RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ADRA2C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045318

Ensembl transcript IDs: ENSMUST00000049545.7

Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTGTCTCTCGCCCAGCTCCTGTCTGCCACATCCCACACTGTGCCCTaGAGTCCACCCTGGGACTCTGGAGAGACCACACTGTTGGTCTCT +
Preference number: 1 (lower is better)
Translates to: LSLAQLLSATSHTVP*SPPWDSGETTLLVS
Trigger: AGAGACCAACAGTGTGGTCTCTCCAGAGTCCCAGGGTGGACTTCAGGGCACAGTGTGGGATGTGGCAGACAGGAGCTGGGCGAGAGACAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
3UTR-3UTR TCA 90 bp CCCAGACAGATGCCTTTTTCAGGTCATAGGAAGTCAGCCCTTGCTCACAGGGAATCCCACACTGTGCCCTaGAGTCCACCCTGGGACTCT +
Preference number: 2 (lower is better)
Translates to: PRQMPFSGHRKSALAHRESHTVP*SPPWDS
Trigger: AGAGTCCCAGGGTGGACTTCAGGGCACAGTGTGGGA...TTCCCTGTGAGCAAGGGCTGACTTCCTATGACCTGAAAAAGGCATCTGTCTGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
3UTR-3UTR CCA 90 bp CAACCTAGCTACAGCCCCTCGCTGAGATGGGAAGGCAAAGGTCTCCCTTTCTCCGAGAGACCACACTGTTaGTCTCTCTGTCTACCCGAG +
Preference number: 2 (lower is better)
Translates to: QPSYSPSLRWEGKGLPFSERPHC*SLCLPE
Trigger: CTCGGGTAGACAGAGAGACCAACAGTGTGGTCTCTC...GGAGAAAGGGAGACCTTTGCCTTCCCATCTCAGCGAGGGGCTGTAGCTAGGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
3UTR-3UTR CCA 90 bp AGCTCTAAAGCCCTAAGTTCACAGCCACACTCCACAGAAGCCTTCTCAGGAACTAGCCCCTCGCTGAGATaGGAAGGCAAAGGTCTCCCT +
Preference number: 2 (lower is better)
Translates to: SSKALSSQPHSTEAFSGTSPSLR*EGKGLP
Trigger: AGGGAGACCTTTGCCTTCCCATCTCAGCGAGGGGCT...AGTTCCTGAGAAGGCTTCTGTGGAGTGTGGCTGTGAACTTAGGGCTTTAGAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
3UTR TCA 72 bp AGGAACTGGATCCACAACCTAGCTACAGCCCCTCGCTaGGATGGGAAGGCAAAGGTCTCCCTTTCTCCTCCC +
Preference number: 3 (lower is better)
Translates to: RNWIHNLATAPR*DGKAKVSLSPP
Trigger: GGGAGGAGAAAGGGAGACCTTTGCCTTCCCATCTCAGCGAGGGGCTGTAGCTAGGTTGTGGATCCAGTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
3UTR-3UTR CAA 90 bp CTCTCCTCCCCCAGACAGATGCCTTTTTCAGGTCATAGGAAGTCAGCCCTTGCTGGAGAGACCACACTGTaGGTCTCTCTGTCTACCCGA +
Preference number: 3 (lower is better)
Translates to: LSSPRQMPFSGHRKSALAGETTL*VSLSTR
Trigger: TCGGGTAGACAGAGAGACCAACAGTGTGGTCTCTCC...AGCAAGGGCTGACTTCCTATGACCTGAAAAAGGCATCTGTCTGGGGGAGGAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
3UTR-3UTR CAA 90 bp CTCTCCTCCCCCAGACAGATGCCTTTTTCAGGTCATAGGAAGTCAGCCCTTGCTTGGTGTGCTCCTTTCTaGGTGTGGTTTAGTTGTCTG +
Preference number: 3 (lower is better)
Translates to: LSSPRQMPFSGHRKSALAWCAPF*VWFSCL
Trigger: CAGACAACTAAACCACACCAAGAAAGGAGCACACCA...AGCAAGGGCTGACTTCCTATGACCTGAAAAAGGCATCTGTCTGGGGGAGGAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
