RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AEBP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030232

Ensembl transcript IDs: ENSMUST00000032359.15, ENSMUST00000087614.11, ENSMUST00000095350.11, ENSMUST00000160836.8, ENSMUST00000161335.8, ENSMUST00000162903.7

Found 342 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGTTGGGGAAGACAATTCTCCGGTCTGTTCTCGCTTCAGACCACGTaGCTCCCAGGCATGGAACTCAGGCCACCATGCCTGTTGCCCAAC +
Preference number: 1 (lower is better)
Translates to: CWGRQFSGLFSLQTT*LPGMELRPPCLLPN
Trigger: GTTGGGCAACAGGCATGGTGGCCTGAGTTCCATGCCTGGGAGTCACGTGGTCTGAAGCGAGAACAGACCGGAGAATTGTCTTCCCCAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
3UTR GCA 90 bp AGACCACGTGACTCCCAGGCATGGAACTCAGGCCACCATGCCTGTTaGCCAACACCTTCATCGAGAGCCACCTCAATGGCACCTATTTCC +
Preference number: 1 (lower is better)
Translates to: RPRDSQAWNSGHHAC*PTPSSRATSMAPIS
Trigger: GGAAATAGGTGCCATTGAGGTGGCTCTCGATGAAGGTGTTGGGCAACAGGCATGGTGGCCTGAGTTCCATGCCTGGGAGTCACGTGGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
3UTR CCA 90 bp CAGCGACTCAGCCACTGTCAGAGGGAGTGCCATAAACTTCTATTATaGGTCTCCGTCCTCCCTCAGAGACTTTCTGGAAGGACGCCCGCC +
Preference number: 1 (lower is better)
Translates to: QRLSHCQRECHKLLL*VSVLPQRLSGRTPA
Trigger: GGCGGGCGTCCTTCCAGAAAGTCTCTGAGGGAGGACGGAGACCCATAATAGAAGTTTATGGCACTCCCTCTGACAGTGGCTGAGTCGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
3UTR GCA 90 bp AAGCAGCGAGCATGCAAAGCCTTTTCAGAAGCTGTTCCACTGAGTTaGCAGAGAGTGTCTGCGCAGTCTCCCACAGCGCCATTCCATGCC +
Preference number: 1 (lower is better)
Translates to: KQRACKAFSEAVPLS*QRVSAQSPTAPFHA
Trigger: GGCATGGAATGGCGCTGTGGGAGACTGCGCAGACACTCTCTGGCAACTCAGTGGAACAGCTTCTGAAAAGGCTTTGCATGCTCGCTGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
3UTR CCA 90 bp AATTCTCCGGTCTGTTCTCGCTTCAGACCACGTGACTCCCAGGCATaGAACTCAGGCCACCATGCCTGTTGCCCAACACCTTCATCGAGA +
Preference number: 1 (lower is better)
Translates to: NSPVCSRFRPRDSQA*NSGHHACCPTPSSR
Trigger: TCTCGATGAAGGTGTTGGGCAACAGGCATGGTGGCCTGAGTTCCATGCCTGGGAGTCACGTGGTCTGAAGCGAGAACAGACCGGAGAATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
3UTR TCA 90 bp AGCTTAAGCAGCGAGCATGCAAAGCCTTTTCAGAAGCTGTTCCACTaGGTTGCCAGAGAGTGTCTGCGCAGTCTCCCACAGCGCCATTCC +
Preference number: 1 (lower is better)
Translates to: SLSSEHAKPFQKLFH*VARECLRSLPQRHS
Trigger: GGAATGGCGCTGTGGGAGACTGCGCAGACACTCTCTGGCAACTCAGTGGAACAGCTTCTGAAAAGGCTTTGCATGCTCGCTGCTTAAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
3UTR TCA 90 bp GCAGTTGCCCACAGCACCGTACTGACAGGACAAACACTTTGTCAGTaGTTTTGTGTGGAGTACAATCCTGGCGGCCTTCGGGGGCATCAG +
Preference number: 1 (lower is better)
Translates to: AVAHSTVLTGQTLCQ*FCVEYNPGGLRGHQ
Trigger: CTGATGCCCCCGAAGGCCGCCAGGATTGTACTCCACACAAAATCACTGACAAAGTGTTTGTCCTGTCAGTACGGTGCTGTGGGCAACTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR GCA 90 bp CAAAGCCTTTTCAGAAGCTGTTCCACTGAGTTGCCAGAGAGTGTCTaGGCAGTCTCCCACAGCGCCATTCCATGCCATGTGGACTGCAGT +
Preference number: 1 (lower is better)
Translates to: QSLFRSCSTELPESV*AVSHSAIPCHVDCS
Trigger: ACTGCAGTCCACATGGCATGGAATGGCGCTGTGGGAGACTGCGCAGACACTCTCTGGCAACTCAGTGGAACAGCTTCTGAAAAGGCTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
3UTR GCA 90 bp GCTCCCAACAGTAAGGAACAGCGACTCAGCCACTGTCAGAGGGAGTaGCATAAACTTCTATTATGGGTCTCCGTCCTCCCTCAGAGACTT +
Preference number: 1 (lower is better)
Translates to: APNSKEQRLSHCQRE*HKLLLWVSVLPQRL
Trigger: AAGTCTCTGAGGGAGGACGGAGACCCATAATAGAAGTTTATGGCACTCCCTCTGACAGTGGCTGAGTCGCTGTTCCTTACTGTTGGGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
3UTR GCA 90 bp AGAATGTCAACCTTGAGGAACACACAACAGAGAACAGCAAGGCTCTaGAGCCTTCTAGAGAAACCACAGGCCAGACAGGTCCTGAGGACA +
Preference number: 1 (lower is better)
Translates to: RMSTLRNTQQRTARL*SLLEKPQARQVLRT
Trigger: TGTCCTCAGGACCTGTCTGGCCTGTGGTTTCTCTAGAAGGCTGCAGAGCCTTGCTGTTCTCTGTTGTGTGTTCCTCAAGGTTGACATTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR CCA 90 bp CAGCAGGGGTCAGGCATGCTATACTACTACTATACTATACTACTGTaGCCAACCCGAAGGGACTTCTCCACACCTGTTTGTCTCCTCCAC +
Preference number: 1 (lower is better)
Translates to: QQGSGMLYYYYTILL*PTRRDFSTPVCLLH
Trigger: GTGGAGGAGACAAACAGGTGTGGAGAAGTCCCTTCGGGTTGGCCACAGTAGTATAGTATAGTAGTAGTATAGCATGCCTGACCCCTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
3UTR TCA 90 bp TTCTTTCCTTTTTGGTTTGTTTGCCTCAGGATATCACTCGGGCCTTaGACTCTTGGAAATCCTCTTGCTTCGTCCTCCCAAATGCAGGGC +
Preference number: 1 (lower is better)
Translates to: FFPFWFVCLRISLGP*TLGNPLASSSQMQG
Trigger: GCCCTGCATTTGGGAGGACGAAGCAAGAGGATTTCCAAGAGTTCAAGGCCCGAGTGATATCCTGAGGCAAACAAACCAAAAAGGAAAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
3UTR CCA 90 bp CAGAGAGTGTCTGCGCAGTCTCCCACAGCGCCATTCCATGCCATGTaGACTGCAGTATATATTAATATATTCCACAGAAGACCTCCTTCA +
Preference number: 1 (lower is better)
Translates to: QRVSAQSPTAPFHAM*TAVYINIFHRRPPS
Trigger: TGAAGGAGGTCTTCTGTGGAATATATTAATATATACTGCAGTCCACATGGCATGGAATGGCGCTGTGGGAGACTGCGCAGACACTCTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
3UTR TCA 90 bp GGAGCTCTAGCCCCGTGCTCACTACTACTATCAACATGGCCATATTaGGTACAAACTGTGTGGTCTGTGTTCACTGCTCCAAAAATGTTA +
Preference number: 1 (lower is better)
Translates to: GALAPCSLLLSTWPY*VQTVWSVFTAPKML
Trigger: TAACATTTTTGGAGCAGTGAACACAGACCACACAGTTTGTACTCAATATGGCCATGTTGATAGTAGTAGTGAGCACGGGGCTAGAGCTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR TCA 90 bp ATTCTTTTCGCTAGAACAAACGTTCCTTGTGGTTGTAACAGAGTCTaGCTTACAGACTCTCATTCAATCCCTGAAAGACAAAGCACACAT +
Preference number: 1 (lower is better)
Translates to: ILFARTNVPCGCNRV*LTDSHSIPERQSTH
Trigger: ATGTGTGCTTTGTCTTTCAGGGATTGAATGAGAGTCTGTAAGTCAGACTCTGTTACAACCACAAGGAACGTTTGTTCTAGCGAAAAGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR TCA 90 bp TTTTCTTTACAAATAAACCACATATGTTTATGTATCTCTGCAACCTaGGGTCTTGTCAGACACATCACTGTGTCAGGCTTTCTACTCGAA +
Preference number: 1 (lower is better)
Translates to: FSLQINHICLCISAT*GLVRHITVSGFLLE
Trigger: TTCGAGTAGAAAGCCTGACACAGTGATGTGTCTGACAAGACCTCAGGTTGCAGAGATACATAAACATATGTGGTTTATTTGTAAAGAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR GCA 90 bp AAACAACAGATCATCCATGTTTTTAACTCTGGCAAATTCTACCTTTaGAGAAGATCATTTGCACATTTACTTGTTGGGGAAGACAATTCT +
Preference number: 1 (lower is better)
Translates to: KQQIIHVFNSGKFYL*RRSFAHLLVGEDNS
Trigger: AGAATTGTCTTCCCCAACAAGTAAATGTGCAAATGATCTTCTGCAAAGGTAGAATTTGCCAGAGTTAAAAACATGGATGATCTGTTGTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
3UTR GCA 90 bp TTTGAAATTTTCTTTACAAATAAACCACATATGTTTATGTATCTCTaGAACCTGAGGTCTTGTCAGACACATCACTGTGTCAGGCTTTCT +
Preference number: 1 (lower is better)
Translates to: FEIFFTNKPHMFMYL*NLRSCQTHHCVRLS
Trigger: AGAAAGCCTGACACAGTGATGTGTCTGACAAGACCTCAGGTTGCAGAGATACATAAACATATGTGGTTTATTTGTAAAGAAAATTTCAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR CAA 90 bp GTAGGTCCCTTTATTCTGTCTGTCAGTAAAGGCAGATACCATCCCTaGCTAAGCTCAACCCCCAGTGTCCCCTGCGCTGCAGTTGCCCAC +
Preference number: 2 (lower is better)
Translates to: VGPFILSVSKGRYHP*LSSTPSVPCAAVAH
Trigger: GTGGGCAACTGCAGCGCAGGGGACACTGGGGGTTGAGCTTAGCAAGGGATGGTATCTGCCTTTACTGACAGACAGAATAAAGGGACCTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR CAA 90 bp CTGCTCCTTCCACCCCAAGATGAACAGCGCAAGGATCACAGGAATTaGGTGTGGAAGGAAGTTTCCGGTCCACTGCTGCTCGACCCTTTG +
Preference number: 2 (lower is better)
Translates to: LLLPPQDEQRKDHRN*VWKEVSGPLLLDPL
Trigger: CAAAGGGTCGAGCAGCAGTGGACCGGAAACTTCCTTCCACACCAAATTCCTGTGATCCTTGCGCTGTTCATCTTGGGGTGGAAGGAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
3UTR-3UTR CCA 90 bp CATTTGGCTCGCTGCTCCTTCCACCCCAAGATGAACAGCGCAAGGATCACAGGAGCCAGGAGACACCTGTaGAGATGTGTGTTTACGCTG +
Preference number: 2 (lower is better)
Translates to: HLARCSFHPKMNSARITGARRHL*RCVFTL
Trigger: CAGCGTAAACACACATCTCCACAGGTGTCTCCTGGC...TCCTGTGATCCTTGCGCTGTTCATCTTGGGGTGGAAGGAGCAGCGAGCCAAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
3UTR CAA 90 bp TTTGCCTCAGGATATCACTCGGGCCTTGAACTCTTGGAAATCCTCTaGCTTCGTCCTCCCAAATGCAGGGCTTTAGTCAGCACACCCGGC +
Preference number: 2 (lower is better)
Translates to: FASGYHSGLELLEIL*LRPPKCRALVSTPG
Trigger: GCCGGGTGTGCTGACTAAAGCCCTGCATTTGGGAGGACGAAGCAAGAGGATTTCCAAGAGTTCAAGGCCCGAGTGATATCCTGAGGCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
3UTR-3UTR GCA 90 bp CTCAGAGACTTTCTGGAAGGACGCCCGCCCAATGCTTTGTTCTTAGACATTAACTTGCCAGAGAGTGTCTaGGCAGTCTCCCACAGCGCC +
Preference number: 2 (lower is better)
Translates to: LRDFLEGRPPNALFLDINLPESV*AVSHSA
Trigger: GGCGCTGTGGGAGACTGCGCAGACACTCTCTGGCAA...GTTAATGTCTAAGAACAAAGCATTGGGCGGGCGTCCTTCCAGAAAGTCTCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
3UTR-3UTR CCA 90 bp GTCAACCTTGAGGAACACACAACAGAGAACAGCAAGGCTCTGCAGCCTTCTAGACAAGCAAAGGGACCCTaGATACCTGGGCACGCAGAG +
Preference number: 2 (lower is better)
Translates to: VNLEEHTTENSKALQPSRQAKGP*IPGHAE
Trigger: CTCTGCGTGCCCAGGTATCCAGGGTCCCTTTGCTTG...TCTAGAAGGCTGCAGAGCCTTGCTGTTCTCTGTTGTGTGTTCCTCAAGGTTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR CAA 90 bp CCGTCCTCCCTCAGAGACTTTCTGGAAGGACGCCCGCCCAATGCTTaGTTCTTAGACATTAACAGTAGTACACAGTCCCTTCAGTCTGCA +
Preference number: 2 (lower is better)
Translates to: PSSLRDFLEGRPPNA*FLDINSSTQSLQSA
Trigger: TGCAGACTGAAGGGACTGTGTACTACTGTTAATGTCTAAGAACAAAGCATTGGGCGGGCGTCCTTCCAGAAAGTCTCTGAGGGAGGACGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
3UTR CAA 90 bp GCTGGCCATTCTCTCTCCTTACACGCAAGGCTGCTAGAAATGCATTaGGCCAGGGGGCCTATGGTCTCTAAGCACAAGATCTACTACTAC +
Preference number: 2 (lower is better)
Translates to: AGHSLSLHARLLEMH*ARGPMVSKHKIYYY
Trigger: GTAGTAGTAGATCTTGTGCTTAGAGACCATAGGCCCCCTGGCCAAATGCATTTCTAGCAGCCTTGCGTGTAAGGAGAGAGAATGGCCAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
3UTR-3UTR TCA 90 bp CAGAGGGAGTGCCATAAACTTCTATTATGGGTCTCCGTCCTCCCTCAGAGACTTCAGAAGCTGTTCCACTaGGTTGCCAGAGAGTGTCTG +
Preference number: 2 (lower is better)
Translates to: QRECHKLLLWVSVLPQRLQKLFH*VARECL
Trigger: CAGACACTCTCTGGCAACTCAGTGGAACAGCTTCTG...AAGTCTCTGAGGGAGGACGGAGACCCATAATAGAAGTTTATGGCACTCCCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
3UTR-3UTR CCA 90 bp CAACCCAACTCCTCCAAGCATTTGGCTCGCTGCTCCTTCCACCCCAAGATGAACTATACTATACTACTGTaGCCAACCCGAAGGGACTTC +
Preference number: 2 (lower is better)
Translates to: QPNSSKHLARCSFHPKMNYTILL*PTRRDF
Trigger: GAAGTCCCTTCGGGTTGGCCACAGTAGTATAGTATA...GTTCATCTTGGGGTGGAAGGAGCAGCGAGCCAAATGCTTGGAGGAGTTGGGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
3UTR CAA 90 bp TTTCTGTGTTCGCCAGTTAAATTTCAACCCAACTCCTCCAAGCATTaGGCTCGCTGCTCCTTCCACCCCAAGATGAACAGCGCAAGGATC +
Preference number: 2 (lower is better)
Translates to: FLCSPVKFQPNSSKH*ARCSFHPKMNSARI
Trigger: GATCCTTGCGCTGTTCATCTTGGGGTGGAAGGAGCAGCGAGCCAAATGCTTGGAGGAGTTGGGTTGAAATTTAACTGGCGAACACAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
3UTR-3UTR GCA 90 bp CAGCAGCCTCTCACAGATTATAGCTCCCTCTTAGCCTTTTCTGTTCCTCTGTCGAACCGGTTAAAGCCATaGCTTAGACTGGCTCTCCTA +
Preference number: 2 (lower is better)
Translates to: QQPLTDYSSLLAFSVPLSNRLKP*LRLALL
Trigger: TAGGAGAGCCAGTCTAAGGCATGGCTTTAACCGGTT...CGACAGAGGAACAGAAAAGGCTAAGAGGGAGCTATAATCTGTGAGAGGCTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
3UTR-3UTR GCA 90 bp GAGTGCTTTCTGCAGCCTGACTGCATAGCAGGCGCTTACTTTACGGTACCGCTCGTGTCCCCGCGTGTTTaGTTTTATGTATTTATGAAT +
Preference number: 2 (lower is better)
Translates to: ECFLQPDCIAGAYFTVPLVSPRV*FYVFMN
Trigger: ATTCATAAATACATAAAAGCAAACACGCGGGGACAC...GAGCGGTACCGTAAAGTAAGCGCCTGCTATGCAGTCAGGCTGCAGAAAGCACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
3UTR-3UTR GCA 90 bp GGAGTGAGGACTCCAAGGAAGGAGTGCTTTCTGCAGCCTGACTGCATAGCAGGCTTCTTATCAGAGTTCTaGAAAAGAACACAAATGGCA +
Preference number: 2 (lower is better)
Translates to: GVRTPRKECFLQPDCIAGFLSEF*KRTQMA
Trigger: TGCCATTTGTGTTCTTTTGCAGAACTCTGATAAGAA...GCCTGCTATGCAGTCAGGCTGCAGAAAGCACTCCTTCCTTGGAGTCCTCACTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
3UTR CAA 90 bp CGGAGCTCTAGCCCCGTGCTCACTACTACTATCAACATGGCCATATaGAGTACAAACTGTGTGGTCTGTGTTCACTGCTCCAAAAATGTT +
Preference number: 2 (lower is better)
Translates to: RSSSPVLTTTINMAI*STNCVVCVHCSKNV
Trigger: AACATTTTTGGAGCAGTGAACACAGACCACACAGTTTGTACTCAATATGGCCATGTTGATAGTAGTAGTGAGCACGGGGCTAGAGCTCCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR-3UTR GCA 90 bp ACACTGCTTCAACCACATTTACCCACTTTGATATTCAGTCAATATTATCTCATCTTGCCAGAGAGTGTCTaGGCAGTCTCCCACAGCGCC +
Preference number: 2 (lower is better)
Translates to: TLLQPHLPTLIFSQYYLILPESV*AVSHSA
Trigger: GGCGCTGTGGGAGACTGCGCAGACACTCTCTGGCAA...GATGAGATAATATTGACTGAATATCAAAGTGGGTAAATGTGGTTGAAGCAGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR CAA 90 bp AGTACACAGTCCCTTCAGTCTGCAGACATCTCTCCTAAAGGTGCTTaGTTAGCAATCCCTCTGGCAGCACTAGTGAATTACAATTTCCTT +
Preference number: 2 (lower is better)
Translates to: STQSLQSADISPKGA*LAIPLAALVNYNFL
Trigger: AAGGAAATTGTAATTCACTAGTGCTGCCAGAGGGATTGCTAACAAAGCACCTTTAGGAGAGATGTCTGCAGACTGAAGGGACTGTGTACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
3UTR CAA 90 bp ACTCTGGCAAATTCTACCTTTGCAGAAGATCATTTGCACATTTACTaGTTGGGGAAGACAATTCTCCGGTCTGTTCTCGCTTCAGACCAC +
Preference number: 2 (lower is better)
Translates to: TLANSTFAEDHLHIY*LGKTILRSVLASDH
Trigger: GTGGTCTGAAGCGAGAACAGACCGGAGAATTGTCTTCCCCAACAAGTAAATGTGCAAATGATCTTCTGCAAAGGTAGAATTTGCCAGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
3UTR-3UTR CCA 90 bp CCCAACAGTAAGGAACAGCGACTCAGCCACTGTCAGAGGGAGTGCCATAAACTTTACACACTGTCAAGATaGTTATCTTACAGTGCTTTT +
Preference number: 2 (lower is better)
Translates to: PNSKEQRLSHCQRECHKLYTLSR*LSYSAF
Trigger: AAAAGCACTGTAAGATAACCATCTTGACAGTGTGTA...AAGTTTATGGCACTCCCTCTGACAGTGGCTGAGTCGCTGTTCCTTACTGTTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
3UTR-3UTR TCA 90 bp CAACAGATCATCCATGTTTTTAACTCTGGCAAATTCTACCTTTGCAGAAGATCACAGAAGCTGTTCCACTaGGTTGCCAGAGAGTGTCTG +
Preference number: 2 (lower is better)
Translates to: QQIIHVFNSGKFYLCRRSQKLFH*VARECL
Trigger: CAGACACTCTCTGGCAACTCAGTGGAACAGCTTCTG...TGATCTTCTGCAAAGGTAGAATTTGCCAGAGTTAAAAACATGGATGATCTGTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR-3UTR GCA 90 bp ATATTAACACGCTGTCCCCATGAGAGAGAGAGAGAGACCCTAGTCCTGAAAAGGGTGTCCCCGCGTGTTTaGTTTTATGTATTTATGAAT +
Preference number: 2 (lower is better)
Translates to: ILTRCPHERERETLVLKRVSPRV*FYVFMN
Trigger: ATTCATAAATACATAAAAGCAAACACGCGGGGACAC...CCTTTTCAGGACTAGGGTCTCTCTCTCTCTCTCATGGGGACAGCGTGTTAATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
3UTR CAA 90 bp GGATACCTGGGCACGCAGAGGCTAATCAACAACCAGCAGCATGGTTaGACATCACAAATTTTCTACATTGACAGTAATGAATGTTCTCTA +
Preference number: 2 (lower is better)
Translates to: GYLGTQRLINNQQHG*TSQIFYIDSNECSL
Trigger: TAGAGAACATTCATTACTGTCAATGTAGAAAATTTGTGATGTCAAACCATGCTGCTGGTTGTTGATTAGCCTCTGCGTGCCCAGGTATCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR-3UTR GCA 90 bp GAGAAGCCTTTCTGTGTTCGCCAGTTAAATTTCAACCCAACTCCTCCAAGCATTCACAAAGCCTGCAGTTaGAGTGAAATTAAGTCTATC +
Preference number: 2 (lower is better)
