RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ADORA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042429

Ensembl transcript IDs: ENSMUST00000038191.8, ENSMUST00000086465.6, ENSMUST00000169927.2, ENSMUST00000187631.2

Found 312 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGGCTGACCATACCTCCACTCCTGGCTATAGCACGCAGCTTTTCTaGAGCGTCCGAGCATCACCTAAGGTCAGGGGCCCTGGGCTGGTG +
Preference number: 1 (lower is better)
Translates to: LADHTSTPGYSTQLF*SVRASPKVRGPGLV
Trigger: CACCAGCCCAGGGCCCCTGACCTTAGGTGATGCTCGGACGCTGCAGAAAAGCTGCGTGCTATAGCCAGGAGTGGAGGTATGGTCAGCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR GCA 90 bp GTGATGTCCGCCTCTTGCCGCAATCCTCCGTGGCTCAGGTTTTCCTaGCCACTCCTCTCTGTTCACCTCCTGATCAGCCTCAGCCCTGCT +
Preference number: 1 (lower is better)
Translates to: VMSASCRNPPWLRFS*PLLSVHLLISLSPA
Trigger: AGCAGGGCTGAGGCTGATCAGGAGGTGAACAGAGAGGAGTGGGCAGGAAAACCTGAGCCACGGAGGATTGCGGCAAGAGGCGGACATCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 90 bp GCTCCCAAGGGTTGTACTTCCTGGGGAAGCTCTTCTCCTGGGGCTTaGAAGCAGAGATGGTGTCCCTCAGGAGAGTCCAGGCCTGCTCTG +
Preference number: 1 (lower is better)
Translates to: APKGCTSWGSSSPGA*KQRWCPSGESRPAL
Trigger: CAGAGCAGGCCTGGACTCTCCTGAGGGACACCATCTCTGCTTCCAAGCCCCAGGAGAAGAGCTTCCCCAGGAAGTACAACCCTTGGGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR CCA 90 bp GCAGCATGCTCCCAAGGGTTGTACTTCCTGGGGAAGCTCTTCTCCTaGGGCTTGGAAGCAGAGATGGTGTCCCTCAGGAGAGTCCAGGCC +
Preference number: 1 (lower is better)
Translates to: AACSQGLYFLGKLFS*GLEAEMVSLRRVQA
Trigger: GGCCTGGACTCTCCTGAGGGACACCATCTCTGCTTCCAAGCCCCAGGAGAAGAGCTTCCCCAGGAAGTACAACCCTTGGGAGCATGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR CCA 90 bp GTAGCACTGGGTCATGCTGGGGAGGTCCAGAAGGGATGGGTACTCTaGGTGGTGGTCACAGGTCAGCATCTGGGCTTGGCTCTGAGTGAC +
Preference number: 1 (lower is better)
Translates to: VALGHAGEVQKGWVL*VVVTGQHLGLALSD
Trigger: GTCACTCAGAGCCAAGCCCAGATGCTGACCTGTGACCACCACCCAGAGTACCCATCCCTTCTGGACCTCCCCAGCATGACCCAGTGCTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR TCA 90 bp GACAACATGTCAGGTCTCTCCTTCTACCCCGTGGGTCCCAGGGACTaGACTCAGGGTGGTAAGCTTGGTGACAAGCACCCTCACCCGCTG +
Preference number: 1 (lower is better)
Translates to: DNMSGLSFYPVGPRD*TQGGKLGDKHPHPL
Trigger: CAGCGGGTGAGGGTGCTTGTCACCAAGCTTACCACCCTGAGTTCAGTCCCTGGGACCCACGGGGTAGAAGGAGAGACCTGACATGTTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR GCA 90 bp GGCTGGAGGTTAAAGGTGGGAGTCGGAAGGGTGCCCTCAGCACCCTaGTGTAGTGGACAGACTGAGTCCCTCTTGGGAGCTGGACTAGAT +
Preference number: 1 (lower is better)
Translates to: GWRLKVGVGRVPSAP*CSGQTESLLGAGLD
Trigger: ATCTAGTCCAGCTCCCAAGAGGGACTCAGTCTGTCCACTACAGCAGGGTGCTGAGGGCACCCTTCCGACTCCCACCTTTAACCTCCAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 90 bp GAAGACAGTGTAGCACTGGGTCATGCTGGGGAGGTCCAGAAGGGATaGGTACTCTGGGTGGTGGTCACAGGTCAGCATCTGGGCTTGGCT +
Preference number: 1 (lower is better)
Translates to: EDSVALGHAGEVQKG*VLWVVVTGQHLGLA
Trigger: AGCCAAGCCCAGATGCTGACCTGTGACCACCACCCAGAGTACCCATCCCTTCTGGACCTCCCCAGCATGACCCAGTGCTACACTGTCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 90 bp ACACCCAAGGGTTGTACTTCCTGGGGAAGCTCTTCTCCTGGGGCTTaGAAGCAGAGATGGTGTCCCTCAGGAGAGTCCAGGCCTGCTCTG +
Preference number: 1 (lower is better)
Translates to: TPKGCTSWGSSSPGA*KQRWCPSGESRPAL
Trigger: CAGAGCAGGCCTGGACTCTCCTGAGGGACACCATCTCTGCTTCCAAGCCCCAGGAGAAGAGCTTCCCCAGGAAGTACAACCCTTGGGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169927.2
3UTR TCA 90 bp GCACTGGGCAGAGCCCAGCTTTGGAAATTGAGCCTGAGGAAGGACTaGGAAGGGTGGAGGTGGTTCTCTACCCGACTCCCCACTATCTCT +
Preference number: 1 (lower is better)
Translates to: ALGRAQLWKLSLRKD*EGWRWFSTRLPTIS
Trigger: AGAGATAGTGGGGAGTCGGGTAGAGAACCACCTCCACCCTTCTCAGTCCTTCCTCAGGCTCAATTTCCAAAGCTGGGCTCTGCCCAGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 90 bp TGTACTTCCTGGGGAAGCTCTTCTCCTGGGGCTTGGAAGCAGAGATaGTGTCCCTCAGGAGAGTCCAGGCCTGCTCTGAGAGTTGGTGAA +
