGGTGGCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS TCA 90 bp CTCCTCATCAGAACTGCTGCTCTTGGTGTAAAGCCGCAGGAGCTCTaGCAGGCCGCTCTTCTTCAGCACGGCTGCACTGCTCAGGTTCTC +
Preference number: 5 (lower is better)
Translates to: LLIRTAALGVKPQEL*QAALLQHGCTAQVL
Trigger: GAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCAGTTCTGATGAGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
CDS GCA 90 bp GCGTTCATCGGTGTGATCTTGAGCTTGTGTCCTTTCTTCCGCACTTaGTTCTCCTTGTGCACGACGCTGCTGCCCCGCAGGTTCACGTCC +
Preference number: 5 (lower is better)
Translates to: AFIGVILSLCPFFRT*FSLCTTLLPRRFTS
Trigger: GGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000148049.8
CDS CCA 90 bp GTGCAGGAAGGACTTGACCGGTGTGAGATCCAGGTAGACTCTGTCTaGCTCACTACCACTGTTAGCATCGACAGCAGGGGCGGCTTCCTC +
Preference number: 5 (lower is better)
Translates to: VQEGLDRCEIQVDSV*LTTTVSIDSRGGFL
Trigger: GAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AAGCTCCGTTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCTGGCTGGGCTCCCCATaGGTCAGTGGACCCTGCTCC +
Preference number: 5 (lower is better)
Translates to: KLRLQRAPHPLLCLVNRLWLGSP*VSGPCS
Trigger: GGAGCAGGGTCCACTGACCAATGGGGAGCCCAGCCA...GAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAACGGAGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGTGGCCTAGCCACTTCTaGCGCCACAGGAAGGCACAG +
Preference number: 5 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLWPSHF*RHRKAQ
Trigger: CTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCA...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTAGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTTGCTCAGCTTGGTCCTaGCTCTGCAGGCCCAGCACG +
Preference number: 5 (lower is better)
Translates to: LVTPRGSVPWLGSQYVPLCSAWS*LCRPST
Trigger: CGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCA...AAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTGAGGAGGAGACAGGGCCTTCTCTTAACCGAAGCTCCGTTTGCAGCGAGCGCCCCCAGGTTCATAAGGTaGCTCAGCTTGAGGCCAGCA +
Preference number: 5 (lower is better)
Translates to: LRRRQGLLLTEAPFAASAPRFIR*LSLRPA
Trigger: TGCTGGCCTCAAGCTGAGCAACCTTATGAACCTGGG...GGCGCTCGCTGCAAACGGAGCTTCGGTTAAGAGAAGGCCCTGTCTCCTCCTCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGGACTTGGCCTCAAGCTaGGCTAGCTCCTCGCCGTTG +
Preference number: 5 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLDLASS*ASSSPL
Trigger: CAACGGCGAGGAGCTAGCCAAGCTTGAGGCCAAGTC...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp CAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCTCAGTTGGGGGTGGCAGCTTaGGGCTGTGGACGAGGGCTC +
Preference number: 5 (lower is better)
Translates to: QRAPHPLLCLVNRLTFPQLGVAA*GCGRGL
Trigger: GAGCCCTCGTCCACAGCCCAAAGCTGCCACCCCCAA...CTGAGGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AAGCTCCGTTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCTTGGGGGTGGCAGCTTaGGGCTGTGGACGAGGGCTC +
Preference number: 5 (lower is better)
Translates to: KLRLQRAPHPLLCLVNRLLGVAA*GCGRGL
Trigger: GAGCCCTCGTCCACAGCCCAAAGCTGCCACCCCCAA...GAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAACGGAGCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 90 bp CAGCCTCTTCATAGTAGCCCTCAGGGGACTCGATCTTTGGAACGGTaGGCTGTTTCCTCTCTGGAATCATCTTGGGCGGAGGGAGGTCTG +
Preference number: 5 (lower is better)
Translates to: QPLHSSPQGTRSLER*AVSSLESSWAEGGL
Trigger: CAGACCTCCCTCCGCCCAAGATGATTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCGAGTCCCCTGAGGGCTACTATGAAGAGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS CCA 90 bp AAGTTTGATCTCTGCACTGGTCACTCTCAGCTTCTCCTTCACAGGTaGGCTGGCAGCGATGGGGGCAGAAGCCATGGTGTCTGGGCAGTT +
Preference number: 5 (lower is better)
Translates to: KFDLCTGHSQLLLHR*AGSDGGRSHGVWAV
Trigger: AACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAGAGATCAAACTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp CCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCCTTCTCGGTGTGATCTTGAGCTaGTGTCCTTTCTTCCGCACT +
Preference number: 5 (lower is better)
Translates to: PRCCCWDPFGLRRRQGLLGVILS*CPFFRT
Trigger: AGTGCGGAAGAAAGGACACAAGCTCAAGATCACACC...GAGAAGGCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AAGCTCCGTTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCTGCTCAGCTTGGTCCTaGCTCTGCAGGCCCAGCACG +
Preference number: 5 (lower is better)
Translates to: KLRLQRAPHPLLCLVNRLCSAWS*LCRPST
Trigger: CGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCA...GAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAACGGAGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCCTGTGCAGGAAGGACTaGACCGGTGTGAGATCCAGG +
Preference number: 5 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSLCRKD*TGVRSR
Trigger: CCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAG...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTCTGTGCAGGAAGGACTaGACCGGTGTGAGATCCAGG +
Preference number: 5 (lower is better)
Translates to: SDPKGVSALAWFPICPSSLCRKD*TGVRSR
