Pregenerated sensors for ADTRP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058022Ensembl transcript IDs: ENSMUST00000072012.10, ENSMUST00000121404.8, ENSMUST00000137905.2, ENSMUST00000179758.8, ENSMUST00000220680.2, ENSMUST00000221691.2, ENSMUST00000223337.2
Found 89 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGGAAGCTGGTAGGAGGAGCAGGAGTTGGGCAAGGGTGGGGAGGTaGTGGTCTTGGGAGGCAAATATGGTTAAAACACATGAATTATTT | + |
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Preference number: 1 (lower is better) Translates to: REAGRRSRSWARVGR*WSWEANMVKTHELF Trigger: AAATAATTCATGTGTTTTAACCATATTTGCCTCCCAAGACCATCACCTCCCCACCCTTGCCCAACTCCTGCTCCTCCTACCAGCTTCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| 3UTR TCA 90 bp | TCTTCTTCATCTGTGGCTTTGCTATGGCACCCCATTTCCAGTGATTaGTCTTCTCGCCAAACAGGTAGATGCCGGCGACTAGGATGTAAG | + |
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Preference number: 1 (lower is better) Translates to: SSSSVALLWHPISSD*SSRQTGRCRRLGCK Trigger: CTTACATCCTAGTCGCCGGCATCTACCTGTTTGGCGAGAAGATCAATCACTGGAAATGGGGTGCCATAGCAAAGCCACAGATGAAGAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220680.2 |
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| 3UTR CCA 90 bp | CCATGGCTCTTGGAAAATAGTACGTCATCAATTCTTCTTCATCTGTaGCTTTGCTATGGCACCCCATTTCCAGTGATTGATCTTCTCGCC | + |
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Preference number: 1 (lower is better) Translates to: PWLLENSTSSILLHL*LCYGTPFPVIDLLA Trigger: GGCGAGAAGATCAATCACTGGAAATGGGGTGCCATAGCAAAGCCACAGATGAAGAAGAATTGATGACGTACTATTTTCCAAGAGCCATGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220680.2 |
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| 3UTR GCA 90 bp | AGGAGATCCCAAGAGAAGCTCCCTTTATATCCTTTATTAAAACTATaGAACATTCTCCGTCCTTTCTATCTCCCCAAGCAAGTCCACCCC | + |
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Preference number: 1 (lower is better) Translates to: RRSQEKLPLYPLLKL*NILRPFYLPKQVHP Trigger: GGGGTGGACTTGCTTGGGGAGATAGAAAGGACGGAGAATGTTGCATAGTTTTAATAAAGGATATAAAGGGAGCTTCTCTTGGGATCTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 ENSMUST00000220680.2 |
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| 3UTR TCA 90 bp | TTACGTTCCACATTAATTGGTAACTCCCACCCCAAATGTTTGCTCTaGAGAGGGGTAGACTTCCCACCACTTGTTATAAATTATTCTCAC | + |
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Preference number: 1 (lower is better) Translates to: LRSTLIGNSHPKCLL*RGVDFPPLVINYSH Trigger: GTGAGAATAATTTATAACAAGTGGTGGGAAGTCTACCCCTCTTCAGAGCAAACATTTGGGGTGGGAGTTACCAATTAATGTGGAACGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| 3UTR-3UTR GCA 90 bp | CTTCTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAACCCTGAATTCACGATCCCAGAATGCAGGGAATaGCCTGTGTGCACCACTACT | + |
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Preference number: 2 (lower is better) Translates to: LLMTGSYSAVQGNPEFTIPECRE*PVCTTT Trigger: AGTAGTGGTGCACACAGGGCATTCCCTGCATTCTGG...GATCGTGAATTCAGGGTTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| 3UTR-3UTR GCA 90 bp | CTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAACCCTGAATTCACGATCTTCGGTAAAGAGAGTTTATaGCCCCATGTTCTTGTCCCC | + |
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Preference number: 2 (lower is better) Translates to: LMTGSYSAVQGNPEFTIFGKESL*PHVLVP Trigger: GGGGACAAGAACATGGGGGCATAAACTCTCTTTACC...GAAGATCGTGAATTCAGGGTTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| 3UTR-3UTR CCA 90 bp | TGTGTGTGTGTCTGCATGTCTGTCTGTGTGTATGTGTCTGAGAGGTGGGGGAAGAAACCAGTATCCAAATaGAAGAGCCATTTGACAGCC | + |
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Preference number: 2 (lower is better) Translates to: CVCVCMSVCVYVSERWGKKPVSK*KSHLTA Trigger: GGCTGTCAAATGGCTCTTCCATTTGGATACTGGTTT...CTTCCCCCACCTCTCAGACACATACACACAGACAGACATGCAGACACACACACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| 3UTR-3UTR TCA 90 bp | CTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAACCCTGAATTCACGATCTTCTTTAGACAAGCTTGTTaGGCCTTTTTGGTCAGAAAC | + |
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Preference number: 2 (lower is better) Translates to: LMTGSYSAVQGNPEFTIFFRQAC*AFLVRN Trigger: GTTTCTGACCAAAAAGGCTCAACAAGCTTGTCTAAA...GAAGATCGTGAATTCAGGGTTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| 3UTR-3UTR CCA 90 bp | CTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAACCCTGAATTCACGATCTTCCTTGTTGAGCCTTTTTaGTCAGAAACAAAATGTGGA | + |
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Preference number: 2 (lower is better) Translates to: LMTGSYSAVQGNPEFTIFLVEPF*SETKCG Trigger: TCCACATTTTGTTTCTGACCAAAAAGGCTCAACAAG...GAAGATCGTGAATTCAGGGTTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| 3UTR-3UTR CCA 90 bp | GGGGTAGACTTCCCACCACTTGTTATAAATTATTCTCACTGCCCCAGCGAGTTTCACCCATTCTCTAAATaGTCCAGCAACAAGTTTAGA | + |