Translates to: EKPFCVRQLNFNPTPPSIHKACS*SEIKSI
Trigger: GATAGACTTAATTTCACTGCAACTGCAGGCTTTGTG...AATGCTTGGAGGAGTTGGGTTGAAATTTAACTGGCGAACACAGAAAGGCTTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
3UTR-3UTR CCA 90 bp GCCATAAACTTCTATTATGGGTCTCCGTCCTCCCTCAGAGACTTTCTGGAAGGATACACACTGTCAAGATaGTTATCTTACAGTGCTTTT +
Preference number: 2 (lower is better)
Translates to: AINFYYGSPSSLRDFLEGYTLSR*LSYSAF
Trigger: AAAAGCACTGTAAGATAACCATCTTGACAGTGTGTA...TCCTTCCAGAAAGTCTCTGAGGGAGGACGGAGACCCATAATAGAAGTTTATGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
3UTR-3UTR CCA 90 bp ACATTAACAGTAGTACACAGTCCCTTCAGTCTGCAGACATCTCTCCTAAAGGTGCCATTCCATGCCATGTaGACTGCAGTATATATTAAT +
Preference number: 2 (lower is better)
Translates to: TLTVVHSPFSLQTSLLKVPFHAM*TAVYIN
Trigger: ATTAATATATACTGCAGTCCACATGGCATGGAATGG...CACCTTTAGGAGAGATGTCTGCAGACTGAAGGGACTGTGTACTACTGTTAATGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
3UTR-3UTR GCA 90 bp AATACTCAAGCAAGGTCTACAATCATCGGTCAATTAATGACTTACAAGAACATGTTCCATATGGCTTCTTaGCTGCCAAGCAAGAAAGTG +
Preference number: 2 (lower is better)
Translates to: NTQARSTIIGQLMTYKNMFHMAS*LPSKKV
Trigger: CACTTTCTTGCTTGGCAGGCAAGAAGCCATATGGAA...CATGTTCTTGTAAGTCATTAATTGACCGATGATTGTAGACCTTGCTTGAGTATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
3UTR GCA 72 bp GCTAAGCTCAACCCCCAGTGTCCCCTGCGCTGCAGTTaGCCACAGCACCGTACTGACAGGACAAACACTTTG +
Preference number: 3 (lower is better)
Translates to: AKLNPQCPLRCS*PQHRTDRTNTL
Trigger: CAAAGTGTTTGTCCTGTCAGTACGGTGCTGTGGGCAACTGCAGCGCAGGGGACACTGGGGGTTGAGCTTAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR CCA 72 bp GTCTGTTCTCGCTTCAGACCACGTGACTCCCAGGCATaGAACTCAGGCCACCATGCCTGTTGCCCAACACCT +
Preference number: 3 (lower is better)
Translates to: VCSRFRPRDSQA*NSGHHACCPTP
Trigger: AGGTGTTGGGCAACAGGCATGGTGGCCTGAGTTCCATGCCTGGGAGTCACGTGGTCTGAAGCGAGAACAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
3UTR TCA 72 bp AGACAATTCTCCGGTCTGTTCTCGCTTCAGACCACGTaGCTCCCAGGCATGGAACTCAGGCCACCATGCCTG +
Preference number: 3 (lower is better)
Translates to: RQFSGLFSLQTT*LPGMELRPPCL
Trigger: CAGGCATGGTGGCCTGAGTTCCATGCCTGGGAGTCACGTGGTCTGAAGCGAGAACAGACCGGAGAATTGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
3UTR GCA 72 bp TTCAGAAGCTGTTCCACTGAGTTGCCAGAGAGTGTCTaGGCAGTCTCCCACAGCGCCATTCCATGCCATGTG +
Preference number: 3 (lower is better)
Translates to: FRSCSTELPESV*AVSHSAIPCHV
Trigger: CACATGGCATGGAATGGCGCTGTGGGAGACTGCGCAGACACTCTCTGGCAACTCAGTGGAACAGCTTCTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
3UTR GCA 72 bp AGGACTCCAAGGAAGGAGTGCTTTCTGCAGCCTGACTaGATAGCAGGCGCTTACTTTACGGTACCGCTCCCA +
Preference number: 3 (lower is better)
Translates to: RTPRKECFLQPD*IAGAYFTVPLP
Trigger: TGGGAGCGGTACCGTAAAGTAAGCGCCTGCTATGCAGTCAGGCTGCAGAAAGCACTCCTTCCTTGGAGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
3UTR TCA 72 bp GTGTCCCCTGCGCTGCAGTTGCCCACAGCACCGTACTaGCAGGACAAACACTTTGTCAGTGATTTTGTGTGG +
Preference number: 3 (lower is better)
Translates to: VSPALQLPTAPY*QDKHFVSDFVW
Trigger: CCACACAAAATCACTGACAAAGTGTTTGTCCTGTCAGTACGGTGCTGTGGGCAACTGCAGCGCAGGGGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR CCA 72 bp CACCCCAAGATGAACAGCGCAAGGATCACAGGAATTTaGTGTGGAAGGAAGTTTCCGGTCCACTGCTGCTCG +
Preference number: 3 (lower is better)
Translates to: HPKMNSARITGI*CGRKFPVHCCS
Trigger: CGAGCAGCAGTGGACCGGAAACTTCCTTCCACACCAAATTCCTGTGATCCTTGCGCTGTTCATCTTGGGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
3UTR-3UTR CAA 90 bp CAGCGACTCAGCCACTGTCAGAGGGAGTGCCATAAACTTCTATTATGGGTCTCCAGCTGTTCCACTGAGTaGCCAGAGAGTGTCTGCGCA +
Preference number: 3 (lower is better)
Translates to: QRLSHCQRECHKLLLWVSSCSTE*PESVCA
Trigger: TGCGCAGACACTCTCTGGCAACTCAGTGGAACAGCT...GGAGACCCATAATAGAAGTTTATGGCACTCCCTCTGACAGTGGCTGAGTCGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
3UTR GCA 72 bp ACCTTGAGGAACACACAACAGAGAACAGCAAGGCTCTaGAGCCTTCTAGAGAAACCACAGGCCAGACAGGTC +
Preference number: 3 (lower is better)
Translates to: TLRNTQQRTARL*SLLEKPQARQV
Trigger: GACCTGTCTGGCCTGTGGTTTCTCTAGAAGGCTGCAGAGCCTTGCTGTTCTCTGTTGTGTGTTCCTCAAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR CCA 72 bp CAAGATGAACAGCGCAAGGATCACAGGAATTTGGTGTaGAAGGAAGTTTCCGGTCCACTGCTGCTCGACCCT +
Preference number: 3 (lower is better)
Translates to: QDEQRKDHRNLV*KEVSGPLLLDP
Trigger: AGGGTCGAGCAGCAGTGGACCGGAAACTTCCTTCCACACCAAATTCCTGTGATCCTTGCGCTGTTCATCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
3UTR-3UTR CAA 90 bp CAGCAGCCTCTCACAGATTATAGCTCCCTCTTAGCCTTTTCTGTTCCTCTGTCGCTTCTCCACACCTGTTaGTCTCCTCCACTTCCACCT +
Preference number: 3 (lower is better)
Translates to: QQPLTDYSSLLAFSVPLSLLHTC*SPPLPP
Trigger: AGGTGGAAGTGGAGGAGACAAACAGGTGTGGAGAAG...CGACAGAGGAACAGAAAAGGCTAAGAGGGAGCTATAATCTGTGAGAGGCTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
3UTR TCA 72 bp CACAGCACCGTACTGACAGGACAAACACTTTGTCAGTaGTTTTGTGTGGAGTACAATCCTGGCGGCCTTCGG +
Preference number: 3 (lower is better)
Translates to: HSTVLTGQTLCQ*FCVEYNPGGLR
Trigger: CCGAAGGCCGCCAGGATTGTACTCCACACAAAATCACTGACAAAGTGTTTGTCCTGTCAGTACGGTGCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR GCA 72 bp AGTAAGGAACAGCGACTCAGCCACTGTCAGAGGGAGTaGCATAAACTTCTATTATGGGTCTCCGTCCTCCCT +
Preference number: 3 (lower is better)
Translates to: SKEQRLSHCQRE*HKLLLWVSVLP
Trigger: AGGGAGGACGGAGACCCATAATAGAAGTTTATGGCACTCCCTCTGACAGTGGCTGAGTCGCTGTTCCTTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
3UTR GCA 72 bp AAATTTCAACCCAACTCCTCCAAGCATTTGGCTCGCTaGTCCTTCCACCCCAAGATGAACAGCGCAAGGATC +
Preference number: 3 (lower is better)
Translates to: KFQPNSSKHLAR*SFHPKMNSARI
Trigger: GATCCTTGCGCTGTTCATCTTGGGGTGGAAGGAGCAGCGAGCCAAATGCTTGGAGGAGTTGGGTTGAAATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
3UTR CCA 72 bp AGCCACTGTCAGAGGGAGTGCCATAAACTTCTATTATaGGTCTCCGTCCTCCCTCAGAGACTTTCTGGAAGG +
Preference number: 3 (lower is better)
Translates to: SHCQRECHKLLL*VSVLPQRLSGR
Trigger: CCTTCCAGAAAGTCTCTGAGGGAGGACGGAGACCCATAATAGAAGTTTATGGCACTCCCTCTGACAGTGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
3UTR TCA 72 bp AGTAAAAACTGCTGGTATTGCTGTCACTGTAGGGAGTaGGGACTCCAAGGAAGGAGTGCTTTCTGCAGCCTG +
Preference number: 3 (lower is better)
Translates to: SKNCWYCCHCRE*GLQGRSAFCSL
Trigger: CAGGCTGCAGAAAGCACTCCTTCCTTGGAGTCCTCACTCCCTACAGTGACAGCAATACCAGCAGTTTTTACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
3UTR TCA 72 bp AAACTAGCTCACTTACAAGTGTCAAGCCCAAGTCAATaGCAAGCAAAGGGACCCTGGATACCTGGGCACGCA +
Preference number: 3 (lower is better)
Translates to: KLAHLQVSSPSQ*QAKGPWIPGHA
Trigger: TGCGTGCCCAGGTATCCAGGGTCCCTTTGCTTGTCATTGACTTGGGCTTGACACTTGTAAGTGAGCTAGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR GCA 72 bp TCCATATCATTCTTGCTGCGAAACCGGTTAAAGCCATaGCTTAGACTGGCTCTCCTAGTCAACGGGGCTTTG +
Preference number: 3 (lower is better)
Translates to: SISFLLRNRLKP*LRLALLVNGAL
Trigger: CAAAGCCCCGTTGACTAGGAGAGCCAGTCTAAGGCATGGCTTTAACCGGTTTCGCAGCAAGAATGATATGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
3UTR-3UTR CAA 90 bp CCCAACAGTAAGGAACAGCGACTCAGCCACTGTCAGAGGGAGTGCCATAAACTTGGTGTCCCCGCGTGTTaGCTTTTATGTATTTATGAA +
Preference number: 3 (lower is better)
Translates to: PNSKEQRLSHCQRECHKLGVPAC*LLCIYE
Trigger: TTCATAAATACATAAAAGCAAACACGCGGGGACACC...AAGTTTATGGCACTCCCTCTGACAGTGGCTGAGTCGCTGTTCCTTACTGTTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
3UTR-3UTR CAA 90 bp CTTTCCTTTTTGGTTTGTTTGCCTCAGGATATCACTCGGGCCTTGAACTCTTGGGGAGGAAGGAAGGGGTaGACTGTAATGTGCAACTTT +
Preference number: 3 (lower is better)
Translates to: LSFLVCLPQDITRALNSWGGRKG*TVMCNF
Trigger: AAAGTTGCACATTACAGTCAACCCCTTCCTTCCTCC...CCAAGAGTTCAAGGCCCGAGTGATATCCTGAGGCAAACAAACCAAAAAGGAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR TCA 72 bp TTTTGGTTTGTTTGCCTCAGGATATCACTCGGGCCTTaGACTCTTGGAAATCCTCTTGCTTCGTCCTCCCAA +
Preference number: 3 (lower is better)
Translates to: FWFVCLRISLGP*TLGNPLASSSQ
Trigger: TTGGGAGGACGAAGCAAGAGGATTTCCAAGAGTTCAAGGCCCGAGTGATATCCTGAGGCAAACAAACCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
3UTR GCA 72 bp AGAAATTTAAATGAAAAGTTCCACCCAAACGCCATGTaGTTCGGTGCCTGTGGCAGCACTTCCTGTGAAGTG +
Preference number: 3 (lower is better)
Translates to: RNLNEKFHPNAM*FGACGSTSCEV
Trigger: CACTTCACAGGAAGTGCTGCCACAGGCACCGAAGCACATGGCGTTTGGGTGGAACTTTTCATTTAAATTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR-3UTR CAA 90 bp ACATTAACAGTAGTACACAGTCCCTTCAGTCTGCAGACATCTCTCCTAAAGGTGCTTTCCCTAAGCCCATaGTCAGTGACTAAGACTGCA +
Preference number: 3 (lower is better)
Translates to: TLTVVHSPFSLQTSLLKVLSLSP*SVTKTA
Trigger: TGCAGTCTTAGTCACTGACAATGGGCTTAGGGAAAG...CACCTTTAGGAGAGATGTCTGCAGACTGAAGGGACTGTGTACTACTGTTAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
3UTR CCA 72 bp AAAATAACATCAACAATCCTTCGCACTGGAGAGGTTTaGGTACCCACGCGTAGGTCCCTTTATTCTGTCTGT +
Preference number: 3 (lower is better)
Translates to: KITSTILRTGEV*VPTRRSLYSVC
Trigger: ACAGACAGAATAAAGGGACCTACGCGTGGGTACCCAAACCTCTCCAGTGCGAAGGATTGTTGATGTTATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR CCA 72 bp TCAGGCATGCTATACTACTACTATACTATACTACTGTaGCCAACCCGAAGGGACTTCTCCACACCTGTTTGT +
Preference number: 3 (lower is better)
Translates to: SGMLYYYYTILL*PTRRDFSTPVC
Trigger: ACAAACAGGTGTGGAGAAGTCCCTTCGGGTTGGCCACAGTAGTATAGTATAGTAGTAGTATAGCATGCCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
3UTR-3UTR CAA 90 bp AAATTTAGAGTAAAAACTGCTGGTATTGCTGTCACTGTAGGGAGTGAGGACTCCCTTTCCCTAAGCCCATaGTCAGTGACTAAGACTGCA +
Preference number: 3 (lower is better)
Translates to: KFRVKTAGIAVTVGSEDSLSLSP*SVTKTA
Trigger: TGCAGTCTTAGTCACTGACAATGGGCTTAGGGAAAG...GGAGTCCTCACTCCCTACAGTGACAGCAATACCAGCAGTTTTTACTCTAAATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
3UTR-3UTR CAA 90 bp GAGAAGCCTTTCTGTGTTCGCCAGTTAAATTTCAACCCAACTCCTCCAAGCATTAAGGATCACAGGAATTaGGTGTGGAAGGAAGTTTCC +
Preference number: 3 (lower is better)
Translates to: EKPFCVRQLNFNPTPPSIKDHRN*VWKEVS
Trigger: GGAAACTTCCTTCCACACCAAATTCCTGTGATCCTT...AATGCTTGGAGGAGTTGGGTTGAAATTTAACTGGCGAACACAGAAAGGCTTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
3UTR TCA 72 bp AAAGACACATTTTCTTCAGGCAGAGAATGTCAACCTTaGGGAACACACAACAGAGAACAGCAAGGCTCTGCA +
Preference number: 3 (lower is better)
Translates to: KDTFSSGRECQP*GTHNREQQGSA
Trigger: TGCAGAGCCTTGCTGTTCTCTGTTGTGTGTTCCTCAAGGTTGACATTCTCTGCCTGAAGAAAATGTGTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR CCA 72 bp CTACCTTTGCAGAAGATCATTTGCACATTTACTTGTTaGGGAAGACAATTCTCCGGTCTGTTCTCGCTTCAG +
Preference number: 3 (lower is better)
Translates to: LPLQKIICTFTC*GRQFSGLFSLQ
Trigger: CTGAAGCGAGAACAGACCGGAGAATTGTCTTCCCCAACAAGTAAATGTGCAAATGATCTTCTGCAAAGGTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
3UTR-3UTR CAA 90 bp ACATTAACAGTAGTACACAGTCCCTTCAGTCTGCAGACATCTCTCCTAAAGGTGGGTGTCCCCGCGTGTTaGCTTTTATGTATTTATGAA +
Preference number: 3 (lower is better)
Translates to: TLTVVHSPFSLQTSLLKVGVPAC*LLCIYE
Trigger: TTCATAAATACATAAAAGCAAACACGCGGGGACACC...CACCTTTAGGAGAGATGTCTGCAGACTGAAGGGACTGTGTACTACTGTTAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
3UTR-3UTR CAA 90 bp CTTTTTCTGAGAGAGAAGCCTTTCTGTGTTCGCCAGTTAAATTTCAACCCAACTTTTCAGATATTTTCCTaGGCAGCAGCCTCTCACAGA +
Preference number: 3 (lower is better)
Translates to: LFLREKPFCVRQLNFNPTFQIFS*AAASHR
Trigger: TCTGTGAGAGGCTGCTGCCAAGGAAAATATCTGAAA...AGTTGGGTTGAAATTTAACTGGCGAACACAGAAAGGCTTCTCTCTCAGAAAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
3UTR TCA 72 bp GCTAGAACAAACGTTCCTTGTGGTTGTAACAGAGTCTaGCTTACAGACTCTCATTCAATCCCTGAAAGACAA +
Preference number: 3 (lower is better)
Translates to: ARTNVPCGCNRV*LTDSHSIPERQ
Trigger: TTGTCTTTCAGGGATTGAATGAGAGTCTGTAAGTCAGACTCTGTTACAACCACAAGGAACGTTTGTTCTAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
CDS-3UTR GCA 90 bp TGCCCATCCGCAGTGCTTCCCCCTCGTCCCTCAGGCTCCATGACTGTTCCATGCCATCGCCGCTGCTGCTaGTCGCCGCGCCCGGGCTCA +
Preference number: 4 (lower is better)
Translates to: CPSAVLPPRPSGSMTVPCHRRCC*SPRPGS
Trigger: TGAGCCCGGGCGCGGCGAGCAGCAGCAGCGGCGATG...GCATGGAACAGTCATGGAGCCTGAGGGACGAGGGGGAAGCACTGCGGATGGGCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087614.11
CDS-3UTR GCA 90 bp TCCGCAGTGCTTCCCCCTCGTCCCTCAGGCTCCATGACTGTTCCATGCCTACCTCCAGGCTCTCGGCGCTaGTCTCCTCCTCCGCGCCGC +
Preference number: 4 (lower is better)
Translates to: SAVLPPRPSGSMTVPCLPPGSRR*SPPPRR
Trigger: GCGGCGCGGAGGAGGAGAGCAGCGCCGAGAGCCTGG...AGGTAGGCATGGAACAGTCATGGAGCCTGAGGGACGAGGGGGAAGCACTGCGGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087614.11
CDS-3UTR GCA 90 bp GGAGTGAGGACTCCAAGGAAGGAGTGCTTTCTGCAGCCTGACTGCATAGCAGGCCGCGGCCACCGCCTCTaGCTCCGCCTCCTCGTCATC +
Preference number: 4 (lower is better)
Translates to: GVRTPRKECFLQPDCIAGRGHRL*LRLLVI
Trigger: GATGACGAGGAGGCGGAGGCAGAGGCGGTGGCCGCG...GCCTGCTATGCAGTCAGGCTGCAGAAAGCACTCCTTCCTTGGAGTCCTCACTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087614.11
CDS-3UTR GCA 90 bp CAACCCAACTCCTCCAAGCATTTGGCTCGCTGCTCCTTCCACCCCAAGATGAACGCGTCTCGTCGCCGCTaGAGCCGCCGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: QPNSSKHLARCSFHPKMNASRRR*SRRCCC
Trigger: GCAGCAGCAGCGGCGGCTGCAGCGGCGACGAGACGC...GTTCATCTTGGGGTGGAAGGAGCAGCGAGCCAAATGCTTGGAGGAGTTGGGTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR GCA 90 bp TTTACGGTACCGCTCCCAACAGTAAGGAACAGCGACTCAGCCACTGTCAGAGGGCGCCGCCGCTGCTGCTaGCCTCGTCCTCGTCGTCCT +
Preference number: 4 (lower is better)
Translates to: FTVPLPTVRNSDSATVRGRRRCC*PRPRRP
Trigger: AGGACGACGAGGACGAGGGCAGCAGCAGCGGCGGCG...CCCTCTGACAGTGGCTGAGTCGCTGTTCCTTACTGTTGGGAGCGGTACCGTAAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087614.11
CDS-3UTR GCA 90 bp CATTTGGCTCGCTGCTCCTTCCACCCCAAGATGAACAGCGCAAGGATCACAGGACGCCGCCGCTGCTGCTaGCCTCGTCCTCGTCGTCCT +
Preference number: 4 (lower is better)
Translates to: HLARCSFHPKMNSARITGRRRCC*PRPRRP
Trigger: AGGACGACGAGGACGAGGGCAGCAGCAGCGGCGGCG...TCCTGTGATCCTTGCGCTGTTCATCTTGGGGTGGAAGGAGCAGCGAGCCAAATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR GCA 90 bp TGTCTCCTCCACTTCCACCTACAAGGAGGGCAGAGAGTATGCCACAGAGCACATCCAGGCTCTCGGCGCTaGTCTCCTCCTCCGCGCCGC +
Preference number: 4 (lower is better)
Translates to: CLLHFHLQGGQRVCHRAHPGSRR*SPPPRR
Trigger: GCGGCGCGGAGGAGGAGAGCAGCGCCGAGAGCCTGG...ATGTGCTCTGTGGCATACTCTCTGCCCTCCTTGTAGGTGGAAGTGGAGGAGACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR GCA 90 bp TATACTACTGTGGCCAACCCGAAGGGACTTCTCCACACCTGTTTGTCTCCTCCACATCGCCGCTGCTGCTaGTCGCCGCGCCCGGGCTCA +
Preference number: 4 (lower is better)
Translates to: YTTVANPKGLLHTCLSPPHRRCC*SPRPGS
Trigger: TGAGCCCGGGCGCGGCGAGCAGCAGCAGCGGCGATG...TGGAGGAGACAAACAGGTGTGGAGAAGTCCCTTCGGGTTGGCCACAGTAGTATA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR GCA 90 bp GGAGTGAGGACTCCAAGGAAGGAGTGCTTTCTGCAGCCTGACTGCATAGCAGGCCCACGCTACTGCTGCTaGTACCGCCACCGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: GVRTPRKECFLQPDCIAGPRYCC*YRHRCC