Trigger: CCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAG...AGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp ATGCCACCACGATGCTGCTGCTGGGATCCCTTTGGCTTGAGGAGGAGACAGGGCGAAAGAGGCCTGTTCTaGAGCACAGATGCAGAGTTG +
Preference number: 5 (lower is better)
Translates to: MPPRCCCWDPFGLRRRQGERGLF*STDAEL
Trigger: CAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTC...GCCCTGTCTCCTCCTCAAGCCAAAGGGATCCCAGCAGCAGCATCGTGGTGGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS TCA 90 bp TGGGATCTCAGGGTGGCCGTTGATGGTGATCCCGTACTCCGCTGCTaGCAGGTACTTCTCAGCTATGTCTGGTTTCTGACAGTTGAGGCG +
Preference number: 5 (lower is better)
Translates to: WDLRVAVDGDPVLRC*QVLLSYVWFLTVEA
Trigger: CGCCTCAACTGTCAGAAACCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000148049.8
CDS CCA 90 bp ACTCGATCTTTGGAACGGTGGGCTGTTTCCTCTCTGGAATCATCTTaGGCGGAGGGAGGTCTGGAAGGCTCTTCTGAGGGGCTGAGGAAT +
Preference number: 5 (lower is better)
Translates to: TRSLERWAVSSLESS*AEGGLEGSSEGLRN
Trigger: ATTCCTCAGCCCCTCAGAAGAGCCTTCCAGACCTCCCTCCGCCCAAGATGATTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS CCA 90 bp TCCTCTGAAGACTTGGCCTCAAGCTTGGCTAGCTCCTCGCCGTTGTaGAGAATACGGAAGGAATACAGGTGGTCGGGGCTAGGATCTGGA +
Preference number: 5 (lower is better)
Translates to: SSEDLASSLASSSPL*RIRKEYRWSGLGSG
Trigger: TCCAGATCCTAGCCCCGACCACCTGTATTCCTTCCGTATTCTCCACAACGGCGAGGAGCTAGCCAAGCTTGAGGCCAAGTCTTCAGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTGCTAGCTCCTCGCCGTaGTGGAGAATACGGAAGGAA +
Preference number: 5 (lower is better)
Translates to: SDPKGVSALAWFPICPSSASSSP*WRIRKE
Trigger: TTCCTTCCGTATTCTCCACAACGGCGAGGAGCTAGC...AGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTCTCAACAGGGTCTCTTaGAGCTCCCGCTTCTCTCTG +
Preference number: 5 (lower is better)
Translates to: SDPKGVSALAWFPICPSSLNRVS*SSRFSL
Trigger: CAGAGAGAAGCGGGAGCTCAAAGAGACCCTGTTGAG...AGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTAGCACAGATGCAGAGTaGACTGGCGTGGAGTCTGGT +
Preference number: 5 (lower is better)
Translates to: SDPKGVSALAWFPICPSSSTDAE*TGVESG
Trigger: ACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCT...AGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTGAGGAGGAGACAGGGCCTTCTCTTAACCGAAGCTCCGTTTGCAGCGAGCGCCGAAAGAGGCCTGTTCTaGAGCACAGATGCAGAGTTG +
Preference number: 5 (lower is better)
Translates to: LRRRQGLLLTEAPFAASAERGLF*STDAEL
Trigger: CAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTC...GGCGCTCGCTGCAAACGGAGCTTCGGTTAAGAGAAGGCCCTGTCTCCTCCTCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 90 bp AAATGGCTCAGCCTCTTCATAGTAGCCCTCAGGGGACTCGATCTTTaGAACGGTGGGCTGTTTCCTCTCTGGAATCATCTTGGGCGGAGG +
Preference number: 5 (lower is better)
Translates to: KWLSLFIVALRGLDL*NGGLFPLWNHLGRR
Trigger: CCTCCGCCCAAGATGATTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCGAGTCCCCTGAGGGCTACTATGAAGAGGCTGAGCCATTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS CCA 90 bp ACGGCTATCAGCTCTGATACCTCCACATCATCATACAGATCGTCCTaGCAATCCCGGCTGGGCAGGCCATCGATGTATGTGTTGGGCTCT +
Preference number: 5 (lower is better)
Translates to: TAISSDTSTSSYRSS*QSRLGRPSMYVLGS
Trigger: AGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCTCCTTTCTTCCGCACTaGCTTCTCCTTGTGCACGAC +
Preference number: 5 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSSFLPH*LLLVHD
Trigger: GTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGA...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTAGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTCAACAGGGTCTCTTaGAGCTCCCGCTTCTCTCTG +
Preference number: 5 (lower is better)
Translates to: LVTPRGSVPWLGSQYVPLLNRVS*SSRFSL
Trigger: CAGAGAGAAGCGGGAGCTCAAAGAGACCCTGTTGAG...AAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS TCA 90 bp CACTCACAATACAGGAAACCCTTTCAGCATCCACATAGTCGTAGGTaGGCTCTTCCGGGTCAGTCTTGGAGCCCGACTCTGAGAGCAGGA +
Preference number: 5 (lower is better)
Translates to: HSQYRKPFQHPHSRR*ALPGQSWSPTLRAG
Trigger: TCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTATGTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 90 bp GCAGAGCATTTCTTCTTGACATCTTTGGTCTCTGGGATCTCAGGGTaGCCGTTGATGGTGATCCCGTACTCCGCTGCTGACAGGTACTTC +
Preference number: 5 (lower is better)
Translates to: AEHFFLTSLVSGISG*PLMVIPYSAADRYF
Trigger: GAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATGTCAAGAAGAAATGCTCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 90 bp GATCGTCCTGGCAATCCCGGCTGGGCAGGCCATCGATGTATGTGTTaGGCTCTGAGAACTTTCTCTGCATCAGTAAGAGAGAGGTTTTGG +
Preference number: 5 (lower is better)
Translates to: DRPGNPGWAGHRCMC*ALRTFSASVRERFW
Trigger: CCAAAACCTCTCTCTTACTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp GCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCCTGGTGTGATCTTGAGCTaGTGTCCTTTCTTCCGCACT +
Preference number: 5 (lower is better)
Translates to: ASRFRLQRCHHDAAAGIPGVILS*CPFFRT
Trigger: AGTGCGGAAGAAAGGACACAAGCTCAAGATCACACC...AGGGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTATAAGGTTGCTCAGCTaGAGGCCAGCAGAGCATTTC +
Preference number: 5 (lower is better)
