RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ADRB1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035283

Ensembl transcript IDs: ENSMUST00000038949.6

Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCCTGGCTAATTATCACCGGCCCCGCCCCCACACCAAACCTGAGCTaGATACTTAGGTTCCTAGGTGTGGAACCGGAAAGCCAGGTGATA +
Preference number: 1 (lower is better)
Translates to: SWLIITGPAPTPNLS*ILRFLGVEPESQVI
Trigger: TATCACCTGGCTTTCCGGTTCCACACCTAGGAACCTAAGTATTCAGCTCAGGTTTGGTGTGGGGGCGGGGCCGGTGATAATTAGCCAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
3UTR TCA 90 bp GCAATAATCTCAACTGTTTCCTTTTTGTTCTGTCCTATCTTTAGTTaGCAGAGTCACATGTCACAGAGAGAGACTCAGCGCCTGGTCCTT +
Preference number: 1 (lower is better)
Translates to: AIISTVSFLFCPIFS*QSHMSQRETQRLVL
Trigger: AAGGACCAGGCGCTGAGTCTCTCTCTGTGACATGTGACTCTGTCAACTAAAGATAGGACAGAACAAAAAGGAAACAGTTGAGATTATTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
3UTR GCA 90 bp TTTCTCGAAACCAGATTTGTCTGTTTCGCATCCTTCTTTTCCCTTTaGTTTAAGAACAGGAGACACCAGTACTCCGGAATTAGTATGCAA +
Preference number: 1 (lower is better)
Translates to: FLETRFVCFASFFSL*FKNRRHQYSGISMQ
Trigger: TTGCATACTAATTCCGGAGTACTGGTGTCTCCTGTTCTTAAAGCAAAGGGAAAAGAAGGATGCGAAACAGACAAATCTGGTTTCGAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
3UTR-3UTR CCA 90 bp CTCCCAACTCCTCCTAAACTTTCCTTTTTGCGCAAACGCTCGGTCCGGGGCTTTATCTCCTCTCTCCCCTaGGGAGCGGCTCAGGGGCGC +
Preference number: 2 (lower is better)
Translates to: LPTPPKLSFLRKRSVRGFISSLP*GAAQGR
Trigger: GCGCCCCTGAGCCGCTCCCCAGGGGAGAGAGGAGAT...AAAGCCCCGGACCGAGCGTTTGCGCAAAAAGGAAAGTTTAGGAGGAGTTGGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
3UTR-3UTR CCA 90 bp AGTGAGGTAGAGGACCCACAGCAGGACCACCGAGGCGCGCAGGGCACAAGGTTTGATTCGATAGATCTGTaGGCTTTGCATTCACCTGCT +
Preference number: 2 (lower is better)
Translates to: SEVEDPQQDHRGAQGTRFDSIDL*ALHSPA
Trigger: AGCAGGTGAATGCAAAGCCCACAGATCTATCGAATC...AAACCTTGTGCCCTGCGCGCCTCGGTGGTCCTGCTGTGGGTCCTCTACCTCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
3UTR-3UTR CCA 90 bp CAACTGTTTCCTTTTTGTTCTGTCCTATCTTTAGTTGACAGAGTCACATGTCACTCCAGCCCGGGACTATaGGGAGCGGCGTCCGTGCGC +
Preference number: 2 (lower is better)
Translates to: QLFPFCSVLSLVDRVTCHSSPGL*GAASVR
Trigger: GCGCACGGACGCCGCTCCCCATAGTCCCGGGCTGGA...GTGACATGTGACTCTGTCAACTAAAGATAGGACAGAACAAAAAGGAAACAGTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
3UTR-3UTR GCA 90 bp TTTGCCGTCTTTGTTTTTAGCCACATGTGCAATAATCTCAACTGTTTCCTTTTTGGGGAGCGGCGTCCGTaGGCCCAGAGAGCCTGGCTC +
Preference number: 2 (lower is better)
Translates to: FAVFVFSHMCNNLNCFLFGERRP*AQRAWL
Trigger: GAGCCAGGCTCTCTGGGCGCACGGACGCCGCTCCCC...AAAAAGGAAACAGTTGAGATTATTGCACATGTGGCTAAAAACAAAGACGGCAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
3UTR-3UTR TCA 90 bp AAGTCTTTCTATCTTGCTGTGCAATATGCACAGAGTGAGGTAGAGGACCCACAGACCTGCTTTCGGTCTTaGGTAAACAGAGATCTCCTC +
Preference number: 2 (lower is better)
Translates to: KSFYLAVQYAQSEVEDPQTCFRS*VNRDLL
Trigger: GAGGAGATCTCTGTTTACTCAAGACCGAAAGCAGGT...CTGTGGGTCCTCTACCTCACTCTGTGCATATTGCACAGCAAGATAGAAAGACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
3UTR-3UTR GCA 90 bp TCGCATCCTTCTTTTCCCTTTGCTTTAAGAACAGGAGACACCAGTACTCCGGAATTCCACTCGGGTCCTTaGAGAAAGTGTCAAAACCCA +
Preference number: 2 (lower is better)
Translates to: SHPSFPFALRTGDTSTPEFHSGP*RKCQNP