Preference number: 1 (lower is better)
Translates to: CTSWGSSSPGAWKQR*CPSGESRPALRVGE
Trigger: TTCACCAACTCTCAGAGCAGGCCTGGACTCTCCTGAGGGACACCATCTCTGCTTCCAAGCCCCAGGAGAAGAGCTTCCCCAGGAAGTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 90 bp GGTCTGGTCTGGTCTGGTCTGGTCTGGTCTGGTCTTTCACACTTCTaGGCACACCAGAGGTGCCCAGGAGCACCTGGGATCTTCTTAGAT +
Preference number: 1 (lower is better)
Translates to: GLVWSGLVWSGLSHF*AHQRCPGAPGIFLD
Trigger: ATCTAAGAAGATCCCAGGTGCTCCTGGGCACCTCTGGTGTGCCCAGAAGTGTGAAAGACCAGACCAGACCAGACCAGACCAGACCAGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR GCA 90 bp TCAGGTCTCAGAGGCAGACAGAAATGGAATGTGATGTCCGCCTCTTaGCGCAATCCTCCGTGGCTCAGGTTTTCCTGCCCACTCCTCTCT +
Preference number: 1 (lower is better)
Translates to: SGLRGRQKWNVMSAS*RNPPWLRFSCPLLS
Trigger: AGAGAGGAGTGGGCAGGAAAACCTGAGCCACGGAGGATTGCGGCAAGAGGCGGACATCACATTCCATTTCTGTCTGCCTCTGAGACCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 90 bp AGCGTCCGAGCATCACCTAAGGTCAGGGGCCCTGGGCTGGTGGAGTaGGTGGACAGAGGAATGAAAGTTTCTCTTGAGAGCTGTTCTAAC +
Preference number: 1 (lower is better)
Translates to: SVRASPKVRGPGLVE*VDRGMKVSLESCSN
Trigger: GTTAGAACAGCTCTCAAGAGAAACTTTCATTCCTCTGTCCACCCACTCCACCAGCCCAGGGCCCCTGACCTTAGGTGATGCTCGGACGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 90 bp AATATTCACACCCAAGGGTTGTACTTCCTGGGGAAGCTCTTCTCCTaGGGCTTGGAAGCAGAGATGGTGTCCCTCAGGAGAGTCCAGGCC +
Preference number: 1 (lower is better)
Translates to: NIHTQGLYFLGKLFS*GLEAEMVSLRRVQA
Trigger: GGCCTGGACTCTCCTGAGGGACACCATCTCTGCTTCCAAGCCCCAGGAGAAGAGCTTCCCCAGGAAGTACAACCCTTGGGTGTGAATATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169927.2
3UTR CCA 90 bp AGACAGAAATGGAATGTGATGTCCGCCTCTTGCCGCAATCCTCCGTaGCTCAGGTTTTCCTGCCCACTCCTCTCTGTTCACCTCCTGATC +
Preference number: 1 (lower is better)
Translates to: RQKWNVMSASCRNPP*LRFSCPLLSVHLLI
Trigger: GATCAGGAGGTGAACAGAGAGGAGTGGGCAGGAAAACCTGAGCCACGGAGGATTGCGGCAAGAGGCGGACATCACATTCCATTTCTGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR GCA 90 bp AATATTCACACCCAAGGAGGGGAGAACCTGACACCCTCCCCTGCCTaGTGTCCATACAAGGAAGACATCCAGGCTCAGCAGAACATGGAT +
Preference number: 1 (lower is better)
Translates to: NIHTQGGENLTPSPA*CPYKEDIQAQQNMD
Trigger: ATCCATGTTCTGCTGAGCCTGGATGTCTTCCTTGTATGGACAGCAGGCAGGGGAGGGTGTCAGGTTCTCCCCTCCTTGGGTGTGAATATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR GCA 90 bp TTTGGTGGTTCTGAGGCTCTGGGTGAACTATCAAGTCTCCAGAGCTaGACTGGGCAGAGCCCAGCTTTGGAAATTGAGCCTGAGGAAGGA +
Preference number: 1 (lower is better)
Translates to: FGGSEALGELSSLQS*TGQSPALEIEPEEG
Trigger: TCCTTCCTCAGGCTCAATTTCCAAAGCTGGGCTCTGCCCAGTGCAGCTCTGGAGACTTGATAGTTCACCCAGAGCCTCAGAACCACCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 90 bp TGTGTAAGTCTAAGGACAACATGTCAGGTCTCTCCTTCTACCCCGTaGGTCCCAGGGACTGAACTCAGGGTGGTAAGCTTGGTGACAAGC +
Preference number: 1 (lower is better)
Translates to: CVSLRTTCQVSPSTP*VPGTELRVVSLVTS
Trigger: GCTTGTCACCAAGCTTACCACCCTGAGTTCAGTCCCTGGGACCCACGGGGTAGAAGGAGAGACCTGACATGTTGTCCTTAGACTTACACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 90 bp GGTGAGTGGCTGGACCTACTCCTTCAGTTACCTCTACTGAGAGTGTaGTGTCAAAGAGAAGATTGCGAGAGAAGAATCCACCTCCCAGGC +
Preference number: 1 (lower is better)
Translates to: GEWLDLLLQLPLLRV*CQREDCERRIHLPG
Trigger: GCCTGGGAGGTGGATTCTTCTCTCGCAATCTTCTCTTTGACACCACACTCTCAGTAGAGGTAACTGAAGGAGTAGGTCCAGCCACTCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 90 bp CTAAAGAGCAACAGAGGCAGAGACTGGGACAAGGAGACAGGTGAGTaGCTGGACCTACTCCTTCAGTTACCTCTACTGAGAGTGTGGTGT +
Preference number: 1 (lower is better)
Translates to: LKSNRGRDWDKETGE*LDLLLQLPLLRVWC