Translates to: SDPKGVSALAWFPICPSSIRLLS*RPAEHF
Trigger: GAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTAT...AGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCTTCTTCTCCCATTCCTaGGCTTTCTGCAGGACAGTG +
Preference number: 5 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSFFSHS*AFCRTV
Trigger: CACTGTCCTGCAGAAAGCCAAGGAATGGGAGAAGAA...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 90 bp CTGATACCTCCACATCATCATACAGATCGTCCTGGCAATCCCGGCTaGGCAGGCCATCGATGTATGTGTTGGGCTCTGAGAACTTTCTCT +
Preference number: 5 (lower is better)
Translates to: LIPPHHHTDRPGNPG*AGHRCMCWALRTFS
Trigger: AGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCAATTCTTGTCTTGGCTGGGCTCCCCATaGGTCAGTGGACCCTGCTCC +
Preference number: 5 (lower is better)
Translates to: RIVTKVHSHIRVFRQFLSWLGSP*VSGPCS
Trigger: GGAGCAGGGTCCACTGACCAATGGGGAGCCCAGCCA...AGACAAGAATTGCCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTGAAGACTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTATCACACAGAGCTGCTaGGCCCACTGGCCTAGCCAC +
Preference number: 5 (lower is better)
Translates to: LKTCPEQDCHQGPQSHKSITQSC*AHWPSH
Trigger: GTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGAT...ACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAGTCTTCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTAGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTGGTGTGATCTTGAGCTaGTGTCCTTTCTTCCGCACT +
Preference number: 5 (lower is better)
Translates to: LVTPRGSVPWLGSQYVPLGVILS*CPFFRT
Trigger: AGTGCGGAAGAAAGGACACAAGCTCAAGATCACACC...AAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCTTCTTCTTGACATCTTaGGTCTCTGGGATCTCAGGG +
Preference number: 5 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSFFLTS*VSGISG
Trigger: CCCTGAGATCCCAGAGACCAAAGATGTCAAGAAGAA...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp CAGCCAGTAGATTTCGACTCCAAAGATGCCACCACGATGCTGCTGCTGGGATCCGCAGAGCATTTCTTCTaGACATCTTTGGTCTCTGGG +
Preference number: 5 (lower is better)
Translates to: QPVDFDSKDATTMLLLGSAEHFF*TSLVSG
Trigger: CCCAGAGACCAAAGATGTCAAGAAGAAATGCTCTGC...GGATCCCAGCAGCAGCATCGTGGTGGCATCTTTGGAGTCGAAATCTACTGGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTAGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTATAAGGTTGCTCAGCTaGAGGCCAGCAGAGCATTTC +
Preference number: 5 (lower is better)
Translates to: LVTPRGSVPWLGSQYVPLIRLLS*RPAEHF
Trigger: GAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTAT...AAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGAGTAAGAGAGAGGTTTaGGCCGCACTCACAATACAG +
Preference number: 5 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLSKREV*AALTIQ
Trigger: CTGTATTGTGAGTGCGGCCAAAACCTCTCTCTTACT...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp ACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGCCATCGATGTATGTGTaGGGCTCTGAGAACTTTCTC +
Preference number: 5 (lower is better)
Translates to: TPRGSVPWLGSQYVPLLLPSMYV*GSENFL
Trigger: GAGAAAGTTCTCAGAGCCCAACACATACATCGATGG...CAGTAGAAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AATGTATCAACTTGTGCTAGTGCTGTCCCAGAGAGACAGCACATAAAGACAGCAGACTTGGCCTCAAGCTaGGCTAGCTCCTCGCCGTTG +
Preference number: 5 (lower is better)
Translates to: NVSTCASAVPERQHIKTADLASS*ASSSPL
Trigger: CAACGGCGAGGAGCTAGCCAAGCTTGAGGCCAAGTC...TGCTGTCTTTATGTGCTGTCTCTCTGGGACAGCACTAGCACAAGTTGATACATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTAGTGACCCCAAGGGGGTCAGTGCCTTGGCTTGGTTCCCAATATGTCCCTCTTCCATCGATGTATGTGTaGGGCTCTGAGAACTTTCTC +
Preference number: 5 (lower is better)
Translates to: LVTPRGSVPWLGSQYVPLPSMYV*GSENFL
Trigger: GAGAAAGTTCTCAGAGCCCAACACATACATCGATGG...AAGAGGGACATATTGGGAACCAAGCCAAGGCACTGACCCCCTTGGGGTCACTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACCGCACTTGCTTCTCCTaGTGCACGACGCTGCTGCCC +
Preference number: 5 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDRTCFS*CTTLLP
Trigger: GGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCG...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTGAAGACTTGTCCAGAGCAGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCCCAGGTTCATAAGGTaGCTCAGCTTGAGGCCAGCA +
Preference number: 5 (lower is better)
Translates to: LKTCPEQDCHQGPQSHKSPRFIR*LSLRPA
Trigger: TGCTGGCCTCAAGCTGAGCAACCTTATGAACCTGGG...ACTCTTATGTGACTGTGGACCTTGGTGACAATCCTGCTCTGGACAAGTCTTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AATGTATCAACTTGTGCTAGTGCTGTCCCAGAGAGACAGCACATAAAGACAGCAAGTGTCTGCTCCAGCTaGGCCAGGACCCCCTTATCT +
Preference number: 5 (lower is better)
Translates to: NVSTCASAVPERQHIKTASVCSS*ARTPLS
Trigger: AGATAAGGGGGTCCTGGCCAAGCTGGAGCAGACACT...TGCTGTCTTTATGTGCTGTCTCTCTGGGACAGCACTAGCACAAGTTGATACATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCGAAAGAGGCCTGTTCTaGAGCACAGATGCAGAGTTG +
Preference number: 5 (lower is better)
Translates to: FAASASSLALSCKQTHLSERGLF*STDAEL
Trigger: CAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTC...GGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACTGGCCTAGCCACTTCTaGCGCCACAGGAAGGCACAG +