Trigger: TGGGTTTTGACACTTTCTGCAAGGACCCGAGTGGAA...TTCCGGAGTACTGGTGTCTCCTGTTCTTAAAGCAAAGGGAAAAGAAGGATGCGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
3UTR CAA 90 bp AAGCAAGGTGAACCGTGCTCCACACATAGTTTCTCGAAACCAGATTaGTCTGTTTCGCATCCTTCTTTTCCCTTTGCTTTAAGAACAGGA +
Preference number: 2 (lower is better)
Translates to: KQGEPCSTHSFSKPD*SVSHPSFPFALRTG
Trigger: TCCTGTTCTTAAAGCAAAGGGAAAAGAAGGATGCGAAACAGACAAATCTGGTTTCGAGAAACTATGTGTGGAGCACGGTTCACCTTGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
3UTR-3UTR TCA 90 bp TTTGCCGTCTTTGTTTTTAGCCACATGTGCAATAATCTCAACTGTTTCCTTTTTCCCCCACACCAAACCTaGGCTGAATACTTAGGTTCC +
Preference number: 2 (lower is better)
Translates to: FAVFVFSHMCNNLNCFLFPPHQT*AEYLGS
Trigger: GGAACCTAAGTATTCAGCTCAGGTTTGGTGTGGGGG...AAAAAGGAAACAGTTGAGATTATTGCACATGTGGCTAAAAACAAAGACGGCAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
3UTR-3UTR TCA 90 bp CAACTGTTTCCTTTTTGTTCTGTCCTATCTTTAGTTGACAGAGTCACATGTCACACACCAAACCTGAGCTaGATACTTAGGTTCCTAGGT +
Preference number: 2 (lower is better)
Translates to: QLFPFCSVLSLVDRVTCHTPNLS*ILRFLG
Trigger: ACCTAGGAACCTAAGTATTCAGCTCAGGTTTGGTGT...GTGACATGTGACTCTGTCAACTAAAGATAGGACAGAACAAAAAGGAAACAGTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
3UTR-3UTR CCA 90 bp TTTGCCGTCTTTGTTTTTAGCCACATGTGCAATAATCTCAACTGTTTCCTTTTTGAGAGACTCAGCGCCTaGTCCTTCCAACTAGTATTG +
Preference number: 2 (lower is better)
Translates to: FAVFVFSHMCNNLNCFLFERLSA*SFQLVL
Trigger: CAATACTAGTTGGAAGGACCAGGCGCTGAGTCTCTC...AAAAAGGAAACAGTTGAGATTATTGCACATGTGGCTAAAAACAAAGACGGCAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
3UTR TCA 72 bp ATTATCACCGGCCCCGCCCCCACACCAAACCTGAGCTaGATACTTAGGTTCCTAGGTGTGGAACCGGAAAGC +
Preference number: 3 (lower is better)
Translates to: IITGPAPTPNLS*ILRFLGVEPES
Trigger: GCTTTCCGGTTCCACACCTAGGAACCTAAGTATTCAGCTCAGGTTTGGTGTGGGGGCGGGGCCGGTGATAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
3UTR-3UTR CAA 90 bp AAGTCTTTCTATCTTGCTGTGCAATATGCACAGAGTGAGGTAGAGGACCCACAGATAGATCTGTGGGCTTaGCATTCACCTGCTTTCGGT +
Preference number: 3 (lower is better)
Translates to: KSFYLAVQYAQSEVEDPQIDLWA*HSPAFG
Trigger: ACCGAAAGCAGGTGAATGCAAAGCCCACAGATCTAT...CTGTGGGTCCTCTACCTCACTCTGTGCATATTGCACAGCAAGATAGAAAGACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
3UTR-3UTR CAA 90 bp CAACTGTTTCCTTTTTGTTCTGTCCTATCTTTAGTTGACAGAGTCACATGTCACACAAGTCTTTCTATCTaGCTGTGCAATATGCACAGA +
Preference number: 3 (lower is better)
Translates to: QLFPFCSVLSLVDRVTCHTSLSI*LCNMHR
Trigger: TCTGTGCATATTGCACAGCAAGATAGAAAGACTTGT...GTGACATGTGACTCTGTCAACTAAAGATAGGACAGAACAAAAAGGAAACAGTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR CCA 90 bp GCGGGCTCTCTTCCTCTAGGGATGCAGAGCCCGTGTCCAGCCCGGGACTATGGGGCGCTGAGCCCTCGCTaGCTGGAGGCAGCAGCGAGG +
Preference number: 4 (lower is better)
Translates to: AGSLPLGMQSPCPARDYGALSPR*LEAAAR
Trigger: CCTCGCTGCTGCCTCCAGCCAGCGAGGGCTCAGCGC...CCCATAGTCCCGGGCTGGACACGGGCTCTGCATCCCTAGAGGAAGAGAGCCCGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR GCA 90 bp GCGGGCTCTCTTCCTCTAGGGATGCAGAGCCCGTGTCCAGCCCGGGACTATGGGAGATGGCCCACACTGTaGACACGAGGGCCCGCGCTC +
Preference number: 4 (lower is better)
Translates to: AGSLPLGMQSPCPARDYGRWPTL*TRGPAL
Trigger: GAGCGCGGGCCCTCGTGTGCACAGTGTGGGCCATCT...CCCATAGTCCCGGGCTGGACACGGGCTCTGCATCCCTAGAGGAAGAGAGCCCGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR GCA 90 bp GCGGGCTCTCTTCCTCTAGGGATGCAGAGCCCGTGTCCAGCCCGGGACTATGGGTGGTTGTCCCGCCGTTaGAGCCGGTCCAGGGCTCCA +