Trigger: ACACCACACTCTCAGTAGAGGTAACTGAAGGAGTAGGTCCAGCCACTCACCTGTCTCCTTGTCCCAGTCTCTGCCTCTGTTGCTCTTTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 90 bp TCCTTGAGAGCCAGGGACACCTTACCTCCAACTGAAGGAAGAGCCTaGAATCAAGACTTGGAGTCAATATTCACACCCAAGGAGGGGAGA +
Preference number: 1 (lower is better)
Translates to: SLRARDTLPPTEGRA*NQDLESIFTPKEGR
Trigger: TCTCCCCTCCTTGGGTGTGAATATTGACTCCAAGTCTTGATTCCAGGCTCTTCCTTCAGTTGGAGGTAAGGTGTCCCTGGCTCTCAAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR CCA 90 bp TCTTACAGCTTCTGCCACACACTAAAGAGCAACAGAGGCAGAGACTaGGACAAGGAGACAGGTGAGTGGCTGGACCTACTCCTTCAGTTA +
Preference number: 1 (lower is better)
Translates to: SYSFCHTLKSNRGRD*DKETGEWLDLLLQL
Trigger: TAACTGAAGGAGTAGGTCCAGCCACTCACCTGTCTCCTTGTCCCAGTCTCTGCCTCTGTTGCTCTTTAGTGTGTGGCAGAAGCTGTAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR TCA 90 bp ACAAGGAAGACATCCAGGCTCAGCAGAACATGGATTGGTCCCACCTaGGACCTCCACAAAAGCCTACACTCTATTTGCAACACAGCTCCT +
Preference number: 1 (lower is better)
Translates to: TRKTSRLSRTWIGPT*DLHKSLHSICNTAP
Trigger: AGGAGCTGTGTTGCAAATAGAGTGTAGGCTTTTGTGGAGGTCTCAGGTGGGACCAATCCATGTTCTGCTGAGCCTGGATGTCTTCCTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR TCA 90 bp GGAGCCTTTTGGATATTTAAATGCCAGCAAGGCACTTTCTCACACTaGAGACAGCAGTCTCCTTTGGTCTGGTCTGGTCTGGTCTGGTCT +
Preference number: 1 (lower is better)
Translates to: GAFWIFKCQQGTFSH*RQQSPLVWSGLVWS
Trigger: AGACCAGACCAGACCAGACCAGACCAAAGGAGACTGCTGTCTTCAGTGTGAGAAAGTGCCTTGCTGGCATTTAAATATCCAAAAGGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR CCA 90 bp TCCTTGAGAGCCAGGGACACCTTACCTCCAACTGAAGGAAGAGCCTaGAATCAAGACTTGGAGTCAATATTCACACCCAAGGGTTGTACT +
Preference number: 1 (lower is better)
Translates to: SLRARDTLPPTEGRA*NQDLESIFTPKGCT
Trigger: AGTACAACCCTTGGGTGTGAATATTGACTCCAAGTCTTGATTCCAGGCTCTTCCTTCAGTTGGAGGTAAGGTGTCCCTGGCTCTCAAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169927.2
3UTR GCA 90 bp CTCCTTCAGTTACCTCTACTGAGAGTGTGGTGTCAAAGAGAAGATTaGGAGAGAAGAATCCACCTCCCAGGCATAAAATGTCACTGGAGA +
Preference number: 1 (lower is better)
Translates to: LLQLPLLRVWCQRED*ERRIHLPGIKCHWR
Trigger: TCTCCAGTGACATTTTATGCCTGGGAGGTGGATTCTTCTCTCGCAATCTTCTCTTTGACACCACACTCTCAGTAGAGGTAACTGAAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR TCA 90 bp TACCTGCAGGCCCCCTCCATCAGACGCTGGGTCCAGACCCAGGATCAGGCCTGGAAGGAGGGGAGAACCTaGCACCCTCCCCTGCCTGCT +
Preference number: 2 (lower is better)
Translates to: YLQAPSIRRWVQTQDQAWKEGRT*HPPLPA
Trigger: AGCAGGCAGGGGAGGGTGTCAGGTTCTCCCCTCCTT...CCAGGCCTGATCCTGGGTCTGGACCCAGCGTCTGATGGAGGGGGCCTGCAGGTA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000086465.6
3UTR-3UTR CCA 90 bp GTGACCCCAAGTACCGTGCCGTCTCCGAGCAAGGGGTCTGCACCCTGGAGATCCGGTTTGGTTGCCCTCTaGCAGTGCTGGGGTGCCAGC +
Preference number: 2 (lower is better)
Translates to: VTPSTVPSPSKGSAPWRSGLVAL*QCWGAS
Trigger: GCTGGCACCCCAGCACTGCCAGAGGGCAACCAAACC...GGATCTCCAGGGTGCAGACCCCTTGCTCGGAGACGGCACGGTACTTGGGGTCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp TTCTGCAGCGTCCGAGCATCACCTAAGGTCAGGGGCCCTGGGCTGGTGGAGTGGAAGGGGTCTGCACCCTaGAGATCCGGAAGCCCAGCC +
Preference number: 2 (lower is better)
Translates to: FCSVRASPKVRGPGLVEWKGSAP*RSGSPA
Trigger: GGCTGGGCTTCCGGATCTCCAGGGTGCAGACCCCTT...CCACTCCACCAGCCCAGGGCCCCTGACCTTAGGTGATGCTCGGACGCTGCAGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR TCA 90 bp ACCCCAAGTACCGTGCCGTCTCCGAGCAAGGGGTCTGCACCCTGGAGATCCGGAAGCCTGAGGAAGGACTaGGAAGGGTGGAGGTGGTTC +
Preference number: 2 (lower is better)
Translates to: TPSTVPSPSKGSAPWRSGSLRKD*EGWRWF
Trigger: GAACCACCTCCACCCTTCTCAGTCCTTCCTCAGGCT...TCCGGATCTCCAGGGTGCAGACCCCTTGCTCGGAGACGGCACGGTACTTGGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR TCA 90 bp TTCTGCAGCGTCCGAGCATCACCTAAGGTCAGGGGCCCTGGGCTGGTGGAGTGGGGACAAGGAGACAGGTaGGTGGCTGGACCTACTCCT +
Preference number: 2 (lower is better)
Translates to: FCSVRASPKVRGPGLVEWGQGDR*VAGPTP