3UTR CCA 72 bp AGACCGAGAAGGGGGTGGTGTGCTCCTTTCTTGGTGTaGTTTAGTTGTCTGAGCTCTAAAGCCCTAAGTTCA +
Preference number: 3 (lower is better)
Translates to: RPRRGWCAPFLV*FSCLSSKALSS
Trigger: TGAACTTAGGGCTTTAGAGCTCAGACAACTAAACCACACCAAGAAAGGAGCACACCACCCCCTTCTCGGTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR TCA 90 bp GGCCCAGTTGTCTCTCGCCCAGCTCCTGTCTGCCACATCCCACACTGTGCCCTGGGCCGCGTTTCTCGCTaGGCGTACGCGTGCGCAGCT +
Preference number: 4 (lower is better)
Translates to: GPVVSRPAPVCHIPHCALGRVSR*AYACAA
Trigger: AGCTGCGCACGCGTACGCTCAGCGAGAAACGCGGCC...CAGGGCACAGTGTGGGATGTGGCAGACAGGAGCTGGGCGAGAGACAACTGGGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR GCA 90 bp CCGAGTTCAGAGCTGTCCAGGACGTCAGTGGGTCCAGGTCCAGGAGGCCAGAGGCTGCGGGGCGCGCAGTaGTCGGCTGGTCAACACAGC +
Preference number: 4 (lower is better)
Translates to: PSSELSRTSVGPGPGGQRLRGAQ*SAGQHS
Trigger: GCTGTGTTGACCAGCCGAGCACTGCGCGCCCCGCAG...CCTCTGGCCTCCTGGACCTGGACCCACTGACGTCCTGGACAGCTCTGAACTCGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR GCA 90 bp CCGAGTTCAGAGCTGTCCAGGACGTCAGTGGGTCCAGGTCCAGGAGGCCAGAGGGAAGCGCTTCTCGCGTaGCTGGGCCACCTTGCGGCG +
Preference number: 4 (lower is better)
Translates to: PSSELSRTSVGPGPGGQREALLA*LGHLAA
Trigger: CGCCGCAAGGTGGCCCAGGCACGCGAGAAGCGCTTC...CCTCTGGCCTCCTGGACCTGGACCCACTGACGTCCTGGACAGCTCTGAACTCGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR CCA 90 bp CCGAGTTCAGAGCTGTCCAGGACGTCAGTGGGTCCAGGTCCAGGAGGCCAGAGGTACGCGTGCGCAGCTTaGCCACGCGGTAGATGCGCG +
Preference number: 4 (lower is better)
Translates to: PSSELSRTSVGPGPGGQRYACAA*PRGRCA
Trigger: CGCGCATCTACCGCGTGGCCAAGCTGCGCACGCGTA...CCTCTGGCCTCCTGGACCTGGACCCACTGACGTCCTGGACAGCTCTGAACTCGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR GCA 90 bp CCGAGTTCAGAGCTGTCCAGGACGTCAGTGGGTCCAGGTCCAGGAGGCCAGAGGTCTCCCCCGCTGCCTTaGCCAGCCCATTCTCTGTGG +
Preference number: 4 (lower is better)
Translates to: PSSELSRTSVGPGPGGQRSPPLP*PAHSLW
Trigger: CCACAGAGAATGGGCTGGGCAAGGCAGCGGGGGAGA...CCTCTGGCCTCCTGGACCTGGACCCACTGACGTCCTGGACAGCTCTGAACTCGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR GCA 90 bp CTGTTGGTCTCTCTGTCTACCCGAGTTCAGAGCTGTCCAGGACGTCAGTGGGTCCCGGCTCCACTTCAGTaGGCGGGGGCGCGCAATGCC +
Preference number: 4 (lower is better)
Translates to: LLVSLSTRVQSCPGRQWVPAPLQ*AGARNA
Trigger: GGCATTGCGCGCCCCCGCGCACTGAAGTGGAGCCGG...GACCCACTGACGTCCTGGACAGCTCTGAACTCGGGTAGACAGAGAGACCAACAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR CCA 90 bp TGTTGGTCTCTCTGTCTACCCGAGTTCAGAGCTGTCCAGGACGTCAGTGGGTCCCGCTTCTCGCGTGCCTaGGCCACCTTGCGGCGGCAC +
Preference number: 4 (lower is better)
Translates to: CWSLCLPEFRAVQDVSGSRFSRA*ATLRRH