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Preference number: 2 (lower is better) Translates to: GVDFPPLVINYSHCPSEFHPFSK*SSNKFR Trigger: TCTAAACTTGTTGCTGGACCATTTAGAGAATGGGTG...AAACTCGCTGGGGCAGTGAGAATAATTTATAACAAGTGGTGGGAAGTCTACCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| 3UTR-3UTR GCA 90 bp | AATTATTATTTTTGGTCTTCTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAAGGTAAAGAGAGTTTATaGCCCCATGTTCTTGTCCCC | + |
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Preference number: 2 (lower is better) Translates to: NYYFWSSNDRVLLCSPGQGKESL*PHVLVP Trigger: GGGGACAAGAACATGGGGGCATAAACTCTCTTTACC...TTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAGAAGACCAAAAATAATAATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| 3UTR-3UTR GCA 90 bp | GGGGTAGACTTCCCACCACTTGTTATAAATTATTCTCACTGCCCCAGCGAGTTTCATTTACATTTCAAATaGTATCCCAAAAGTCCCCCA | + |
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Preference number: 2 (lower is better) Translates to: GVDFPPLVINYSHCPSEFHLHFK*YPKSPP Trigger: TGGGGGACTTTTGGGATAGCATTTGAAATGTAAATG...AAACTCGCTGGGGCAGTGAGAATAATTTATAACAAGTGGTGGGAAGTCTACCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| 3UTR-3UTR GCA 90 bp | GGGGTAGACTTCCCACCACTTGTTATAAATTATTCTCACTGCCCCAGCGAGTTTCCTTTATTAAAACTATaGAACATTCTCCGTCCTTTC | + |
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Preference number: 2 (lower is better) Translates to: GVDFPPLVINYSHCPSEFPLLKL*NILRPF Trigger: GAAAGGACGGAGAATGTTGCATAGTTTTAATAAAGG...AAACTCGCTGGGGCAGTGAGAATAATTTATAACAAGTGGTGGGAAGTCTACCCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| 3UTR-3UTR CCA 90 bp | TATTATTTTTGGTCTTCTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAACCCGTCAGAAACAAAATGTaGAGGTCAATCAAAAGTAAC | + |
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Preference number: 2 (lower is better) Translates to: YYFWSSNDRVLLCSPGQPVRNKM*RSIKSN Trigger: GTTACTTTTGATTGACCTCCACATTTTGTTTCTGAC...GGGTTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAGAAGACCAAAAATAATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| 3UTR-3UTR TCA 90 bp | AATTATTATTTTTGGTCTTCTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAATTTAGACAAGCTTGTTaGGCCTTTTTGGTCAGAAAC | + |
|
Preference number: 2 (lower is better) Translates to: NYYFWSSNDRVLLCSPGQFRQAC*AFLVRN Trigger: GTTTCTGACCAAAAAGGCTCAACAAGCTTGTCTAAA...TTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAGAAGACCAAAAATAATAATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| 3UTR-3UTR CCA 90 bp | ATGGAGGTACGCAGAGACCATCAAATTAAGGGAAATAAGCCAAACTTAGAAATATATGTGTCTGAGAGGTaGGGGAAGATGAAATCAGAA | + |
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Preference number: 2 (lower is better) Translates to: MEVRRDHQIKGNKPNLEIYVSER*GKMKSE Trigger: TTCTGATTTCATCTTCCCCCACCTCTCAGACACATA...TATTTCTAAGTTTGGCTTATTTCCCTTAATTTGATGGTCTCTGCGTACCTCCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| 3UTR-3UTR GCA 90 bp | TTCCATGGCTCTTGGAAAATAGTACGTCATCAATTCTTCTTCATCTGTGGCTTTCCTTTATTAAAACTATaGAACATTCTCCGTCCTTTC | + |
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Preference number: 2 (lower is better) Translates to: FHGSWKIVRHQFFFICGFPLLKL*NILRPF Trigger: GAAAGGACGGAGAATGTTGCATAGTTTTAATAAAGG...AAAGCCACAGATGAAGAAGAATTGATGACGTACTATTTTCCAAGAGCCATGGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220680.2 |
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| 3UTR-3UTR CCA 90 bp | ATGGAGGTACGCAGAGACCATCAAATTAAGGGAAATAAGCCAAACTTAGAAATAAAGTTTCTTCTTCCATaGCTCTTGGAAAATAGTACG | + |
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Preference number: 2 (lower is better) Translates to: MEVRRDHQIKGNKPNLEIKFLLP*LLENST Trigger: CGTACTATTTTCCAAGAGCCATGGAAGAAGAAACTT...TATTTCTAAGTTTGGCTTATTTCCCTTAATTTGATGGTCTCTGCGTACCTCCAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| 3UTR-3UTR CCA 90 bp | AACCAGGAGATCCCAAGAGAAGCTCCCTTTATATCCTTTATTAAAACTATGCAAAAGTTTCTTCTTCCATaGCTCTTGGAAAATAGTACG | + |
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Preference number: 2 (lower is better) Translates to: NQEIPREAPFISFIKTMQKFLLP*LLENST Trigger: CGTACTATTTTCCAAGAGCCATGGAAGAAGAAACTT...TTGCATAGTTTTAATAAAGGATATAAAGGGAGCTTCTCTTGGGATCTCCTGGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 ENSMUST00000220680.2 |
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| 3UTR-3UTR CCA 90 bp | TATCCTTTATTAAAACTATGCAACATTCTCCGTCCTTTCTATCTCCCCAAGCAAAAGTTTCTTCTTCCATaGCTCTTGGAAAATAGTACG | + |