Trigger: AGGAGTAGGTCCAGCCACTCACCTGTCTCCTTGTCC...CCACTCCACCAGCCCAGGGCCCCTGACCTTAGGTGATGCTCGGACGCTGCAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp AAGCTTGGTGACAAGCACCCTCACCCGCTGAGCCACCTCACTCACCCTAGAAGCGTTGCCCTCTGGCAGTaGTGGGGTGCCAGCACCCCA +
Preference number: 2 (lower is better)
Translates to: KLGDKHPHPLSHLTHPRSVALWQ*WGASTP
Trigger: TGGGGTGCTGGCACCCCAGCACTGCCAGAGGGCAAC...GCTTCTAGGGTGAGTGAGGTGGCTCAGCGGGTGAGGGTGCTTGTCACCAAGCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp GTGACCCCAAGTACCGTGCCGTCTCCGAGCAAGGGGTCTGCACCCTGGAGATCCTGTAGCACTGGGTCATaGTGGGGAGGTCCAGAAGGG +
Preference number: 2 (lower is better)
Translates to: VTPSTVPSPSKGSAPWRSCSTGS*WGGPEG
Trigger: CCCTTCTGGACCTCCCCAGCATGACCCAGTGCTACA...GGATCTCCAGGGTGCAGACCCCTTGCTCGGAGACGGCACGGTACTTGGGGTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp AAGCTTGGTGACAAGCACCCTCACCCGCTGAGCCACCTCACTCACCCTAGAAGCGGGGCCCTGGGCTGGTaGAGTGGGTGGACAGAGGAA +
Preference number: 2 (lower is better)
Translates to: KLGDKHPHPLSHLTHPRSGALGW*SGWTEE
Trigger: TTCCTCTGTCCACCCACTCCACCAGCCCAGGGCCCC...GCTTCTAGGGTGAGTGAGGTGGCTCAGCGGGTGAGGGTGCTTGTCACCAAGCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR TCA 90 bp TACCTGCAGGCCCCCTCCATCAGACGCTGGGTCCAGACCCAGGATCAGGCCTGGTGGATTGGTCCCACCTaGGACCTCCACAAAAGCCTA +
Preference number: 2 (lower is better)
Translates to: YLQAPSIRRWVQTQDQAWWIGPT*DLHKSL
Trigger: TAGGCTTTTGTGGAGGTCTCAGGTGGGACCAATCCA...CCAGGCCTGATCCTGGGTCTGGACCCAGCGTCTGATGGAGGGGGCCTGCAGGTA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086465.6
3UTR-3UTR TCA 90 bp TCTTGCCGCAATCCTCCGTGGCTCAGGTTTTCCTGCCCACTCCTCTCTGTTCACCACCCAGCCCCTGGCTaGCCATACCTCCACTCCTGG +
Preference number: 2 (lower is better)
Translates to: SCRNPPWLRFSCPLLSVHHPAPG*PYLHSW
Trigger: CCAGGAGTGGAGGTATGGTCAGCCAGGGGCTGGGTG...GTGAACAGAGAGGAGTGGGCAGGAAAACCTGAGCCACGGAGGATTGCGGCAAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp TTCTGCAGCGTCCGAGCATCACCTAAGGTCAGGGGCCCTGGGCTGGTGGAGTGGTCTTCTCCTGGGGCTTaGAAGCAGAGATGGTGTCCC +
Preference number: 2 (lower is better)
Translates to: FCSVRASPKVRGPGLVEWSSPGA*KQRWCP
Trigger: GGGACACCATCTCTGCTTCCAAGCCCCAGGAGAAGA...CCACTCCACCAGCCCAGGGCCCCTGACCTTAGGTGATGCTCGGACGCTGCAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp GTGACCCCAAGTACCGTGCCGTCTCCGAGCAAGGGGTCTGCACCCTGGAGATCCTCTTCTCCTGGGGCTTaGAAGCAGAGATGGTGTCCC +
Preference number: 2 (lower is better)
Translates to: VTPSTVPSPSKGSAPWRSSSPGA*KQRWCP
Trigger: GGGACACCATCTCTGCTTCCAAGCCCCAGGAGAAGA...GGATCTCCAGGGTGCAGACCCCTTGCTCGGAGACGGCACGGTACTTGGGGTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp GTGACCCCAAGTACCGTGCCGTCTCCGAGCAAGGGGTCTGCACCCTGGAGATCCGATGGGTACTCTGGGTaGTGGTCACAGGTCAGCATC +
Preference number: 2 (lower is better)
Translates to: VTPSTVPSPSKGSAPWRSDGYSG*WSQVSI
Trigger: GATGCTGACCTGTGACCACCACCCAGAGTACCCATC...GGATCTCCAGGGTGCAGACCCCTTGCTCGGAGACGGCACGGTACTTGGGGTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR TCA 90 bp TGGATTGTCGGCTGGAGGTTAAAGGTGGGAGTCGGAAGGGTGCCCTCAGCACCCCAAGTCCTGCAGACCTaGGGATCAGGACCCCAGGAA +
Preference number: 2 (lower is better)
Translates to: WIVGWRLKVGVGRVPSAPQVLQT*GSGPQE
Trigger: TTCCTGGGGTCCTGATCCTCAGGTCTGCAGGACTTG...GGGTGCTGAGGGCACCCTTCCGACTCCCACCTTTAACCTCCAGCCGACAATCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR TCA 90 bp CAGGGTGGTAAGCTTGGTGACAAGCACCCTCACCCGCTGAGCCACCTCACTCACGGACAAGGAGACAGGTaGGTGGCTGGACCTACTCCT +
Preference number: 2 (lower is better)
Translates to: QGGKLGDKHPHPLSHLTHGQGDR*VAGPTP
Trigger: AGGAGTAGGTCCAGCCACTCACCTGTCTCCTTGTCC...GTGAGTGAGGTGGCTCAGCGGGTGAGGGTGCTTGTCACCAAGCTTACCACCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp ACCCCAAGTACCGTGCCGTCTCCGAGCAAGGGGTCTGCACCCTGGAGATCCGGAGACTTTATGGCCCACTaGGAGTCCCAGGCTGTGAAT +
Preference number: 2 (lower is better)