Trigger: GCAGCAGCGGTGGCGGTAGCAGCAGCAGTAGCGTGG...GCCTGCTATGCAGTCAGGCTGCAGAAAGCACTCCTTCCTTGGAGTCCTCACTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087614.11
CDS-3UTR CCA 90 bp TGCCCATCCGCAGTGCTTCCCCCTCGTCCCTCAGGCTCCATGACTGTTCCATGCGTGGTCTGCCAGGTCTaGGCTGGAGTTGAAGCATGC +
Preference number: 4 (lower is better)
Translates to: CPSAVLPPRPSGSMTVPCVVCQV*AGVEAC
Trigger: GCATGCTTCAACTCCAGCCCAGACCTGGCAGACCAC...GCATGGAACAGTCATGGAGCCTGAGGGACGAGGGGGAAGCACTGCGGATGGGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR GCA 90 bp CAGAGGGAGTGCCATAAACTTCTATTATGGGTCTCCGTCCTCCCTCAGAGACTTGCGTCTCGTCGCCGCTaGAGCCGCCGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: QRECHKLLLWVSVLPQRLASRRR*SRRCCC
Trigger: GCAGCAGCAGCGGCGGCTGCAGCGGCGACGAGACGC...AAGTCTCTGAGGGAGGACGGAGACCCATAATAGAAGTTTATGGCACTCCCTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087614.11
CDS-3UTR TCA 90 bp CCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATCGGGGGACAGCGGGCTaGGGCGGGAGAGCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: PSPEKGATRHTAILFNSDRGTAG*GGRAPP
Trigger: TGGAGGAGCTCTCCCGCCTCAGCCCGCTGTCCCCCG...ATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087614.11
CDS-3UTR GCA 90 bp GCATGGAACTCAGGCCACCATGCCTGTTGCCCAACACCTTCATCGAGAGCCACCGGAGCGAATGTGGTCTaGCAGGTCTGGGCTGGAGTT +
Preference number: 4 (lower is better)
Translates to: AWNSGHHACCPTPSSRATGANVV*QVWAGV
Trigger: AACTCCAGCCCAGACCTGGCAGACCACATTCGCTCC...GGTGGCTCTCGATGAAGGTGTTGGGCAACAGGCATGGTGGCCTGAGTTCCATGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
CDS-3UTR GCA 90 bp ACAGGTGAGGTAACCCAAGACCTTAGGGCAATAGCAGCCAGGAGACACCTGTGGTCGACACCACGCTACTaGTGCTGCTACCGCCACCGC +
Preference number: 4 (lower is better)
Translates to: TGEVTQDLRAIAARRHLWSTPRY*CCYRHR
Trigger: GCGGTGGCGGTAGCAGCAGCAGTAGCGTGGTGTCGA...CCACAGGTGTCTCCTGGCTGCTATTGCCCTAAGGTCTTGGGTTACCTCACCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR GCA 90 bp TGTCTCCTCCACTTCCACCTACAAGGAGGGCAGAGAGTATGCCACAGAGCACATTGTCCTCCGAGTCCATaGGGCTCAGCGGCTCCCCGT +
Preference number: 4 (lower is better)
Translates to: CLLHFHLQGGQRVCHRAHCPPSP*GSAAPR
Trigger: ACGGGGAGCCGCTGAGCCGCATGGACTCGGAGGACA...ATGTGCTCTGTGGCATACTCTCTGCCCTCCTTGTAGGTGGAAGTGGAGGAGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CCA 90 bp CTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTCGCCCCGCGGTCCCTTaGGCTCCTCCAGGCCCTCCT +
Preference number: 4 (lower is better)
Translates to: LVLKREPPDTRQYSLTVIRPAVP*APPGPP
Trigger: AGGAGGGCCTGGAGGAGCCCAAGGGACCGCGGGGCG...AATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087614.11
CDS-3UTR TCA 90 bp CAACCCAACTCCTCCAAGCATTTGGCTCGCTGCTCCTTCCACCCCAAGATGAACCGAGCTAGCCCTCCCTaGGAAGCAAAGCTGGCATTG +
Preference number: 4 (lower is better)
Translates to: QPNSSKHLARCSFHPKMNRASPP*EAKLAL
Trigger: CAATGCCAGCTTTGCTTCTCAGGGAGGGCTAGCTCG...GTTCATCTTGGGGTGGAAGGAGCAGCGAGCCAAATGCTTGGAGGAGTTGGGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR TCA 90 bp GAAATCCTCTTGCTTCGTCCTCCCAAATGCAGGGCTTTAGTCAGCACACCCGGCCGAGCTAGCCCTCCCTaGGAAGCAAAGCTGGCATTG +
Preference number: 4 (lower is better)
Translates to: EILLLRPPKCRALVSTPGRASPP*EAKLAL
Trigger: CAATGCCAGCTTTGCTTCTCAGGGAGGGCTAGCTCG...GCCGGGTGTGCTGACTAAAGCCCTGCATTTGGGAGGACGAAGCAAGAGGATTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR TCA 90 bp CTCGCTTCAGACCACGTGACTCCCAGGCATGGAACTCAGGCCACCATGCCTGTTAGGAGTTCTGCTGACTaGAGTGTGTGGGTACATGGC +
Preference number: 4 (lower is better)
Translates to: LASDHVTPRHGTQATMPVRSSAD*SVWVHG
Trigger: GCCATGTACCCACACACTTCAGTCAGCAGAACTCCT...AACAGGCATGGTGGCCTGAGTTCCATGCCTGGGAGTCACGTGGTCTGAAGCGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR TCA 90 bp TGTTCTCGCTTCAGACCACGTGACTCCCAGGCATGGAACTCAGGCCACCATGCCAGGAGTTCTGCTGACTaGAGTGTGTGGGTACATGGC +
Preference number: 4 (lower is better)
Translates to: CSRFRPRDSQAWNSGHHARSSAD*SVWVHG
Trigger: GCCATGTACCCACACACTTCAGTCAGCAGAACTCCT...GGCATGGTGGCCTGAGTTCCATGCCTGGGAGTCACGTGGTCTGAAGCGAGAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR GCA 90 bp TGTCAATCTTCCAGATGCCTCCATATCATTCTTGCTGCGAAACCGGTTAAAGCCCGCGGCCACCGCCTCTaGCTCCGCCTCCTCGTCATC +
Preference number: 4 (lower is better)
Translates to: CQSSRCLHIILAAKPVKARGHRL*LRLLVI
Trigger: GATGACGAGGAGGCGGAGGCAGAGGCGGTGGCCGCG...GGCTTTAACCGGTTTCGCAGCAAGAATGATATGGAGGCATCTGGAAGATTGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
3UTR CAA 72 bp ACTGTGGCCAACCCGAAGGGACTTCTCCACACCTGTTaGTCTCCTCCACTTCCACCTACAAGGAGGGCAGAG +
Preference number: 4 (lower is better)
Translates to: TVANPKGLLHTC*SPPLPPTRRAE
Trigger: CTCTGCCCTCCTTGTAGGTGGAAGTGGAGGAGACAAACAGGTGTGGAGAAGTCCCTTCGGGTTGGCCACAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR TCA 90 bp GAGTGCTTTCTGCAGCCTGACTGCATAGCAGGCGCTTACTTTACGGTACCGCTCAACACCCCTCCACGCTaGCCATCGACATGTATGGAG +
Preference number: 4 (lower is better)
Translates to: ECFLQPDCIAGAYFTVPLNTPPR*PSTCME
Trigger: CTCCATACATGTCGATGGTCAGCGTGGAGGGGTGTT...GAGCGGTACCGTAAAGTAAGCGCCTGCTATGCAGTCAGGCTGCAGAAAGCACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp GAGAGAGAGAGAGACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACGAGCTAGCCCTCCCTaGGAAGCAAAGCTGGCATTG +
Preference number: 4 (lower is better)
Translates to: ERERDPSPEKGATRHTAIRASPP*EAKLAL
Trigger: CAATGCCAGCTTTGCTTCTCAGGGAGGGCTAGCTCG...TATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTCTCTCTCTCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR GCA 90 bp CAGAGGGAGTGCCATAAACTTCTATTATGGGTCTCCGTCCTCCCTCAGAGACTTTCGACACCACGCTACTaGTGCTGCTACCGCCACCGC +
Preference number: 4 (lower is better)
Translates to: QRECHKLLLWVSVLPQRLSTPRY*CCYRHR
Trigger: GCGGTGGCGGTAGCAGCAGCAGTAGCGTGGTGTCGA...AAGTCTCTGAGGGAGGACGGAGACCCATAATAGAAGTTTATGGCACTCCCTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087614.11
CDS-3UTR GCA 90 bp CCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTGTCCTCCGAGTCCATaGGGCTCAGCGGCTCCCCGT +
Preference number: 4 (lower is better)
Translates to: PSPEKGATRHTAILFNSDCPPSP*GSAAPR
Trigger: ACGGGGAGCCGCTGAGCCGCATGGACTCGGAGGACA...ATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087614.11
CDS-3UTR TCA 90 bp GTCTCCGTCCTCCCTCAGAGACTTTCTGGAAGGACGCCCGCCCAATGCTTTGTTCCAACTCTGACTGGTTaGCGGGGTGTTATACACCTT +
Preference number: 4 (lower is better)
Translates to: VSVLPQRLSGRTPAQCFVPTLTG*RGVIHL
Trigger: AAGGTGTATAACACCCCGTCAACCAGTCAGAGTTGG...AACAAAGCATTGGGCGGGCGTCCTTCCAGAAAGTCTCTGAGGGAGGACGGAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp CATTTGGCTCGCTGCTCCTTCCACCCCAAGATGAACAGCGCAAGGATCACAGGAAGGAGTTCTGCTGACTaGAGTGTGTGGGTACATGGC +
Preference number: 4 (lower is better)
Translates to: HLARCSFHPKMNSARITGRSSAD*SVWVHG
Trigger: GCCATGTACCCACACACTTCAGTCAGCAGAACTCCT...TCCTGTGATCCTTGCGCTGTTCATCTTGGGGTGGAAGGAGCAGCGAGCCAAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR TCA 90 bp TGGGTCTCCGTCCTCCCTCAGAGACTTTCTGGAAGGACGCCCGCCCAATGCTTTTTTGAGGAGTTCTGCTaGCTGAAGTGTGTGGGTACA +
Preference number: 4 (lower is better)
Translates to: WVSVLPQRLSGRTPAQCFFEEFC*LKCVGT
Trigger: TGTACCCACACACTTCAGTCAGCAGAACTCCTCAAA...AAAGCATTGGGCGGGCGTCCTTCCAGAAAGTCTCTGAGGGAGGACGGAGACCCA
54% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp CTTTTTCTGAGAGAGAAGCCTTTCTGTGTTCGCCAGTTAAATTTCAACCCAACTCGGGGGACAGCGGGCTaGGGCGGGAGAGCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: LFLREKPFCVRQLNFNPTRGTAG*GGRAPP
Trigger: TGGAGGAGCTCTCCCGCCTCAGCCCGCTGTCCCCCG...AGTTGGGTTGAAATTTAACTGGCGAACACAGAAAGGCTTCTCTCTCAGAAAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CCA 90 bp TCCTCCCTCAGAGACTTTCTGGAAGGACGCCCGCCCAATGCTTTGTTCTTAGACGAGTTGAAGCATGCCTaGCACTGGTCCCAGCAACAG +
Preference number: 4 (lower is better)
Translates to: SSLRDFLEGRPPNALFLDELKHA*HWSQQQ
Trigger: CTGTTGCTGGGACCAGTGCCAGGCATGCTTCAACTC...GTCTAAGAACAAAGCATTGGGCGGGCGTCCTTCCAGAAAGTCTCTGAGGGAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR GCA 90 bp GTCTCCGTCCTCCCTCAGAGACTTTCTGGAAGGACGCCCGCCCAATGCTTTGTTAAGCAAAGCTGGCATTaGAGCCACCAACTACACACT +
Preference number: 4 (lower is better)
Translates to: VSVLPQRLSGRTPAQCFVKQSWH*SHQLHT
Trigger: AGTGTGTAGTTGGTGGCTGCAATGCCAGCTTTGCTT...AACAAAGCATTGGGCGGGCGTCCTTCCAGAAAGTCTCTGAGGGAGGACGGAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR GCA 90 bp GAGAAGCCTTTCTGTGTTCGCCAGTTAAATTTCAACCCAACTCCTCCAAGCATTCCACGCTACTGCTGCTaGTACCGCCACCGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: EKPFCVRQLNFNPTPPSIPRYCC*YRHRCC
Trigger: GCAGCAGCGGTGGCGGTAGCAGCAGCAGTAGCGTGG...AATGCTTGGAGGAGTTGGGTTGAAATTTAACTGGCGAACACAGAAAGGCTTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR GCA 90 bp CTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTACACCACGCTACTGCTaGTGCTACCGCCACCGCTGC +
Preference number: 4 (lower is better)
Translates to: LVLKREPPDTRQYSLTVITPRYC*CYRHRC
Trigger: GCAGCGGTGGCGGTAGCAGCAGCAGTAGCGTGGTGT...AATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087614.11
CDS-3UTR CCA 90 bp GAGACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACACCTGTCCATTCATCATaGCCGGGGTTGAGCGTCCAC +
Preference number: 4 (lower is better)
Translates to: ETLVLKREPPDTRQYSLTPVHSS*PGLSVH
Trigger: GTGGACGCTCAACCCCGGCCATGATGAATGGACAGG...TGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp CATTTGGCTCGCTGCTCCTTCCACCCCAAGATGAACAGCGCAAGGATCACAGGACCTGAGAAGCAAAGCTaGCATTGCAGCCACCAACTA +
Preference number: 4 (lower is better)
Translates to: HLARCSFHPKMNSARITGPEKQS*HCSHQL
Trigger: TAGTTGGTGGCTGCAATGCCAGCTTTGCTTCTCAGG...TCCTGTGATCCTTGCGCTGTTCATCTTGGGGTGGAAGGAGCAGCGAGCCAAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
3UTR CAA 72 bp GGGGTTGACTGTAATGTGCAACTTTCCCTAAGCCCATaGTCAGTGACTAAGACTGCAGGTGTCCCCGCGTGT +
Preference number: 4 (lower is better)
Translates to: GVDCNVQLSLSP*SVTKTAGVPAC
Trigger: ACACGCGGGGACACCTGCAGTCTTAGTCACTGACAATGGGCTTAGGGAAAGTTGCACATTACAGTCAACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
CDS-3UTR TCA 90 bp CAGCAGCCTCTCACAGATTATAGCTCCCTCTTAGCCTTTTCTGTTCCTCTGTCGCGCTGTAGCCAACTCTaGCTGGTTGACGGGGTGTTA +
Preference number: 4 (lower is better)
Translates to: QQPLTDYSSLLAFSVPLSRCSQL*LVDGVL
Trigger: TAACACCCCGTCAACCAGTCAGAGTTGGCTACAGCG...CGACAGAGGAACAGAAAAGGCTAAGAGGGAGCTATAATCTGTGAGAGGCTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR TCA 90 bp GTCTCCGTCCTCCCTCAGAGACTTTCTGGAAGGACGCCCGCCCAATGCTTTGTTCTGGCTAGAAACTTTTaGGGAGTTCTGCTGACTGAA +
Preference number: 4 (lower is better)
Translates to: VSVLPQRLSGRTPAQCFVLARNF*GVLLTE
Trigger: TTCAGTCAGCAGAACTCCTCAAAAGTTTCTAGCCAG...AACAAAGCATTGGGCGGGCGTCCTTCCAGAAAGTCTCTGAGGGAGGACGGAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR GCA 90 bp GAGAGAGAGAGAGACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATATGCTTGAAGCAGTCGTaGTCCCCTGTCCATTCATCA +
Preference number: 4 (lower is better)
Translates to: ERERDPSPEKGATRHTAICLKQS*SPVHSS
Trigger: TGATGAATGGACAGGGGAGCACGACTGCTTCAAGCA...TATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTCTCTCTCTCTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR GCA 90 bp TGGGTCTCCGTCCTCCCTCAGAGACTTTCTGGAAGGACGCCCGCCCAATGCTTTGGGTGTTATACACCTTaGAACCTTTCCACAAGCAAA +
Preference number: 4 (lower is better)
Translates to: WVSVLPQRLSGRTPAQCFGCYTP*NLSTSK
Trigger: TTTGCTTGTGGAAAGGTTGCAAGGTGTATAACACCC...AAAGCATTGGGCGGGCGTCCTTCCAGAAAGTCTCTGAGGGAGGACGGAGACCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp CCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATCCTGTCCATTCATCATaGCCGGGGTTGAGCGTCCAC +
Preference number: 4 (lower is better)
Translates to: PSPEKGATRHTAILFNSDPVHSS*PGLSVH
Trigger: GTGGACGCTCAACCCCGGCCATGATGAATGGACAGG...ATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp GAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTCTCAGACCCCTGTCCATTCATCATaGCCGGGGTTGAGCGTCCAC +
Preference number: 4 (lower is better)
Translates to: EKGATRHTAILFNSDSQTPVHSS*PGLSVH
Trigger: GTGGACGCTCAACCCCGGCCATGATGAATGGACAGG...GGTCTGAGAATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp GCCATAAACTTCTATTATGGGTCTCCGTCCTCCCTCAGAGACTTTCTGGAAGGAGTGGTCTGCCAGGTCTaGGCTGGAGTTGAAGCATGC +
Preference number: 4 (lower is better)
Translates to: AINFYYGSPSSLRDFLEGVVCQV*AGVEAC
Trigger: GCATGCTTCAACTCCAGCCCAGACCTGGCAGACCAC...TCCTTCCAGAAAGTCTCTGAGGGAGGACGGAGACCCATAATAGAAGTTTATGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp CCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTCTCAGGTGGTCTGCCAGGTCTaGGCTGGAGTTGAAGCATGC +
Preference number: 4 (lower is better)
Translates to: PEKGATRHTAILFNSDSQVVCQV*AGVEAC
Trigger: GCATGCTTCAACTCCAGCCCAGACCTGGCAGACCAC...CTGAGAATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp GGAGTGAGGACTCCAAGGAAGGAGTGCTTTCTGCAGCCTGACTGCATAGCAGGCTCTTTGGCCTTTGGCTaGCTAGAAACTTTTGAGGAG +
Preference number: 4 (lower is better)
Translates to: GVRTPRKECFLQPDCIAGSLAFG*LETFEE
Trigger: CTCCTCAAAAGTTTCTAGCCAGCCAAAGGCCAAAGA...GCCTGCTATGCAGTCAGGCTGCAGAAAGCACTCCTTCCTTGGAGTCCTCACTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp GGTCTCCGTCCTCCCTCAGAGACTTTCTGGAAGGACGCCCGCCCAATGCTTTGTTGTTCTGTAAATGTTTaGGTCCAACAGCAAGGCAGT +
Preference number: 4 (lower is better)
Translates to: GLRPPSETFWKDARPMLCCSVNV*VQQQGS
Trigger: ACTGCCTTGCTGTTGGACCCAAACATTTACAGAACA...ACAAAGCATTGGGCGGGCGTCCTTCCAGAAAGTCTCTGAGGGAGGACGGAGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp CTCGCTTCAGACCACGTGACTCCCAGGCATGGAACTCAGGCCACCATGCCTGTTTGTTCTGTAAATGTTTaGGTCCAACAGCAAGGCAGT +
Preference number: 4 (lower is better)
Translates to: LASDHVTPRHGTQATMPVCSVNV*VQQQGS
Trigger: ACTGCCTTGCTGTTGGACCCAAACATTTACAGAACA...AACAGGCATGGTGGCCTGAGTTCCATGCCTGGGAGTCACGTGGTCTGAAGCGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR CCA 90 bp TTTTGTTCTGTAACTTTTTCTGAGAGAGAAGCCTTTCTGTGTTCGCCAGTTAAACGCCCCGCGGTCCCTTaGGCTCCTCCAGGCCCTCCT +
Preference number: 4 (lower is better)
Translates to: FCSVTFSEREAFLCSPVKRPAVP*APPGPP
Trigger: AGGAGGGCCTGGAGGAGCCCAAGGGACCGCGGGGCG...TTTAACTGGCGAACACAGAAAGGCTTCTCTCTCAGAAAAAGTTACAGAACAAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR TCA 90 bp TTGGGGCAGAAACAACCCAGGTCCACCATAAATGTCATATACAGACAGGCAGAGAACACCCCTCCACGCTaGCCATCGACATGTATGGAG +
Preference number: 4 (lower is better)
Translates to: LGQKQPRSTINVIYRQAENTPPR*PSTCME
Trigger: CTCCATACATGTCGATGGTCAGCGTGGAGGGGTGTT...CTCTGCCTGTCTGTATATGACATTTATGGTGGACCTGGGTTGTTTCTGCCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
CDS-3UTR TCA 90 bp GCCATAAACTTCTATTATGGGTCTCCGTCCTCCCTCAGAGACTTTCTGGAAGGAAACACCCCTCCACGCTaGCCATCGACATGTATGGAG +
Preference number: 4 (lower is better)
Translates to: AINFYYGSPSSLRDFLEGNTPPR*PSTCME
Trigger: CTCCATACATGTCGATGGTCAGCGTGGAGGGGTGTT...TCCTTCCAGAAAGTCTCTGAGGGAGGACGGAGACCCATAATAGAAGTTTATGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp GAGAGAGACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTCCAACTCTGACTGGTTaGCGGGGTGTTATACACCTT +