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Preference number: 2 (lower is better) Translates to: YPLLKLCNILRPFYLPKQKFLLP*LLENST Trigger: CGTACTATTTTCCAAGAGCCATGGAAGAAGAAACTT...TTGCTTGGGGAGATAGAAAGGACGGAGAATGTTGCATAGTTTTAATAAAGGATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 ENSMUST00000220680.2 |
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| 3UTR-3UTR CCA 90 bp | AATTATTATTTTTGGTCTTCTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAAGTCAGAAACAAAATGTaGAGGTCAATCAAAAGTAAC | + |
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Preference number: 2 (lower is better) Translates to: NYYFWSSNDRVLLCSPGQVRNKM*RSIKSN Trigger: GTTACTTTTGATTGACCTCCACATTTTGTTTCTGAC...TTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAGAAGACCAAAAATAATAATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| 3UTR TCA 72 bp | CTGCAGTCCAGGGCAACCCTGAATTCACGATCTTCCTaGTTTAGCCTCCAGAATGCAGGGAATGCCCTGTGT | + |
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Preference number: 3 (lower is better) Translates to: LQSRATLNSRSS*FSLQNAGNALC Trigger: ACACAGGGCATTCCCTGCATTCTGGAGGCTAAATCAGGAAGATCGTGAATTCAGGGTTGCCCTGGACTGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| 3UTR-3UTR CAA 90 bp | CTTCTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAACCCTGAATTCACGATCTATGCCCCCATGTTCTaGTCCCCACACCCATTCTCT | + |
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Preference number: 3 (lower is better) Translates to: LLMTGSYSAVQGNPEFTIYAPMF*SPHPFS Trigger: AGAGAATGGGTGTGGGGACAAGAACATGGGGGCATA...GATCGTGAATTCAGGGTTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAGAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| 3UTR TCA 72 bp | AATGACAGGGTCTTACTCTGCAGTCCAGGGCAACCCTaGATTCACGATCTTCCTGATTTAGCCTCCAGAATG | + |
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Preference number: 3 (lower is better) Translates to: NDRVLLCSPGQP*IHDLPDLASRM Trigger: CATTCTGGAGGCTAAATCAGGAAGATCGTGAATTCAGGGTTGCCCTGGACTGCAGAGTAAGACCCTGTCATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| 3UTR GCA 72 bp | TATGGTATACACACTGACTTCCCAATAACTCATCTGTaGCTCCCTTCAAACCAGTATCCAAATGGAAGAGCC | + |
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Preference number: 3 (lower is better) Translates to: YGIHTDFPITHL*LPSNQYPNGRA Trigger: GGCTCTTCCATTTGGATACTGGTTTGAAGGGAGGCACAGATGAGTTATTGGGAAGTCAGTGTGTATACCATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| 3UTR TCA 72 bp | ACATTAATTGGTAACTCCCACCCCAAATGTTTGCTCTaGAGAGGGGTAGACTTCCCACCACTTGTTATAAAT | + |
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Preference number: 3 (lower is better) Translates to: TLIGNSHPKCLL*RGVDFPPLVIN Trigger: ATTTATAACAAGTGGTGGGAAGTCTACCCCTCTTCAGAGCAAACATTTGGGGTGGGAGTTACCAATTAATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| 3UTR TCA 72 bp | TCTAAATGGTCCAGCAACAAGTTTAGACAAGCTTGTTaGGCCTTTTTGGTCAGAAACAAAATGTGGAGGTCA | + |
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Preference number: 3 (lower is better) Translates to: SKWSSNKFRQAC*AFLVRNKMWRS Trigger: TGACCTCCACATTTTGTTTCTGACCAAAAAGGCTCAACAAGCTTGTCTAAACTTGTTGCTGGACCATTTAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| 3UTR CCA 72 bp | TTGGAAAATAGTACGTCATCAATTCTTCTTCATCTGTaGCTTTGCTATGGCACCCCATTTCCAGTGATTGAT | + |
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Preference number: 3 (lower is better) Translates to: LENSTSSILLHL*LCYGTPFPVID Trigger: ATCAATCACTGGAAATGGGGTGCCATAGCAAAGCCACAGATGAAGAAGAATTGATGACGTACTATTTTCCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220680.2 |
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| 3UTR CCA 72 bp | CTCATAAAGAATGAAATTACATCCTTTGCTGGACAATaGAGGTACGCAGAGACCATCAAATTAAGGGAAATA | + |
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Preference number: 3 (lower is better) Translates to: LIKNEITSFAGQ*RYAETIKLREI Trigger: TATTTCCCTTAATTTGATGGTCTCTGCGTACCTCCATTGTCCAGCAAAGGATGTAATTTCATTCTTTATGAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| CDS-3UTR GCA 90 bp | GGGGTAGACTTCCCACCACTTGTTATAAATTATTCTCACTGCCCCAGCGAGTTTCCTGGGTGTCCCAGCTaGCCTCTGTTCAGGCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: GVDFPPLVINYSHCPSEFPGCPS*PLFRLE Trigger: TTCCAGCCTGAACAGAGGGCAGCTGGGACACCCAGG...AAACTCGCTGGGGCAGTGAGAATAATTTATAACAAGTGGTGGGAAGTCTACCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| CDS-3UTR TCA 90 bp | CTTCTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAACCCTGAATTCACGATCAAGCACCCAGCAAGGTaGGTCCTAGCTTCTTCGATG | + |