Trigger: GTGCCGCCGCAAGGTGGCCCAGGCACGCGAGAAGCG...GGACCCACTGACGTCCTGGACAGCTCTGAACTCGGGTAGACAGAGAGACCAACA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR CCA 90 bp CAGAAGCCTTCTCAGGAACTGGATCCACAACCTAGCTACAGCCCCTCGCTGAGAGCACCTGCGGAGTACTaGCCCGGCGGTGGCACCCAG +
Preference number: 4 (lower is better)
Translates to: QKPSQELDPQPSYSPSLRAPAEY*PGGGTQ
Trigger: CTGGGTGCCACCGCCGGGCCAGTACTCCGCAGGTGC...TCTCAGCGAGGGGCTGTAGCTAGGTTGTGGATCCAGTTCCTGAGAAGGCTTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR GCA 90 bp CAGAAGCCTTCTCAGGAACTGGATCCACAACCTAGCTACAGCCCCTCGCTGAGAGTGCCTGGGCCACCTTaGGGCGGCACACACTGCTGC +
Preference number: 4 (lower is better)
Translates to: QKPSQELDPQPSYSPSLRVPGPP*GGTHCC
Trigger: GCAGCAGTGTGTGCCGCCGCAAGGTGGCCCAGGCAC...TCTCAGCGAGGGGCTGTAGCTAGGTTGTGGATCCAGTTCCTGAGAAGGCTTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR GCA 90 bp TGTTGGTCTCTCTGTCTACCCGAGTTCAGAGCTGTCCAGGACGTCAGTGGGTCCGAAACCCACCACAGCTaGCAACCCCGCCACAGCACC +
Preference number: 4 (lower is better)
Translates to: CWSLCLPEFRAVQDVSGSETHHS*QPRHST
Trigger: GGTGCTGTGGCGGGGTTGGCAGCTGTGGTGGGTTTC...GGACCCACTGACGTCCTGGACAGCTCTGAACTCGGGTAGACAGAGAGACCAACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR GCA 90 bp TGTTGGTCTCTCTGTCTACCCGAGTTCAGAGCTGTCCAGGACGTCAGTGGGTCCTGGCCACGCGGTAGATaGGCGCATAGACCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: CWSLCLPEFRAVQDVSGSWPRGR*AHRPGP
Trigger: TGGGCCTGGTCTATGCGCGCATCTACCGCGTGGCCA...GGACCCACTGACGTCCTGGACAGCTCTGAACTCGGGTAGACAGAGAGACCAACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR GCA 90 bp CAGGAACTGGATCCACAACCTAGCTACAGCCCCTCGCTGAGATGGGAAGGCAAACCCGTTCTCCCCCGCTaGCTTGCCCAGCCCATTCTC +
Preference number: 4 (lower is better)
Translates to: QELDPQPSYSPSLRWEGKPVLPR*LAQPIL
Trigger: GAGAATGGGCTGGGCAAGGCAGCGGGGGAGAACGGG...TTTGCCTTCCCATCTCAGCGAGGGGCTGTAGCTAGGTTGTGGATCCAGTTCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR TCA 90 bp TGTTGGTCTCTCTGTCTACCCGAGTTCAGAGCTGTCCAGGACGTCAGTGGGTCCGTACGAACACGCCCATaGCCACCGCCAACACGAAGG +
Preference number: 4 (lower is better)
Translates to: CWSLCLPEFRAVQDVSGSVRTRP*PPPTRR
Trigger: CCTTCGTGTTGGCGGTGGTCATGGGCGTGTTCGTAC...GGACCCACTGACGTCCTGGACAGCTCTGAACTCGGGTAGACAGAGAGACCAACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR CCA 90 bp ATGCCTTTTTCAGGTCATAGGAAGTCAGCCCTTGCTCACAGGGAAGACCGAGAACCAGCCCATTCTCTGTaGTCGGGGACGCGCCGTCGG +
Preference number: 4 (lower is better)
Translates to: MPFSGHRKSALAHREDREPAHSL*SGTRRR
Trigger: CCGACGGCGCGTCCCCGACCACAGAGAATGGGCTGG...TTCTCGGTCTTCCCTGTGAGCAAGGGCTGACTTCCTATGACCTGAAAAAGGCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR TCA 90 bp CTCTCCTCCCCCAGACAGATGCCTTTTTCAGGTCATAGGAAGTCAGCCCTTGCTACCAGGTCTCATCGTTaGGGCCGCACTGCGGATAGG +
Preference number: 4 (lower is better)
Translates to: LSSPRQMPFSGHRKSALATRSHR*GRTADR