Preference number: 4 (lower is better)
Translates to: AGSLPLGMQSPCPARDYGWLSRR*SRSRAP
Trigger: TGGAGCCCTGGACCGGCTGCAACGGCGGGACAACCA...CCCATAGTCCCGGGCTGGACACGGGCTCTGCATCCCTAGAGGAAGAGAGCCCGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR CCA 90 bp GCGGGCTCTCTTCCTCTAGGGATGCAGAGCCCGTGTCCAGCCCGGGACTATGGGAAGCCTTCACCACGTTaGCCAGGAAGAAGGGCAGCC +
Preference number: 4 (lower is better)
Translates to: AGSLPLGMQSPCPARDYGKPSPR*PGRRAA
Trigger: GGCTGCCCTTCTTCCTGGCCAACGTGGTGAAGGCTT...CCCATAGTCCCGGGCTGGACACGGGCTCTGCATCCCTAGAGGAAGAGAGCCCGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR GCA 90 bp CTCCCAACTCCTCCTAAACTTTCCTTTTTGCGCAAACGCTCGGTCCGGGGCTTTGCGACGGCCGCCGCTTaGTGGAGCGCCCGTTGGCCA +
Preference number: 4 (lower is better)
Translates to: LPTPPKLSFLRKRSVRGFATAAA*WSARWP
Trigger: TGGCCAACGGGCGCTCCAGCAAGCGGCGGCCGTCGC...AAAGCCCCGGACCGAGCGTTTGCGCAAAAAGGAAAGTTTAGGAGGAGTTGGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR CCA 90 bp GCGGGCTCTCTTCCTCTAGGGATGCAGAGCCCGTGTCCAGCCCGGGACTATGGGTTCTTTACCTGTTTTTaGGCCTCGCGGAACACCCGC +
Preference number: 4 (lower is better)
Translates to: AGSLPLGMQSPCPARDYGFFTCF*ASRNTR
Trigger: GCGGGTGTTCCGCGAGGCCCAAAAACAGGTAAAGAA...CCCATAGTCCCGGGCTGGACACGGGCTCTGCATCCCTAGAGGAAGAGAGCCCGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR CCA 90 bp CTCCCAACTCCTCCTAAACTTTCCTTTTTGCGCAAACGCTCGGTCCGGGGCTTTTCCGAGGAGAAGCCCTaGCGCCCCGGCTCGTCCAGG +
Preference number: 4 (lower is better)
Translates to: LPTPPKLSFLRKRSVRGFSEEKP*RPGSSR
Trigger: CCTGGACGAGCCGGGGCGCCAGGGCTTCTCCTCGGA...AAAGCCCCGGACCGAGCGTTTGCGCAAAAAGGAAAGTTTAGGAGGAGTTGGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR TCA 90 bp ACACGAAAGGCCGAACCTCAGAGAGAAAGGAACTCAAGACAAGCCAGTAAGCCACTGCGACAGCGGCGCTaGGCCCTCGCTGGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: TRKAEPQRERNSRQASKPLRQRR*ALAGWR
Trigger: CCTCCAGCCAGCGAGGGCTCAGCGCCGCTGTCGCAG...TGGCTTACTGGCTTGTCTTGAGTTCCTTTCTCTCTGAGGTTCGGCCTTTCGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR GCA 90 bp CTCCCAACTCCTCCTAAACTTTCCTTTTTGCGCAAACGCTCGGTCCGGGGCTTTCGGCGGACGACAGGTTaGAGGGTTCGGAGGCGCCCA +
Preference number: 4 (lower is better)
Translates to: LPTPPKLSFLRKRSVRGFRRTTG*RVRRRP
Trigger: TGGGCGCCTCCGAACCCTGCAACCTGTCGTCCGCCG...AAAGCCCCGGACCGAGCGTTTGCGCAAAAAGGAAAGTTTAGGAGGAGTTGGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR GCA 90 bp ACACGAAAGGCCGAACCTCAGAGAGAAAGGAACTCAAGACAAGCCAGTAAGCCACCCGCGGTCCACTGCTaGGACAGCGGCGCTGAGCCC +
Preference number: 4 (lower is better)
Translates to: TRKAEPQRERNSRQASKPPAVHC*DSGAEP
Trigger: GGGCTCAGCGCCGCTGTCGCAGCAGTGGACCGCGGG...TGGCTTACTGGCTTGTCTTGAGTTCCTTTCTCTCTGAGGTTCGGCCTTTCGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR GCA 90 bp CGGTCCGGGGCTTTTCTGTACGTCTCGGATGATTCGATAGATCTGTGGGCTTTGAGGTTGGTGAGCGTCTaGAGCCGCGGGGTCTTGGCG +
Preference number: 4 (lower is better)
Translates to: RSGAFLYVSDDSIDLWALRLVSV*SRGVLA
Trigger: CGCCAAGACCCCGCGGCTGCAGACGCTCACCAACCT...CAAAGCCCACAGATCTATCGAATCATCCGAGACGTACAGAAAAGCCCCGGACCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR GCA 90 bp ACACGAAAGGCCGAACCTCAGAGAGAAAGGAACTCAAGACAAGCCAGTAAGCCAGGCGCTGGAAAGCCTTaGGGAAGTCGGGGCTGCGGC +