Translates to: TPSTVPSPSKGSAPWRSGDFMAH*ESQAVN
Trigger: ATTCACAGCCTGGGACTCCCAGTGGGCCATAAAGTC...TCCGGATCTCCAGGGTGCAGACCCCTTGCTCGGAGACGGCACGGTACTTGGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp TTCTGCAGCGTCCGAGCATCACCTAAGGTCAGGGGCCCTGGGCTGGTGGAGTGGCAGACACACCATCTCTaGGACTTTCCATCTGCCTCC +
Preference number: 2 (lower is better)
Translates to: FCSVRASPKVRGPGLVEWQTHHL*DFPSAS
Trigger: GGAGGCAGATGGAAAGTCCCAGAGATGGTGTGTCTG...CCACTCCACCAGCCCAGGGCCCCTGACCTTAGGTGATGCTCGGACGCTGCAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp GGTGGTAAGCTTGGTGACAAGCACCCTCACCCGCTGAGCCACCTCACTCACCCTTTCCCTGCTATGGCCTaGCCCAACTCCAAACCTCCT +
Preference number: 2 (lower is better)
Translates to: GGKLGDKHPHPLSHLTHPFPAMA*PNSKPP
Trigger: AGGAGGTTTGGAGTTGGGGCAGGCCATAGCAGGGAA...AGGGTGAGTGAGGTGGCTCAGCGGGTGAGGGTGCTTGTCACCAAGCTTACCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp TTCTCCTGGGGCTTGGAAGCAGAGATGGTGTCCCTCAGGAGAGTCCAGGCCTGCCCCAGCTCTCTGAACTaGTCAGAGAACAGCCAGGAA +
Preference number: 2 (lower is better)
Translates to: FSWGLEAEMVSLRRVQACPSSLN*SENSQE
Trigger: TTCCTGGCTGTTCTCTGAGCAGTTCAGAGAGCTGGG...GCAGGCCTGGACTCTCCTGAGGGACACCATCTCTGCTTCCAAGCCCCAGGAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp CATGCTCCCAAGGGTTGTACTTCCTGGGGAAGCTCTTCTCCTGGGGCTTGGAAGGCAAGAAGGGCTCAGTaGTGCTCCCTGCTGGCTATG +
Preference number: 2 (lower is better)
Translates to: HAPKGCTSWGSSSPGAWKARRAQ*CSLLAM
Trigger: CATAGCCAGCAGGGAGCAGCACTGAGCCCTTCTTGC...CTTCCAAGCCCCAGGAGAAGAGCTTCCCCAGGAAGTACAACCCTTGGGAGCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR-3UTR GCA 90 bp TACCTGCAGGCCCCCTCCATCAGACGCTGGGTCCAGACCCAGGATCAGGCCTGGAGCCTACACTCTATTTaGAACACAGCTCCTGAGCTA +
Preference number: 2 (lower is better)
Translates to: YLQAPSIRRWVQTQDQAWSLHSI*NTAPEL
Trigger: TAGCTCAGGAGCTGTGTTGCAAATAGAGTGTAGGCT...CCAGGCCTGATCCTGGGTCTGGACCCAGCGTCTGATGGAGGGGGCCTGCAGGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086465.6
3UTR-3UTR CCA 90 bp GGATGGGTACTCTGGGTGGTGGTCACAGGTCAGCATCTGGGCTTGGCTCTGAGTGGAACAGGGAGGACATaGGGGTTGAACAGAGAGCCA +
Preference number: 2 (lower is better)
Translates to: GWVLWVVVTGQHLGLALSGTGRT*GLNREP
Trigger: TGGCTCTCTGTTCAACCCCCATGTCCTCCCTGTTCC...ACTCAGAGCCAAGCCCAGATGCTGACCTGTGACCACCACCCAGAGTACCCATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp GGTGGTAAGCTTGGTGACAAGCACCCTCACCCGCTGAGCCACCTCACTCACCCTGACTTTATGGCCCACTaGGAGTCCCAGGCTGTGAAT +
Preference number: 2 (lower is better)
Translates to: GGKLGDKHPHPLSHLTHPDFMAH*ESQAVN
Trigger: ATTCACAGCCTGGGACTCCCAGTGGGCCATAAAGTC...AGGGTGAGTGAGGTGGCTCAGCGGGTGAGGGTGCTTGTCACCAAGCTTACCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp GACAGTGTAGCACTGGGTCATGCTGGGGAGGTCCAGAAGGGATGGGTACTCTGGGCTTGGAAGCAGAGATaGTGTCCCTCAGGAGAGTCC +
Preference number: 2 (lower is better)
Translates to: DSVALGHAGEVQKGWVLWAWKQR*CPSGES
Trigger: GGACTCTCCTGAGGGACACCATCTCTGCTTCCAAGC...CCAGAGTACCCATCCCTTCTGGACCTCCCCAGCATGACCCAGTGCTACACTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp ACATCTTCTCCGCTGAGGTGGTTTGGTTGCCCTCTGGCAGTGCTGGGGTGCCAGGACAGCAGTCTCCTTTaGTCTGGTCTGGTCTGGTCT +
Preference number: 2 (lower is better)
Translates to: TSSPLRWFGCPLAVLGCQDSSLL*SGLVWS
Trigger: AGACCAGACCAGACCAGACCAAAGGAGACTGCTGTC...CTGGCACCCCAGCACTGCCAGAGGGCAACCAAACCACCTCAGCGGAGAAGATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR-3UTR CCA 90 bp TGGATTGTCGGCTGGAGGTTAAAGGTGGGAGTCGGAAGGGTGCCCTCAGCACCCGACAGCAGTCTCCTTTaGTCTGGTCTGGTCTGGTCT +
Preference number: 2 (lower is better)
Translates to: WIVGWRLKVGVGRVPSAPDSSLL*SGLVWS
Trigger: AGACCAGACCAGACCAGACCAAAGGAGACTGCTGTC...GGGTGCTGAGGGCACCCTTCCGACTCCCACCTTTAACCTCCAGCCGACAATCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086465.6
3UTR-3UTR CCA 90 bp CAGGGTGGTAAGCTTGGTGACAAGCACCCTCACCCGCTGAGCCACCTCACTCACGGCAGAGCCCAGCTTTaGAAATTGAGCCTGAGGAAG +