Trigger: CCTATCCGCAGTGCGGCCTCAACGATGAGACCTGGT...AGCAAGGGCTGACTTCCTATGACCTGAAAAAGGCATCTGTCTGGGGGAGGAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
3UTR CAA 72 bp GACAGATGCCTTTTTCAGGTCATAGGAAGTCAGCCCTaGCTCACAGGGAAGACCGAGAAGGGGGTGGTGTGC +
Preference number: 4 (lower is better)
Translates to: DRCLFQVIGSQP*LTGKTEKGVVC
Trigger: GCACACCACCCCCTTCTCGGTCTTCCCTGTGAGCAAGGGCTGACTTCCTATGACCTGAAAAAGGCATCTGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR GCA 90 bp CAACCTAGCTACAGCCCCTCGCTGAGATGGGAAGGCAAAGGTCTCCCTTTCTCCCGAAGAAGGAGCCTATaGAGGAGGACAAGATGTACC +
Preference number: 4 (lower is better)
Translates to: QPSYSPSLRWEGKGLPFSRRRSL*RRTRCT
Trigger: GGTACATCTTGTCCTCCTGCATAGGCTCCTTCTTCG...GGAGAAAGGGAGACCTTTGCCTTCCCATCTCAGCGAGGGGCTGTAGCTAGGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
3UTR CAA 72 bp CAGGGAAGACCGAGAAGGGGGTGGTGTGCTCCTTTCTaGGTGTGGTTTAGTTGTCTGAGCTCTAAAGCCCTA +
Preference number: 4 (lower is better)
Translates to: QGRPRRGWCAPF*VWFSCLSSKAL
Trigger: TAGGGCTTTAGAGCTCAGACAACTAAACCACACCAAGAAAGGAGCACACCACCCCCTTCTCGGTCTTCCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS CCA 90 bp GCGCCCGGCGCCGACGCGACAGGAAGAACTCGACGGAGCGCGAGCTaGCCCGCGACAGGCGCCCTCCGGGGCCTGGGGACCGAGACGCCG +
Preference number: 5 (lower is better)
Translates to: APGADATGRTRRSAS*PATGALRGLGTETP
Trigger: CGGCGTCTCGGTCCCCAGGCCCCGGAGGGCGCCTGTCGCGGGCCAGCTCGCGCTCCGTCGAGTTCTTCCTGTCGCGTCGGCGCCGGGCGC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS CCA 90 bp CTCGACGGAGCGCGAGCTGGCCCGCGACAGGCGCCCTCCGGGGCCTaGGGACCGAGACGCCGTCCGAGCACCCTGCTCGGCTGCCAGTCC +
Preference number: 5 (lower is better)
Translates to: LDGARAGPRQAPSGA*GPRRRPSTLLGCQS
Trigger: GGACTGGCAGCCGAGCAGGGTGCTCGGACGGCGTCTCGGTCCCCAGGCCCCGGAGGGCGCCTGTCGCGGGCCAGCTCGCGCTCCGTCGAG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS GCA 90 bp CTCCTCTGCGCAGCGCGCCCCGGCGCCTCCGCCTCTCGGCCGCACTaGTCTCATCCGGCTCCACTTCAGTGCGCGGGGGCGCGCAATGCC +
Preference number: 5 (lower is better)
Translates to: LLCAARPGASASRPH*SHPAPLQCAGARNA
Trigger: GGCATTGCGCGCCCCCGCGCACTGAAGTGGAGCCGGATGAGAGCAGTGCGGCCGAGAGGCGGAGGCGCCGGGGCGCGCTGCGCAGAGGAG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS GCA 90 bp GAGCACCCTGCTCGGCTGCCAGTCCCGGTCCCGGTCCGTCCGCACTaGCCGTGTCCCCCTCAGCACCCTCTCGCCGCCGTCCTCCTCTGC +
Preference number: 5 (lower is better)
Translates to: EHPARLPVPVPVRPH*PCPPQHPLAAVLLC
Trigger: GCAGAGGAGGACGGCGGCGAGAGGGTGCTGAGGGGGACACGGGCAGTGCGGACGGACCGGGACCGGGACTGGCAGCCGAGCAGGGTGCTC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS GCA 90 bp AGCGCTTCTCGCGTGCCTGGGCCACCTTGCGGCGGCACACACTGCTaGGCGCCCGGCGCCGACGCGACAGGAAGAACTCGACGGAGCGCG +
Preference number: 5 (lower is better)