Preference number: 4 (lower is better)
Translates to: ERDPSPEKGATRHTAILFPTLTG*RGVIHL
Trigger: AAGGTGTATAACACCCCGTCAACCAGTCAGAGTTGG...AAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTCTCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp GCCATAAACTTCTATTATGGGTCTCCGTCCTCCCTCAGAGACTTTCTGGAAGGACGCTGTAGCCAACTCTaGCTGGTTGACGGGGTGTTA +
Preference number: 4 (lower is better)
Translates to: AINFYYGSPSSLRDFLEGRCSQL*LVDGVL
Trigger: TAACACCCCGTCAACCAGTCAGAGTTGGCTACAGCG...TCCTTCCAGAAAGTCTCTGAGGGAGGACGGAGACCCATAATAGAAGTTTATGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp GAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTCTCAGACCCGCTGTAGCCAACTCTaGCTGGTTGACGGGGTGTTA +
Preference number: 4 (lower is better)
Translates to: EKGATRHTAILFNSDSQTRCSQL*LVDGVL
Trigger: TAACACCCCGTCAACCAGTCAGAGTTGGCTACAGCG...GGTCTGAGAATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp CTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTCGAGCTAGCCCTCCCTaGGAAGCAAAGCTGGCATTG +
Preference number: 4 (lower is better)
Translates to: LVLKREPPDTRQYSLTVIRASPP*EAKLAL
Trigger: CAATGCCAGCTTTGCTTCTCAGGGAGGGCTAGCTCG...AATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp GACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTAGGAGTTCTGCTGACTaGAGTGTGTGGGTACATGGC +
Preference number: 4 (lower is better)
Translates to: DPSPEKGATRHTAILFNSRSSAD*SVWVHG
Trigger: GCCATGTACCCACACACTTCAGTCAGCAGAACTCCT...ACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp GACAATTCTCCGGTCTGTTCTCGCTTCAGACCACGTGACTCCCAGGCATGGAACCCTAGACTTTCTATGTaGGCAGAGAGGTTAAAGCAG +
Preference number: 4 (lower is better)
Translates to: DNSPVCSRFRPRDSQAWNPRLSM*AERLKQ
Trigger: CTGCTTTAACCTCTCTGCTCACATAGAAAGTCTAGG...GTTCCATGCCTGGGAGTCACGTGGTCTGAAGCGAGAACAGACCGGAGAATTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR TCA 90 bp TCCGCAGTGCTTCCCCCTCGTCCCTCAGGCTCCATGACTGTTCCATGCCTACCTACTTTCGTTTTTAACTaGTGTCGTTCACTCTCATTC +
Preference number: 4 (lower is better)
Translates to: SAVLPPRPSGSMTVPCLPTFVFN*CRSLSF
Trigger: GAATGAGAGTGAACGACATCAGTTAAAAACGAAAGT...AGGTAGGCATGGAACAGTCATGGAGCCTGAGGGACGAGGGGGAAGCACTGCGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR GCA 90 bp GAGAGAGACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTTGCTTGAAGCAGTCGTaGTCCCCTGTCCATTCATCA +
Preference number: 4 (lower is better)
Translates to: ERDPSPEKGATRHTAILFCLKQS*SPVHSS
Trigger: TGATGAATGGACAGGGGAGCACGACTGCTTCAAGCA...AAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTCTCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR GCA 90 bp TGTCTCCTCCACTTCCACCTACAAGGAGGGCAGAGAGTATGCCACAGAGCACATGGCATCCAGTGTTTGTaGATCGAAGAAATCGTGTGG +
Preference number: 4 (lower is better)
Translates to: CLLHFHLQGGQRVCHRAHGIQCL*IEEIVW
Trigger: CCACACGATTTCTTCGATGCACAAACACTGGATGCC...ATGTGCTCTGTGGCATACTCTCTGCCCTCCTTGTAGGTGGAAGTGGAGGAGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR GCA 90 bp GAGAGAGAGAGAGACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATAGGCATCCAGTGTTTGTaGATCGAAGAAATCGTGTGG +
Preference number: 4 (lower is better)
Translates to: ERERDPSPEKGATRHTAIGIQCL*IEEIVW
Trigger: CCACACGATTTCTTCGATGCACAAACACTGGATGCC...TATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTCTCTCTCTCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp GAGAGAGAGAGAGACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATAGGGTTGAGCGTCCACTaGAAATTGTGCTGTCTATGT +
Preference number: 4 (lower is better)
Translates to: ERERDPSPEKGATRHTAIGLSVH*KLCCLC
Trigger: ACATAGACAGCACAATTTCCAGTGGACGCTCAACCC...TATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTCTCTCTCTCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp CTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTGTGGTCTGCCAGGTCTaGGCTGGAGTTGAAGCATGC +
Preference number: 4 (lower is better)
Translates to: LVLKREPPDTRQYSLTVIVVCQV*AGVEAC
Trigger: GCATGCTTCAACTCCAGCCCAGACCTGGCAGACCAC...AATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
3UTR CAA 72 bp AGCAGGGCCTATGGTCTGTACTGTCCAGACATGGATTaGGGGCAGAAACAACCCAGGTCCACCATAAATGTC +
Preference number: 4 (lower is better)
Translates to: SRAYGLYCPDMD*GQKQPRSTINV
Trigger: GACATTTATGGTGGACCTGGGTTGTTTCTGCCCCAAATCCATGTCTGGACAGTACAGACCATAGGCCCTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR CAA 72 bp GGATATCACTCGGGCCTTGAACTCTTGGAAATCCTCTaGCTTCGTCCTCCCAAATGCAGGGCTTTAGTCAGC +
Preference number: 4 (lower is better)
Translates to: GYHSGLELLEIL*LRPPKCRALVS
Trigger: GCTGACTAAAGCCCTGCATTTGGGAGGACGAAGCAAGAGGATTTCCAAGAGTTCAAGGCCCGAGTGATATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
3UTR CAA 72 bp TTTATTCTGTCTGTCAGTAAAGGCAGATACCATCCCTaGCTAAGCTCAACCCCCAGTGTCCCCTGCGCTGCA +
Preference number: 4 (lower is better)
Translates to: FILSVSKGRYHP*LSSTPSVPCAA
Trigger: TGCAGCGCAGGGGACACTGGGGGTTGAGCTTAGCAAGGGATGGTATCTGCCTTTACTGACAGACAGAATAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR CAA 72 bp TCGCCAGTTAAATTTCAACCCAACTCCTCCAAGCATTaGGCTCGCTGCTCCTTCCACCCCAAGATGAACAGC +
Preference number: 4 (lower is better)
Translates to: SPVKFQPNSSKH*ARCSFHPKMNS
Trigger: GCTGTTCATCTTGGGGTGGAAGGAGCAGCGAGCCAAATGCTTGGAGGAGTTGGGTTGAAATTTAACTGGCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR TCA 90 bp AAGGAGGGCAGAGAGTATGCCACAGAGCACATAACACACAGGGCACATAACACACCAACTCTGACTGGTTaGCGGGGTGTTATACACCTT +
Preference number: 4 (lower is better)
Translates to: KEGREYATEHITHRAHNTPTLTG*RGVIHL
Trigger: AAGGTGTATAACACCCCGTCAACCAGTCAGAGTTGG...TGTGTTATGTGCCCTGTGTGTTATGTGCTCTGTGGCATACTCTCTGCCCTCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR TCA 90 bp CTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTCGCTGTAGCCAACTCTaGCTGGTTGACGGGGTGTTA +
Preference number: 4 (lower is better)
Translates to: LVLKREPPDTRQYSLTVIRCSQL*LVDGVL
Trigger: TAACACCCCGTCAACCAGTCAGAGTTGGCTACAGCG...AATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp TCCTTTTTGGTTTGTTTGCCTCAGGATATCACTCGGGCCTTGAACTCTTGGAAACGAGCTAGCCCTCCCTaGGAAGCAAAGCTGGCATTG +
Preference number: 4 (lower is better)
Translates to: SFLVCLPQDITRALNSWKRASPP*EAKLAL
Trigger: CAATGCCAGCTTTGCTTCTCAGGGAGGGCTAGCTCG...TTTCCAAGAGTTCAAGGCCCGAGTGATATCCTGAGGCAAACAAACCAAAAAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR TCA 90 bp TATACTACTGTGGCCAACCCGAAGGGACTTCTCCACACCTGTTTGTCTCCTCCATTTGAGGAGTTCTGCTaGCTGAAGTGTGTGGGTACA +
Preference number: 4 (lower is better)
Translates to: YTTVANPKGLLHTCLSPPFEEFC*LKCVGT
Trigger: TGTACCCACACACTTCAGTCAGCAGAACTCCTCAAA...TGGAGGAGACAAACAGGTGTGGAGAAGTCCCTTCGGGTTGGCCACAGTAGTATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR TCA 90 bp GAGAGAGAGAGAGACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTGGCTAGAAACTTTTaGGGAGTTCTGCTGACTGAA +
Preference number: 4 (lower is better)
Translates to: ERERDPSPEKGATRHTAILARNF*GVLLTE
Trigger: TTCAGTCAGCAGAACTCCTCAAAAGTTTCTAGCCAG...TATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTCTCTCTCTCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR GCA 90 bp GAACTCTTGGAAATCCTCTTGCTTCGTCCTCCCAAATGCAGGGCTTTAGTCAGCTGCTTGAAGCAGTCGTaGTCCCCTGTCCATTCATCA +
Preference number: 4 (lower is better)
Translates to: ELLEILLLRPPKCRALVSCLKQS*SPVHSS
Trigger: TGATGAATGGACAGGGGAGCACGACTGCTTCAAGCA...GCTGACTAAAGCCCTGCATTTGGGAGGACGAAGCAAGAGGATTTCCAAGAGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
CDS-3UTR GCA 90 bp GAGAGAGACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAAGCAAAGCTGGCATTaGAGCCACCAACTACACACT +
Preference number: 4 (lower is better)
Translates to: ERDPSPEKGATRHTAILFKQSWH*SHQLHT
Trigger: AGTGTGTAGTTGGTGGCTGCAATGCCAGCTTTGCTT...AAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTCTCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR GCA 90 bp CCCAACAGTAAGGAACAGCGACTCAGCCACTGTCAGAGGGAGTGCCATAAACTTGGCATCCAGTGTTTGTaGATCGAAGAAATCGTGTGG +
Preference number: 4 (lower is better)
Translates to: PNSKEQRLSHCQRECHKLGIQCL*IEEIVW
Trigger: CCACACGATTTCTTCGATGCACAAACACTGGATGCC...AAGTTTATGGCACTCCCTCTGACAGTGGCTGAGTCGCTGTTCCTTACTGTTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR GCA 90 bp GAGAGAGACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTGGCATCCAGTGTTTGTaGATCGAAGAAATCGTGTGG +
Preference number: 4 (lower is better)
Translates to: ERDPSPEKGATRHTAILFGIQCL*IEEIVW
Trigger: CCACACGATTTCTTCGATGCACAAACACTGGATGCC...AAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTCTCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR GCA 90 bp CTTTTTCTGAGAGAGAAGCCTTTCTGTGTTCGCCAGTTAAATTTCAACCCAACTACACCACGCTACTGCTaGTGCTACCGCCACCGCTGC +
Preference number: 4 (lower is better)
Translates to: LFLREKPFCVRQLNFNPTTPRYC*CYRHRC
Trigger: GCAGCGGTGGCGGTAGCAGCAGCAGTAGCGTGGTGT...AGTTGGGTTGAAATTTAACTGGCGAACACAGAAAGGCTTCTCTCTCAGAAAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR GCA 90 bp GAGAGAGAGAGAGACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATAGTCCACTGGAAATTGTaGTGTCTATGTCCATTAGCG +
Preference number: 4 (lower is better)
Translates to: ERERDPSPEKGATRHTAIVHWKL*CLCPLA
Trigger: CGCTAATGGACATAGACAGCACAATTTCCAGTGGAC...TATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTCTCTCTCTCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087614.11
CDS-3UTR CCA 90 bp CAGCGACTCAGCCACTGTCAGAGGGAGTGCCATAAACTTCTATTATGGGTCTCCGGGTTGAGCGTCCACTaGAAATTGTGCTGTCTATGT +
Preference number: 4 (lower is better)
Translates to: QRLSHCQRECHKLLLWVSGLSVH*KLCCLC
Trigger: ACATAGACAGCACAATTTCCAGTGGACGCTCAACCC...GGAGACCCATAATAGAAGTTTATGGCACTCCCTCTGACAGTGGCTGAGTCGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp TATACTACTGTGGCCAACCCGAAGGGACTTCTCCACACCTGTTTGTCTCCTCCAGGGTTGAGCGTCCACTaGAAATTGTGCTGTCTATGT +
Preference number: 4 (lower is better)
Translates to: YTTVANPKGLLHTCLSPPGLSVH*KLCCLC
Trigger: ACATAGACAGCACAATTTCCAGTGGACGCTCAACCC...TGGAGGAGACAAACAGGTGTGGAGAAGTCCCTTCGGGTTGGCCACAGTAGTATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CCA 90 bp GAGAGAGACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTGGGTTGAGCGTCCACTaGAAATTGTGCTGTCTATGT +
Preference number: 4 (lower is better)
Translates to: ERDPSPEKGATRHTAILFGLSVH*KLCCLC
Trigger: ACATAGACAGCACAATTTCCAGTGGACGCTCAACCC...AAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTCTCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp CTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTGAGTTGAAGCATGCCTaGCACTGGTCCCAGCAACAG +
Preference number: 4 (lower is better)
Translates to: LVLKREPPDTRQYSLTVIELKHA*HWSQQQ
Trigger: CTGTTGCTGGGACCAGTGCCAGGCATGCTTCAACTC...AATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp GACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTCCTGAGAAGCAAAGCTaGCATTGCAGCCACCAACTA +
Preference number: 4 (lower is better)
Translates to: DPSPEKGATRHTAILFNSPEKQS*HCSHQL
Trigger: TAGTTGGTGGCTGCAATGCCAGCTTTGCTTCTCAGG...ACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp GAGAGAGAGAGAGACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATATGGCTCGATGTCTTATaGCATCCAGTGTTTGTGCAT +
Preference number: 4 (lower is better)
Translates to: ERERDPSPEKGATRHTAIWLDVL*HPVFVH
Trigger: ATGCACAAACACTGGATGCCATAAGACATCGAGCCA...TATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTCTCTCTCTCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
3UTR CAA 72 bp AGTTGCCCACAGCACCGTACTGACAGGACAAACACTTaGTCAGTGATTTTGTGTGGAGTACAATCCTGGCGG +
Preference number: 4 (lower is better)
Translates to: SCPQHRTDRTNT*SVILCGVQSWR
Trigger: CCGCCAGGATTGTACTCCACACAAAATCACTGACAAAGTGTTTGTCCTGTCAGTACGGTGCTGTGGGCAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR CAA 72 bp GGGGGTGTCAATCTTCCAGATGCCTCCATATCATTCTaGCTGCGAAACCGGTTAAAGCCATGCCTTAGACTG +
Preference number: 4 (lower is better)
Translates to: GGVNLPDASISF*LRNRLKPCLRL
Trigger: CAGTCTAAGGCATGGCTTTAACCGGTTTCGCAGCAAGAATGATATGGAGGCATCTGGAAGATTGACACCCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR TCA 90 bp AAGCCTTTCTGTGTTCGCCAGTTAAATTTCAACCCAACTCCTCCAAGCATTTGGAACACCCCTCCACGCTaGCCATCGACATGTATGGAG +
Preference number: 4 (lower is better)
Translates to: KPFCVRQLNFNPTPPSIWNTPPR*PSTCME
Trigger: CTCCATACATGTCGATGGTCAGCGTGGAGGGGTGTT...CCAAATGCTTGGAGGAGTTGGGTTGAAATTTAACTGGCGAACACAGAAAGGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR TCA 90 bp CTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTAGGAGTTCTGCTGACTaGAGTGTGTGGGTACATGGC +
Preference number: 4 (lower is better)
Translates to: LVLKREPPDTRQYSLTVIRSSAD*SVWVHG
Trigger: GCCATGTACCCACACACTTCAGTCAGCAGAACTCCT...AATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR GCA 90 bp GACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTAAGCAAAGCTGGCATTaGAGCCACCAACTACACACT +
Preference number: 4 (lower is better)
Translates to: DPSPEKGATRHTAILFNSKQSWH*SHQLHT
Trigger: AGTGTGTAGTTGGTGGCTGCAATGCCAGCTTTGCTT...ACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp ATAACACACAGGGCACATAACACACACAAAGCCTGCAGTTGCAGTGAAATTAAGCCTGTCCATTCATCATaGCCGGGGTTGAGCGTCCAC +
Preference number: 4 (lower is better)
Translates to: ITHRAHNTHKACSCSEIKPVHSS*PGLSVH
Trigger: GTGGACGCTCAACCCCGGCCATGATGAATGGACAGG...CTTAATTTCACTGCAACTGCAGGCTTTGTGTGTGTTATGTGCCCTGTGTGTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CCA 90 bp TATACTACTGTGGCCAACCCGAAGGGACTTCTCCACACCTGTTTGTCTCCTCCATCTTTGGCCTTTGGCTaGCTAGAAACTTTTGAGGAG +
Preference number: 4 (lower is better)
Translates to: YTTVANPKGLLHTCLSPPSLAFG*LETFEE
Trigger: CTCCTCAAAAGTTTCTAGCCAGCCAAAGGCCAAAGA...TGGAGGAGACAAACAGGTGTGGAGAAGTCCCTTCGGGTTGGCCACAGTAGTATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CCA 90 bp TGTCTCCTCCACTTCCACCTACAAGGAGGGCAGAGAGTATGCCACAGAGCACATTGTTCTGTAAATGTTTaGGTCCAACAGCAAGGCAGT +
Preference number: 4 (lower is better)
Translates to: CLLHFHLQGGQRVCHRAHCSVNV*VQQQGS
Trigger: ACTGCCTTGCTGTTGGACCCAAACATTTACAGAACA...ATGTGCTCTGTGGCATACTCTCTGCCCTCCTTGTAGGTGGAAGTGGAGGAGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR TCA 90 bp GAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTCTCAGACCTTTGAGGAGTTCTGCTaGCTGAAGTGTGTGGGTACA +
Preference number: 4 (lower is better)
Translates to: EKGATRHTAILFNSDSQTFEEFC*LKCVGT
Trigger: TGTACCCACACACTTCAGTCAGCAGAACTCCTCAAA...GGTCTGAGAATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp GAGACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACACTGGCTAGAAACTTTTaGGGAGTTCTGCTGACTGAA +
Preference number: 4 (lower is better)
Translates to: ETLVLKREPPDTRQYSLTLARNF*GVLLTE
Trigger: TTCAGTCAGCAGAACTCCTCAAAAGTTTCTAGCCAG...TGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp GACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTCCTAGACTTTCTATGTaGGCAGAGAGGTTAAAGCAG +
Preference number: 4 (lower is better)
Translates to: DPSPEKGATRHTAILFNSPRLSM*AERLKQ