Preference number: 4 (lower is better)
Translates to: TRKAEPQRERNSRQASKPGAGKP*GSRGCG
Trigger: GCCGCAGCCCCGACTTCCGCAAGGCTTTCCAGCGCC...TGGCTTACTGGCTTGTCTTGAGTTCCTTTCTCTCTGAGGTTCGGCCTTTCGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR CCA 90 bp ACACGAAAGGCCGAACCTCAGAGAGAAAGGAACTCAAGACAAGCCAGTAAGCCAGGCCCCACACCACGATaGTGGCCCCGAAAGGCACCA +
Preference number: 4 (lower is better)
Translates to: TRKAEPQRERNSRQASKPGPTPR*WPRKAP
Trigger: TGGTGCCTTTCGGGGCCACCATCGTGGTGTGGGGCC...TGGCTTACTGGCTTGTCTTGAGTTCCTTTCTCTCTGAGGTTCGGCCTTTCGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR CCA 90 bp CGGTCCGGGGCTTTTCTGTACGTCTCGGATGATTCGATAGATCTGTGGGCTTTGGGCACCAGGTCGCGGTaGAAAGCCTTCACCACGTTG +
Preference number: 4 (lower is better)
Translates to: RSGAFLYVSDDSIDLWALGTRSR*KAFTTL
Trigger: CAACGTGGTGAAGGCTTTCCACCGCGACCTGGTGCC...CAAAGCCCACAGATCTATCGAATCATCCGAGACGTACAGAAAAGCCCCGGACCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR CCA 90 bp CGGTCCGGGGCTTTTCTGTACGTCTCGGATGATTCGATAGATCTGTGGGCTTTGCAGCAGAGCAGGCGCTaGAAAGCCTTGCGGAAGTCG +
Preference number: 4 (lower is better)
Translates to: RSGAFLYVSDDSIDLWALQQSRR*KALRKS
Trigger: CGACTTCCGCAAGGCTTTCCAGCGCCTGCTCTGCTG...CAAAGCCCACAGATCTATCGAATCATCCGAGACGTACAGAAAAGCCCCGGACCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR CCA 90 bp CATCCTTCTTTTCCCTTTGCTTTAAGAACAGGAGACACCAGTACTCCGGAATTAACGGCCGCCGCTTGCTaGAGCGCCCGTTGGCCAGCG +
Preference number: 4 (lower is better)
Translates to: HPSFPFALRTGDTSTPELTAAAC*SARWPA
Trigger: CGCTGGCCAACGGGCGCTCCAGCAAGCGGCGGCCGT...TAATTCCGGAGTACTGGTGTCTCCTGTTCTTAAAGCAAAGGGAAAAGAAGGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR GCA 90 bp ATACTAAGCCACACTCTCCCAACTCCTCCTAAACTTTCCTTTTTGCGCAAACGCTCGGCCCGCCACCAGTaGATGAGGATGGGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: ILSHTLPTPPKLSFLRKRSARHQ*MRMGRK
Trigger: CTTCCTGCCCATCCTCATGCACTGGTGGCGGGCCGA...GCGTTTGCGCAAAAAGGAAAGTTTAGGAGGAGTTGGGAGAGTGTGGCTTAGTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR GCA 90 bp AAGTCTTTCTATCTTGCTGTGCAATATGCACAGAGTGAGGTAGAGGACCCACAGGTCTTGAGCGCCTTCTaGTCGCGCAGAGCCACGAGG +
Preference number: 4 (lower is better)
Translates to: KSFYLAVQYAQSEVEDPQVLSAF*SRRATR
Trigger: CCTCGTGGCTCTGCGCGAGCAGAAGGCGCTCAAGAC...CTGTGGGTCCTCTACCTCACTCTGTGCATATTGCACAGCAAGATAGAAAGACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR CCA 90 bp ACACGAAAGGCCGAACCTCAGAGAGAAAGGAACTCAAGACAAGCCAGTAAGCCACGAAATCGCAGCACTTaGGGTCGTTGTAGCAGCGGC +
Preference number: 4 (lower is better)
Translates to: TRKAEPQRERNSRQASKPRNRST*GRCSSG
Trigger: GCCGCTGCTACAACGACCCCAAGTGCTGCGATTTCG...TGGCTTACTGGCTTGTCTTGAGTTCCTTTCTCTCTGAGGTTCGGCCTTTCGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR CCA 90 bp CATCCTTCTTTTCCCTTTGCTTTAAGAACAGGAGACACCAGTACTCCGGAATTAGCAGCCGCGGGGTCTTaGCGATGGCCACGATCACCA +
Preference number: 4 (lower is better)
Translates to: HPSFPFALRTGDTSTPELAAAGS*RWPRSP
Trigger: TGGTGATCGTGGCCATCGCCAAGACCCCGCGGCTGC...TAATTCCGGAGTACTGGTGTCTCCTGTTCTTAAAGCAAAGGGAAAAGAAGGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR TCA 90 bp TCGCATCCTTCTTTTCCCTTTGCTTTAAGAACAGGAGACACCAGTACTCCGGAACGTAGGCCCTGTTGGTaGCGAAATCGCAGCACTTGG +
Preference number: 4 (lower is better)
Translates to: SHPSFPFALRTGDTSTPERRPCW*RNRSTW