Translates to: SASRVPGPPCGGTHC*APGADATGRTRRSA
Trigger: CGCGCTCCGTCGAGTTCTTCCTGTCGCGTCGGCGCCGGGCGCGCAGCAGTGTGTGCCGCCGCAAGGTGGCCCAGGCACGCGAGAAGCGCT
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS GCA 90 bp GCCTCCGCCTCTCGGCCGCACTGCTCTCATCCGGCTCCACTTCAGTaGGCGGGGGCGCGCAATGCCCGTTCTCCCCCGCTGCCTTGCCCA +
Preference number: 5 (lower is better)
Translates to: ASASRPHCSHPAPLQ*AGARNARSPPLPCP
Trigger: TGGGCAAGGCAGCGGGGGAGAACGGGCATTGCGCGCCCCCGCGCACTGAAGTGGAGCCGGATGAGAGCAGTGCGGCCGAGAGGCGGAGGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS CCA 90 bp AAACCCACCACAGCTGCCAACCCCGCCACAGCACCTGCGGAGTACTaGCCCGGCGGTGGCACCCAGTCGGTCCCCGAGGCGTTGGCACCC +
Preference number: 5 (lower is better)
Translates to: KPTTAANPATAPAEY*PGGGTQSVPEALAP
Trigger: GGGTGCCAACGCCTCGGGGACCGACTGGGTGCCACCGCCGGGCCAGTACTCCGCAGGTGCTGTGGCGGGGTTGGCAGCTGTGGTGGGTTT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS GCA 90 bp AACGATGAGGAAACCCACCACAGCTGCCAACCCCGCCACAGCACCTaGGGAGTACTGGCCCGGCGGTGGCACCCAGTCGGTCCCCGAGGC +
Preference number: 5 (lower is better)
Translates to: NDEETHHSCQPRHST*GVLARRWHPVGPRG
Trigger: GCCTCGGGGACCGACTGGGTGCCACCGCCGGGCCAGTACTCCGCAGGTGCTGTGGCGGGGTTGGCAGCTGTGGTGGGTTTCCTCATCGTT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS GCA 90 bp GCACTGCTCTCATCCGGCTCCACTTCAGTGCGCGGGGGCGCGCAATaGCCGTTCTCCCCCGCTGCCTTGCCCAGCCCATTCTCTGTGGTC +
Preference number: 5 (lower is better)
Translates to: ALLSSGSTSVRGGAQ*PFSPAALPSPFSVV
Trigger: GACCACAGAGAATGGGCTGGGCAAGGCAGCGGGGGAGAACGGGCATTGCGCGCCCCCGCGCACTGAAGTGGAGCCGGATGAGAGCAGTGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR CAA 90 bp TGTTGGTCTCTCTGTCTACCCGAGTTCAGAGCTGTCCAGGACGTCAGTGGGTCCTCGGTCCCCGAGGCGTaGGCACCCCCGCCGCTACCC +
Preference number: 5 (lower is better)
Translates to: CWSLCLPEFRAVQDVSGSSVPEA*APPPLP
Trigger: GGGTAGCGGCGGGGGTGCCAACGCCTCGGGGACCGA...GGACCCACTGACGTCCTGGACAGCTCTGAACTCGGGTAGACAGAGAGACCAACA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS GCA 90 bp CACATTGCCTACCACGGTGAAAACGATGAGGAAACCCACCACAGCTaGCAACCCCGCCACAGCACCTGCGGAGTACTGGCCCGGCGGTGG +
Preference number: 5 (lower is better)
Translates to: HIAYHGENDEETHHS*QPRHSTCGVLARRW
Trigger: CCACCGCCGGGCCAGTACTCCGCAGGTGCTGTGGCGGGGTTGGCAGCTGTGGTGGGTTTCCTCATCGTTTTCACCGTGGTAGGCAATGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR CAA 90 bp CAACCTAGCTACAGCCCCTCGCTGAGATGGGAAGGCAAAGGTCTCCCTTTCTCCCGTGCCTGGGCCACCTaGCGGCGGCACACACTGCTG +
Preference number: 5 (lower is better)
Translates to: QPSYSPSLRWEGKGLPFSRAWAT*RRHTLL
Trigger: CAGCAGTGTGTGCCGCCGCAAGGTGGCCCAGGCACG...GGAGAAAGGGAGACCTTTGCCTTCCCATCTCAGCGAGGGGCTGTAGCTAGGTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR CAA 90 bp CTCTCTGTCTACCCGAGTTCAGAGCTGTCCAGGACGTCAGTGGGTCCAGGTCCAGTTGTACTCTACCGCTaGCGTCACCGACCAGTAGCG +