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Preference number: 4 (lower is better) Translates to: LLMTGSYSAVQGNPEFTIKHPAR*VLASSM Trigger: CATCGAAGAAGCTAGGACTCACCTTGCTGGGTGCTT...GATCGTGAATTCAGGGTTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| CDS-3UTR TCA 90 bp | GGTCTTCTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAACCCTGAATTCACGCCCATTTCCAGTGATTaGTCTTCTCGCCAAACAGGT | + |
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Preference number: 4 (lower is better) Translates to: GLLMTGSYSAVQGNPEFTPISSD*SSRQTG Trigger: ACCTGTTTGGCGAGAAGATCAATCACTGGAAATGGG...CGTGAATTCAGGGTTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAGAAGACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| CDS-3UTR TCA 90 bp | CTTCTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAACCCTGAATTCACGATCGCACCCCATTTCCAGTaGTTGATCTTCTCGCCAAAC | + |
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Preference number: 4 (lower is better) Translates to: LLMTGSYSAVQGNPEFTIAPHFQ*LIFSPN Trigger: GTTTGGCGAGAAGATCAATCACTGGAAATGGGGTGC...GATCGTGAATTCAGGGTTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| CDS-3UTR CCA 90 bp | AACCAGGAGATCCCAAGAGAAGCTCCCTTTATATCCTTTATTAAAACTATGCAATCCAGAGCGGGCCTGTaGAGGGCGAGCTCCCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: NQEIPREAPFISFIKTMQSRAGL*RASSLA Trigger: AGCCAGGGAGCTCGCCCTCCACAGGCCCGCTCTGGA...TTGCATAGTTTTAATAAAGGATATAAAGGGAGCTTCTCTTGGGATCTCCTGGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220680.2 |
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| CDS-3UTR CCA 90 bp | TATGGCACCCCATTTCCAGTGATTGATCTTCTCGCCAAACAGGTAGATGCCGGCGTGAAAAGGGAAATATaGAGGTATGCTCCAGAGCGG | + |
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Preference number: 4 (lower is better) Translates to: YGTPFPVIDLLAKQVDAGVKREI*RYAPER Trigger: CCGCTCTGGAGCATACCTCCATATTTCCCTTTTCAC...GCCGGCATCTACCTGTTTGGCGAGAAGATCAATCACTGGAAATGGGGTGCCATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220680.2 |
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| CDS-3UTR TCA 90 bp | CTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAACCCTGAATTCACGATCTTCCCCATTTCCAGTGATTaGTCTTCTCGCCAAACAGGT | + |
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Preference number: 4 (lower is better) Translates to: LMTGSYSAVQGNPEFTIFPISSD*SSRQTG Trigger: ACCTGTTTGGCGAGAAGATCAATCACTGGAAATGGG...GAAGATCGTGAATTCAGGGTTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| CDS-3UTR TCA 90 bp | AATTATTATTTTTGGTCTTCTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAAGCTCTGCGTTCACTCTaGGTCCTGGGTGTCCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: NYYFWSSNDRVLLCSPGQALRSL*VLGVPA Trigger: AGCTGGGACACCCAGGACTCAGAGTGAACGCAGAGC...TTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAGAAGACCAAAAATAATAATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| CDS-3UTR GCA 90 bp | GAAGATGATAATACCCAGTGGGCTGAGGGAGTCAAACACGGGGTACACCCAGTTCCAAAGAAAATGGCCTaGAAGAGCAGATTAAGGAGT | + |
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Preference number: 4 (lower is better) Translates to: EDDNTQWAEGVKHGVHPVPKKMA*KSRLRS Trigger: ACTCCTTAATCTGCTCTTGCAGGCCATTTTCTTTGG...AACTGGGTGTACCCCGTGTTTGACTCCCTCAGCCCACTGGGTATTATCATCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220680.2 |
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| CDS-3UTR GCA 90 bp | AACCAGGAGATCCCAAGAGAAGCTCCCTTTATATCCTTTATTAAAACTATGCAACAGTGGCACCCGCTCTaGGTTCACTCTGAGTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: NQEIPREAPFISFIKTMQQWHPL*VHSESW Trigger: CCAGGACTCAGAGTGAACGCAGAGCGGGTGCCACTG...TTGCATAGTTTTAATAAAGGATATAAAGGGAGCTTCTCTTGGGATCTCCTGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| CDS-3UTR GCA 90 bp | CTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAACCCTGAATTCACGATCTTCCCAAAGAAAATGGCCTaGAAGAGCAGATTAAGGAGT | + |
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Preference number: 4 (lower is better) Translates to: LMTGSYSAVQGNPEFTIFPKKMA*KSRLRS Trigger: ACTCCTTAATCTGCTCTTGCAGGCCATTTTCTTTGG...GAAGATCGTGAATTCAGGGTTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| CDS-3UTR CCA 90 bp | CTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAACCCTGAATTCACGATCTTCGTGAAAAGGGAAATATaGAGGTATGCATTGCGTGGT | + |
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Preference number: 4 (lower is better) Translates to: LMTGSYSAVQGNPEFTIFVKREI*RYALRG Trigger: ACCACGCAATGCATACCTCCATATTTCCCTTTTCAC...GAAGATCGTGAATTCAGGGTTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| CDS-3UTR GCA 90 bp | GCTGGACAATGGAGGTACGCAGAGACCATCAAATTAAGGGAAATAAGCCAAACTTATGGAGGTATGCATTaGGTGGTTAACCCATGCTGG | + |