Trigger: CCAAGTGCTGCGATTTCGTCACCAACAGGGCCTACG...TTCCGGAGTACTGGTGTCTCCTGTTCTTAAAGCAAAGGGAAAAGAAGGATGCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR TCA 90 bp CAACTGTTTCCTTTTTGTTCTGTCCTATCTTTAGTTGACAGAGTCACATGTCACAGCGAAAGGGCGACGTaGTGGCGAGGTAGCGGTCCA +
Preference number: 4 (lower is better)
Translates to: QLFPFCSVLSLVDRVTCHSERAT*WRGSGP
Trigger: TGGACCGCTACCTCGCCATCACGTCGCCCTTTCGCT...GTGACATGTGACTCTGTCAACTAAAGATAGGACAGAACAAAAAGGAAACAGTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR CCA 90 bp CAACTGTTTCCTTTTTGTTCTGTCCTATCTTTAGTTGACAGAGTCACATGTCACGCGGGGTCTTGGCGATaGCCACGATCACCAGCACGT +
Preference number: 4 (lower is better)
Translates to: QLFPFCSVLSLVDRVTCHAGSWR*PRSPAR
Trigger: ACGTGCTGGTGATCGTGGCCATCGCCAAGACCCCGC...GTGACATGTGACTCTGTCAACTAAAGATAGGACAGAACAAAAAGGAAACAGTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR TCA 90 bp CCTTTTTGTTCTGTCCTATCTTTAGTTGACAGAGTCACATGTCACAGAGAGAGAGGTACACGAAGGCCATaGTGCACAGGGGCACGTAGA +
Preference number: 4 (lower is better)
Translates to: PFCSVLSLVDRVTCHRERGTRRP*CTGARR
Trigger: TCTACGTGCCCCTGTGCATCATGGCCTTCGTGTACC...TCTCTCTCTGTGACATGTGACTCTGTCAACTAAAGATAGGACAGAACAAAAAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR TCA 90 bp TTTGCCGTCTTTGTTTTTAGCCACATGTGCAATAATCTCAACTGTTTCCTTTTTCGTAGCCCAGCCAGTTaGAGAAGACGAAGAGGCGAT +
Preference number: 4 (lower is better)
Translates to: FAVFVFSHMCNNLNCFLFRSPAS*RRRRGD
Trigger: ATCGCCTCTTCGTCTTCTTCAACTGGCTGGGCTACG...AAAAAGGAAACAGTTGAGATTATTGCACATGTGGCTAAAAACAAAGACGGCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
3UTR CAA 72 bp GAACCGTGCTCCACACATAGTTTCTCGAAACCAGATTaGTCTGTTTCGCATCCTTCTTTTCCCTTTGCTTTA +
Preference number: 4 (lower is better)
Translates to: EPCSTHSFSKPD*SVSHPSFPFAL
Trigger: TAAAGCAAAGGGAAAAGAAGGATGCGAAACAGACAAATCTGGTTTCGAGAAACTATGTGTGGAGCACGGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS CCA 90 bp GCAGCGAGGCGGGAGGCGACGCGAGCACCAGCAGCCGCGCCGCGGTaGCCGCACCGTCGGGCAGCGGCGCGGCGGACGACAGGTTGCAGG +
Preference number: 5 (lower is better)
Translates to: AARREATRAPAAAPR*PHRRAAARRTTGCR
Trigger: CCTGCAACCTGTCGTCCGCCGCGCCGCTGCCCGACGGTGCGGCCACCGCGGCGCGGCTGCTGGTGCTCGCGTCGCCTCCCGCCTCGCTGC
80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS GCA 90 bp GCGCCTTCTGCTCGCGCAGAGCCACGAGGCGCGACGGCCGCCGCTTaGTGGAGCGCCCGTTGGCCAGCGAGTCTGCGGGGCGCGGTGGCC +
Preference number: 5 (lower is better)
Translates to: APSARAEPRGATAAA*WSARWPASLRGAVA
Trigger: GGCCACCGCGCCCCGCAGACTCGCTGGCCAACGGGCGCTCCAGCAAGCGGCGGCCGTCGCGCCTCGTGGCTCTGCGCGAGCAGAAGGCGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS CCA 90 bp GCAGAGCCACGAGGCGCGACGGCCGCCGCTTGCTGGAGCGCCCGTTaGCCAGCGAGTCTGCGGGGCGCGGTGGCCCAGGTGACGGCGAGG +
Preference number: 5 (lower is better)
Translates to: AEPRGATAAACWSAR*PASLRGAVAQVTAR
Trigger: CCTCGCCGTCACCTGGGCCACCGCGCCCCGCAGACTCGCTGGCCAACGGGCGCTCCAGCAAGCGGCGGCCGTCGCGCCTCGTGGCTCTGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS CCA 90 bp CCTTCTGCTCGCGCAGAGCCACGAGGCGCGACGGCCGCCGCTTGCTaGAGCGCCCGTTGGCCAGCGAGTCTGCGGGGCGCGGTGGCCCAG +
Preference number: 5 (lower is better)
Translates to: PSARAEPRGATAAAC*SARWPASLRGAVAQ
Trigger: CTGGGCCACCGCGCCCCGCAGACTCGCTGGCCAACGGGCGCTCCAGCAAGCGGCGGCCGTCGCGCCTCGTGGCTCTGCGCGAGCAGAAGG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS CCA 90 bp AGCCCTGGCGCCCCGGCTCGTCCAGGCTCGAATCGCTGTCCACAGTaGTTGTCCCGCCGTTGCAGCCGGTCCAGGGCTCCAGCAGGCGCG +