Preference number: 5 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDWPSHF*RHRKAQ
Trigger: CTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCA...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCCGCACTTGCTTCTCCTaGTGCACGACGCTGCTGCCC +
Preference number: 5 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTRTCFS*CTTLLP
Trigger: GGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCG...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCTTCTTCTTGACATCTTaGGTCTCTGGGATCTCAGGG +
Preference number: 5 (lower is better)
Translates to: FAASASSLALSCKQTHLSFFLTS*VSGISG
Trigger: CCCTGAGATCCCAGAGACCAAAGATGTCAAGAAGAA...GGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTTGCAGCGAGCGCCTCATCCCTTGCTTTGTCTTGTAAACAGACTCACCTTTCCAGTAAGAGAGAGGTTTaGGCCGCACTCACAATACAG +
Preference number: 5 (lower is better)
Translates to: FAASASSLALSCKQTHLSSKREV*AALTIQ
Trigger: CTGTATTGTGAGTGCGGCCAAAACCTCTCTCTTACT...GGAAAGGTGAGTCTGTTTACAAGACAAAGCAAGGGATGAGGCGCTCGCTGCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AATGTATCAACTTGTGCTAGTGCTGTCCCAGAGAGACAGCACATAAAGACAGCATCCTTTCTTCCGCACTaGCTTCTCCTTGTGCACGAC +
Preference number: 5 (lower is better)
Translates to: NVSTCASAVPERQHIKTASFLPH*LLLVHD
Trigger: GTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGA...TGCTGTCTTTATGTGCTGTCTCTCTGGGACAGCACTAGCACAAGTTGATACATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCAATTCTTGTCTCCCAGGTTCATAAGGTaGCTCAGCTTGAGGCCAGCA +
Preference number: 5 (lower is better)
Translates to: RIVTKVHSHIRVFRQFLSPRFIR*LSLRPA
Trigger: TGCTGGCCTCAAGCTGAGCAACCTTATGAACCTGGG...AGACAAGAATTGCCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCAATTCTTGTCTGCTAGCTCCTCGCCGTaGTGGAGAATACGGAAGGAA +
Preference number: 5 (lower is better)
Translates to: RIVTKVHSHIRVFRQFLSASSSP*WRIRKE
Trigger: TTCCTTCCGTATTCTCCACAACGGCGAGGAGCTAGC...AGACAAGAATTGCCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCAATTCTTGTCTAGCACAGATGCAGAGTaGACTGGCGTGGAGTCTGGT +
Preference number: 5 (lower is better)
Translates to: RIVTKVHSHIRVFRQFLSSTDAE*TGVESG
Trigger: ACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCT...AGACAAGAATTGCCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCAGCACAGATGCAGAGTaGACTGGCGTGGAGTCTGGT +
Preference number: 5 (lower is better)
Translates to: LAWFPICPSSTDYRVLMFSTDAE*TGVESG
Trigger: ACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCT...GAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAACCAAGCCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCAATTCTTGTCTTGCAGGACAGTGCCTTaGCCTGTGACCATGACGGAA +
Preference number: 5 (lower is better)
Translates to: RIVTKVHSHIRVFRQFLSCRTVP*PVTMTE
Trigger: TTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCA...AGACAAGAATTGCCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCAATTCTTGTCTTCCTTTCTTCCGCACTaGCTTCTCCTTGTGCACGAC +
Preference number: 5 (lower is better)
Translates to: RIVTKVHSHIRVFRQFLSSFLPH*LLLVHD
Trigger: GTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGA...AGACAAGAATTGCCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCAGTGTCTGCTCCAGCTaGGCCAGGACCCCCTTATCT +
Preference number: 5 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTSVCSS*ARTPLS
Trigger: AGATAAGGGGGTCCTGGCCAAGCTGGAGCAGACACT...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCATCAGAGACTGCAGGACAGTGCCTTaGCCTGTGACCATGACGGAA +
Preference number: 5 (lower is better)
Translates to: CPSSTDYRVLMFFKTIRDCRTVP*PVTMTE
Trigger: TTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCA...GTCTCTGATGGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AATGTATCAACTTGTGCTAGTGCTGTCCCAGAGAGACAGCACATAAAGACAGCATTCTTCTCCCATTCCTaGGCTTTCTGCAGGACAGTG +
Preference number: 5 (lower is better)
Translates to: NVSTCASAVPERQHIKTAFFSHS*AFCRTV
Trigger: CACTGTCCTGCAGAAAGCCAAGGAATGGGAGAAGAA...TGCTGTCTTTATGTGCTGTCTCTCTGGGACAGCACTAGCACAAGTTGATACATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS TCA 90 bp GCTCCTCGGGAACTTTGTCTGGAGATGCTGAGTTTTGTTCCCCGTTaGCTGACACTTTGTTCATGTAAATATACTCCTCATCAGAACTGC +
Preference number: 5 (lower is better)
Translates to: APRELCLEMLSFVPR*LTLCSCKYTPHQNC
Trigger: GCAGTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAGTTCCCGAGGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
CDS-3UTR CAA 90 bp TTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCATAAGGTTGCTCAGCTaGAGGCCAGCAGAGCATTTC +
Preference number: 5 (lower is better)
Translates to: LAWFPICPSSTDYRVLMFIRLLS*RPAEHF
Trigger: GAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTAT...GAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAACCAAGCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AATGTATCAACTTGTGCTAGTGCTGTCCCAGAGAGACAGCACATAAAGACAGCACCATCGATGTATGTGTaGGGCTCTGAGAACTTTCTC +
Preference number: 5 (lower is better)
Translates to: NVSTCASAVPERQHIKTAPSMYV*GSENFL