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Preference number: 4 (lower is better) Translates to: AGQWRYAETIKLREISQTYGGMH*VVNPCW Trigger: CCAGCATGGGTTAACCACGCAATGCATACCTCCATA...AGTTTGGCTTATTTCCCTTAATTTGATGGTCTCTGCGTACCTCCATTGTCCAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| CDS-3UTR GCA 90 bp | GATGTCAGCCTTTTAGAAAACCAGGAGATCCCAAGAGAAGCTCCCTTTATATCCTATGGAGGTATGCATTaGGTGGTTAACCCATGCTGG | + |
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Preference number: 4 (lower is better) Translates to: DVSLLENQEIPREAPFISYGGMH*VVNPCW Trigger: CCAGCATGGGTTAACCACGCAATGCATACCTCCATA...GGATATAAAGGGAGCTTCTCTTGGGATCTCCTGGTTTTCTAAAAGGCTGACATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| CDS-3UTR CCA 90 bp | TATCCTTTATTAAAACTATGCAACATTCTCCGTCCTTTCTATCTCCCCAAGCAAGTTCACTCTGAGTCCTaGGTGTCCCAGCTGCCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: YPLLKLCNILRPFYLPKQVHSES*VSQLPS Trigger: AGAGGGCAGCTGGGACACCCAGGACTCAGAGTGAAC...TTGCTTGGGGAGATAGAAAGGACGGAGAATGTTGCATAGTTTTAATAAAGGATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| CDS-3UTR CCA 90 bp | GGTCTTCTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAACCCTGAATTCACGATTCCTTCCAATCTGTaGGATGTGATAATTGAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: GLLMTGSYSAVQGNPEFTIPSNL*DVIIEE Trigger: TTCCTCAATTATCACATCCCACAGATTGGAAGGAAT...CGTGAATTCAGGGTTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAGAAGACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| CDS-3UTR TCA 90 bp | GGGGTAGACTTCCCACCACTTGTTATAAATTATTCTCACTGCCCCAGCGAGTTTTGTCTTTCCTTCCGATaGCTCTTTTCAGCACATCAT | + |
|
Preference number: 4 (lower is better) Translates to: GVDFPPLVINYSHCPSEFCLSFR*LFSAHH Trigger: ATGATGTGCTGAAAAGAGTCATCGGAAGGAAAGACA...AAACTCGCTGGGGCAGTGAGAATAATTTATAACAAGTGGTGGGAAGTCTACCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| CDS-3UTR CCA 90 bp | GCTGGACAATGGAGGTACGCAGAGACCATCAAATTAAGGGAAATAAGCCAAACTAGTGGTACACGCAAGTaGTTGTTTTCGTCATGGCTT | + |
|
Preference number: 4 (lower is better) Translates to: AGQWRYAETIKLREISQTSGTRK*LFSSWL Trigger: AAGCCATGACGAAAACAACCACTTGCGTGTACCACT...AGTTTGGCTTATTTCCCTTAATTTGATGGTCTCTGCGTACCTCCATTGTCCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| CDS-3UTR TCA 90 bp | AACCAGGAGATCCCAAGAGAAGCTCCCTTTATATCCTTTATTAAAACTATGCAAAAGCACCCAGCAAGGTaGGTCCTAGCTTCTTCGATG | + |
|
Preference number: 4 (lower is better) Translates to: NQEIPREAPFISFIKTMQKHPAR*VLASSM Trigger: CATCGAAGAAGCTAGGACTCACCTTGCTGGGTGCTT...TTGCATAGTTTTAATAAAGGATATAAAGGGAGCTTCTCTTGGGATCTCCTGGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| CDS-3UTR TCA 90 bp | TCCTTTATTAAAACTATGCAACATTCTCCGTCCTTTCTATCTCCCCAAGCAAGTGCACCCCATTTCCAGTaGTTGATCTTCTCGCCAAAC | + |
|
Preference number: 4 (lower is better) Translates to: SFIKTMQHSPSFLSPQASAPHFQ*LIFSPN Trigger: GTTTGGCGAGAAGATCAATCACTGGAAATGGGGTGC...ACTTGCTTGGGGAGATAGAAAGGACGGAGAATGTTGCATAGTTTTAATAAAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| CDS-3UTR CCA 90 bp | GATGTCAGCCTTTTAGAAAACCAGGAGATCCCAAGAGAAGCTCCCTTTATATCCGTGAAAAGGGAAATATaGAGGTATGCATTGCGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: DVSLLENQEIPREAPFISVKREI*RYALRG Trigger: ACCACGCAATGCATACCTCCATATTTCCCTTTTCAC...GGATATAAAGGGAGCTTCTCTTGGGATCTCCTGGTTTTCTAAAAGGCTGACATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| CDS-3UTR CCA 90 bp | TATTATTTTTGGTCTTCTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAACCCCGATGGATAGTTGTGTaGTCTGAGGATGGTTTCAAA | + |
|
Preference number: 4 (lower is better) Translates to: YYFWSSNDRVLLCSPGQPRWIVV*SEDGFK Trigger: TTTGAAACCATCCTCAGACCACACAACTATCCATCG...GGGTTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAGAAGACCAAAAATAATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| CDS-3UTR TCA 90 bp | GCTGGACAATGGAGGTACGCAGAGACCATCAAATTAAGGGAAATAAGCCAAACTGATGGTTTCAAACAGTaGAAAGGGAAATATGGAGGT | + |
|
Preference number: 4 (lower is better) Translates to: AGQWRYAETIKLREISQTDGFKQ*KGKYGG Trigger: ACCTCCATATTTCCCTTTTCACTGTTTGAAACCATC...AGTTTGGCTTATTTCCCTTAATTTGATGGTCTCTGCGTACCTCCATTGTCCAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| CDS-3UTR CCA 90 bp | ATAGTACGTCATCAATTCTTCTTCATCTGTGGCTTTGCTATGGCACCCCATTTCCGATGGATAGTTGTGTaGTCTGAGGATGGTTTCAAA | + |
|
Preference number: 4 (lower is better) Translates to: IVRHQFFFICGFAMAPHFRWIVV*SEDGFK Trigger: TTTGAAACCATCCTCAGACCACACAACTATCCATCG...GAAATGGGGTGCCATAGCAAAGCCACAGATGAAGAAGAATTGATGACGTACTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220680.2 |
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| CDS-3UTR TCA 90 bp | ATAGTACGTCATCAATTCTTCTTCATCTGTGGCTTTGCTATGGCACCCCATTTCGTGGGATGTGATAATTaGGGAAAATGTACCAGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: IVRHQFFFICGFAMAPHFVGCDN*GKCTSS Trigger: TGAACTGGTACATTTTCCTCAATTATCACATCCCAC...GAAATGGGGTGCCATAGCAAAGCCACAGATGAAGAAGAATTGATGACGTACTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220680.2 |