Preference number: 5 (lower is better)
Translates to: SPGAPARPGSNRCPQ*LSRRCSRSRAPAGA
Trigger: CGCGCCTGCTGGAGCCCTGGACCGGCTGCAACGGCGGGACAACCACTGTGGACAGCGATTCGAGCCTGGACGAGCCGGGGCGCCAGGGCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS GCA 90 bp GCTCGTCCAGGCTCGAATCGCTGTCCACAGTGGTTGTCCCGCCGTTaGAGCCGGTCCAGGGCTCCAGCAGGCGCGCCGGTGGGGTGGTCC +
Preference number: 5 (lower is better)
Translates to: ARPGSNRCPQWLSRR*SRSRAPAGAPVGWS
Trigger: GGACCACCCCACCGGCGCGCCTGCTGGAGCCCTGGACCGGCTGCAACGGCGGGACAACCACTGTGGACAGCGATTCGAGCCTGGACGAGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR CAA 90 bp GCGGGCTCTCTTCCTCTAGGGATGCAGAGCCCGTGTCCAGCCCGGGACTATGGGGCGGCGGACGACAGGTaGCAGGGTTCGGAGGCGCCC +
Preference number: 5 (lower is better)
Translates to: AGSLPLGMQSPCPARDYGAADDR*QGSEAP
Trigger: GGGCGCCTCCGAACCCTGCAACCTGTCGTCCGCCGC...CCCATAGTCCCGGGCTGGACACGGGCTCTGCATCCCTAGAGGAAGAGAGCCCGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS GCA 90 bp AGAACGATGAGCGCCAGCAGTAGGCCCATACCCGCGGTCCACTGCTaGGACAGCGGCGCTGAGCCCTCGCTGGCTGGAGGCAGCAGCGAG +
Preference number: 5 (lower is better)
Translates to: RTMSASSRPIPAVHC*DSGAEPSLAGGSSE
Trigger: CTCGCTGCTGCCTCCAGCCAGCGAGGGCTCAGCGCCGCTGTCGCAGCAGTGGACCGCGGGTATGGGCCTACTGCTGGCGCTCATCGTTCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS GCA 90 bp AGCAGAACGATGAGCGCCAGCAGTAGGCCCATACCCGCGGTCCACTaGTGCGACAGCGGCGCTGAGCCCTCGCTGGCTGGAGGCAGCAGC +
Preference number: 5 (lower is better)
Translates to: SRTMSASSRPIPAVH*CDSGAEPSLAGGSS
Trigger: GCTGCTGCCTCCAGCCAGCGAGGGCTCAGCGCCGCTGTCGCAGCAGTGGACCGCGGGTATGGGCCTACTGCTGGCGCTCATCGTTCTGCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS TCA 90 bp TGTAGCAGCGGCGCGCTTCGTCGCTCTCGGCCCGCCACCAGTGCATaGGGATGGGCAGGAAGGACACCAACGCCGAGATGGCCCACACTG +
Preference number: 5 (lower is better)
Translates to: CSSGALRRSRPATSA*GWAGRTPTPRWPTL
Trigger: CAGTGTGGGCCATCTCGGCGTTGGTGTCCTTCCTGCCCATCCTCATGCACTGGTGGCGGGCCGAGAGCGACGAAGCGCGCCGCTGCTACA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS GCA 90 bp AGCGTGAACACACCCATGATGATGCCCAGTGTCTTGAGCGCCTTCTaGTCGCGCAGAGCCACGAGGCGCGACGGCCGCCGCTTGCTGGAG +
Preference number: 5 (lower is better)
Translates to: SVNTPMMMPSVLSAF*SRRATRRDGRRLLE
Trigger: CTCCAGCAAGCGGCGGCCGTCGCGCCTCGTGGCTCTGCGCGAGCAGAAGGCGCTCAAGACACTGGGCATCATCATGGGTGTGTTCACGCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR CAA 90 bp GCGGGCTCTCTTCCTCTAGGGATGCAGAGCCCGTGTCCAGCCCGGGACTATGGGAAAGCCTTCACCACGTaGGCCAGGAAGAAGGGCAGC +
Preference number: 5 (lower is better)
Translates to: AGSLPLGMQSPCPARDYGKAFTT*ARKKGS
Trigger: GCTGCCCTTCTTCCTGGCCAACGTGGTGAAGGCTTT...CCCATAGTCCCGGGCTGGACACGGGCTCTGCATCCCTAGAGGAAGAGAGCCCGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS TCA 90 bp CGTAGAAGGAGACGACGGACGAGGCGATGGCGTAGGCCCTGTTGGTaGCGAAATCGCAGCACTTGGGGTCGTTGTAGCAGCGGCGCGCTT +
Preference number: 5 (lower is better)
Translates to: RRRRRRTRRWRRPCW*RNRSTWGRCSSGAL
Trigger: AAGCGCGCCGCTGCTACAACGACCCCAAGTGCTGCGATTTCGTCACCAACAGGGCCTACGCCATCGCCTCGTCCGTCGTCTCCTTCTACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS CCA 90 bp CCGAGGAAGCGGCGCTCGCAGCTGTCGATCTTCTTTACCTGTTTTTaGGCCTCGCGGAACACCCGCAGGTACACGAAGGCCATGATGCAC +
Preference number: 5 (lower is better)
Translates to: PRKRRSQLSIFFTCF*ASRNTRRYTKAMMH