Preference number: 2 (lower is better)
Translates to: QGGKLGDKHPHPLSHLTHGRAQL*KLSLRK
Trigger: CTTCCTCAGGCTCAATTTCCAAAGCTGGGCTCTGCC...GTGAGTGAGGTGGCTCAGCGGGTGAGGGTGCTTGTCACCAAGCTTACCACCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR TCA 90 bp CATGCTCCCAAGGGTTGTACTTCCTGGGGAAGCTCTTCTCCTGGGGCTTGGAAGCTAACCCCAGCTCTCTaGACTGCTCAGAGAACAGCC +
Preference number: 2 (lower is better)
Translates to: HAPKGCTSWGSSSPGAWKLTPAL*TAQRTA
Trigger: GGCTGTTCTCTGAGCAGTTCAGAGAGCTGGGGTTAG...CTTCCAAGCCCCAGGAGAAGAGCTTCCCCAGGAAGTACAACCCTTGGGAGCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR-3UTR TCA 90 bp AGTGTAGCACTGGGTCATGCTGGGGAGGTCCAGAAGGGATGGGTACTCTGGGTGCTGTCTTCCTCACTTTaGAGTTGGTCCCTTGGGCCA +
Preference number: 2 (lower is better)
Translates to: SVALGHAGEVQKGWVLWVLSSSL*SWSLGP
Trigger: TGGCCCAAGGGACCAACTTCAAAGTGAGGAAGACAG...CACCCAGAGTACCCATCCCTTCTGGACCTCCCCAGCATGACCCAGTGCTACACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp AGCACGCAGCTTTTCTGCAGCGTCCGAGCATCACCTAAGGTCAGGGGCCCTGGGGCCCAGACAGAAAATTaGATTGGAGACTCCCAGGAA +
Preference number: 2 (lower is better)
Translates to: STQLFCSVRASPKVRGPGAQTEN*IGDSQE
Trigger: TTCCTGGGAGTCTCCAATGCAATTTTCTGTCTGGGC...CCCAGGGCCCCTGACCTTAGGTGATGCTCGGACGCTGCAGAAAAGCTGCGTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp AAGCTTGGTGACAAGCACCCTCACCCGCTGAGCCACCTCACTCACCCTAGAAGCTGGCTCAGGTTTTCCTaGCCACTCCTCTCTGTTCAC +
Preference number: 2 (lower is better)
Translates to: KLGDKHPHPLSHLTHPRSWLRFS*PLLSVH
Trigger: GTGAACAGAGAGGAGTGGGCAGGAAAACCTGAGCCA...GCTTCTAGGGTGAGTGAGGTGGCTCAGCGGGTGAGGGTGCTTGTCACCAAGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp ACATCTTCTCCGCTGAGGTGGTTTGGTTGCCCTCTGGCAGTGCTGGGGTGCCAGGTGCCCAGGAGCACCTaGGATCTTCTTAGATGCTTT +
Preference number: 2 (lower is better)
Translates to: TSSPLRWFGCPLAVLGCQVPRST*DLLRCF
Trigger: AAAGCATCTAAGAAGATCCCAGGTGCTCCTGGGCAC...CTGGCACCCCAGCACTGCCAGAGGGCAACCAAACCACCTCAGCGGAGAAGATGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR-3UTR CCA 90 bp GACAGTGTAGCACTGGGTCATGCTGGGGAGGTCCAGAAGGGATGGGTACTCTGGCAGACACACCATCTCTaGGACTTTCCATCTGCCTCC +
Preference number: 2 (lower is better)
Translates to: DSVALGHAGEVQKGWVLWQTHHL*DFPSAS
Trigger: GGAGGCAGATGGAAAGTCCCAGAGATGGTGTGTCTG...CCAGAGTACCCATCCCTTCTGGACCTCCCCAGCATGACCCAGTGCTACACTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp AGGTTGAATGTCTCAAAGTTTTGGGTTGAGGCCAGTCTTCCGAAGCCTCCTGCAACCCAGGATCAGGCCTaGCAGGCCCCAGGCCATACC +
Preference number: 2 (lower is better)
Translates to: RLNVSKFWVEASLPKPPATQDQA*QAPGHT
Trigger: GGTATGGCCTGGGGCCTGCCAGGCCTGATCCTGGGT...TGCAGGAGGCTTCGGAAGACTGGCCTCAACCCAAAACTTTGAGACATTCAACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp CCCCTGGCTGACCATACCTCCACTCCTGGCTATAGCACGCAGCTTTTCTGCAGCAAGGAGACAGGTGAGTaGCTGGACCTACTCCTTCAG +
Preference number: 2 (lower is better)
Translates to: PLADHTSTPGYSTQLFCSKETGE*LDLLLQ
Trigger: CTGAAGGAGTAGGTCCAGCCACTCACCTGTCTCCTT...GCTGCAGAAAAGCTGCGTGCTATAGCCAGGAGTGGAGGTATGGTCAGCCAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp TCTTGCCGCAATCCTCCGTGGCTCAGGTTTTCCTGCCCACTCCTCTCTGTTCACCCTGGGCTGGTGGAGTaGGTGGACAGAGGAATGAAA +
Preference number: 2 (lower is better)
Translates to: SCRNPPWLRFSCPLLSVHPGLVE*VDRGMK
Trigger: TTTCATTCCTCTGTCCACCCACTCCACCAGCCCAGG...GTGAACAGAGAGGAGTGGGCAGGAAAACCTGAGCCACGGAGGATTGCGGCAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CAA 90 bp AGGGTGCCCTCAGCACCCTGCTGTAGTGGACAGACTGAGTCCCTCTaGGGAGCTGGACTAGATGTAGTTCAGAGTGAAACTGGAGCAGGA +
Preference number: 2 (lower is better)
Translates to: RVPSAPCCSGQTESL*GAGLDVVQSETGAG
Trigger: TCCTGCTCCAGTTTCACTCTGAACTACATCTAGTCCAGCTCCCAAGAGGGACTCAGTCTGTCCACTACAGCAGGGTGCTGAGGGCACCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR TCA 90 bp TGCCTGCTGTCCATACAAGGAAGACATCCAGGCTCAGCAGAACATGGATTGGTCGACTCTCCTCTCACCTaGGGGCACCCAATTCCCTGC +