Trigger: GAGAAAGTTCTCAGAGCCCAACACATACATCGATGG...TGCTGTCTTTATGTGCTGTCTCTCTGGGACAGCACTAGCACAAGTTGATACATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTCTGCCTTCTTCAGGTaGTCCTTCACCTCCATGATG +
Preference number: 5 (lower is better)
Translates to: LAWFPICPSSTDYRVLMFSAFFR*SFTSMM
Trigger: CATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGA...GAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAACCAAGCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTGGCTTGGTTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTCTTCTTGACATCTTaGGTCTCTGGGATCTCAGGG +
Preference number: 5 (lower is better)
Translates to: LAWFPICPSSTDYRVLMFFFLTS*VSGISG
Trigger: CCCTGAGATCCCAGAGACCAAAGATGTCAAGAAGAA...GAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAACCAAGCCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp AGGATTGTCACCAAGGTCCACAGTCACATAAGAGTCTTTAGGCAATTCTTGTCTGCAGAGCATTTCTTCTaGACATCTTTGGTCTCTGGG +
Preference number: 5 (lower is better)
Translates to: RIVTKVHSHIRVFRQFLSAEHFF*TSLVSG
Trigger: CCCAGAGACCAAAGATGTCAAGAAGAAATGCTCTGC...AGACAAGAATTGCCTAAAGACTCTTATGTGACTGTGGACCTTGGTGACAATCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCTCTGCCTTCTTCAGGTaGTCCTTCACCTCCATGATG +
Preference number: 5 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTSAFFR*SFTSMM
Trigger: CATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGA...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS-3UTR CAA 90 bp TTCCCAATATGTCCCTCTTCTACTGATTACAGGGTTCTAATGTTCTTTAAGACCTTCTTCTCCCATTCCTaGGCTTTCTGCAGGACAGTG +
Preference number: 5 (lower is better)
Translates to: FPICPSSTDYRVLMFFKTFFSHS*AFCRTV
Trigger: CACTGTCCTGCAGAAAGCCAAGGAATGGGAGAAGAA...GGTCTTAAAGAACATTAGAACCCTGTAATCAGTAGAAGAGGGACATATTGGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS GCA 72 bp GGAAGGCACAGATGCGGGCATCACGCATCAGCTCAATaGTGGCCTCGGGCGAGGGCCACTGGTAGGGGGCAG +
Preference number: 6 (lower is better)
Translates to: GRHRCGHHASAQ*WPRARATGRGQ
Trigger: CTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS CCA 72 bp AGGCACAGATGCGGGCATCACGCATCAGCTCAATGCTaGCCTCGGGCGAGGGCCACTGGTAGGGGGCAGCCT +
Preference number: 6 (lower is better)
Translates to: RHRCGHHASAQC*PRARATGRGQP
Trigger: AGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS GCA 72 bp TGGCCTCGGGCGAGGGCCACTGGTAGGGGGCAGCCTTaGCTTTGCTGTTCTCGTCCTCATCGTAGGACTCGT +
Preference number: 6 (lower is better)
Translates to: WPRARATGRGQP*LCCSRPHRRTR
Trigger: ACGAGTCCTACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS CCA 72 bp GAGGGCTCATGTTGTCCAGGTGCGTGGTATCCACAGTaGTGCCCAGGGTCACGGGCCCAGCCTCTGCCTTCT +
Preference number: 6 (lower is better)
Translates to: EGSCCPGAWYPQ*CPGSRAQPLPS
Trigger: AGAAGGCAGAGGCTGGGCCCGTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS GCA 72 bp GGCCTAGCCACTTCTTGCGCCACAGGAAGGCACAGATaGGGGCATCACGCATCAGCTCAATGCTGGCCTCGG +
Preference number: 6 (lower is better)
Translates to: GLATSCATGRHR*GHHASAQCWPR
Trigger: CCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS CCA 72 bp TGGGCTGGCAGCGATGGGGGCAGAAGCCATGGTGTCTaGGCAGTTGGCTGGGAAGGAGATTCTCTGCTGCTC +
Preference number: 6 (lower is better)
Translates to: WAGSDGGRSHGV*AVGWEGDSLLL
Trigger: GAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CAA 90 bp ACAGTGGTGCCCAGGGTCACGGGCCCAGCCTCTGCCTTCTTCAGGTaGTCCTTCACCTCCATGATGCTGAGCTCAAGGTCCACACGCCTG +
Preference number: 6 (lower is better)
Translates to: TVVPRVTGPASAFFR*SFTSMMLSSRSTRL
Trigger: CAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTGACCCTGGGCACCACTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS TCA 72 bp ATCATCTTGGGCGGAGGGAGGTCTGGAAGGCTCTTCTaGGGGGCTGAGGAATGCTGGCTGGGCTCCCCATTG +
Preference number: 6 (lower is better)
Translates to: IILGGGRSGRLF*GAEECWLGSPL
Trigger: CAATGGGGAGCCCAGCCAGCATTCCTCAGCCCCTCAGAAGAGCCTTCCAGACCTCCCTCCGCCCAAGATGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS GCA 72 bp TCTTCCGCACTTGCTTCTCCTTGTGCACGACGCTGCTaGCCCGCAGGTTCACGTCCAGCTGAGGACTGTGGT +
Preference number: 6 (lower is better)
Translates to: SSALASPCARRC*PAGSRPAEDCG
Trigger: ACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000148049.8
CDS GCA 72 bp TGTGAGGGTCTCAGCTACATCGTCCTGATGTGGCACTaGTGGGAGAGAGGCCTGCGCCTGAGCCTCACTGCT +
Preference number: 6 (lower is better)
Translates to: CEGLSYIVLMWH*WERGLRLSLTA
Trigger: AGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 72 bp GAGGGTCTCAGCTACATCGTCCTGATGTGGCACTGCTaGGAGAGAGGCCTGCGCCTGAGCCTCACTGCTACT +
Preference number: 6 (lower is better)
Translates to: EGLSYIVLMWHC*ERGLRLSLTAT
Trigger: AGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 72 bp CTCTGTGTGGGGCTCCTCTGGGGTGGTGCCTGGCTTTaGGTCTACTGTGAGGGTCTCAGCTACATCGTCCTG +
Preference number: 6 (lower is better)
Translates to: LCVGLLWGGAWL*VYCEGLSYIVL
Trigger: CAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 72 bp CAGCGATGGGGGCAGAAGCCATGGTGTCTGGGCAGTTaGCTGGGAAGGAGATTCTCTGCTGCTCGGCCTGTA +
Preference number: 6 (lower is better)
Translates to: QRWGQKPWCLGS*LGRRFSAARPV