Trigger: GTGCATCATGGCCTTCGTGTACCTGCGGGTGTTCCGCGAGGCCCAAAAACAGGTAAAGAAGATCGACAGCTGCGAGCGCCGCTTCCTCGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR CAA 90 bp CGGTCCGGGGCTTTTCTGTACGTCTCGGATGATTCGATAGATCTGTGGGCTTTGAGGCGCTGGAAAGCCTaGCGGAAGTCGGGGCTGCGG +
Preference number: 5 (lower is better)
Translates to: RSGAFLYVSDDSIDLWALRRWKA*RKSGLR
Trigger: CCGCAGCCCCGACTTCCGCAAGGCTTTCCAGCGCCT...CAAAGCCCACAGATCTATCGAATCATCCGAGACGTACAGAAAAGCCCCGGACCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR CAA 90 bp ACACGAAAGGCCGAACCTCAGAGAGAAAGGAACTCAAGACAAGCCAGTAAGCCAATGATGCCCAGTGTCTaGAGCGCCTTCTGCTCGCGC +
Preference number: 5 (lower is better)
Translates to: TRKAEPQRERNSRQASKPMMPSV*SAFCSR
Trigger: GCGCGAGCAGAAGGCGCTCAAGACACTGGGCATCAT...TGGCTTACTGGCTTGTCTTGAGTTCCTTTCTCTCTGAGGTTCGGCCTTTCGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR CAA 90 bp ATACTAAGCCACACTCTCCCAACTCCTCCTAAACTTTCCTTTTTGCGCAAACGCGACATGATGAAGAGGTaGGTGAGCGTCTGCAGCCGC +
Preference number: 5 (lower is better)
Translates to: ILSHTLPTPPKLSFLRKRDMMKR*VSVCSR
Trigger: GCGGCTGCAGACGCTCACCAACCTCTTCATCATGTC...GCGTTTGCGCAAAAAGGAAAGTTTAGGAGGAGTTGGGAGAGTGTGGCTTAGTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS-3UTR CAA 90 bp ATACTAAGCCACACTCTCCCAACTCCTCCTAAACTTTCCTTTTTGCGCAAACGCCTTCTTTACCTGTTTTaGGGCCTCGCGGAACACCCG +
Preference number: 5 (lower is better)
Translates to: ILSHTLPTPPKLSFLRKRLLYLF*GLAEHP
Trigger: CGGGTGTTCCGCGAGGCCCAAAAACAGGTAAAGAAG...GCGTTTGCGCAAAAAGGAAAGTTTAGGAGGAGTTGGGAGAGTGTGGCTTAGTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS TCA 72 bp GTTGGCCAGCGAGTCTGCGGGGCGCGGTGGCCCAGGTaGCGGCGAGGGCTCAGGCGAGGGCGGCCGGGCTGG +
Preference number: 6 (lower is better)
Translates to: VGQRVCGARWPR*RRGLRRGRPGW
Trigger: CCAGCCCGGCCGCCCTCGCCTGAGCCCTCGCCGTCACCTGGGCCACCGCGCCCCGCAGACTCGCTGGCCAAC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS CCA 72 bp CGCGCAGAGCCACGAGGCGCGACGGCCGCCGCTTGCTaGAGCGCCCGTTGGCCAGCGAGTCTGCGGGGCGCG +
Preference number: 6 (lower is better)
Translates to: RAEPRGATAAAC*SARWPASLRGA
Trigger: CGCGCCCCGCAGACTCGCTGGCCAACGGGCGCTCCAGCAAGCGGCGGCCGTCGCGCCTCGTGGCTCTGCGCG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS CAA 90 bp CGCAGAGCCACGAGGCGCGACGGCCGCCGCTTGCTGGAGCGCCCGTaGGCCAGCGAGTCTGCGGGGCGCGGTGGCCCAGGTGACGGCGAG +
Preference number: 6 (lower is better)
Translates to: RRATRRDGRRLLERP*ASESAGRGGPGDGE
Trigger: CTCGCCGTCACCTGGGCCACCGCGCCCCGCAGACTCGCTGGCCAACGGGCGCTCCAGCAAGCGGCGGCCGTCGCGCCTCGTGGCTCTGCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS CCA 72 bp AGCCGGTCCAGGGCTCCAGCAGGCGCGCCGGTGGGGTaGTCCCGGCGTCGTCGTCGTCGTCGTCCGAGGGAG +
Preference number: 6 (lower is better)
Translates to: SRSRAPAGAPVG*SRRRRRRRPRE
Trigger: CTCCCTCGGACGACGACGACGACGACGCCGGGACCACCCCACCGGCGCGCCTGCTGGAGCCCTGGACCGGCT
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS CAA 90 bp CCTGGCGCCCCGGCTCGTCCAGGCTCGAATCGCTGTCCACAGTGGTaGTCCCGCCGTTGCAGCCGGTCCAGGGCTCCAGCAGGCGCGCCG +
Preference number: 6 (lower is better)
Translates to: PGAPARPGSNRCPQW*SRRCSRSRAPAGAP
Trigger: CGGCGCGCCTGCTGGAGCCCTGGACCGGCTGCAACGGCGGGACAACCACTGTGGACAGCGATTCGAGCCTGGACGAGCCGGGGCGCCAGG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS GCA 72 bp GCAGGAAGGACACCAACGCCGAGATGGCCCACACTGTaGACACGAGGGCCCGCGCTCGCGCGCGCGTCAGCA +
Preference number: 6 (lower is better)