Preference number: 2 (lower is better)
Translates to: CLLSIQGRHPGSAEHGLVDSPLT*GHPIPC
Trigger: GCAGGGAATTGGGTGCCCTCAGGTGAGAGGAGAGTC...GACCAATCCATGTTCTGCTGAGCCTGGATGTCTTCCTTGTATGGACAGCAGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR-3UTR TCA 90 bp AGAGTTGGTGAAGCTTGGTGGCCCAGACAGAAAATTGCATTGGAGACTCCCAGGGACTCTCCTCTCACCTaGGGGCACCCAATTCCCTGC +
Preference number: 2 (lower is better)
Translates to: RVGEAWWPRQKIALETPRDSPLT*GHPIPC
Trigger: GCAGGGAATTGGGTGCCCTCAGGTGAGAGGAGAGTC...CCTGGGAGTCTCCAATGCAATTTTCTGTCTGGGCCACCAAGCTTCACCAACTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR TCA 90 bp CCCCTGGCTGACCATACCTCCACTCCTGGCTATAGCACGCAGCTTTTCTGCAGCGGTGCTGGAAATTCTTaGCCTCAAACCTCTCCGTTC +
Preference number: 2 (lower is better)
Translates to: PLADHTSTPGYSTQLFCSGAGNS*PQTSPF
Trigger: GAACGGAGAGGTTTGAGGTCAAGAATTTCCAGCACC...GCTGCAGAAAAGCTGCGTGCTATAGCCAGGAGTGGAGGTATGGTCAGCCAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp GGTGGTTCTCTACCCGACTCCCCACTATCTCTTCTAGCAGCTTGGTCACATACCCTGGGACTTTCCATCTaGCTCCACAGCCCTCTCCCA +
Preference number: 2 (lower is better)
Translates to: GGSLPDSPLSLLAAWSHTLGLSI*LHSPLP
Trigger: TGGGAGAGGGCTGTGGAGGCAGATGGAAAGTCCCAG...GGTATGTGACCAAGCTGCTAGAAGAGATAGTGGGGAGTCGGGTAGAGAACCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp AGCACGCAGCTTTTCTGCAGCGTCCGAGCATCACCTAAGGTCAGGGGCCCTGGGTCAAGATTAGAAAAGTaGCAGCAGGAAGGGTCTCAC +
Preference number: 2 (lower is better)
Translates to: STQLFCSVRASPKVRGPGSRLEK*QQEGSH
Trigger: GTGAGACCCTTCCTGCTGGCACTTTTCTAATCTTGA...CCCAGGGCCCCTGACCTTAGGTGATGCTCGGACGCTGCAGAAAAGCTGCGTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp ACATCTTCTCCGCTGAGGTGGTTTGGTTGCCCTCTGGCAGTGCTGGGGTGCCAGGTGAGAGACAATCCCTaGACCCATTCTTTCTGTGTC +
Preference number: 2 (lower is better)
Translates to: TSSPLRWFGCPLAVLGCQVRDNP*THSFCV
Trigger: GACACAGAAAGAATGGGTCCAGGGATTGTCTCTCAC...CTGGCACCCCAGCACTGCCAGAGGGCAACCAAACCACCTCAGCGGAGAAGATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp TCTTGCCGCAATCCTCCGTGGCTCAGGTTTTCCTGCCCACTCCTCTCTGTTCACAGAAGGGGCAGAGACTaGCACCCTCTTCAGAGTTGT +
Preference number: 2 (lower is better)
Translates to: SCRNPPWLRFSCPLLSVHRRGRD*HPLQSC
Trigger: ACAACTCTGAAGAGGGTGCCAGTCTCTGCCCCTTCT...GTGAACAGAGAGGAGTGGGCAGGAAAACCTGAGCCACGGAGGATTGCGGCAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp GACAGTGTAGCACTGGGTCATGCTGGGGAGGTCCAGAAGGGATGGGTACTCTGGGTGGTTCTGAGGCTCTaGGTGAACTATCAAGTCTCC +
Preference number: 2 (lower is better)
Translates to: DSVALGHAGEVQKGWVLWVVLRL*VNYQVS
Trigger: GGAGACTTGATAGTTCACCCAGAGCCTCAGAACCAC...CCAGAGTACCCATCCCTTCTGGACCTCCCCAGCATGACCCAGTGCTACACTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CAA 90 bp GCTCTGAGAGTTGGTGAAGCTTGGTGGCCCAGACAGAAAATTGCATaGGAGACTCCCAGGAAGTTCAGGGCAAGAAGGGCTCAGTGCTGC +
Preference number: 2 (lower is better)
Translates to: ALRVGEAWWPRQKIA*ETPRKFRARRAQCC
Trigger: GCAGCACTGAGCCCTTCTTGCCCTGAACTTCCTGGGAGTCTCCAATGCAATTTTCTGTCTGGGCCACCAAGCTTCACCAACTCTCAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR TCA 90 bp ACCCCAAGTACCGTGCCGTCTCCGAGCAAGGGGTCTGCACCCTGGAGATCCGGACAAGAACTGTTTGTGTaGCTTTCTAAGTGGGAAGAT +
Preference number: 2 (lower is better)
Translates to: TPSTVPSPSKGSAPWRSGQELFV*LSKWED
Trigger: ATCTTCCCACTTAGAAAGTCACACAAACAGTTCTTG...TCCGGATCTCCAGGGTGCAGACCCCTTGCTCGGAGACGGCACGGTACTTGGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR TCA 90 bp TCTTGCCGCAATCCTCCGTGGCTCAGGTTTTCCTGCCCACTCCTCTCTGTTCACTTCATTACCCTCCTCTaGCTTTGCTTCCAGCCCAAG +
Preference number: 2 (lower is better)
Translates to: SCRNPPWLRFSCPLLSVHFITLL*LCFQPK