Trigger: CTGCTTTAACCTCTCTGCTCACATAGAAAGTCTAGG...ACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp GAGACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACACCTAGACTTTCTATGTaGGCAGAGAGGTTAAAGCAG +
Preference number: 4 (lower is better)
Translates to: ETLVLKREPPDTRQYSLTPRLSM*AERLKQ
Trigger: CTGCTTTAACCTCTCTGCTCACATAGAAAGTCTAGG...TGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR GCA 90 bp TGTCAATCTTCCAGATGCCTCCATATCATTCTTGCTGCGAAACCGGTTAAAGCCTGCTTGAAGCAGTCGTaGTCCCCTGTCCATTCATCA +
Preference number: 4 (lower is better)
Translates to: CQSSRCLHIILAAKPVKACLKQS*SPVHSS
Trigger: TGATGAATGGACAGGGGAGCACGACTGCTTCAAGCA...GGCTTTAACCGGTTTCGCAGCAAGAATGATATGGAGGCATCTGGAAGATTGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR GCA 90 bp GAGAGAGACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTGGGTGTTATACACCTTaGAACCTTTCCACAAGCAAA +
Preference number: 4 (lower is better)
Translates to: ERDPSPEKGATRHTAILFGCYTP*NLSTSK
Trigger: TTTGCTTGTGGAAAGGTTGCAAGGTGTATAACACCC...AAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTCTCTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR GCA 90 bp CCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATGGCATCCAGTGTTTGTaGATCGAAGAAATCGTGTGG +
Preference number: 4 (lower is better)
Translates to: PSPEKGATRHTAILFNSDGIQCL*IEEIVW
Trigger: CCACACGATTTCTTCGATGCACAAACACTGGATGCC...ATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp CTTTTTCTGAGAGAGAAGCCTTTCTGTGTTCGCCAGTTAAATTTCAACCCAACTGTGGTCTGCCAGGTCTaGGCTGGAGTTGAAGCATGC +
Preference number: 4 (lower is better)
Translates to: LFLREKPFCVRQLNFNPTVVCQV*AGVEAC
Trigger: GCATGCTTCAACTCCAGCCCAGACCTGGCAGACCAC...AGTTGGGTTGAAATTTAACTGGCGAACACAGAAAGGCTTCTCTCTCAGAAAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CCA 90 bp CTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTCCTGAGAAGCAAAGCTaGCATTGCAGCCACCAACTA +
Preference number: 4 (lower is better)
Translates to: LVLKREPPDTRQYSLTVIPEKQS*HCSHQL
Trigger: TAGTTGGTGGCTGCAATGCCAGCTTTGCTTCTCAGG...AATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp AAATTTAGAGTAAAAACTGCTGGTATTGCTGTCACTGTAGGGAGTGAGGACTCCAGGAGTTCTGCTGACTaGAGTGTGTGGGTACATGGC +
Preference number: 4 (lower is better)
Translates to: KFRVKTAGIAVTVGSEDSRSSAD*SVWVHG
Trigger: GCCATGTACCCACACACTTCAGTCAGCAGAACTCCT...GGAGTCCTCACTCCCTACAGTGACAGCAATACCAGCAGTTTTTACTCTAAATTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp CTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTTTTGAGGAGTTCTGCTaGCTGAAGTGTGTGGGTACA +
Preference number: 4 (lower is better)
Translates to: LVLKREPPDTRQYSLTVIFEEFC*LKCVGT
Trigger: TGTACCCACACACTTCAGTCAGCAGAACTCCTCAAA...AATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp CCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATCTGGCTAGAAACTTTTaGGGAGTTCTGCTGACTGAA +
Preference number: 4 (lower is better)
Translates to: PSPEKGATRHTAILFNSDLARNF*GVLLTE
Trigger: TTCAGTCAGCAGAACTCCTCAAAAGTTTCTAGCCAG...ATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR GCA 90 bp CTTTCCTTTTTGGTTTGTTTGCCTCAGGATATCACTCGGGCCTTGAACTCTTGGGGCATCCAGTGTTTGTaGATCGAAGAAATCGTGTGG +
Preference number: 4 (lower is better)
Translates to: LSFLVCLPQDITRALNSWGIQCL*IEEIVW
Trigger: CCACACGATTTCTTCGATGCACAAACACTGGATGCC...CCAAGAGTTCAAGGCCCGAGTGATATCCTGAGGCAAACAAACCAAAAAGGAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR CCA 90 bp TACCTTTGCAGAAGATCATTTGCACATTTACTTGTTGGGGAAGACAATTCTCCGGAGTTGAAGCATGCCTaGCACTGGTCCCAGCAACAG +
Preference number: 4 (lower is better)
Translates to: YLCRRSFAHLLVGEDNSPELKHA*HWSQQQ
Trigger: CTGTTGCTGGGACCAGTGCCAGGCATGCTTCAACTC...CGGAGAATTGTCTTCCCCAACAAGTAAATGTGCAAATGATCTTCTGCAAAGGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
CDS-3UTR CCA 90 bp CTCAGAGACTTTCTGGAAGGACGCCCGCCCAATGCTTTGTTCTTAGACATTAACTCTTTGGCCTTTGGCTaGCTAGAAACTTTTGAGGAG +
Preference number: 4 (lower is better)
Translates to: LRDFLEGRPPNALFLDINSLAFG*LETFEE
Trigger: CTCCTCAAAAGTTTCTAGCCAGCCAAAGGCCAAAGA...GTTAATGTCTAAGAACAAAGCATTGGGCGGGCGTCCTTCCAGAAAGTCTCTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp GAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTCTCAGACCTCTTTGGCCTTTGGCTaGCTAGAAACTTTTGAGGAG +
Preference number: 4 (lower is better)
Translates to: EKGATRHTAILFNSDSQTSLAFG*LETFEE
Trigger: CTCCTCAAAAGTTTCTAGCCAGCCAAAGGCCAAAGA...GGTCTGAGAATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp TCCTCCCTCAGAGACTTTCTGGAAGGACGCCCGCCCAATGCTTTGTTCTTAGACGCAAGGCAGTATCTTTaGGTAGCTTTGATAAATGAA +
Preference number: 4 (lower is better)
Translates to: SSLRDFLEGRPPNALFLDARQYL*VALINE
Trigger: TTCATTTATCAAAGCTACCCAAAGATACTGCCTTGC...GTCTAAGAACAAAGCATTGGGCGGGCGTCCTTCCAGAAAGTCTCTGAGGGAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp GAACTCTTGGAAATCCTCTTGCTTCGTCCTCCCAAATGCAGGGCTTTAGTCAGCTGTTCTGTAAATGTTTaGGTCCAACAGCAAGGCAGT +
Preference number: 4 (lower is better)
Translates to: ELLEILLLRPPKCRALVSCSVNV*VQQQGS
Trigger: ACTGCCTTGCTGTTGGACCCAAACATTTACAGAACA...GCTGACTAAAGCCCTGCATTTGGGAGGACGAAGCAAGAGGATTTCCAAGAGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR CCA 90 bp GAGACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACATGTTCTGTAAATGTTTaGGTCCAACAGCAAGGCAGT +
Preference number: 4 (lower is better)
Translates to: ETLVLKREPPDTRQYSLTCSVNV*VQQQGS
Trigger: ACTGCCTTGCTGTTGGACCCAAACATTTACAGAACA...TGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
3UTR CAA 72 bp TCCCTTCAGTCTGCAGACATCTCTCCTAAAGGTGCTTaGTTAGCAATCCCTCTGGCAGCACTAGTGAATTAC +
Preference number: 4 (lower is better)
Translates to: SLQSADISPKGA*LAIPLAALVNY
Trigger: GTAATTCACTAGTGCTGCCAGAGGGATTGCTAACAAAGCACCTTTAGGAGAGATGTCTGCAGACTGAAGGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
3UTR CAA 72 bp CTCAGAGACTTTCTGGAAGGACGCCCGCCCAATGCTTaGTTCTTAGACATTAACAGTAGTACACAGTCCCTT +
Preference number: 4 (lower is better)
Translates to: LRDFLEGRPPNA*FLDINSSTQSL
Trigger: AAGGGACTGTGTACTACTGTTAATGTCTAAGAACAAAGCATTGGGCGGGCGTCCTTCCAGAAAGTCTCTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
3UTR CAA 72 bp TTTTTGGTTTGTTTGCCTCAGGATATCACTCGGGCCTaGAACTCTTGGAAATCCTCTTGCTTCGTCCTCCCA +
Preference number: 4 (lower is better)
Translates to: FLVCLPQDITRA*NSWKSSCFVLP
Trigger: TGGGAGGACGAAGCAAGAGGATTTCCAAGAGTTCAAGGCCCGAGTGATATCCTGAGGCAAACAAACCAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR TCA 90 bp AAATTTAGAGTAAAAACTGCTGGTATTGCTGTCACTGTAGGGAGTGAGGACTCCCCAACTCTGACTGGTTaGCGGGGTGTTATACACCTT +
Preference number: 4 (lower is better)
Translates to: KFRVKTAGIAVTVGSEDSPTLTG*RGVIHL
Trigger: AAGGTGTATAACACCCCGTCAACCAGTCAGAGTTGG...GGAGTCCTCACTCCCTACAGTGACAGCAATACCAGCAGTTTTTACTCTAAATTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp AACTCTGGCAAATTCTACCTTTGCAGAAGATCATTTGCACATTTACTTGTTGGGCGCTGTAGCCAACTCTaGCTGGTTGACGGGGTGTTA +
Preference number: 4 (lower is better)
Translates to: NSGKFYLCRRSFAHLLVGRCSQL*LVDGVL
Trigger: TAACACCCCGTCAACCAGTCAGAGTTGGCTACAGCG...CCCAACAAGTAAATGTGCAAATGATCTTCTGCAAAGGTAGAATTTGCCAGAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
CDS-3UTR TCA 90 bp ACACGGCAATACTCTTTAACAGTGATTCTCAGACCTAATTCGATAGACGAATTTCGAGCTAGCCCTCCCTaGGAAGCAAAGCTGGCATTG +
Preference number: 4 (lower is better)
Translates to: TRQYSLTVILRPNSIDEFRASPP*EAKLAL
Trigger: CAATGCCAGCTTTGCTTCTCAGGGAGGGCTAGCTCG...AAATTCGTCTATCGAATTAGGTCTGAGAATCACTGTTAAAGAGTATTGCCGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp TGTCAATCTTCCAGATGCCTCCATATCATTCTTGCTGCGAAACCGGTTAAAGCCCCTAGACTTTCTATGTaGGCAGAGAGGTTAAAGCAG +
Preference number: 4 (lower is better)
Translates to: CQSSRCLHIILAAKPVKAPRLSM*AERLKQ
Trigger: CTGCTTTAACCTCTCTGCTCACATAGAAAGTCTAGG...GGCTTTAACCGGTTTCGCAGCAAGAATGATATGGAGGCATCTGGAAGATTGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR GCA 90 bp ATATTAACACGCTGTCCCCATGAGAGAGAGAGAGAGACCCTAGTCCTGAAAAGGGGGTGTTATACACCTTaGAACCTTTCCACAAGCAAA +
Preference number: 4 (lower is better)
Translates to: ILTRCPHERERETLVLKRGCYTP*NLSTSK
Trigger: TTTGCTTGTGGAAAGGTTGCAAGGTGTATAACACCC...CCTTTTCAGGACTAGGGTCTCTCTCTCTCTCTCATGGGGACAGCGTGTTAATAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp AGTGCCATAAACTTCTATTATGGGTCTCCGTCCTCCCTCAGAGACTTTCTGGAATCTTTGGCCTTTGGCTaGCTAGAAACTTTTGAGGAG +
Preference number: 4 (lower is better)
Translates to: SAINFYYGSPSSLRDFLESLAFG*LETFEE
Trigger: CTCCTCAAAAGTTTCTAGCCAGCCAAAGGCCAAAGA...TTCCAGAAAGTCTCTGAGGGAGGACGGAGACCCATAATAGAAGTTTATGGCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp CTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTTGGCTCGATGTCTTATaGCATCCAGTGTTTGTGCAT +
Preference number: 4 (lower is better)
Translates to: LVLKREPPDTRQYSLTVIWLDVL*HPVFVH
Trigger: ATGCACAAACACTGGATGCCATAAGACATCGAGCCA...AATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp ACACGGCAATACTCTTTAACAGTGATTCTCAGACCTAATTCGATAGACGAATTTAACACCCCTCCACGCTaGCCATCGACATGTATGGAG +
Preference number: 4 (lower is better)
Translates to: TRQYSLTVILRPNSIDEFNTPPR*PSTCME
Trigger: CTCCATACATGTCGATGGTCAGCGTGGAGGGGTGTT...AAATTCGTCTATCGAATTAGGTCTGAGAATCACTGTTAAAGAGTATTGCCGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp ACATTAACAGTAGTACACAGTCCCTTCAGTCTGCAGACATCTCTCCTAAAGGTGCCTAGACTTTCTATGTaGGCAGAGAGGTTAAAGCAG +
Preference number: 4 (lower is better)
Translates to: TLTVVHSPFSLQTSLLKVPRLSM*AERLKQ
Trigger: CTGCTTTAACCTCTCTGCTCACATAGAAAGTCTAGG...CACCTTTAGGAGAGATGTCTGCAGACTGAAGGGACTGTGTACTACTGTTAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR GCA 90 bp TTGAGTACAAACTGTGTGGTCTGTGTTCACTGCTCCAAAAATGTTACCAGCTACAAGCAAAGCTGGCATTaGAGCCACCAACTACACACT +
Preference number: 4 (lower is better)
Translates to: LSTNCVVCVHCSKNVTSYKQSWH*SHQLHT
Trigger: AGTGTGTAGTTGGTGGCTGCAATGCCAGCTTTGCTT...GTAGCTGGTAACATTTTTGGAGCAGTGAACACAGACCACACAGTTTGTACTCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
CDS-3UTR GCA 90 bp ATAACACACAGGGCACATAACACACACAAAGCCTGCAGTTGCAGTGAAATTAAGAAGCAAAGCTGGCATTaGAGCCACCAACTACACACT +
Preference number: 4 (lower is better)
Translates to: ITHRAHNTHKACSCSEIKKQSWH*SHQLHT
Trigger: AGTGTGTAGTTGGTGGCTGCAATGCCAGCTTTGCTT...CTTAATTTCACTGCAACTGCAGGCTTTGTGTGTGTTATGTGCCCTGTGTGTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CCA 90 bp ACACGGCAATACTCTTTAACAGTGATTCTCAGACCTAATTCGATAGACGAATTTGAGTTGAAGCATGCCTaGCACTGGTCCCAGCAACAG +
Preference number: 4 (lower is better)
Translates to: TRQYSLTVILRPNSIDEFELKHA*HWSQQQ
Trigger: CTGTTGCTGGGACCAGTGCCAGGCATGCTTCAACTC...AAATTCGTCTATCGAATTAGGTCTGAGAATCACTGTTAAAGAGTATTGCCGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp TTTTGTTCTGTAACTTTTTCTGAGAGAGAAGCCTTTCTGTGTTCGCCAGTTAAAGAGTTGAAGCATGCCTaGCACTGGTCCCAGCAACAG +
Preference number: 4 (lower is better)
Translates to: FCSVTFSEREAFLCSPVKELKHA*HWSQQQ
Trigger: CTGTTGCTGGGACCAGTGCCAGGCATGCTTCAACTC...TTTAACTGGCGAACACAGAAAGGCTTCTCTCTCAGAAAAAGTTACAGAACAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CCA 90 bp CTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTTGTTCTGTAAATGTTTaGGTCCAACAGCAAGGCAGT +
Preference number: 4 (lower is better)
Translates to: LVLKREPPDTRQYSLTVICSVNV*VQQQGS
Trigger: ACTGCCTTGCTGTTGGACCCAAACATTTACAGAACA...AATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
3UTR CAA 72 bp ACCACATATGTTTATGTATCTCTGCAACCTGAGGTCTaGTCAGACACATCACTGTGTCAGGCTTTCTACTCG +
Preference number: 4 (lower is better)
Translates to: TTYVYVSLQPEV*SDTSLCQAFYS
Trigger: CGAGTAGAAAGCCTGACACAGTGATGTGTCTGACAAGACCTCAGGTTGCAGAGATACATAAACATATGTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
CDS-3UTR TCA 90 bp ATAACACACAGGGCACATAACACACACAAAGCCTGCAGTTGCAGTGAAATTAAGCTGGCTAGAAACTTTTaGGGAGTTCTGCTGACTGAA +
Preference number: 4 (lower is better)
Translates to: ITHRAHNTHKACSCSEIKLARNF*GVLLTE
Trigger: TTCAGTCAGCAGAACTCCTCAAAAGTTTCTAGCCAG...CTTAATTTCACTGCAACTGCAGGCTTTGTGTGTGTTATGTGCCCTGTGTGTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR TCA 90 bp ATATTAACACGCTGTCCCCATGAGAGAGAGAGAGAGACCCTAGTCCTGAAAAGGACTTTCGTTTTTAACTaGTGTCGTTCACTCTCATTC +
Preference number: 4 (lower is better)
Translates to: ILTRCPHERERETLVLKRTFVFN*CRSLSF
Trigger: GAATGAGAGTGAACGACATCAGTTAAAAACGAAAGT...CCTTTTCAGGACTAGGGTCTCTCTCTCTCTCTCATGGGGACAGCGTGTTAATAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp AACTCTGGCAAATTCTACCTTTGCAGAAGATCATTTGCACATTTACTTGTTGGGCCTGAGAAGCAAAGCTaGCATTGCAGCCACCAACTA +
Preference number: 4 (lower is better)
Translates to: NSGKFYLCRRSFAHLLVGPEKQS*HCSHQL
Trigger: TAGTTGGTGGCTGCAATGCCAGCTTTGCTTCTCAGG...CCCAACAAGTAAATGTGCAAATGATCTTCTGCAAAGGTAGAATTTGCCAGAGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR CCA 90 bp AAATTTAGAGTAAAAACTGCTGGTATTGCTGTCACTGTAGGGAGTGAGGACTCCTGGCTCGATGTCTTATaGCATCCAGTGTTTGTGCAT +
Preference number: 4 (lower is better)
Translates to: KFRVKTAGIAVTVGSEDSWLDVL*HPVFVH
Trigger: ATGCACAAACACTGGATGCCATAAGACATCGAGCCA...GGAGTCCTCACTCCCTACAGTGACAGCAATACCAGCAGTTTTTACTCTAAATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CCA 90 bp ATAACACACAGGGCACATAACACACACAAAGCCTGCAGTTGCAGTGAAATTAAGTGGCTCGATGTCTTATaGCATCCAGTGTTTGTGCAT +
Preference number: 4 (lower is better)
Translates to: ITHRAHNTHKACSCSEIKWLDVL*HPVFVH
Trigger: ATGCACAAACACTGGATGCCATAAGACATCGAGCCA...CTTAATTTCACTGCAACTGCAGGCTTTGTGTGTGTTATGTGCCCTGTGTGTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
3UTR CAA 72 bp TCTACCTTTGCAGAAGATCATTTGCACATTTACTTGTaGGGGAAGACAATTCTCCGGTCTGTTCTCGCTTCA +
Preference number: 4 (lower is better)
Translates to: STFAEDHLHIYL*GKTILRSVLAS
Trigger: TGAAGCGAGAACAGACCGGAGAATTGTCTTCCCCAACAAGTAAATGTGCAAATGATCTTCTGCAAAGGTAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR TCA 90 bp AACTCTGGCAAATTCTACCTTTGCAGAAGATCATTTGCACATTTACTTGTTGGGTTTGAGGAGTTCTGCTaGCTGAAGTGTGTGGGTACA +
Preference number: 4 (lower is better)
Translates to: NSGKFYLCRRSFAHLLVGFEEFC*LKCVGT
Trigger: TGTACCCACACACTTCAGTCAGCAGAACTCCTCAAA...CCCAACAAGTAAATGTGCAAATGATCTTCTGCAAAGGTAGAATTTGCCAGAGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR TCA 90 bp GGCAAATTCTACCTTTGCAGAAGATCATTTGCACATTTACTTGTTGGGGAAGACCCTAGACTTTCTATGTaGGCAGAGAGGTTAAAGCAG +
Preference number: 4 (lower is better)
Translates to: GKFYLCRRSFAHLLVGEDPRLSM*AERLKQ
Trigger: CTGCTTTAACCTCTCTGCTCACATAGAAAGTCTAGG...GTCTTCCCCAACAAGTAAATGTGCAAATGATCTTCTGCAAAGGTAGAATTTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR TCA 90 bp CTTTCCTTTTTGGTTTGTTTGCCTCAGGATATCACTCGGGCCTTGAACTCTTGGACTTTCGTTTTTAACTaGTGTCGTTCACTCTCATTC +
Preference number: 4 (lower is better)
Translates to: LSFLVCLPQDITRALNSWTFVFN*CRSLSF
Trigger: GAATGAGAGTGAACGACATCAGTTAAAAACGAAAGT...CCAAGAGTTCAAGGCCCGAGTGATATCCTGAGGCAAACAAACCAAAAAGGAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR CCA 90 bp GTTAACCATGCATCAAGAAAACAGTTCAACGCAAACAACAGATCATCCATGTTTCCTGAGAAGCAAAGCTaGCATTGCAGCCACCAACTA +
Preference number: 4 (lower is better)