Trigger: TACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CAA 72 bp CACAAGAGCCTGGTGTCCCTGATCACACAGAGCTGCTaGGCCCACTGGCCTAGCCACTTCTTGCGCCACAGG +
Preference number: 6 (lower is better)
Translates to: HKSLVSLITQSC*AHWPSHFLRHR
Trigger: CCTGTGGCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGACACCAGGCTCTTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000148049.8
CDS CAA 90 bp CCACTCACCTCCTGGATGACCCGAAGCCACTGCTCAGCTTGGTCCTaGCTCTGCAGGCCCAGCACGATAACGTCAGCGTTCATCGGTGTG +
Preference number: 6 (lower is better)
Translates to: PLTSWMTRSHCSAWS*LCRPSTITSAFIGV
Trigger: CACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGGGTCATCCAGGAGGTGAGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000148049.8
CDS TCA 72 bp GCTCCTCTGGGGTGGTGCCTGGCTTTGGGTCTACTGTaGGGGTCTCAGCTACATCGTCCTGATGTGGCACTG +
Preference number: 6 (lower is better)
Translates to: APLGWCLALGLL*GSQLHRPDVAL
Trigger: CAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS GCA 72 bp CTTTCTTCCGCACTTGCTTCTCCTTGTGCACGACGCTaGTGCCCCGCAGGTTCACGTCCAGCTGAGGACTGT +
Preference number: 6 (lower is better)
Translates to: LSSALASPCARR*CPAGSRPAEDC
Trigger: ACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000148049.8
CDS CCA 72 bp CTCACCTCCTGGATGACCCGAAGCCACTGCTCAGCTTaGTCCTTGCTCTGCAGGCCCAGCACGATAACGTCA +
Preference number: 6 (lower is better)
Translates to: LTSWMTRSHCSA*SLLCRPSTITS
Trigger: TGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGGGTCATCCAGGAGGTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000148049.8
CDS CCA 72 bp AATACGGAAGGAATACAGGTGGTCGGGGCTAGGATCTaGAAGCACGTCACAGCCCACCAGGCTGAGGGGCTG +
Preference number: 6 (lower is better)
Translates to: NTEGIQVVGARI*KHVTAHQAEGL
Trigger: CAGCCCCTCAGCCTGGTGGGCTGTGACGTGCTTCCAGATCCTAGCCCCGACCACCTGTATTCCTTCCGTATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 72 bp TGGAGACTCTGTGTGGGGCTCCTCTGGGGTGGTGCCTaGCTTTGGGTCTACTGTGAGGGTCTCAGCTACATC +
Preference number: 6 (lower is better)
Translates to: WRLCVGLLWGGA*LWVYCEGLSYI
Trigger: GATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CAA 72 bp TCCTGGATGACCCGAAGCCACTGCTCAGCTTGGTCCTaGCTCTGCAGGCCCAGCACGATAACGTCAGCGTTC +
Preference number: 6 (lower is better)
Translates to: SWMTRSHCSAWS*LCRPSTITSAF
Trigger: GAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGGGTCATCCAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000148049.8
CDS TCA 72 bp AGAACTGCTGCTCTTGGTGTAAAGCCGCAGGAGCTCTaGCAGGCCGCTCTTCTTCAGCACGGCTGCACTGCT +
Preference number: 6 (lower is better)
Translates to: RTAALGVKPQEL*QAALLQHGCTA
Trigger: AGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCAGTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
CDS TCA 72 bp ATTCGCGGGGTGGGCTCGATAGGCTCTGAAGACTCTTaGACCTCTGGTTGCCTCTGCTGCACCTCTGGGTCT +
Preference number: 6 (lower is better)
Translates to: IRGVGSIGSEDS*TSGCLCCTSGS
Trigger: AGACCCAGAGGTGCAGCAGAGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS TCA 72 bp GGACCCCCTTATCTGTGCATCTCAACAGGGTCTCTTTaGGCTCCCGCTTCTCTCTGCGGAGCTGAGCCAGGT +
Preference number: 6 (lower is better)
Translates to: GPPYLCISTGSL*APASLCGAEPG
Trigger: ACCTGGCTCAGCTCCGCAGAGAGAAGCGGGAGCTCAAAGAGACCCTGTTGAGATGCACAGATAAGGGGGTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS GCA 72 bp GTGTCTGGGCAGTTGGCTGGGAAGGAGATTCTCTGCTaGTCGGCCTGTAGCTTAACCATGGTGATTCGCGGG +
Preference number: 6 (lower is better)
Translates to: VSGQLAGKEILC*SACSLTMVIRG
Trigger: CCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 72 bp TTGGAACGGTGGGCTGTTTCCTCTCTGGAATCATCTTaGGCGGAGGGAGGTCTGGAAGGCTCTTCTGAGGGG +
Preference number: 6 (lower is better)
Translates to: LERWAVSSLESS*AEGGLEGSSEG
Trigger: CCCCTCAGAAGAGCCTTCCAGACCTCCCTCCGCCCAAGATGATTCCAGAGAGGAAACAGCCCACCGTTCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS CCA 72 bp TCCTCGCCGTTGTGGAGAATACGGAAGGAATACAGGTaGTCGGGGCTAGGATCTGGAAGCACGTCACAGCCC +
Preference number: 6 (lower is better)
Translates to: SSPLWRIRKEYR*SGLGSGSTSQP
Trigger: GGGCTGTGACGTGCTTCCAGATCCTAGCCCCGACCACCTGTATTCCTTCCGTATTCTCCACAACGGCGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS GCA 72 bp AGCTCTGTCAGCAGCTGCTCCAGGGAAGCAGAGACCTaGAGGATTCTTCTCTGCACCACCAGACAGCAACAG +
Preference number: 6 (lower is better)
Translates to: SSVSSCSREAET*RILLCTTRQQQ
Trigger: CTGTTGCTGTCTGGTGGTGCAGAGAAGAATCCTGCAGGTCTCTGCTTCCCTGGAGCAGCTGCTGACAGAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111584.9
CDS GCA 72 bp GAATGCTGGCTGGGCTCCCCATTGGTCAGTGGACCCTaGTCCTCGGGAACTTTGTCTGGAGATGCTGAGTTT +
Preference number: 6 (lower is better)
Translates to: ECWLGSPLVSGP*SSGTLSGDAEF
Trigger: AAACTCAGCATCTCCAGACAAAGTTCCCGAGGAGCAGGGTCCACTGACCAATGGGGAGCCCAGCCAGCATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS CCA 72 bp CTCTTCTTCAGCACGGCTGCACTGCTCAGGTTCTCCTaGTCGAGGACCTTAAGGAAGTCGTCCAGCTCTGTC +
Preference number: 6 (lower is better)
Translates to: LFFSTAALLRFS*SRTLRKSSSSV