Preference number: 5 (lower is better)
Translates to: LSVYPSSELSRTSVGPGPVVLYR*RHRPVA
Trigger: CGCTACTGGTCGGTGACGCAAGCGGTAGAGTACAAC...TGGACCTGGACCCACTGACGTCCTGGACAGCTCTGAACTCGGGTAGACAGAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR CAA 90 bp CAACCTAGCTACAGCCCCTCGCTGAGATGGGAAGGCAAAGGTCTCCCTTTCTCCTACACCACACCACACTaGCCCGAAGTACCAGTAGGC +
Preference number: 5 (lower is better)
Translates to: QPSYSPSLRWEGKGLPFSYTTPH*PEVPVG
Trigger: GCCTACTGGTACTTCGGGCAAGTGTGGTGTGGTGTA...GGAGAAAGGGAGACCTTTGCCTTCCCATCTCAGCGAGGGGCTGTAGCTAGGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR CAA 90 bp CTCTCCTCCCCCAGACAGATGCCTTTTTCAGGTCATAGGAAGTCAGCCCTTGCTGGCGTGCGCTTCAGGTaGTACTCTACCGCTTGCGTC +
Preference number: 5 (lower is better)
Translates to: LSSPRQMPFSGHRKSALAGVRFR*YSTACV
Trigger: GACGCAAGCGGTAGAGTACAACCTGAAGCGCACGCC...AGCAAGGGCTGACTTCCTATGACCTGAAAAAGGCATCTGTCTGGGGGAGGAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS-3UTR CAA 90 bp CCCAGACAGATGCCTTTTTCAGGTCATAGGAAGTCAGCCCTTGCTCACAGGGAAATCACCACGAGCACATaGCCTACCACGGTGAAAACG +
Preference number: 5 (lower is better)
Translates to: PRQMPFSGHRKSALAHREITTST*PTTVKT
Trigger: CGTTTTCACCGTGGTAGGCAATGTGCTCGTGGTGAT...TTCCCTGTGAGCAAGGGCTGACTTCCTATGACCTGAAAAAGGCATCTGTCTGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS GCA 72 bp CCGGGGCCTGGGGACCGAGACGCCGTCCGAGCACCCTaGTCGGCTGCCAGTCCCGGTCCCGGTCCGTCCGCA +
Preference number: 6 (lower is better)
Translates to: PGPGDRDAVRAP*SAASPGPGPSA
Trigger: TGCGGACGGACCGGGACCGGGACTGGCAGCCGAGCAGGGTGCTCGGACGGCGTCTCGGTCCCCAGGCCCCGG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS CCA 72 bp CCCCGCCACAGCACCTGCGGAGTACTGGCCCGGCGGTaGCACCCAGTCGGTCCCCGAGGCGTTGGCACCCCC +
Preference number: 6 (lower is better)
Translates to: PRHSTCGVLARR*HPVGPRGVGTP
Trigger: GGGGGTGCCAACGCCTCGGGGACCGACTGGGTGCCACCGCCGGGCCAGTACTCCGCAGGTGCTGTGGCGGGG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS CCA 72 bp GCCGACGCGACAGGAAGAACTCGACGGAGCGCGAGCTaGCCCGCGACAGGCGCCCTCCGGGGCCTGGGGACC +
Preference number: 6 (lower is better)
Translates to: ADATGRTRRSAS*PATGALRGLGT
Trigger: GGTCCCCAGGCCCCGGAGGGCGCCTGTCGCGGGCCAGCTCGCGCTCCGTCGAGTTCTTCCTGTCGCGTCGGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS TCA 72 bp ACGCGCCGTCGGGGCCGGCGGGGCCGCGTTTCTCGCTaGGCGTACGCGTGCGCAGCTTGGCCACGCGGTAGA +
Preference number: 6 (lower is better)
Translates to: TRRRGRRGRVSR*AYACAAWPRGR
Trigger: TCTACCGCGTGGCCAAGCTGCGCACGCGTACGCTCAGCGAGAAACGCGGCCCCGCCGGCCCCGACGGCGCGT
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS GCA 72 bp TGGGGACCGAGACGCCGTCCGAGCACCCTGCTCGGCTaGCAGTCCCGGTCCCGGTCCGTCCGCACTGCCCGT +