Translates to: VNHASRKQFNANNRSSMFPEKQS*HCSHQL
Trigger: TAGTTGGTGGCTGCAATGCCAGCTTTGCTTCTCAGG...AAACATGGATGATCTGTTGTTTGCGTTGAACTGTTTTCTTGATGCATGGTTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR CCA 90 bp CTCTGGCAAATTCTACCTTTGCAGAAGATCATTTGCACATTTACTTGTTGGGGATCTTTGGCCTTTGGCTaGCTAGAAACTTTTGAGGAG +
Preference number: 4 (lower is better)
Translates to: LWQILPLQKIICTFTCWGSLAFG*LETFEE
Trigger: CTCCTCAAAAGTTTCTAGCCAGCCAAAGGCCAAAGA...TCCCCAACAAGTAAATGTGCAAATGATCTTCTGCAAAGGTAGAATTTGCCAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR CCA 90 bp TGTAATGTGCAACTTTCCCTAAGCCCATTGTCAGTGACTAAGACTGCAGGTGTCGCAAGGCAGTATCTTTaGGTAGCTTTGATAAATGAA +
Preference number: 4 (lower is better)
Translates to: CNVQLSLSPLSVTKTAGVARQYL*VALINE
Trigger: TTCATTTATCAAAGCTACCCAAAGATACTGCCTTGC...GACACCTGCAGTCTTAGTCACTGACAATGGGCTTAGGGAAAGTTGCACATTACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
CDS-3UTR CCA 90 bp CTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTGCAAGGCAGTATCTTTaGGTAGCTTTGATAAATGAA +
Preference number: 4 (lower is better)
Translates to: LVLKREPPDTRQYSLTVIARQYL*VALINE
Trigger: TTCATTTATCAAAGCTACCCAAAGATACTGCCTTGC...AATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
3UTR CAA 72 bp GGCACGCAGAGGCTAATCAACAACCAGCAGCATGGTTaGACATCACAAATTTTCTACATTGACAGTAATGAA +
Preference number: 4 (lower is better)
Translates to: GTQRLINNQQHG*TSQIFYIDSNE
Trigger: TTCATTACTGTCAATGTAGAAAATTTGTGATGTCAAACCATGCTGCTGGTTGTTGATTAGCCTCTGCGTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
3UTR CAA 72 bp AATTCTACCTTTGCAGAAGATCATTTGCACATTTACTaGTTGGGGAAGACAATTCTCCGGTCTGTTCTCGCT +
Preference number: 4 (lower is better)
Translates to: NSTFAEDHLHIY*LGKTILRSVLA
Trigger: AGCGAGAACAGACCGGAGAATTGTCTTCCCCAACAAGTAAATGTGCAAATGATCTTCTGCAAAGGTAGAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR TCA 90 bp ACACTGCTTCAACCACATTTACCCACTTTGATATTCAGTCAATATTATCTCATCCCAACTCTGACTGGTTaGCGGGGTGTTATACACCTT +
Preference number: 4 (lower is better)
Translates to: TLLQPHLPTLIFSQYYLIPTLTG*RGVIHL
Trigger: AAGGTGTATAACACCCCGTCAACCAGTCAGAGTTGG...GATGAGATAATATTGACTGAATATCAAAGTGGGTAAATGTGGTTGAAGCAGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
CDS-3UTR TCA 90 bp GTTCAACGCAAACAACAGATCATCCATGTTTTTAACTCTGGCAAATTCTACCTTTTTGAGGAGTTCTGCTaGCTGAAGTGTGTGGGTACA +
Preference number: 4 (lower is better)
Translates to: VQRKQQIIHVFNSGKFYLFEEFC*LKCVGT
Trigger: TGTACCCACACACTTCAGTCAGCAGAACTCCTCAAA...AAGGTAGAATTTGCCAGAGTTAAAAACATGGATGATCTGTTGTTTGCGTTGAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR GCA 90 bp TACCTTTGCAGAAGATCATTTGCACATTTACTTGTTGGGGAAGACAATTCTCCGGGGTGTTATACACCTTaGAACCTTTCCACAAGCAAA +
Preference number: 4 (lower is better)
Translates to: YLCRRSFAHLLVGEDNSPGCYTP*NLSTSK
Trigger: TTTGCTTGTGGAAAGGTTGCAAGGTGTATAACACCC...CGGAGAATTGTCTTCCCCAACAAGTAAATGTGCAAATGATCTTCTGCAAAGGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
CDS-3UTR GCA 90 bp CTTTTTCTGAGAGAGAAGCCTTTCTGTGTTCGCCAGTTAAATTTCAACCCAACTGGGTGTTATACACCTTaGAACCTTTCCACAAGCAAA +
Preference number: 4 (lower is better)
Translates to: LFLREKPFCVRQLNFNPTGCYTP*NLSTSK
Trigger: TTTGCTTGTGGAAAGGTTGCAAGGTGTATAACACCC...AGTTGGGTTGAAATTTAACTGGCGAACACAGAAAGGCTTCTCTCTCAGAAAAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CCA 90 bp TCAGGACTTCAAATCAATACACACTGTCAAGATGGTTATCTTACAGTGCTTTTGGGGTTGAGCGTCCACTaGAAATTGTGCTGTCTATGT +
Preference number: 4 (lower is better)
Translates to: SGLQINTHCQDGYLTVLLGLSVH*KLCCLC
Trigger: ACATAGACAGCACAATTTCCAGTGGACGCTCAACCC...CAAAAGCACTGTAAGATAACCATCTTGACAGTGTGTATTGATTTGAAGTCCTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
CDS-3UTR CCA 90 bp GAGAAGCCTTTCTGTGTTCGCCAGTTAAATTTCAACCCAACTCCTCCAAGCATTGCAAGGCAGTATCTTTaGGTAGCTTTGATAAATGAA +
Preference number: 4 (lower is better)
Translates to: EKPFCVRQLNFNPTPPSIARQYL*VALINE
Trigger: TTCATTTATCAAAGCTACCCAAAGATACTGCCTTGC...AATGCTTGGAGGAGTTGGGTTGAAATTTAACTGGCGAACACAGAAAGGCTTCTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR TCA 90 bp GTTCAACGCAAACAACAGATCATCCATGTTTTTAACTCTGGCAAATTCTACCTTCTGGCTAGAAACTTTTaGGGAGTTCTGCTGACTGAA +
Preference number: 4 (lower is better)
Translates to: VQRKQQIIHVFNSGKFYLLARNF*GVLLTE
Trigger: TTCAGTCAGCAGAACTCCTCAAAAGTTTCTAGCCAG...AAGGTAGAATTTGCCAGAGTTAAAAACATGGATGATCTGTTGTTTGCGTTGAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR GCA 90 bp GCTTCAACCACATTTACCCACTTTGATATTCAGTCAATATTATCTCATCTCTTGAAGCAAAGCTGGCATTaGAGCCACCAACTACACACT +
Preference number: 4 (lower is better)
Translates to: ASTTFTHFDIQSILSHLLKQSWH*SHQLHT
Trigger: AGTGTGTAGTTGGTGGCTGCAATGCCAGCTTTGCTT...CAAGAGATGAGATAATATTGACTGAATATCAAAGTGGGTAAATGTGGTTGAAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR GCA 90 bp TTTTGTTCTGTAACTTTTTCTGAGAGAGAAGCCTTTCTGTGTTCGCCAGTTAAAGTCCACTGGAAATTGTaGTGTCTATGTCCATTAGCG +
Preference number: 4 (lower is better)
Translates to: FCSVTFSEREAFLCSPVKVHWKL*CLCPLA
Trigger: CGCTAATGGACATAGACAGCACAATTTCCAGTGGAC...TTTAACTGGCGAACACAGAAAGGCTTCTCTCTCAGAAAAAGTTACAGAACAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CCA 90 bp TCATCTCTTGTTAACCATGCATCAAGAAAACAGTTCAACGCAAACAACAGATCATGGCTCGATGTCTTATaGCATCCAGTGTTTGTGCAT +
Preference number: 4 (lower is better)
Translates to: SSLVNHASRKQFNANNRSWLDVL*HPVFVH
Trigger: ATGCACAAACACTGGATGCCATAAGACATCGAGCCA...TGATCTGTTGTTTGCGTTGAACTGTTTTCTTGATGCATGGTTAACAAGAGATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR CCA 90 bp GGCAAATTCTACCTTTGCAGAAGATCATTTGCACATTTACTTGTTGGGGAAGACGCAAGGCAGTATCTTTaGGTAGCTTTGATAAATGAA +
Preference number: 4 (lower is better)
Translates to: GKFYLCRRSFAHLLVGEDARQYL*VALINE
Trigger: TTCATTTATCAAAGCTACCCAAAGATACTGCCTTGC...GTCTTCCCCAACAAGTAAATGTGCAAATGATCTTCTGCAAAGGTAGAATTTGCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR TCA 90 bp TTTTGTTCTGTAACTTTTTCTGAGAGAGAAGCCTTTCTGTGTTCGCCAGTTAAAACTTTCGTTTTTAACTaGTGTCGTTCACTCTCATTC +
Preference number: 4 (lower is better)
Translates to: FCSVTFSEREAFLCSPVKTFVFN*CRSLSF
Trigger: GAATGAGAGTGAACGACATCAGTTAAAAACGAAAGT...TTTAACTGGCGAACACAGAAAGGCTTCTCTCTCAGAAAAAGTTACAGAACAAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR TCA 90 bp ACACGGCAATACTCTTTAACAGTGATTCTCAGACCTAATTCGATAGACGAATTTACTTTCGTTTTTAACTaGTGTCGTTCACTCTCATTC +
Preference number: 4 (lower is better)
Translates to: TRQYSLTVILRPNSIDEFTFVFN*CRSLSF
Trigger: GAATGAGAGTGAACGACATCAGTTAAAAACGAAAGT...AAATTCGTCTATCGAATTAGGTCTGAGAATCACTGTTAAAGAGTATTGCCGTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR TCA 90 bp AGTAAAGCTGTTACTCAAACTATTTACACTGCTTCAACCACATTTACCCACTTTACTTTCGTTTTTAACTaGTGTCGTTCACTCTCATTC +
Preference number: 4 (lower is better)
Translates to: SKAVTQTIYTASTTFTHFTFVFN*CRSLSF
Trigger: GAATGAGAGTGAACGACATCAGTTAAAAACGAAAGT...AAAGTGGGTAAATGTGGTTGAAGCAGTGTAAATAGTTTGAGTAACAGCTTTACT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR CCA 90 bp AATACTCAAGCAAGGTCTACAATCATCGGTCAATTAATGACTTACAAGAACATGGCAAGGCAGTATCTTTaGGTAGCTTTGATAAATGAA +
Preference number: 4 (lower is better)
Translates to: NTQARSTIIGQLMTYKNMARQYL*VALINE
Trigger: TTCATTTATCAAAGCTACCCAAAGATACTGCCTTGC...CATGTTCTTGTAAGTCATTAATTGACCGATGATTGTAGACCTTGCTTGAGTATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
3UTR CAA 72 bp AATACACACTGTCAAGATGGTTATCTTACAGTGCTTTaGGTGTTTTTAAGGGCAATTGTTTGTCTCTCCAAT +
Preference number: 4 (lower is better)
Translates to: NTHCQDGYLTVL*VFLRAIVCLSN
Trigger: ATTGGAGAGACAAACAATTGCCCTTAAAAACACCAAAAGCACTGTAAGATAACCATCTTGACAGTGTGTATT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
CDS GCA 90 bp CCCCGGTGCCGTAGCCCTCGTCGCCGCCGCTCGACACCACGCTACTaGTGCTGCTACCGCCACCGCTGCTGCCCGGGCCGCCCGGGCCGC +
Preference number: 5 (lower is better)
Translates to: PRCRSPRRRRSTPRY*CCYRHRCCPGRPGR
Trigger: GCGGCCCGGGCGGCCCGGGCAGCAGCGGTGGCGGTAGCAGCAGCAGTAGCGTGGTGTCGAGCGGCGGCGACGAGGGCTACGGCACCGGGG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087614.11
ENSMUST00000095350.11
CDS CCA 90 bp CCTCGTCGTCCTCCTCGTCCTCGTCCTCGTCCCCGCCCGCCTGGCTaGCGCTCTCGGGGCTCGGCTCCGACATGGTCTCCGCCTCGCCGC +
Preference number: 5 (lower is better)
Translates to: PRRPPRPRPRPRPPG*RSRGSAPTWSPPRR
Trigger: GCGGCGAGGCGGAGACCATGTCGGAGCCGAGCCCCGAGAGCGCCAGCCAGGCGGGCGGGGACGAGGACGAGGACGAGGAGGACGACGAGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087614.11
ENSMUST00000095350.11
CDS GCA 90 bp CCAGGCTCTCGGCGCTGCTCTCCTCCTCCGCGCCGCCGCTGCTGCTaGCCTCGTCCTCGTCGTCCTCCTCGTCCTCGTCCTCGTCCCCGC +
Preference number: 5 (lower is better)
Translates to: PGSRRCSPPPRRRCC*PRPRRPPRPRPRPR
Trigger: GCGGGGACGAGGACGAGGACGAGGAGGACGACGAGGACGAGGGCAGCAGCAGCGGCGGCGCGGAGGAGGAGAGCAGCGCCGAGAGCCTGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087614.11
ENSMUST00000095350.11
CDS GCA 90 bp CCACCAGGCTCTCGGCGCTGCTCTCCTCCTCCGCGCCGCCGCTGCTaGTGCCCTCGTCCTCGTCGTCCTCCTCGTCCTCGTCCTCGTCCC +
Preference number: 5 (lower is better)
Translates to: PPGSRRCSPPPRRRC*CPRPRRPPRPRPRP
Trigger: GGGACGAGGACGAGGACGAGGAGGACGACGAGGACGAGGGCAGCAGCAGCGGCGGCGCGGAGGAGGAGAGCAGCGCCGAGAGCCTGGTGG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087614.11
ENSMUST00000095350.11
CDS CCA 90 bp TCGTCCTCGTCGTCCTCCTCGTCCTCGTCCTCGTCCCCGCCCGCCTaGCTGGCGCTCTCGGGGCTCGGCTCCGACATGGTCTCCGCCTCG +
Preference number: 5 (lower is better)
Translates to: SSSSSSSSSSSSPPA*LALSGLGSDMVSAS
Trigger: CGAGGCGGAGACCATGTCGGAGCCGAGCCCCGAGAGCGCCAGCCAGGCGGGCGGGGACGAGGACGAGGACGAGGAGGACGACGAGGACGA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087614.11
ENSMUST00000095350.11
CDS GCA 90 bp TGCCCACCAGGCTCTCGGCGCTGCTCTCCTCCTCCGCGCCGCCGCTaGTGCTGCCCTCGTCCTCGTCGTCCTCCTCGTCCTCGTCCTCGT +
Preference number: 5 (lower is better)
Translates to: CPPGSRRCSPPPRRR*CCPRPRRPPRPRPR
Trigger: ACGAGGACGAGGACGAGGAGGACGACGAGGACGAGGGCAGCAGCAGCGGCGGCGCGGAGGAGGAGAGCAGCGCCGAGAGCCTGGTGGGCA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087614.11
ENSMUST00000095350.11
CDS GCA 90 bp CACCCCTCCACGCTGACCATCGACATGTATGGAGCGAATGTGGTCTaGCAGGTCTGGGCTGGAGTTGAAGCATGCCTGGCACTGGTCCCA +
Preference number: 5 (lower is better)
Translates to: HPSTLTIDMYGANVV*QVWAGVEACLALVP
Trigger: TGGGACCAGTGCCAGGCATGCTTCAACTCCAGCCCAGACCTGGCAGACCACATTCGCTCCATACATGTCGATGGTCAGCGTGGAGGGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS CCA 90 bp ACGCTGACCATCGACATGTATGGAGCGAATGTGGTCTGCCAGGTCTaGGCTGGAGTTGAAGCATGCCTGGCACTGGTCCCAGCAACAGTT +
Preference number: 5 (lower is better)
Translates to: TLTIDMYGANVVCQV*AGVEACLALVPATV
Trigger: AACTGTTGCTGGGACCAGTGCCAGGCATGCTTCAACTCCAGCCCAGACCTGGCAGACCACATTCGCTCCATACATGTCGATGGTCAGCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp CTCGCTTCAGACCACGTGACTCCCAGGCATGGAACTCAGGCCACCATGCCTGTTGCCAACTCTGACTGGTaGACGGGGTGTTATACACCT +
Preference number: 5 (lower is better)
Translates to: LASDHVTPRHGTQATMPVANSDW*TGCYTP
Trigger: AGGTGTATAACACCCCGTCAACCAGTCAGAGTTGGC...AACAGGCATGGTGGCCTGAGTTCCATGCCTGGGAGTCACGTGGTCTGAAGCGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
CDS GCA 90 bp GGTCCCAGCAACAGTTATAGGCAATGTGTTTGCTTGAAGCAGTCGTaGTCCCCTGTCCATTCATCATGGCCGGGGTTGAGCGTCCACTGG +
Preference number: 5 (lower is better)
Translates to: GPSNSYRQCVCLKQS*SPVHSSWPGLSVHW
Trigger: CCAGTGGACGCTCAACCCCGGCCATGATGAATGGACAGGGGAGCACGACTGCTTCAAGCAAACACATTGCCTATAACTGTTGCTGGGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS GCA 90 bp AGCATGCCTGGCACTGGTCCCAGCAACAGTTATAGGCAATGTGTTTaGTTGAAGCAGTCGTGCTCCCCTGTCCATTCATCATGGCCGGGG +
Preference number: 5 (lower is better)
Translates to: SMPGTGPSNSYRQCV*LKQSCSPVHSSWPG
Trigger: CCCCGGCCATGATGAATGGACAGGGGAGCACGACTGCTTCAAGCAAACACATTGCCTATAACTGTTGCTGGGACCAGTGCCAGGCATGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS GCA 90 bp GCCGCTGTAGCCAACTCTGACTGGTTGACGGGGTGTTATACACCTTaGAACCTTTCCACAAGCAAACGAACACCCCTCCACGCTGACCAT +
Preference number: 5 (lower is better)
Translates to: AAVANSDWLTGCYTP*NLSTSKRTPLHADH
Trigger: ATGGTCAGCGTGGAGGGGTGTTCGTTTGCTTGTGGAAAGGTTGCAAGGTGTATAACACCCCGTCAACCAGTCAGAGTTGGCTACAGCGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp CAACCCAACTCCTCCAAGCATTTGGCTCGCTGCTCCTTCCACCCCAAGATGAACAGGCAATGTGTTTGCTaGAAGCAGTCGTGCTCCCCT +
Preference number: 5 (lower is better)
Translates to: QPNSSKHLARCSFHPKMNRQCVC*KQSCSP
Trigger: AGGGGAGCACGACTGCTTCAAGCAAACACATTGCCT...GTTCATCTTGGGGTGGAAGGAGCAGCGAGCCAAATGCTTGGAGGAGTTGGGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CAA 90 bp GAGTGCTTTCTGCAGCCTGACTGCATAGCAGGCGCTTACTTTACGGTACCGCTCAGGCAATGTGTTTGCTaGAAGCAGTCGTGCTCCCCT +
Preference number: 5 (lower is better)
Translates to: ECFLQPDCIAGAYFTVPLRQCVC*KQSCSP
Trigger: AGGGGAGCACGACTGCTTCAAGCAAACACATTGCCT...GAGCGGTACCGTAAAGTAAGCGCCTGCTATGCAGTCAGGCTGCAGAAAGCACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS GCA 90 bp TATGGAGCGAATGTGGTCTGCCAGGTCTGGGCTGGAGTTGAAGCATaGCTGGCACTGGTCCCAGCAACAGTTATAGGCAATGTGTTTGCT +
Preference number: 5 (lower is better)
Translates to: YGANVVCQVWAGVEA*LALVPATVIGNVFA
Trigger: AGCAAACACATTGCCTATAACTGTTGCTGGGACCAGTGCCAGGCATGCTTCAACTCCAGCCCAGACCTGGCAGACCACATTCGCTCCATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp CAGCGACTCAGCCACTGTCAGAGGGAGTGCCATAAACTTCTATTATGGGTCTCCTCATCATGGCCGGGGTaGAGCGTCCACTGGAAATTG +
Preference number: 5 (lower is better)
Translates to: QRLSHCQRECHKLLLWVSSSWPG*SVHWKL
Trigger: CAATTTCCAGTGGACGCTCAACCCCGGCCATGATGA...GGAGACCCATAATAGAAGTTTATGGCACTCCCTCTGACAGTGGCTGAGTCGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp TGTTCTCGCTTCAGACCACGTGACTCCCAGGCATGGAACTCAGGCCACCATGCCTTGTTCTGTAAATGTTaGGGTCCAACAGCAAGGCAG +
Preference number: 5 (lower is better)
Translates to: CSRFRPRDSQAWNSGHHALFCKC*GPTARQ
Trigger: CTGCCTTGCTGTTGGACCCAAACATTTACAGAACAA...GGCATGGTGGCCTGAGTTCCATGCCTGGGAGTCACGTGGTCTGAAGCGAGAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS GCA 90 bp CCTGTCCATTCATCATGGCCGGGGTTGAGCGTCCACTGGAAATTGTaGTGTCTATGTCCATTAGCGTACTGCTTATGCTGTCCTCCGAGT +
Preference number: 5 (lower is better)
Translates to: PVHSSWPGLSVHWKL*CLCPLAYCLCCPPS
Trigger: ACTCGGAGGACAGCATAAGCAGTACGCTAATGGACATAGACAGCACAATTTCCAGTGGACGCTCAACCCCGGCCATGATGAATGGACAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087614.11
ENSMUST00000095350.11
CDS CCA 90 bp CAATGTGTTTGCTTGAAGCAGTCGTGCTCCCCTGTCCATTCATCATaGCCGGGGTTGAGCGTCCACTGGAAATTGTGCTGTCTATGTCCA +
Preference number: 5 (lower is better)
Translates to: QCVCLKQSCSPVHSS*PGLSVHWKLCCLCP
Trigger: TGGACATAGACAGCACAATTTCCAGTGGACGCTCAACCCCGGCCATGATGAATGGACAGGGGAGCACGACTGCTTCAAGCAAACACATTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS CCA 90 bp TCGTGCTCCCCTGTCCATTCATCATGGCCGGGGTTGAGCGTCCACTaGAAATTGTGCTGTCTATGTCCATTAGCGTACTGCTTATGCTGT +
Preference number: 5 (lower is better)
Translates to: SCSPVHSSWPGLSVH*KLCCLCPLAYCLCC
Trigger: ACAGCATAAGCAGTACGCTAATGGACATAGACAGCACAATTTCCAGTGGACGCTCAACCCCGGCCATGATGAATGGACAGGGGAGCACGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087614.11