Trigger: GACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
CDS CCA 72 bp GACTTGGCCTCAAGCTTGGCTAGCTCCTCGCCGTTGTaGAGAATACGGAAGGAATACAGGTGGTCGGGGCTA +
Preference number: 6 (lower is better)
Translates to: DLASSLASSSPL*RIRKEYRWSGL
Trigger: TAGCCCCGACCACCTGTATTCCTTCCGTATTCTCCACAACGGCGAGGAGCTAGCCAAGCTTGAGGCCAAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 72 bp GGACTTGACCGGTGTGAGATCCAGGTAGACTCTGTCTaGCTCACTACCACTGTTAGCATCGACAGCAGGGGC +
Preference number: 6 (lower is better)
Translates to: GLDRCEIQVDSV*LTTTVSIDSRG
Trigger: GCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CAA 72 bp GAAGACTTGGCCTCAAGCTTGGCTAGCTCCTCGCCGTaGTGGAGAATACGGAAGGAATACAGGTGGTCGGGG +
Preference number: 6 (lower is better)
Translates to: EDLASSLASSSP*WRIRKEYRWSG
Trigger: CCCCGACCACCTGTATTCCTTCCGTATTCTCCACAACGGCGAGGAGCTAGCCAAGCTTGAGGCCAAGTCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 72 bp CATAGTAGCCCTCAGGGGACTCGATCTTTGGAACGGTaGGCTGTTTCCTCTCTGGAATCATCTTGGGCGGAG +
Preference number: 6 (lower is better)
Translates to: HSSPQGTRSLER*AVSSLESSWAE
Trigger: CTCCGCCCAAGATGATTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCGAGTCCCCTGAGGGCTACTATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS CCA 72 bp ACTTCCATTGACTGTTCACCAGCACATTCAGGTAGCTaGATGTCTCAAGGGATCTCTCCGGGGGCTCCAGCG +
Preference number: 6 (lower is better)
Translates to: TSIDCSPAHSGS*MSQGISPGAPA
Trigger: CGCTGGAGCCCCCGGAGAGATCCCTTGAGACATCCAGCTACCTGAATGTGCTGGTGAACAGTCAATGGAAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 72 bp CCACATCATCATACAGATCGTCCTGGCAATCCCGGCTaGGCAGGCCATCGATGTATGTGTTGGGCTCTGAGA +
Preference number: 6 (lower is better)
Translates to: PHHHTDRPGNPG*AGHRCMCWALR
Trigger: TCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CAA 72 bp TTGACATCTTTGGTCTCTGGGATCTCAGGGTGGCCGTaGATGGTGATCCCGTACTCCGCTGCTGACAGGTAC +
Preference number: 6 (lower is better)
Translates to: LTSLVSGISGWP*MVIPYSAADRY
Trigger: GTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATGTCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CAA 90 bp CAAATGGCTCAGCCTCTTCATAGTAGCCCTCAGGGGACTCGATCTTaGGAACGGTGGGCTGTTTCCTCTCTGGAATCATCTTGGGCGGAG +
Preference number: 6 (lower is better)
Translates to: QMAQPLHSSPQGTRS*ERWAVSSLESSWAE
Trigger: CTCCGCCCAAGATGATTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCGAGTCCCCTGAGGGCTACTATGAAGAGGCTGAGCCATTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS CAA 90 bp AGGCCCAGCACGATAACGTCAGCGTTCATCGGTGTGATCTTGAGCTaGTGTCCTTTCTTCCGCACTTGCTTCTCCTTGTGCACGACGCTG +
Preference number: 6 (lower is better)
Translates to: RPSTITSAFIGVILS*CPFFRTCFSLCTTL
Trigger: CAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000148049.8
CDS CAA 90 bp CTCTGCAGGCCCAGCACGATAACGTCAGCGTTCATCGGTGTGATCTaGAGCTTGTGTCCTTTCTTCCGCACTTGCTTCTCCTTGTGCACG +
Preference number: 6 (lower is better)
Translates to: LCRPSTITSAFIGVI*SLCPFFRTCFSLCT
Trigger: CGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000148049.8
CDS CAA 90 bp ATCTCCTCTGAAGACTTGGCCTCAAGCTTGGCTAGCTCCTCGCCGTaGTGGAGAATACGGAAGGAATACAGGTGGTCGGGGCTAGGATCT +
Preference number: 6 (lower is better)
Translates to: ISSEDLASSLASSSP*WRIRKEYRWSGLGS
Trigger: AGATCCTAGCCCCGACCACCTGTATTCCTTCCGTATTCTCCACAACGGCGAGGAGCTAGCCAAGCTTGAGGCCAAGTCTTCAGAGGAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS TCA 72 bp AGGGTGGCCGTTGATGGTGATCCCGTACTCCGCTGCTaGCAGGTACTTCTCAGCTATGTCTGGTTTCTGACA +
Preference number: 6 (lower is better)
Translates to: RVAVDGDPVLRC*QVLLSYVWFLT
Trigger: TGTCAGAAACCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000148049.8
CDS TCA 72 bp TACAGGAAACCCTTTCAGCATCCACATAGTCGTAGGTaGGCTCTTCCGGGTCAGTCTTGGAGCCCGACTCTG +
Preference number: 6 (lower is better)
Translates to: YRKPFQHPHSRR*ALPGQSWSPTL
Trigger: CAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTATGTGGATGCTGAAAGGGTTTCCTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 72 bp GGCAATCCCGGCTGGGCAGGCCATCGATGTATGTGTTaGGCTCTGAGAACTTTCTCTGCATCAGTAAGAGAG +
Preference number: 6 (lower is better)
Translates to: GNPGWAGHRCMC*ALRTFSASVRE
Trigger: CTCTCTTACTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 72 bp AGCTCTGATACCTCCACATCATCATACAGATCGTCCTaGCAATCCCGGCTGGGCAGGCCATCGATGTATGTG +
Preference number: 6 (lower is better)
Translates to: SSDTSTSSYRSS*QSRLGRPSMYV
Trigger: CACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CAA 72 bp CCTTTGCCTGTGACCATGACGGAAAGAGGCCTGTTCTaGAGCACAGATGCAGAGTTGACTGGCGTGGAGTCT +
Preference number: 6 (lower is better)
Translates to: PLPVTMTERGLF*STDAELTGVES
Trigger: AGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 72 bp GCCAGCAGAGCATTTCTTCTTGACATCTTTGGTCTCTaGGATCTCAGGGTGGCCGTTGATGGTGATCCCGTA +
Preference number: 6 (lower is better)
Translates to: ASRAFLLDIFGL*DLRVAVDGDPV
Trigger: TACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATGTCAAGAAGAAATGCTCTGCTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CAA 72 bp CAGCCTCTTCATAGTAGCCCTCAGGGGACTCGATCTTaGGAACGGTGGGCTGTTTCCTCTCTGGAATCATCT +