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| CDS-3UTR CCA 90 bp | GCTGGACAATGGAGGTACGCAGAGACCATCAAATTAAGGGAAATAAGCCAAACTATTCCTTCCAATCTGTaGGATGTGATAATTGAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: AGQWRYAETIKLREISQTIPSNL*DVIIEE Trigger: TTCCTCAATTATCACATCCCACAGATTGGAAGGAAT...AGTTTGGCTTATTTCCCTTAATTTGATGGTCTCTGCGTACCTCCATTGTCCAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| CDS-3UTR CCA 90 bp | TCCTTTATTAAAACTATGCAACATTCTCCGTCCTTTCTATCTCCCCAAGCAAGTATTCTTCTTCATCTGTaGCTTTGCTATGGCACCCCA | + |
|
Preference number: 4 (lower is better) Translates to: SFIKTMQHSPSFLSPQASILLHL*LCYGTP Trigger: TGGGGTGCCATAGCAAAGCCACAGATGAAGAAGAAT...ACTTGCTTGGGGAGATAGAAAGGACGGAGAATGTTGCATAGTTTTAATAAAGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| CDS-3UTR GCA 90 bp | TCCTTTATTAAAACTATGCAACATTCTCCGTCCTTTCTATCTCCCCAAGCAAGTCCAAAGAAAATGGCCTaGAAGAGCAGATTAAGGAGT | + |
|
Preference number: 4 (lower is better) Translates to: SFIKTMQHSPSFLSPQASPKKMA*KSRLRS Trigger: ACTCCTTAATCTGCTCTTGCAGGCCATTTTCTTTGG...ACTTGCTTGGGGAGATAGAAAGGACGGAGAATGTTGCATAGTTTTAATAAAGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 ENSMUST00000220680.2 |
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| CDS-3UTR CCA 90 bp | TATCCTTTATTAAAACTATGCAACATTCTCCGTCCTTTCTATCTCCCCAAGCAAATTCTTCTTCATCTGTaGCTTTGCTATGGCACCCCA | + |
|
Preference number: 4 (lower is better) Translates to: YPLLKLCNILRPFYLPKQILLHL*LCYGTP Trigger: TGGGGTGCCATAGCAAAGCCACAGATGAAGAAGAAT...TTGCTTGGGGAGATAGAAAGGACGGAGAATGTTGCATAGTTTTAATAAAGGATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| CDS-3UTR TCA 90 bp | AATTATTATTTTTGGTCTTCTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAAGTGGGATGTGATAATTaGGGAAAATGTACCAGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: NYYFWSSNDRVLLCSPGQVGCDN*GKCTSS Trigger: TGAACTGGTACATTTTCCTCAATTATCACATCCCAC...TTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAGAAGACCAAAAATAATAATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| CDS-3UTR TCA 90 bp | AATTATTATTTTTGGTCTTCTAATGACAGGGTCTTACTCTGCAGTCCAGGGCAAGATGGTTTCAAACAGTaGAAAGGGAAATATGGAGGT | + |
|
Preference number: 4 (lower is better) Translates to: NYYFWSSNDRVLLCSPGQDGFKQ*KGKYGG Trigger: ACCTCCATATTTCCCTTTTCACTGTTTGAAACCATC...TTGCCCTGGACTGCAGAGTAAGACCCTGTCATTAGAAGACCAAAAATAATAATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| CDS-3UTR TCA 90 bp | TTCCATGGCTCTTGGAAAATAGTACGTCATCAATTCTTCTTCATCTGTGGCTTTGATGGTTTCAAACAGTaGAAAGGGAAATATGGAGGT | + |
|
Preference number: 4 (lower is better) Translates to: FHGSWKIVRHQFFFICGFDGFKQ*KGKYGG Trigger: ACCTCCATATTTCCCTTTTCACTGTTTGAAACCATC...AAAGCCACAGATGAAGAAGAATTGATGACGTACTATTTTCCAAGAGCCATGGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220680.2 |
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| CDS-3UTR CCA 90 bp | TATCCTTTATTAAAACTATGCAACATTCTCCGTCCTTTCTATCTCCCCAAGCAACGATGGATAGTTGTGTaGTCTGAGGATGGTTTCAAA | + |
|
Preference number: 4 (lower is better) Translates to: YPLLKLCNILRPFYLPKQRWIVV*SEDGFK Trigger: TTTGAAACCATCCTCAGACCACACAACTATCCATCG...TTGCTTGGGGAGATAGAAAGGACGGAGAATGTTGCATAGTTTTAATAAAGGATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 ENSMUST00000220680.2 |
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| CDS-3UTR TCA 90 bp | AACCAGGAGATCCCAAGAGAAGCTCCCTTTATATCCTTTATTAAAACTATGCAAGTGGGATGTGATAATTaGGGAAAATGTACCAGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: NQEIPREAPFISFIKTMQVGCDN*GKCTSS Trigger: TGAACTGGTACATTTTCCTCAATTATCACATCCCAC...TTGCATAGTTTTAATAAAGGATATAAAGGGAGCTTCTCTTGGGATCTCCTGGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 ENSMUST00000220680.2 |
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| CDS-3UTR CCA 90 bp | AACCAGGAGATCCCAAGAGAAGCTCCCTTTATATCCTTTATTAAAACTATGCAAATTCCTTCCAATCTGTaGGATGTGATAATTGAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: NQEIPREAPFISFIKTMQIPSNL*DVIIEE Trigger: TTCCTCAATTATCACATCCCACAGATTGGAAGGAAT...TTGCATAGTTTTAATAAAGGATATAAAGGGAGCTTCTCTTGGGATCTCCTGGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 ENSMUST00000220680.2 |
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| CDS CCA 90 bp | AGTTCAGAACAAGGAAGTGGTACACGCAAGTGGTTGTTTTCGTCATaGCTTCCCTGGATCGGAGCGACAGTGGCACCCGCTCTGCGTTCA | + |
|
Preference number: 5 (lower is better) Translates to: SSEQGSGTRKWLFSS*LPWIGATVAPALRS Trigger: TGAACGCAGAGCGGGTGCCACTGTCGCTCCGATCCAGGGAAGCCATGACGAAAACAACCACTTGCGTGTACCACTTCCTTGTTCTGAACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| CDS TCA 90 bp | CTTCTTCGATGGATAGTTGTGTGGTCTGAGGATGGTTTCAAACAGTaGAAAGGGAAATATGGAGGTATGCTCCAGAGCGGGCCTGTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: LLRWIVVWSEDGFKQ*KGKYGGMLQSGPVE Trigger: CTCCACAGGCCCGCTCTGGAGCATACCTCCATATTTCCCTTTTCACTGTTTGAAACCATCCTCAGACCACACAACTATCCATCGAAGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220680.2 |