ENSMUST00000095350.11
CDS-3UTR CAA 90 bp GACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTTCATCATGGCCGGGGTaGAGCGTCCACTGGAAATTG +
Preference number: 5 (lower is better)
Translates to: DPSPEKGATRHTAILFNSSSWPG*SVHWKL
Trigger: CAATTTCCAGTGGACGCTCAACCCCGGCCATGATGA...ACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp CAGCGACTCAGCCACTGTCAGAGGGAGTGCCATAAACTTCTATTATGGGTCTCCGCCAACTCTGACTGGTaGACGGGGTGTTATACACCT +
Preference number: 5 (lower is better)
Translates to: QRLSHCQRECHKLLLWVSANSDW*TGCYTP
Trigger: AGGTGTATAACACCCCGTCAACCAGTCAGAGTTGGC...GGAGACCCATAATAGAAGTTTATGGCACTCCCTCTGACAGTGGCTGAGTCGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp CATTTGGCTCGCTGCTCCTTCCACCCCAAGATGAACAGCGCAAGGATCACAGGAGAAGGAGATTCTTCTTaGGCCTTTGGCTGGCTAGAA +
Preference number: 5 (lower is better)
Translates to: HLARCSFHPKMNSARITGEGDSS*AFGWLE
Trigger: TTCTAGCCAGCCAAAGGCCAAAGAAGAATCTCCTTC...TCCTGTGATCCTTGCGCTGTTCATCTTGGGGTGGAAGGAGCAGCGAGCCAAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CAA 90 bp GAAATCCTCTTGCTTCGTCCTCCCAAATGCAGGGCTTTAGTCAGCACACCCGGCGAAGGAGATTCTTCTTaGGCCTTTGGCTGGCTAGAA +
Preference number: 5 (lower is better)
Translates to: EILLLRPPKCRALVSTPGEGDSS*AFGWLE
Trigger: TTCTAGCCAGCCAAAGGCCAAAGAAGAATCTCCTTC...GCCGGGTGTGCTGACTAAAGCCCTGCATTTGGGAGGACGAAGCAAGAGGATTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR CAA 90 bp ACAGGTGAGGTAACCCAAGACCTTAGGGCAATAGCAGCCAGGAGACACCTGTGGAATGAGCGCCGTCTTTaGTTCTTTAGTTTCCTCCGC +
Preference number: 5 (lower is better)
Translates to: TGEVTQDLRAIAARRHLWNERRL*FFSFLR
Trigger: GCGGAGGAAACTAAAGAACAAAAGACGGCGCTCATT...CCACAGGTGTCTCCTGGCTGCTATTGCCCTAAGGTCTTGGGTTACCTCACCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CAA 90 bp GGAGTGAGGACTCCAAGGAAGGAGTGCTTTCTGCAGCCTGACTGCATAGCAGGCACCTCTTCTGCGGCATaGTTCTGTAAATGTTTGGGT +
Preference number: 5 (lower is better)
Translates to: GVRTPRKECFLQPDCIAGTSSAA*FCKCLG
Trigger: ACCCAAACATTTACAGAACAATGCCGCAGAAGAGGT...GCCTGCTATGCAGTCAGGCTGCAGAAAGCACTCCTTCCTTGGAGTCCTCACTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp ATGGAACTCAGGCCACCATGCCTGTTGCCCAACACCTTCATCGAGAGCCACCTCACCTCTTCTGCGGCATaGTTCTGTAAATGTTTGGGT +
Preference number: 5 (lower is better)
Translates to: MELRPPCLLPNTFIESHLTSSAA*FCKCLG
Trigger: ACCCAAACATTTACAGAACAATGCCGCAGAAGAGGT...GAGGTGGCTCTCGATGAAGGTGTTGGGCAACAGGCATGGTGGCCTGAGTTCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR CAA 90 bp ATATTAACACGCTGTCCCCATGAGAGAGAGAGAGAGACCCTAGTCCTGAAAAGGTCATCATGGCCGGGGTaGAGCGTCCACTGGAAATTG +
Preference number: 5 (lower is better)
Translates to: ILTRCPHERERETLVLKRSSWPG*SVHWKL
Trigger: CAATTTCCAGTGGACGCTCAACCCCGGCCATGATGA...CCTTTTCAGGACTAGGGTCTCTCTCTCTCTCTCATGGGGACAGCGTGTTAATAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp AGGCAGGAAAAGACAAGCAACAGCTCTGAAAATGAGAGCAGGGCCTATGGTCTGAGGCAATGTGTTTGCTaGAAGCAGTCGTGCTCCCCT +
Preference number: 5 (lower is better)
Translates to: RQEKTSNSSENESRAYGLRQCVC*KQSCSP
Trigger: AGGGGAGCACGACTGCTTCAAGCAAACACATTGCCT...CAGACCATAGGCCCTGCTCTCATTTTCAGAGCTGTTGCTTGTCTTTTCCTGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
CDS-3UTR CAA 90 bp CAACCCAACTCCTCCAAGCATTTGGCTCGCTGCTCCTTCCACCCCAAGATGAACTATGGCATCCAGTGTTaGTGCATCGAAGAAATCGTG +
Preference number: 5 (lower is better)
Translates to: QPNSSKHLARCSFHPKMNYGIQC*CIEEIV
Trigger: CACGATTTCTTCGATGCACAAACACTGGATGCCATA...GTTCATCTTGGGGTGGAAGGAGCAGCGAGCCAAATGCTTGGAGGAGTTGGGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CAA 90 bp TTTACGGTACCGCTCCCAACAGTAAGGAACAGCGACTCAGCCACTGTCAGAGGGACCTCTTCTGCGGCATaGTTCTGTAAATGTTTGGGT +
Preference number: 5 (lower is better)
Translates to: FTVPLPTVRNSDSATVRGTSSAA*FCKCLG
Trigger: ACCCAAACATTTACAGAACAATGCCGCAGAAGAGGT...CCCTCTGACAGTGGCTGAGTCGCTGTTCCTTACTGTTGGGAGCGGTACCGTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp CAGCGACTCAGCCACTGTCAGAGGGAGTGCCATAAACTTCTATTATGGGTCTCCGGGGTGTTATACACCTaGCAACCTTTCCACAAGCAA +
Preference number: 5 (lower is better)
Translates to: QRLSHCQRECHKLLLWVSGVLYT*QPFHKQ
Trigger: TTGCTTGTGGAAAGGTTGCAAGGTGTATAACACCCC...GGAGACCCATAATAGAAGTTTATGGCACTCCCTCTGACAGTGGCTGAGTCGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp CCCAACAGTAAGGAACAGCGACTCAGCCACTGTCAGAGGGAGTGCCATAAACTTAATGAGCGCCGTCTTTaGTTCTTTAGTTTCCTCCGC +
Preference number: 5 (lower is better)
Translates to: PNSKEQRLSHCQRECHKLNERRL*FFSFLR
Trigger: GCGGAGGAAACTAAAGAACAAAAGACGGCGCTCATT...AAGTTTATGGCACTCCCTCTGACAGTGGCTGAGTCGCTGTTCCTTACTGTTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp TGTCTCCTCCACTTCCACCTACAAGGAGGGCAGAGAGTATGCCACAGAGCACATTTGTTCTGTAAATGTTaGGGTCCAACAGCAAGGCAG +
Preference number: 5 (lower is better)
Translates to: CLLHFHLQGGQRVCHRAHLFCKC*GPTARQ
Trigger: CTGCCTTGCTGTTGGACCCAAACATTTACAGAACAA...ATGTGCTCTGTGGCATACTCTCTGCCCTCCTTGTAGGTGGAAGTGGAGGAGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CAA 90 bp TCCTCCCTCAGAGACTTTCTGGAAGGACGCCCGCCCAATGCTTTGTTCTTAGACTTGTTCTGTAAATGTTaGGGTCCAACAGCAAGGCAG +
Preference number: 5 (lower is better)
Translates to: SSLRDFLEGRPPNALFLDLFCKC*GPTARQ
Trigger: CTGCCTTGCTGTTGGACCCAAACATTTACAGAACAA...GTCTAAGAACAAAGCATTGGGCGGGCGTCCTTCCAGAAAGTCTCTGAGGGAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp CTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTAGGCAATGTGTTTGCTaGAAGCAGTCGTGCTCCCCT +
Preference number: 5 (lower is better)
Translates to: LVLKREPPDTRQYSLTVIRQCVC*KQSCSP
Trigger: AGGGGAGCACGACTGCTTCAAGCAAACACATTGCCT...AATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp AGGCAGGAAAAGACAAGCAACAGCTCTGAAAATGAGAGCAGGGCCTATGGTCTGGGGGTGTTATACACCTaGCAACCTTTCCACAAGCAA +
Preference number: 5 (lower is better)
Translates to: RQEKTSNSSENESRAYGLGVLYT*QPFHKQ
Trigger: TTGCTTGTGGAAAGGTTGCAAGGTGTATAACACCCC...CAGACCATAGGCCCTGCTCTCATTTTCAGAGCTGTTGCTTGTCTTTTCCTGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
CDS-3UTR CAA 90 bp CTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTGCCAACTCTGACTGGTaGACGGGGTGTTATACACCT +
Preference number: 5 (lower is better)
Translates to: LVLKREPPDTRQYSLTVIANSDW*TGCYTP
Trigger: AGGTGTATAACACCCCGTCAACCAGTCAGAGTTGGC...AATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp TGCCCAACACCTTCATCGAGAGCCACCTCAATGGCACCTATTTCCCTAATGTGTGAAGGAGATTCTTCTTaGGCCTTTGGCTGGCTAGAA +
Preference number: 5 (lower is better)
Translates to: CPTPSSRATSMAPISLMCEGDSS*AFGWLE
Trigger: TTCTAGCCAGCCAAAGGCCAAAGAAGAATCTCCTTC...ACACATTAGGGAAATAGGTGCCATTGAGGTGGCTCTCGATGAAGGTGTTGGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR CAA 90 bp GAGACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAAATGAGCGCCGTCTTTaGTTCTTTAGTTTCCTCCGC +
Preference number: 5 (lower is better)
Translates to: ETLVLKREPPDTRQYSLTNERRL*FFSFLR
Trigger: GCGGAGGAAACTAAAGAACAAAAGACGGCGCTCATT...TGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp AGGTCTTGTCAGACACATCACTGTGTCAGGCTTTCTACTCGAAGTCCACACCGTAATGAGCGCCGTCTTTaGTTCTTTAGTTTCCTCCGC +
Preference number: 5 (lower is better)
Translates to: RSCQTHHCVRLSTRSPHRNERRL*FFSFLR
Trigger: GCGGAGGAAACTAAAGAACAAAAGACGGCGCTCATT...ACGGTGTGGACTTCGAGTAGAAAGCCTGACACAGTGATGTGTCTGACAAGACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR CAA 90 bp CCCAACAGTAAGGAACAGCGACTCAGCCACTGTCAGAGGGAGTGCCATAAACTTTATGGCATCCAGTGTTaGTGCATCGAAGAAATCGTG +
Preference number: 5 (lower is better)
Translates to: PNSKEQRLSHCQRECHKLYGIQC*CIEEIV
Trigger: CACGATTTCTTCGATGCACAAACACTGGATGCCATA...AAGTTTATGGCACTCCCTCTGACAGTGGCTGAGTCGCTGTTCCTTACTGTTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp GAGAGAGACCCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAGCGTCCACTGGAAATaGTGCTGTCTATGTCCATTA +
Preference number: 5 (lower is better)
Translates to: ERDPSPEKGATRHTAILFSVHWK*CCLCPL
Trigger: TAATGGACATAGACAGCACAATTTCCAGTGGACGCT...AAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGGGTCTCTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087614.11
CDS-3UTR CAA 90 bp ATATTAACACGCTGTCCCCATGAGAGAGAGAGAGAGACCCTAGTCCTGAAAAGGGGGGTGTTATACACCTaGCAACCTTTCCACAAGCAA +
Preference number: 5 (lower is better)
Translates to: ILTRCPHERERETLVLKRGVLYT*QPFHKQ
Trigger: TTGCTTGTGGAAAGGTTGCAAGGTGTATAACACCCC...CCTTTTCAGGACTAGGGTCTCTCTCTCTCTCTCATGGGGACAGCGTGTTAATAT
48% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp GAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTCTCAGACCGGGGTGTTATACACCTaGCAACCTTTCCACAAGCAA +
Preference number: 5 (lower is better)
Translates to: EKGATRHTAILFNSDSQTGVLYT*QPFHKQ
Trigger: TTGCTTGTGGAAAGGTTGCAAGGTGTATAACACCCC...GGTCTGAGAATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp ATATTAACACGCTGTCCCCATGAGAGAGAGAGAGAGACCCTAGTCCTGAAAAGGAATGAGCGCCGTCTTTaGTTCTTTAGTTTCCTCCGC +
Preference number: 5 (lower is better)
Translates to: ILTRCPHERERETLVLKRNERRL*FFSFLR
Trigger: GCGGAGGAAACTAAAGAACAAAAGACGGCGCTCATT...CCTTTTCAGGACTAGGGTCTCTCTCTCTCTCTCATGGGGACAGCGTGTTAATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS TCA 90 bp GTACTGTGGAAAACAACACTGTGTCCCTTCCCTAGACTTTCTATGTaGGCAGAGAGGTTAAAGCAGATGGCTCGATGTCTTATGGCATCC +
Preference number: 5 (lower is better)
Translates to: VLWKTTLCPFPRLSM*AERLKQMARCLMAS
Trigger: GGATGCCATAAGACATCGAGCCATCTGCTTTAACCTCTCTGCTCACATAGAAAGTCTAGGGAAGGGACACAGTGTTGTTTTCCACAGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
ENSMUST00000162903.7
CDS-3UTR CAA 90 bp CTTTTTCTGAGAGAGAAGCCTTTCTGTGTTCGCCAGTTAAATTTCAACCCAACTTCATCATGGCCGGGGTaGAGCGTCCACTGGAAATTG +
Preference number: 5 (lower is better)
Translates to: LFLREKPFCVRQLNFNPTSSWPG*SVHWKL
Trigger: CAATTTCCAGTGGACGCTCAACCCCGGCCATGATGA...AGTTGGGTTGAAATTTAACTGGCGAACACAGAAAGGCTTCTCTCTCAGAAAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CAA 90 bp AAATTTAGAGTAAAAACTGCTGGTATTGCTGTCACTGTAGGGAGTGAGGACTCCAGGCAATGTGTTTGCTaGAAGCAGTCGTGCTCCCCT +
Preference number: 5 (lower is better)
Translates to: KFRVKTAGIAVTVGSEDSRQCVC*KQSCSP
Trigger: AGGGGAGCACGACTGCTTCAAGCAAACACATTGCCT...GGAGTCCTCACTCCCTACAGTGACAGCAATACCAGCAGTTTTTACTCTAAATTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp TATACTACTGTGGCCAACCCGAAGGGACTTCTCCACACCTGTTTGTCTCCTCCATTTAGTTTCCTCCGCTaGTTCATTCCAGCTTTAGAA +
Preference number: 5 (lower is better)
Translates to: YTTVANPKGLLHTCLSPPFSFLR*FIPALE
Trigger: TTCTAAAGCTGGAATGAACAAGCGGAGGAAACTAAA...TGGAGGAGACAAACAGGTGTGGAGAAGTCCCTTCGGGTTGGCCACAGTAGTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CAA 90 bp CTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTAATGAGCGCCGTCTTTaGTTCTTTAGTTTCCTCCGC +
Preference number: 5 (lower is better)
Translates to: LVLKREPPDTRQYSLTVINERRL*FFSFLR
Trigger: GCGGAGGAAACTAAAGAACAAAAGACGGCGCTCATT...AATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp GAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTCTCAGACCTATGGCATCCAGTGTTaGTGCATCGAAGAAATCGTG +
Preference number: 5 (lower is better)
Translates to: EKGATRHTAILFNSDSQTYGIQC*CIEEIV
Trigger: CACGATTTCTTCGATGCACAAACACTGGATGCCATA...GGTCTGAGAATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp CCTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTATGGCATCCAGTGTTaGTGCATCGAAGAAATCGTG +
Preference number: 5 (lower is better)
Translates to: PSPEKGATRHTAILFNSDYGIQC*CIEEIV
Trigger: CACGATTTCTTCGATGCACAAACACTGGATGCCATA...ATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp GCCATAAACTTCTATTATGGGTCTCCGTCCTCCCTCAGAGACTTTCTGGAAGGATTGTTCTGTAAATGTTaGGGTCCAACAGCAAGGCAG +
Preference number: 5 (lower is better)
Translates to: AINFYYGSPSSLRDFLEGLFCKC*GPTARQ
Trigger: CTGCCTTGCTGTTGGACCCAAACATTTACAGAACAA...TCCTTCCAGAAAGTCTCTGAGGGAGGACGGAGACCCATAATAGAAGTTTATGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp CCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTCTCAGTTGTTCTGTAAATGTTaGGGTCCAACAGCAAGGCAG +
Preference number: 5 (lower is better)
Translates to: PEKGATRHTAILFNSDSQLFCKC*GPTARQ
Trigger: CTGCCTTGCTGTTGGACCCAAACATTTACAGAACAA...CTGAGAATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp ATATTAACACGCTGTCCCCATGAGAGAGAGAGAGAGACCCTAGTCCTGAAAAGGACCTCTTCTGCGGCATaGTTCTGTAAATGTTTGGGT +
Preference number: 5 (lower is better)
Translates to: ILTRCPHERERETLVLKRTSSAA*FCKCLG
Trigger: ACCCAAACATTTACAGAACAATGCCGCAGAAGAGGT...CCTTTTCAGGACTAGGGTCTCTCTCTCTCTCTCATGGGGACAGCGTGTTAATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp AACTCTGGCAAATTCTACCTTTGCAGAAGATCATTTGCACATTTACTTGTTGGGTCATCATGGCCGGGGTaGAGCGTCCACTGGAAATTG +
Preference number: 5 (lower is better)
Translates to: NSGKFYLCRRSFAHLLVGSSWPG*SVHWKL
Trigger: CAATTTCCAGTGGACGCTCAACCCCGGCCATGATGA...CCCAACAAGTAAATGTGCAAATGATCTTCTGCAAAGGTAGAATTTGCCAGAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
CDS-3UTR CAA 90 bp AAGCCTTTCTGTGTTCGCCAGTTAAATTTCAACCCAACTCCTCCAAGCATTTGGGGGGTGTTATACACCTaGCAACCTTTCCACAAGCAA +
Preference number: 5 (lower is better)
Translates to: KPFCVRQLNFNPTPPSIWGVLYT*QPFHKQ
Trigger: TTGCTTGTGGAAAGGTTGCAAGGTGTATAACACCCC...CCAAATGCTTGGAGGAGTTGGGTTGAAATTTAACTGGCGAACACAGAAAGGCTT
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CAA 90 bp ACATTAACAGTAGTACACAGTCCCTTCAGTCTGCAGACATCTCTCCTAAAGGTGGAAGGAGATTCTTCTTaGGCCTTTGGCTGGCTAGAA +
Preference number: 5 (lower is better)
Translates to: TLTVVHSPFSLQTSLLKVEGDSS*AFGWLE
Trigger: TTCTAGCCAGCCAAAGGCCAAAGAAGAATCTCCTTC...CACCTTTAGGAGAGATGTCTGCAGACTGAAGGGACTGTGTACTACTGTTAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp AGGCAGGAAAAGACAAGCAACAGCTCTGAAAATGAGAGCAGGGCCTATGGTCTGTTTAGTTTCCTCCGCTaGTTCATTCCAGCTTTAGAA +
Preference number: 5 (lower is better)
Translates to: RQEKTSNSSENESRAYGLFSFLR*FIPALE
Trigger: TTCTAAAGCTGGAATGAACAAGCGGAGGAAACTAAA...CAGACCATAGGCCCTGCTCTCATTTTCAGAGCTGTTGCTTGTCTTTTCCTGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
CDS-3UTR CAA 90 bp CAGAGGGAGTGCCATAAACTTCTATTATGGGTCTCCGTCCTCCCTCAGAGACTTTTTAGTTTCCTCCGCTaGTTCATTCCAGCTTTAGAA +
Preference number: 5 (lower is better)
Translates to: QRECHKLLLWVSVLPQRLFSFLR*FIPALE
Trigger: TTCTAAAGCTGGAATGAACAAGCGGAGGAAACTAAA...AAGTCTCTGAGGGAGGACGGAGACCCATAATAGAAGTTTATGGCACTCCCTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp CTAGTCCTGAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTACCTCTTCTGCGGCATaGTTCTGTAAATGTTTGGGT +
Preference number: 5 (lower is better)
Translates to: LVLKREPPDTRQYSLTVITSSAA*FCKCLG
Trigger: ACCCAAACATTTACAGAACAATGCCGCAGAAGAGGT...AATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTCAGGACTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp TGTCAATCTTCCAGATGCCTCCATATCATTCTTGCTGCGAAACCGGTTAAAGCCAGCGTCCACTGGAAATaGTGCTGTCTATGTCCATTA +
Preference number: 5 (lower is better)
Translates to: CQSSRCLHIILAAKPVKASVHWK*CCLCPL