Preference number: 6 (lower is better)
Translates to: QPLHSSPQGTRS*ERWAVSSLESS
Trigger: AGATGATTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCGAGTCCCCTGAGGGCTACTATGAAGAGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS CAA 72 bp CCCAGCACGATAACGTCAGCGTTCATCGGTGTGATCTaGAGCTTGTGTCCTTTCTTCCGCACTTGCTTCTCC +
Preference number: 6 (lower is better)
Translates to: PSTITSAFIGVI*SLCPFFRTCFS
Trigger: GGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000148049.8
CDS CAA 72 bp TGGCAATCCCGGCTGGGCAGGCCATCGATGTATGTGTaGGGCTCTGAGAACTTTCTCTGCATCAGTAAGAGA +
Preference number: 6 (lower is better)
Translates to: WQSRLGRPSMYV*GSENFLCISKR
Trigger: TCTCTTACTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CAA 72 bp TTCTCCCATTCCTTGGCTTTCTGCAGGACAGTGCCTTaGCCTGTGACCATGACGGAAAGAGGCCTGTTCTTG +
Preference number: 6 (lower is better)
Translates to: FSHSLAFCRTVP*PVTMTERGLFL
Trigger: CAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAGGAATGGGAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CAA 90 bp CATTTCTTCTTGACATCTTTGGTCTCTGGGATCTCAGGGTGGCCGTaGATGGTGATCCCGTACTCCGCTGCTGACAGGTACTTCTCAGCT +
Preference number: 6 (lower is better)
Translates to: HFFLTSLVSGISGWP*MVIPYSAADRYFSA
Trigger: AGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATGTCAAGAAGAAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CAA 90 bp GGGGGCTCCAGCGAGGTAGATTTCTTCCTGCCCAGGTTCATAAGGTaGCTCAGCTTGAGGCCAGCAGAGCATTTCTTCTTGACATCTTTG +
Preference number: 6 (lower is better)
Translates to: GGSSEVDFFLPRFIR*LSLRPAEHFFLTSL
Trigger: CAAAGATGTCAAGAAGAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTATGAACCTGGGCAGGAAGAAATCTACCTCGCTGGAGCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CAA 90 bp AGATCGTCCTGGCAATCCCGGCTGGGCAGGCCATCGATGTATGTGTaGGGCTCTGAGAACTTTCTCTGCATCAGTAAGAGAGAGGTTTTG +
Preference number: 6 (lower is better)
Translates to: RSSWQSRLGRPSMYV*GSENFLCISKREVL
Trigger: CAAAACCTCTCTCTTACTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CAA 90 bp TCCATCCGGCATTCCTCGTCTATTTTCTTCAGTGTCTGCTCCAGCTaGGCCAGGACCCCCTTATCTGTGCATCTCAACAGGGTCTCTTTG +
Preference number: 6 (lower is better)
Translates to: SIRHSSSIFFSVCSS*ARTPLSVHLNRVSL
Trigger: CAAAGAGACCCTGTTGAGATGCACAGATAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCGGATGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CCA 72 bp AGCCTCTTCATAGTAGCCCTCAGGGGACTCGATCTTTaGAACGGTGGGCTGTTTCCTCTCTGGAATCATCTT +
Preference number: 6 (lower is better)
Translates to: SLFIVALRGLDL*NGGLFPLWNHL
Trigger: AAGATGATTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCGAGTCCCCTGAGGGCTACTATGAAGAGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000126964.8
ENSMUST00000148049.8
CDS CAA 72 bp CGCTTTACTTCCGCCTCTGTCCGATTCTTCCCAAGTTaGATCTCTGCACTGGTCACTCTCAGCTTCTCCTTC +
Preference number: 6 (lower is better)
Translates to: RFTSASVRFFPS*ISALVTLSFSF
Trigger: GAAGGAGAAGCTGAGAGTGACCAGTGCAGAGATCAAACTTGGGAAGAATCGGACAGAGGCGGAAGTAAAGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CAA 72 bp CATTCCTCGTCTATTTTCTTCAGTGTCTGCTCCAGCTaGGCCAGGACCCCCTTATCTGTGCATCTCAACAGG +
Preference number: 6 (lower is better)
Translates to: HSSSIFFSVCSS*ARTPLSVHLNR
Trigger: CCTGTTGAGATGCACAGATAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CAA 90 bp AGCGAGGTAGATTTCTTCCTGCCCAGGTTCATAAGGTTGCTCAGCTaGAGGCCAGCAGAGCATTTCTTCTTGACATCTTTGGTCTCTGGG +
Preference number: 6 (lower is better)
Translates to: SEVDFFLPRFIRLLS*RPAEHFFLTSLVSG
Trigger: CCCAGAGACCAAAGATGTCAAGAAGAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTATGAACCTGGGCAGGAAGAAATCTACCTCGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS TCA 72 bp GCTTTACTTCCGCCTCTGTCCGATTCTTCCCAAGTTTaGTCTCTGCACTGGTCACTCTCAGCTTCTCCTTCA +
Preference number: 6 (lower is better)
Translates to: ALLPPLSDSSQV*SLHWSLSASPS
Trigger: TGAAGGAGAAGCTGAGAGTGACCAGTGCAGAGATCAAACTTGGGAAGAATCGGACAGAGGCGGAAGTAAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CAA 72 bp ACGATAACGTCAGCGTTCATCGGTGTGATCTTGAGCTaGTGTCCTTTCTTCCGCACTTGCTTCTCCTTGTGC +
Preference number: 6 (lower is better)
Translates to: TITSAFIGVILS*CPFFRTCFSLC
Trigger: GCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
ENSMUST00000148049.8
CDS CCA 72 bp CTGAGAACTTTCTCTGCATCAGTAAGAGAGAGGTTTTaGCCGCACTCACAATACAGGAAACCCTTTCAGCAT +
Preference number: 6 (lower is better)
Translates to: LRTFSASVRERF*PHSQYRKPFQH
Trigger: ATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTTACTGATGCAGAGAAAGTTCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8
CDS CAA 72 bp TCTGAGAACTTTCTCTGCATCAGTAAGAGAGAGGTTTaGGCCGCACTCACAATACAGGAAACCCTTTCAGCA +
Preference number: 6 (lower is better)
Translates to: SENFLCISKREV*AALTIQETLSA
Trigger: TGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTTACTGATGCAGAGAAAGTTCTCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111584.9
ENSMUST00000118800.8
ENSMUST00000122359.8