Preference number: 6 (lower is better)
Translates to: WGPRRRPSTLLG*QSRSRSVRTAR
Trigger: ACGGGCAGTGCGGACGGACCGGGACCGGGACTGGCAGCCGAGCAGGGTGCTCGGACGGCGTCTCGGTCCCCA
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS GCA 72 bp CGCGTGCCTGGGCCACCTTGCGGCGGCACACACTGCTaGGCGCCCGGCGCCGACGCGACAGGAAGAACTCGA +
Preference number: 6 (lower is better)
Translates to: RVPGPPCGGTHC*APGADATGRTR
Trigger: TCGAGTTCTTCCTGTCGCGTCGGCGCCGGGCGCGCAGCAGTGTGTGCCGCCGCAAGGTGGCCCAGGCACGCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS CCA 72 bp ACAGCTGCCAACCCCGCCACAGCACCTGCGGAGTACTaGCCCGGCGGTGGCACCCAGTCGGTCCCCGAGGCG +
Preference number: 6 (lower is better)
Translates to: TAANPATAPAEY*PGGGTQSVPEA
Trigger: CGCCTCGGGGACCGACTGGGTGCCACCGCCGGGCCAGTACTCCGCAGGTGCTGTGGCGGGGTTGGCAGCTGT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS GCA 72 bp TCTCGCGTGCCTGGGCCACCTTGCGGCGGCACACACTaGTGCGCGCCCGGCGCCGACGCGACAGGAAGAACT +
Preference number: 6 (lower is better)
Translates to: SRVPGPPCGGTH*CAPGADATGRT
Trigger: AGTTCTTCCTGTCGCGTCGGCGCCGGGCGCGCAGCAGTGTGTGCCGCCGCAAGGTGGCCCAGGCACGCGAGA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS CAA 72 bp ACGAAGGTGAAGCGCTTCTCGCGTGCCTGGGCCACCTaGCGGCGGCACACACTGCTGCGCGCCCGGCGCCGA +
Preference number: 6 (lower is better)
Translates to: TKVKRFSRAWAT*RRHTLLRARRR
Trigger: TCGGCGCCGGGCGCGCAGCAGTGTGTGCCGCCGCAAGGTGGCCCAGGCACGCGAGAAGCGCTTCACCTTCGT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS GCA 72 bp TCTCGGCCGCACTGCTCTCATCCGGCTCCACTTCAGTaGGCGGGGGCGCGCAATGCCCGTTCTCCCCCGCTG +
Preference number: 6 (lower is better)
Translates to: SRPHCSHPAPLQ*AGARNARSPPL
Trigger: CAGCGGGGGAGAACGGGCATTGCGCGCCCCCGCGCACTGAAGTGGAGCCGGATGAGAGCAGTGCGGCCGAGA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS GCA 72 bp GAAACCCACCACAGCTGCCAACCCCGCCACAGCACCTaGGGAGTACTGGCCCGGCGGTGGCACCCAGTCGGT +
Preference number: 6 (lower is better)
Translates to: ETHHSCQPRHST*GVLARRWHPVG
Trigger: ACCGACTGGGTGCCACCGCCGGGCCAGTACTCCGCAGGTGCTGTGGCGGGGTTGGCAGCTGTGGTGGGTTTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS GCA 72 bp TCATCCGGCTCCACTTCAGTGCGCGGGGGCGCGCAATaGCCGTTCTCCCCCGCTGCCTTGCCCAGCCCATTC +
Preference number: 6 (lower is better)
Translates to: SSGSTSVRGGAQ*PFSPAALPSPF
Trigger: GAATGGGCTGGGCAAGGCAGCGGGGGAGAACGGGCATTGCGCGCCCCCGCGCACTGAAGTGGAGCCGGATGA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7
CDS CAA 72 bp GCTCGGCTGGTCAACACAGCGATCACCACGAGCACATaGCCTACCACGGTGAAAACGATGAGGAAACCCACC +
Preference number: 6 (lower is better)
Translates to: ARLVNTAITTST*PTTVKTMRKPT
Trigger: GGTGGGTTTCCTCATCGTTTTCACCGTGGTAGGCAATGTGCTCGTGGTGATCGCTGTGTTGACCAGCCGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049545.7