Trigger: TAATGGACATAGACAGCACAATTTCCAGTGGACGCT...GGCTTTAACCGGTTTCGCAGCAAGAATGATATGGAGGCATCTGGAAGATTGACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CAA 90 bp GAAAAGGGAGCCACCAGACACACGGCAATACTCTTTAACAGTGATTCTCAGACCTTTAGTTTCCTCCGCTaGTTCATTCCAGCTTTAGAA +
Preference number: 5 (lower is better)
Translates to: EKGATRHTAILFNSDSQTFSFLR*FIPALE
Trigger: TTCTAAAGCTGGAATGAACAAGCGGAGGAAACTAAA...GGTCTGAGAATCACTGTTAAAGAGTATTGCCGTGTGTCTGGTGGCTCCCTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp TCAGGACTTCAAATCAATACACACTGTCAAGATGGTTATCTTACAGTGCTTTTGGCCAACTCTGACTGGTaGACGGGGTGTTATACACCT +
Preference number: 5 (lower is better)
Translates to: SGLQINTHCQDGYLTVLLANSDW*TGCYTP
Trigger: AGGTGTATAACACCCCGTCAACCAGTCAGAGTTGGC...CAAAAGCACTGTAAGATAACCATCTTGACAGTGTGTATTGATTTGAAGTCCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
CDS-3UTR CAA 90 bp TTTTGTTCTGTAACTTTTTCTGAGAGAGAAGCCTTTCTGTGTTCGCCAGTTAAAGCCAACTCTGACTGGTaGACGGGGTGTTATACACCT +
Preference number: 5 (lower is better)
Translates to: FCSVTFSEREAFLCSPVKANSDW*TGCYTP
Trigger: AGGTGTATAACACCCCGTCAACCAGTCAGAGTTGGC...TTTAACTGGCGAACACAGAAAGGCTTCTCTCTCAGAAAAAGTTACAGAACAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS-3UTR CAA 90 bp TTGAGTACAAACTGTGTGGTCTGTGTTCACTGCTCCAAAAATGTTACCAGCTACTATGGCATCCAGTGTTaGTGCATCGAAGAAATCGTG +
Preference number: 5 (lower is better)
Translates to: LSTNCVVCVHCSKNVTSYYGIQC*CIEEIV
Trigger: CACGATTTCTTCGATGCACAAACACTGGATGCCATA...GTAGCTGGTAACATTTTTGGAGCAGTGAACACAGACCACACAGTTTGTACTCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
CDS-3UTR CAA 90 bp TTGAGTACAAACTGTGTGGTCTGTGTTCACTGCTCCAAAAATGTTACCAGCTACTTGTTCTGTAAATGTTaGGGTCCAACAGCAAGGCAG +
Preference number: 5 (lower is better)
Translates to: LSTNCVVCVHCSKNVTSYLFCKC*GPTARQ
Trigger: CTGCCTTGCTGTTGGACCCAAACATTTACAGAACAA...GTAGCTGGTAACATTTTTGGAGCAGTGAACACAGACCACACAGTTTGTACTCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032359.15
CDS-3UTR CAA 90 bp CTCTGGCAAATTCTACCTTTGCAGAAGATCATTTGCACATTTACTTGTTGGGGATATGGCATCCAGTGTTaGTGCATCGAAGAAATCGTG +
Preference number: 5 (lower is better)
Translates to: LWQILPLQKIICTFTCWGYGIQC*CIEEIV
Trigger: CACGATTTCTTCGATGCACAAACACTGGATGCCATA...TCCCCAACAAGTAAATGTGCAAATGATCTTCTGCAAAGGTAGAATTTGCCAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR CAA 90 bp ACACGGCAATACTCTTTAACAGTGATTCTCAGACCTAATTCGATAGACGAATTTGAAGGAGATTCTTCTTaGGCCTTTGGCTGGCTAGAA +
Preference number: 5 (lower is better)
Translates to: TRQYSLTVILRPNSIDEFEGDSS*AFGWLE
Trigger: TTCTAGCCAGCCAAAGGCCAAAGAAGAATCTCCTTC...AAATTCGTCTATCGAATTAGGTCTGAGAATCACTGTTAAAGAGTATTGCCGTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp AATACTCAAGCAAGGTCTACAATCATCGGTCAATTAATGACTTACAAGAACATGGAAGGAGATTCTTCTTaGGCCTTTGGCTGGCTAGAA +
Preference number: 5 (lower is better)
Translates to: NTQARSTIIGQLMTYKNMEGDSS*AFGWLE
Trigger: TTCTAGCCAGCCAAAGGCCAAAGAAGAATCTCCTTC...CATGTTCTTGTAAGTCATTAATTGACCGATGATTGTAGACCTTGCTTGAGTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS-3UTR CAA 90 bp GGCAAATTCTACCTTTGCAGAAGATCATTTGCACATTTACTTGTTGGGGAAGACTTTAGTTTCCTCCGCTaGTTCATTCCAGCTTTAGAA +
Preference number: 5 (lower is better)
Translates to: GKFYLCRRSFAHLLVGEDFSFLR*FIPALE
Trigger: TTCTAAAGCTGGAATGAACAAGCGGAGGAAACTAAA...GTCTTCCCCAACAAGTAAATGTGCAAATGATCTTCTGCAAAGGTAGAATTTGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032359.15
ENSMUST00000162903.7
CDS-3UTR CAA 90 bp TTTTGTTCTGTAACTTTTTCTGAGAGAGAAGCCTTTCTGTGTTCGCCAGTTAAAACCTCTTCTGCGGCATaGTTCTGTAAATGTTTGGGT +
Preference number: 5 (lower is better)
Translates to: FCSVTFSEREAFLCSPVKTSSAA*FCKCLG
Trigger: ACCCAAACATTTACAGAACAATGCCGCAGAAGAGGT...TTTAACTGGCGAACACAGAAAGGCTTCTCTCTCAGAAAAAGTTACAGAACAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095350.11
CDS CCA 90 bp GCATTGTTCTGTAAATGTTTGGGTCCAACAGCAAGGCAGTATCTTTaGGTAGCTTTGATAAATGAACTACTTTCGTTTTTAACTGATGTC +
Preference number: 5 (lower is better)
Translates to: ALFCKCLGPTARQYL*VALINELLSFLTDV
Trigger: GACATCAGTTAAAAACGAAAGTAGTTCATTTATCAAAGCTACCCAAAGATACTGCCTTGCTGTTGGACCCAAACATTTACAGAACAATGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
ENSMUST00000162903.7
CDS-3UTR CAA 90 bp AATACTCAAGCAAGGTCTACAATCATCGGTCAATTAATGACTTACAAGAACATGTTTAGTTTCCTCCGCTaGTTCATTCCAGCTTTAGAA +
Preference number: 5 (lower is better)
Translates to: NTQARSTIIGQLMTYKNMFSFLR*FIPALE
Trigger: TTCTAAAGCTGGAATGAACAAGCGGAGGAAACTAAA...CATGTTCTTGTAAGTCATTAATTGACCGATGATTGTAGACCTTGCTTGAGTATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000161335.8
CDS GCA 72 bp GGCTCAGCGGCTCCCCGTCGGACGACATCTCCAGGCTaGCCCGCCGGCCCCCGGAGGTCGCGCTGCTCCCGC +
Preference number: 6 (lower is better)
Translates to: GSAAPRRTTSPG*PAGPRRSRCSR
Trigger: GCGGGAGCAGCGCGACCTCCGGGGGCCGGCGGGGCAGCCTGGAGATGTCGTCCGACGGGGAGCCGCTGAGCC
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087614.11
ENSMUST00000095350.11
CDS GCA 72 bp CCAGGCCCTCCTTCCCGTCCCCATCGCCGCTGCTGCTaGTCGCCGCGCCCGGGCTCAGCGAGCGCGTCTCGT +
Preference number: 6 (lower is better)
Translates to: PGPPSRPHRRCC*SPRPGSASASR
Trigger: ACGAGACGCGCTCGCTGAGCCCGGGCGCGGCGAGCAGCAGCAGCGGCGATGGGGACGGGAAGGAGGGCCTGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087614.11
ENSMUST00000095350.11
CDS GCA 72 bp CCTCCAGGCCCTCCTTCCCGTCCCCATCGCCGCTGCTaGTGCTCGCCGCGCCCGGGCTCAGCGAGCGCGTCT +
Preference number: 6 (lower is better)
Translates to: PPGPPSRPHRRC*CSPRPGSASAS
Trigger: AGACGCGCTCGCTGAGCCCGGGCGCGGCGAGCAGCAGCAGCGGCGATGGGGACGGGAAGGAGGGCCTGGAGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087614.11
ENSMUST00000095350.11
CDS GCA 72 bp CCATTAGCGTACTGCTTATGCTGTCCTCCGAGTCCATaGGGCTCAGCGGCTCCCCGTCGGACGACATCTCCA +
Preference number: 6 (lower is better)
Translates to: PLAYCLCCPPSP*GSAAPRRTTSP
Trigger: TGGAGATGTCGTCCGACGGGGAGCCGCTGAGCCGCATGGACTCGGAGGACAGCATAAGCAGTACGCTAATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087614.11
ENSMUST00000095350.11
CDS GCA 72 bp ACGCTGACCATCGACATGTATGGAGCGAATGTGGTCTaGCAGGTCTGGGCTGGAGTTGAAGCATGCCTGGCA +
Preference number: 6 (lower is better)
Translates to: TLTIDMYGANVV*QVWAGVEACLA
Trigger: TGCCAGGCATGCTTCAACTCCAGCCCAGACCTGGCAGACCACATTCGCTCCATACATGTCGATGGTCAGCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS CCA 72 bp ATCGACATGTATGGAGCGAATGTGGTCTGCCAGGTCTaGGCTGGAGTTGAAGCATGCCTGGCACTGGTCCCA +
Preference number: 6 (lower is better)
Translates to: IDMYGANVVCQV*AGVEACLALVP
Trigger: TGGGACCAGTGCCAGGCATGCTTCAACTCCAGCCCAGACCTGGCAGACCACATTCGCTCCATACATGTCGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS CCA 72 bp AAACGAACACCCCTCCACGCTGACCATCGACATGTATaGAGCGAATGTGGTCTGCCAGGTCTGGGCTGGAGT +
Preference number: 6 (lower is better)
Translates to: KRTPLHADHRHV*SECGLPGLGWS
Trigger: ACTCCAGCCCAGACCTGGCAGACCACATTCGCTCCATACATGTCGATGGTCAGCGTGGAGGGGTGTTCGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS TCA 72 bp CTGAAGTGTGTGGGTACATGGCGAGCTAGCCCTCCCTaGGAAGCAAAGCTGGCATTGCAGCCACCAACTACA +
Preference number: 6 (lower is better)
Translates to: LKCVGTWRASPP*EAKLALQPPTT
Trigger: TGTAGTTGGTGGCTGCAATGCCAGCTTTGCTTCTCAGGGAGGGCTAGCTCGCCATGTACCCACACACTTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
ENSMUST00000162903.7
CDS CCA 72 bp TGCTTGAAGCAGTCGTGCTCCCCTGTCCATTCATCATaGCCGGGGTTGAGCGTCCACTGGAAATTGTGCTGT +
Preference number: 6 (lower is better)
Translates to: CLKQSCSPVHSS*PGLSVHWKLCC
Trigger: ACAGCACAATTTCCAGTGGACGCTCAACCCCGGCCATGATGAATGGACAGGGGAGCACGACTGCTTCAAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS CAA 72 bp CAGTCGTGCTCCCCTGTCCATTCATCATGGCCGGGGTaGAGCGTCCACTGGAAATTGTGCTGTCTATGTCCA +
Preference number: 6 (lower is better)
Translates to: QSCSPVHSSWPG*SVHWKLCCLCP
Trigger: TGGACATAGACAGCACAATTTCCAGTGGACGCTCAACCCCGGCCATGATGAATGGACAGGGGAGCACGACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS CAA 90 bp ATGCCTGGCACTGGTCCCAGCAACAGTTATAGGCAATGTGTTTGCTaGAAGCAGTCGTGCTCCCCTGTCCATTCATCATGGCCGGGGTTG +
Preference number: 6 (lower is better)
Translates to: MPGTGPSNSYRQCVC*KQSCSPVHSSWPGL
Trigger: CAACCCCGGCCATGATGAATGGACAGGGGAGCACGACTGCTTCAAGCAAACACATTGCCTATAACTGTTGCTGGGACCAGTGCCAGGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS TCA 72 bp AGTCGTGCTCCCCTGTCCATTCATCATGGCCGGGGTTaGGCGTCCACTGGAAATTGTGCTGTCTATGTCCAT +
Preference number: 6 (lower is better)
Translates to: SRAPLSIHHGRG*ASTGNCAVYVH
Trigger: ATGGACATAGACAGCACAATTTCCAGTGGACGCTCAACCCCGGCCATGATGAATGGACAGGGGAGCACGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS TCA 72 bp CCACTGTGTGTCAGCATGTGCCGCTGTAGCCAACTCTaGCTGGTTGACGGGGTGTTATACACCTTGCAACCT +
Preference number: 6 (lower is better)
Translates to: PLCVSMCRCSQL*LVDGVLYTLQP
Trigger: AGGTTGCAAGGTGTATAACACCCCGTCAACCAGTCAGAGTTGGCTACAGCGGCACATGCTGACACACAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS CAA 90 bp TGCTTGAAGCAGTCGTGCTCCCCTGTCCATTCATCATGGCCGGGGTaGAGCGTCCACTGGAAATTGTGCTGTCTATGTCCATTAGCGTAC +
Preference number: 6 (lower is better)
Translates to: CLKQSCSPVHSSWPG*SVHWKLCCLCPLAY
Trigger: GTACGCTAATGGACATAGACAGCACAATTTCCAGTGGACGCTCAACCCCGGCCATGATGAATGGACAGGGGAGCACGACTGCTTCAAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087614.11
ENSMUST00000095350.11
CDS TCA 72 bp GCCTTTGGCTGGCTAGAAACTTTTGAGGAGTTCTGCTaGCTGAAGTGTGTGGGTACATGGCGAGCTAGCCCT +
Preference number: 6 (lower is better)
Translates to: AFGWLETFEEFC*LKCVGTWRASP
Trigger: AGGGCTAGCTCGCCATGTACCCACACACTTCAGTCAGCAGAACTCCTCAAAAGTTTCTAGCCAGCCAAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
ENSMUST00000162903.7
CDS CCA 72 bp TGTGTGTCAGCATGTGCCGCTGTAGCCAACTCTGACTaGTTGACGGGGTGTTATACACCTTGCAACCTTTCC +
Preference number: 6 (lower is better)
Translates to: CVSACAAVANSD*LTGCYTPCNLS
Trigger: GGAAAGGTTGCAAGGTGTATAACACCCCGTCAACCAGTCAGAGTTGGCTACAGCGGCACATGCTGACACACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS CAA 72 bp GTGTCAGCATGTGCCGCTGTAGCCAACTCTGACTGGTaGACGGGGTGTTATACACCTTGCAACCTTTCCACA +
Preference number: 6 (lower is better)
Translates to: VSACAAVANSDW*TGCYTPCNLST
Trigger: TGTGGAAAGGTTGCAAGGTGTATAACACCCCGTCAACCAGTCAGAGTTGGCTACAGCGGCACATGCTGACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS TCA 72 bp CTGGTCCCAGCAACAGTTATAGGCAATGTGTTTGCTTaGAGCAGTCGTGCTCCCCTGTCCATTCATCATGGC +
Preference number: 6 (lower is better)
Translates to: LVPATVIGNVFA*SSRAPLSIHHG
Trigger: GCCATGATGAATGGACAGGGGAGCACGACTGCTTCAAGCAAACACATTGCCTATAACTGTTGCTGGGACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS GCA 72 bp AACAGTTATAGGCAATGTGTTTGCTTGAAGCAGTCGTaGTCCCCTGTCCATTCATCATGGCCGGGGTTGAGC +
Preference number: 6 (lower is better)
Translates to: NSYRQCVCLKQS*SPVHSSWPGLS
Trigger: GCTCAACCCCGGCCATGATGAATGGACAGGGGAGCACGACTGCTTCAAGCAAACACATTGCCTATAACTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS GCA 72 bp GGCACTGGTCCCAGCAACAGTTATAGGCAATGTGTTTaGTTGAAGCAGTCGTGCTCCCCTGTCCATTCATCA +
Preference number: 6 (lower is better)
Translates to: GTGPSNSYRQCV*LKQSCSPVHSS
Trigger: TGATGAATGGACAGGGGAGCACGACTGCTTCAAGCAAACACATTGCCTATAACTGTTGCTGGGACCAGTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
CDS GCA 72 bp TCATCATGGCCGGGGTTGAGCGTCCACTGGAAATTGTaGTGTCTATGTCCATTAGCGTACTGCTTATGCTGT +
Preference number: 6 (lower is better)
Translates to: SSWPGLSVHWKL*CLCPLAYCLCC
Trigger: ACAGCATAAGCAGTACGCTAATGGACATAGACAGCACAATTTCCAGTGGACGCTCAACCCCGGCCATGATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087614.11
ENSMUST00000095350.11
CDS CAA 72 bp CATTCATCATGGCCGGGGTTGAGCGTCCACTGGAAATaGTGCTGTCTATGTCCATTAGCGTACTGCTTATGC +
Preference number: 6 (lower is better)
Translates to: HSSWPGLSVHWK*CCLCPLAYCLC
Trigger: GCATAAGCAGTACGCTAATGGACATAGACAGCACAATTTCCAGTGGACGCTCAACCCCGGCCATGATGAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087614.11
ENSMUST00000095350.11
CDS CAA 90 bp GGCCGCGGTAATGAGCGCCGTCTTTTGTTCTTTAGTTTCCTCCGCTaGTTCATTCCAGCTTTAGAAGGAGATTCTTCTTTGGCCTTTGGC +
Preference number: 6 (lower is better)
Translates to: GRGNERRLLFFSFLR*FIPALEGDSSLAFG
Trigger: GCCAAAGGCCAAAGAAGAATCTCCTTCTAAAGCTGGAATGAACAAGCGGAGGAAACTAAAGAACAAAAGACGGCGCTCATTACCGCGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
ENSMUST00000162903.7
CDS TCA 72 bp AGATTCTTCTTTGGCCTTTGGCTGGCTAGAAACTTTTaGGGAGTTCTGCTGACTGAAGTGTGTGGGTACATG +
Preference number: 6 (lower is better)
Translates to: RFFFGLWLARNF*GVLLTEVCGYM
Trigger: CATGTACCCACACACTTCAGTCAGCAGAACTCCTCAAAAGTTTCTAGCCAGCCAAAGGCCAAAGAAGAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
ENSMUST00000162903.7
CDS TCA 72 bp AAAACAACACTGTGTCCCTTCCCTAGACTTTCTATGTaGGCAGAGAGGTTAAAGCAGATGGCTCGATGTCTT +
Preference number: 6 (lower is better)
Translates to: KTTLCPFPRLSM*AERLKQMARCL
Trigger: AAGACATCGAGCCATCTGCTTTAACCTCTCTGCTCACATAGAAAGTCTAGGGAAGGGACACAGTGTTGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
ENSMUST00000162903.7
CDS CCA 72 bp CCAGATTCCTCCTTTCTCTTCGCTATTACAGTACTGTaGAAAACAACACTGTGTCCCTTCCCTAGACTTTCT +
Preference number: 6 (lower is better)
Translates to: PDSSFLFAITVL*KTTLCPFPRLS
Trigger: AGAAAGTCTAGGGAAGGGACACAGTGTTGTTTTCCACAGTACTGTAATAGCGAAGAGAAAGGAGGAATCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
ENSMUST00000162903.7
CDS CAA 72 bp CGCTTGTTCATTCCAGCTTTAGAAGGAGATTCTTCTTaGGCCTTTGGCTGGCTAGAAACTTTTGAGGAGTTC +
Preference number: 6 (lower is better)
Translates to: RLFIPALEGDSS*AFGWLETFEEF
Trigger: GAACTCCTCAAAAGTTTCTAGCCAGCCAAAGGCCAAAGAAGAATCTCCTTCTAAAGCTGGAATGAACAAGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
ENSMUST00000162903.7
CDS TCA 72 bp ACCCATACATCTGGCAGAATGTCTTCCGGCATCCAATaGAGCAAAAGCTTTATCTTTCCAGATTCCTCCTTT +
Preference number: 6 (lower is better)
Translates to: THTSGRMSSGIQ*SKSFIFPDSSF
Trigger: AAAGGAGGAATCTGGAAAGATAAAGCTTTTGCTTCATTGGATGCCGGAAGACATTCTGCCAGATGTATGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
ENSMUST00000162903.7
CDS CAA 72 bp TTGGGTCCAACAGCAAGGCAGTATCTTTGGGTAGCTTaGATAAATGAACTACTTTCGTTTTTAACTGATGTC +
Preference number: 6 (lower is better)
Translates to: LGPTARQYLWVA*INELLSFLTDV
Trigger: GACATCAGTTAAAAACGAAAGTAGTTCATTTATCAAAGCTACCCAAAGATACTGCCTTGCTGTTGGACCCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
ENSMUST00000162903.7
CDS CAA 90 bp TGTAAATGTTTGGGTCCAACAGCAAGGCAGTATCTTTGGGTAGCTTaGATAAATGAACTACTTTCGTTTTTAACTGATGTCGTTCACTCT +
Preference number: 6 (lower is better)
Translates to: CKCLGPTARQYLWVA*INELLSFLTDVVHS
Trigger: AGAGTGAACGACATCAGTTAAAAACGAAAGTAGTTCATTTATCAAAGCTACCCAAAGATACTGCCTTGCTGTTGGACCCAAACATTTACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
ENSMUST00000162903.7
CDS CCA 72 bp TGTAAATGTTTGGGTCCAACAGCAAGGCAGTATCTTTaGGTAGCTTTGATAAATGAACTACTTTCGTTTTTA +
Preference number: 6 (lower is better)
Translates to: CKCLGPTARQYL*VALINELLSFL
Trigger: TAAAAACGAAAGTAGTTCATTTATCAAAGCTACCCAAAGATACTGCCTTGCTGTTGGACCCAAACATTTACA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000032359.15
ENSMUST00000087614.11
ENSMUST00000095350.11
ENSMUST00000160836.8
ENSMUST00000161335.8
ENSMUST00000162903.7