Translates to: AGRTPTPRWPTL*TRGPALARASA
Trigger: TGCTGACGCGCGCGCGAGCGCGGGCCCTCGTGTGCACAGTGTGGGCCATCTCGGCGTTGGTGTCCTTCCTGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS GCA 72 bp GGCTCGAATCGCTGTCCACAGTGGTTGTCCCGCCGTTaGAGCCGGTCCAGGGCTCCAGCAGGCGCGCCGGTG +
Preference number: 6 (lower is better)
Translates to: GSNRCPQWLSRR*SRSRAPAGAPV
Trigger: CACCGGCGCGCCTGCTGGAGCCCTGGACCGGCTGCAACGGCGGGACAACCACTGTGGACAGCGATTCGAGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS CCA 72 bp GCCCCGGCTCGTCCAGGCTCGAATCGCTGTCCACAGTaGTTGTCCCGCCGTTGCAGCCGGTCCAGGGCTCCA +
Preference number: 6 (lower is better)
Translates to: APARPGSNRCPQ*LSRRCSRSRAP
Trigger: TGGAGCCCTGGACCGGCTGCAACGGCGGGACAACCACTGTGGACAGCGATTCGAGCCTGGACGAGCCGGGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS TCA 72 bp GGCGCGCTTCGTCGCTCTCGGCCCGCCACCAGTGCATaGGGATGGGCAGGAAGGACACCAACGCCGAGATGG +
Preference number: 6 (lower is better)
Translates to: GALRRSRPATSA*GWAGRTPTPRW
Trigger: CCATCTCGGCGTTGGTGTCCTTCCTGCCCATCCTCATGCACTGGTGGCGGGCCGAGAGCGACGAAGCGCGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS GCA 72 bp ACACCCATGATGATGCCCAGTGTCTTGAGCGCCTTCTaGTCGCGCAGAGCCACGAGGCGCGACGGCCGCCGC +
Preference number: 6 (lower is better)
Translates to: TPMMMPSVLSAF*SRRATRRDGRR
Trigger: GCGGCGGCCGTCGCGCCTCGTGGCTCTGCGCGAGCAGAAGGCGCTCAAGACACTGGGCATCATCATGGGTGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS CAA 72 bp CCGGCTCGTCCAGGCTCGAATCGCTGTCCACAGTGGTaGTCCCGCCGTTGCAGCCGGTCCAGGGCTCCAGCA +
Preference number: 6 (lower is better)
Translates to: PARPGSNRCPQW*SRRCSRSRAPA
Trigger: TGCTGGAGCCCTGGACCGGCTGCAACGGCGGGACAACCACTGTGGACAGCGATTCGAGCCTGGACGAGCCGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS TCA 72 bp AGACGACGGACGAGGCGATGGCGTAGGCCCTGTTGGTaGCGAAATCGCAGCACTTGGGGTCGTTGTAGCAGC +
Preference number: 6 (lower is better)
Translates to: RRRTRRWRRPCW*RNRSTWGRCSS
Trigger: GCTGCTACAACGACCCCAAGTGCTGCGATTTCGTCACCAACAGGGCCTACGCCATCGCCTCGTCCGTCGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS CCA 72 bp CGGCGCTCGCAGCTGTCGATCTTCTTTACCTGTTTTTaGGCCTCGCGGAACACCCGCAGGTACACGAAGGCC +
Preference number: 6 (lower is better)
Translates to: RRSQLSIFFTCF*ASRNTRRYTKA
Trigger: GGCCTTCGTGTACCTGCGGGTGTTCCGCGAGGCCCAAAAACAGGTAAAGAAGATCGACAGCTGCGAGCGCCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS CCA 72 bp AAGAAGACGAAGAGGCGATCCGGCACCAGGTCGCGGTaGAAAGCCTTCACCACGTTGGCCAGGAAGAAGGGC +
Preference number: 6 (lower is better)
Translates to: KKTKRRSGTRSR*KAFTTLARKKG
Trigger: GCCCTTCTTCCTGGCCAACGTGGTGAAGGCTTTCCACCGCGACCTGGTGCCGGATCGCCTCTTCGTCTTCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS CAA 72 bp GCGGCGCTCGCAGCTGTCGATCTTCTTTACCTGTTTTaGGGCCTCGCGGAACACCCGCAGGTACACGAAGGC +
Preference number: 6 (lower is better)
Translates to: AALAAVDLLYLF*GLAEHPQVHEG
Trigger: GCCTTCGTGTACCTGCGGGTGTTCCGCGAGGCCCAAAAACAGGTAAAGAAGATCGACAGCTGCGAGCGCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6
CDS CAA 90 bp GCCGAGGAAGCGGCGCTCGCAGCTGTCGATCTTCTTTACCTGTTTTaGGGCCTCGCGGAACACCCGCAGGTACACGAAGGCCATGATGCA +
Preference number: 6 (lower is better)
Translates to: AEEAALAAVDLLYLF*GLAEHPQVHEGHDA
Trigger: TGCATCATGGCCTTCGTGTACCTGCGGGTGTTCCGCGAGGCCCAAAAACAGGTAAAGAAGATCGACAGCTGCGAGCGCCGCTTCCTCGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038949.6