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| CDS CCA 90 bp | AAGAGCAGATTAAGGAGTGTCAAGTACTTGGATCGCCCACCGTCATaGAATTCCCTTAGCTTCTCCTCATTCCTTCCAATCTGTGGGATG | + |
|
Preference number: 5 (lower is better) Translates to: KSRLRSVKYLDRPPS*NSLSFSSFLPICGM Trigger: CATCCCACAGATTGGAAGGAATGAGGAGAAGCTAAGGGAATTCCATGACGGTGGGCGATCCAAGTACTTGACACTCCTTAATCTGCTCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 ENSMUST00000137905.2 ENSMUST00000179758.8 ENSMUST00000220680.2 |
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| CDS CCA 90 bp | ACAAACAGATTAAGGAGTGTCAAGTACTTGGATCGCCCACCGTCATaGAATTCCCTTAGCTTCTCCTCATTCCTTCCAATCTGTGGGATG | + |
|
Preference number: 5 (lower is better) Translates to: TNRLRSVKYLDRPPS*NSLSFSSFLPICGM Trigger: CATCCCACAGATTGGAAGGAATGAGGAGAAGCTAAGGGAATTCCATGACGGTGGGCGATCCAAGTACTTGACACTCCTTAATCTGTTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221691.2 |
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| CDS-3UTR CAA 90 bp | CTGTGGCTTTGCTATGGCACCCCATTTCCAGTGATTGATCTTCTCGCCAAACAGAAGGATGTGACAAACTaGATGTCTTTCCTTCCGATG | + |
|
Preference number: 5 (lower is better) Translates to: LWLCYGTPFPVIDLLAKQKDVTN*MSFLPM Trigger: CATCGGAAGGAAAGACATCAAGTTTGTCACATCCTT...CTGTTTGGCGAGAAGATCAATCACTGGAAATGGGGTGCCATAGCAAAGCCACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220680.2 |
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| CDS TCA 90 bp | CCCTTAGCTTCTCCTCATTCCTTCCAATCTGTGGGATGTGATAATTaGGGAAAATGTACCAGTTCAGAACAAGGAAGTGGTACACGCAAG | + |
|
Preference number: 5 (lower is better) Translates to: PLASPHSFQSVGCDN*GKCTSSEQGSGTRK Trigger: CTTGCGTGTACCACTTCCTTGTTCTGAACTGGTACATTTTCCTCAATTATCACATCCCACAGATTGGAAGGAATGAGGAGAAGCTAAGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 ENSMUST00000137905.2 ENSMUST00000179758.8 ENSMUST00000220680.2 ENSMUST00000221691.2 |
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| CDS TCA 90 bp | CTTCTTCGATGGATAGTTGTGTGGTCTGAGGATGGTTTCAAACAGTaGAAAGGGAAATATGGAGGTATGCATTGCGTGGTTAACCCATGC | + |
|
Preference number: 5 (lower is better) Translates to: LLRWIVVWSEDGFKQ*KGKYGGMHCVVNPC Trigger: GCATGGGTTAACCACGCAATGCATACCTCCATATTTCCCTTTTCACTGTTTGAAACCATCCTCAGACCACACAACTATCCATCGAAGAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 ENSMUST00000137905.2 ENSMUST00000179758.8 ENSMUST00000223337.2 |
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| CDS-3UTR CAA 90 bp | GGGGTAGACTTCCCACCACTTGTTATAAATTATTCTCACTGCCCCAGCGAGTTTAAGGATGTGACAAACTaGATGTCTTTCCTTCCGATG | + |
|
Preference number: 5 (lower is better) Translates to: GVDFPPLVINYSHCPSEFKDVTN*MSFLPM Trigger: CATCGGAAGGAAAGACATCAAGTTTGTCACATCCTT...AAACTCGCTGGGGCAGTGAGAATAATTTATAACAAGTGGTGGGAAGTCTACCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| CDS-3UTR CAA 90 bp | GATGTCAGCCTTTTAGAAAACCAGGAGATCCCAAGAGAAGCTCCCTTTATATCCAAGGATGTGACAAACTaGATGTCTTTCCTTCCGATG | + |
|
Preference number: 5 (lower is better) Translates to: DVSLLENQEIPREAPFISKDVTN*MSFLPM Trigger: CATCGGAAGGAAAGACATCAAGTTTGTCACATCCTT...GGATATAAAGGGAGCTTCTCTTGGGATCTCCTGGTTTTCTAAAAGGCTGACATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 |
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| CDS TCA 72 bp | ATCGGAGCGACAGTGGCACCCGCTCTGCGTTCACTCTaGGTCCTGGGTGTCCCAGCTGCCCTCTGTTCAGGC | + |
|
Preference number: 6 (lower is better) Translates to: IGATVAPALRSL*VLGVPAALCSG Trigger: GCCTGAACAGAGGGCAGCTGGGACACCCAGGACTCAGAGTGAACGCAGAGCGGGTGCCACTGTCGCTCCGAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| CDS CCA 72 bp | AAGGGAAATATGGAGGTATGCTCCAGAGCGGGCCTGTaGAGGGCGAGCTCCCTGGCTCCCGGGCAGATGAGG | + |
|
Preference number: 6 (lower is better) Translates to: KGNMEVCSRAGL*RASSLAPGQMR Trigger: CCTCATCTGCCCGGGAGCCAGGGAGCTCGCCCTCCACAGGCCCGCTCTGGAGCATACCTCCATATTTCCCTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220680.2 |
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| CDS TCA 72 bp | GCCTGTGGAGGGCGAGCTCCCTGGCTCCCGGGCAGATaGGGTAATAGCCTCTCGGTCTGTAAAACTCGAAGT | + |
|
Preference number: 6 (lower is better) Translates to: ACGGRAPWLPGR*GNSLSVCKTRS Trigger: ACTTCGAGTTTTACAGACCGAGAGGCTATTACCTCATCTGCCCGGGAGCCAGGGAGCTCGCCCTCCACAGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220680.2 |
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| CDS CCA 72 bp | CAAGGAAGTGGTACACGCAAGTGGTTGTTTTCGTCATaGCTTCCCTGGATCGGAGCGACAGTGGCACCCGCT | + |
|
Preference number: 6 (lower is better) Translates to: QGSGTRKWLFSS*LPWIGATVAPA Trigger: AGCGGGTGCCACTGTCGCTCCGATCCAGGGAAGCCATGACGAAAACAACCACTTGCGTGTACCACTTCCTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| CDS CAA 90 bp | GGAAAATGTACCAGTTCAGAACAAGGAAGTGGTACACGCAAGTGGTaGTTTTCGTCATGGCTTCCCTGGATCGGAGCGACAGTGGCACCC | + |
|
Preference number: 6 (lower is better) Translates to: GKCTSSEQGSGTRKW*FSSWLPWIGATVAP Trigger: GGGTGCCACTGTCGCTCCGATCCAGGGAAGCCATGACGAAAACAACCACTTGCGTGTACCACTTCCTTGTTCTGAACTGGTACATTTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| CDS CCA 72 bp | TGTACCAGTTCAGAACAAGGAAGTGGTACACGCAAGTaGTTGTTTTCGTCATGGCTTCCCTGGATCGGAGCG | + |
|
Preference number: 6 (lower is better) Translates to: CTSSEQGSGTRK*LFSSWLPWIGA Trigger: CGCTCCGATCCAGGGAAGCCATGACGAAAACAACCACTTGCGTGTACCACTTCCTTGTTCTGAACTGGTACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| CDS CAA 72 bp | ACCAGTTCAGAACAAGGAAGTGGTACACGCAAGTGGTaGTTTTCGTCATGGCTTCCCTGGATCGGAGCGACA | + |
|
Preference number: 6 (lower is better) Translates to: TSSEQGSGTRKW*FSSWLPWIGAT Trigger: TGTCGCTCCGATCCAGGGAAGCCATGACGAAAACAACCACTTGCGTGTACCACTTCCTTGTTCTGAACTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072012.10 |
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| CDS CAA 72 bp | ATGGCCTGCAAGAGCAGATTAAGGAGTGTCAAGTACTaGGATCGCCCACCGTCATGGAATTCCCTTAGCTTC | + |
|
Preference number: 6 (lower is better) Translates to: MACKSRLRSVKY*DRPPSWNSLSF Trigger: GAAGCTAAGGGAATTCCATGACGGTGGGCGATCCAAGTACTTGACACTCCTTAATCTGCTCTTGCAGGCCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 ENSMUST00000137905.2 ENSMUST00000179758.8 ENSMUST00000220680.2 |
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| CDS GCA 72 bp | CGAAGTTGTGGTACTTATCATTGCGTGGTTAACCCATaGTGGGAAGAAGTCATCCAAGCCCTTGGGGTAAAC | + |
|
Preference number: 6 (lower is better) Translates to: RSCGTYHCVVNP*WEEVIQALGVN Trigger: GTTTACCCCAAGGGCTTGGATGACTTCTTCCCAGCATGGGTTAACCACGCAATGATAAGTACCACAACTTCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220680.2 |
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| CDS CCA 72 bp | TTAAGGAGTGTCAAGTACTTGGATCGCCCACCGTCATaGAATTCCCTTAGCTTCTCCTCATTCCTTCCAATC | + |
|
Preference number: 6 (lower is better) Translates to: LRSVKYLDRPPS*NSLSFSSFLPI Trigger: GATTGGAAGGAATGAGGAGAAGCTAAGGGAATTCCATGACGGTGGGCGATCCAAGTACTTGACACTCCTTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 ENSMUST00000137905.2 ENSMUST00000179758.8 ENSMUST00000220680.2 ENSMUST00000221691.2 |
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| CDS CAA 90 bp | GTCCAGAATACCAAGAACACAAACAGATTAAGGAGTGTCAAGTACTaGGATCGCCCACCGTCATGGAATTCCCTTAGCTTCTCCTCATTC | + |
|
Preference number: 6 (lower is better) Translates to: VQNTKNTNRLRSVKY*DRPPSWNSLSFSSF Trigger: GAATGAGGAGAAGCTAAGGGAATTCCATGACGGTGGGCGATCCAAGTACTTGACACTCCTTAATCTGTTTGTGTTCTTGGTATTCTGGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221691.2 |
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| CDS CCA 72 bp | TCTGTAAAACTCGAAGTTGTGGTACTTATCATTGCGTaGTTAACCCATGCTGGGAAGAAGTCATCCAAGCCC | + |
|
Preference number: 6 (lower is better) Translates to: SVKLEVVVLIIA*LTHAGKKSSKP Trigger: GGGCTTGGATGACTTCTTCCCAGCATGGGTTAACCACGCAATGATAAGTACCACAACTTCGAGTTTTACAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220680.2 |
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| CDS CAA 72 bp | ACCAAGAACACAAACAGATTAAGGAGTGTCAAGTACTaGGATCGCCCACCGTCATGGAATTCCCTTAGCTTC | + |
|
Preference number: 6 (lower is better) Translates to: TKNTNRLRSVKY*DRPPSWNSLSF Trigger: GAAGCTAAGGGAATTCCATGACGGTGGGCGATCCAAGTACTTGACACTCCTTAATCTGTTTGTGTTCTTGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221691.2 |
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| CDS GCA 72 bp | TCGGTCTGTAAAACTCGAAGTTGTGGTACTTATCATTaGGTGGTTAACCCATGCTGGGAAGAAGTCATCCAA | + |
|
Preference number: 6 (lower is better) Translates to: SVCKTRSCGTYH*VVNPCWEEVIQ Trigger: TTGGATGACTTCTTCCCAGCATGGGTTAACCACGCAATGATAAGTACCACAACTTCGAGTTTTACAGACCGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220680.2 |
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| CDS TCA 72 bp | TCTCCTCATTCCTTCCAATCTGTGGGATGTGATAATTaGGGAAAATGTACCAGTTCAGAACAAGGAAGTGGT | + |
|
Preference number: 6 (lower is better) Translates to: SPHSFQSVGCDN*GKCTSSEQGSG Trigger: ACCACTTCCTTGTTCTGAACTGGTACATTTTCCTCAATTATCACATCCCACAGATTGGAAGGAATGAGGAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000072012.10 ENSMUST00000121404.8 ENSMUST00000137905.2 ENSMUST00000179758.8 ENSMUST00000220680.2 ENSMUST00000221691.2 |
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