Trigger: CTTGGGCTGGAAGCAAAGTCAGAGGAGGGTAATGAA...GTGAACAGAGAGGAGTGGGCAGGAAAACCTGAGCCACGGAGGATTGCGGCAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp ATCCAGGCTCAGCAGAACATGGATTGGTCCCACCTGAGACCTCCACAAAAGCCTCAAGAACACAATCCTTaGAGGAGGGGCCGAGGTCTC +
Preference number: 2 (lower is better)
Translates to: IQAQQNMDWSHLRPPQKPQEHNP*RRGRGL
Trigger: GAGACCTCGGCCCCTCCTCCAAGGATTGTGTTCTTG...AGGCTTTTGTGGAGGTCTCAGGTGGGACCAATCCATGTTCTGCTGAGCCTGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR-3UTR CCA 90 bp CATCCAGGCTCAGCAGAACATGGATTGGTCCCACCTGAGACCTCCACAAAAGCCGACTTTATGGCCCACTaGGAGTCCCAGGCTGTGAAT +
Preference number: 2 (lower is better)
Translates to: HPGSAEHGLVPPETSTKADFMAH*ESQAVN
Trigger: ATTCACAGCCTGGGACTCCCAGTGGGCCATAAAGTC...GGCTTTTGTGGAGGTCTCAGGTGGGACCAATCCATGTTCTGCTGAGCCTGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR-3UTR CCA 90 bp AGCACGCAGCTTTTCTGCAGCGTCCGAGCATCACCTAAGGTCAGGGGCCCTGGGGACAGAAAATTGCATTaGAGACTCCCAGGAAGTTCA +
Preference number: 2 (lower is better)
Translates to: STQLFCSVRASPKVRGPGDRKLH*RLPGSS
Trigger: TGAACTTCCTGGGAGTCTCCAATGCAATTTTCTGTC...CCCAGGGCCCCTGACCTTAGGTGATGCTCGGACGCTGCAGAAAAGCTGCGTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp AGTGTAGCACTGGGTCATGCTGGGGAGGTCCAGAAGGGATGGGTACTCTGGGTGGTTGGTGAAGCTTGGTaGCCCAGACAGAAAATTGCA +
Preference number: 2 (lower is better)
Translates to: SVALGHAGEVQKGWVLWVVGEAW*PRQKIA
Trigger: TGCAATTTTCTGTCTGGGCCACCAAGCTTCACCAAC...CACCCAGAGTACCCATCCCTTCTGGACCTCCCCAGCATGACCCAGTGCTACACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp TCTACCCGACTCCCCACTATCTCTTCTAGCAGCTTGGTCACATACCAGGACGCAGCTTGGAAGCAGAGATaGTGTCCCTCAGGAGAGTCC +
Preference number: 2 (lower is better)
Translates to: STRLPTISSSSLVTYQDAAWKQR*CPSGES
Trigger: GGACTCTCCTGAGGGACACCATCTCTGCTTCCAAGC...TGCGTCCTGGTATGTGACCAAGCTGCTAGAAGAGATAGTGGGGAGTCGGGTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp ACATCTTCTCCGCTGAGGTGGTTTGGTTGCCCTCTGGCAGTGCTGGGGTGCCAGACTGAAGGAAGAGCCTaGAATCAAGACTTGGAGTCA +
Preference number: 2 (lower is better)
Translates to: TSSPLRWFGCPLAVLGCQTEGRA*NQDLES
Trigger: TGACTCCAAGTCTTGATTCCAGGCTCTTCCTTCAGT...CTGGCACCCCAGCACTGCCAGAGGGCAACCAAACCACCTCAGCGGAGAAGATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp TGGATTGTCGGCTGGAGGTTAAAGGTGGGAGTCGGAAGGGTGCCCTCAGCACCCACTGAAGGAAGAGCCTaGAATCAAGACTTGGAGTCA +
Preference number: 2 (lower is better)
Translates to: WIVGWRLKVGVGRVPSAPTEGRA*NQDLES
Trigger: TGACTCCAAGTCTTGATTCCAGGCTCTTCCTTCAGT...GGGTGCTGAGGGCACCCTTCCGACTCCCACCTTTAACCTCCAGCCGACAATCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp AGGTTGAATGTCTCAAAGTTTTGGGTTGAGGCCAGTCTTCCGAAGCCTCCTGCACCCTCCATCAGACGCTaGGTCCAGACCCAGGATCAG +
Preference number: 2 (lower is better)
Translates to: RLNVSKFWVEASLPKPPAPSIRR*VQTQDQ
Trigger: CTGATCCTGGGTCTGGACCCAGCGTCTGATGGAGGG...TGCAGGAGGCTTCGGAAGACTGGCCTCAACCCAAAACTTTGAGACATTCAACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp CAGGGTGGTAAGCTTGGTGACAAGCACCCTCACCCGCTGAGCCACCTCACTCACCCTCTACTGAGAGTGTaGTGTCAAAGAGAAGATTGC +
Preference number: 2 (lower is better)
Translates to: QGGKLGDKHPHPLSHLTHPLLRV*CQREDC
Trigger: GCAATCTTCTCTTTGACACCACACTCTCAGTAGAGG...GTGAGTGAGGTGGCTCAGCGGGTGAGGGTGCTTGTCACCAAGCTTACCACCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp TGGCCCAGACAGAAAATTGCATTGGAGACTCCCAGGAAGTTCAGGGCAAGAAGGTTCCCTGCTATGGCCTaGCCCAACTCCAAACCTCCT +
Preference number: 2 (lower is better)
Translates to: WPRQKIALETPRKFRARRFPAMA*PNSKPP
Trigger: AGGAGGTTTGGAGTTGGGGCAGGCCATAGCAGGGAA...CCTTCTTGCCCTGAACTTCCTGGGAGTCTCCAATGCAATTTTCTGTCTGGGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp CATTACATCTTCTCCGCTGAGGTGGTTTGGTTGCCCTCTGGCAGTGCTGGGGTGGCCCAGACAGAAAATTaGATTGGAGACTCCCAGGAA +
Preference number: 2 (lower is better)
Translates to: HYIFSAEVVWLPSGSAGVAQTEN*IGDSQE
Trigger: TTCCTGGGAGTCTCCAATGCAATTTTCTGTCTGGGC...CACCCCAGCACTGCCAGAGGGCAACCAAACCACCTCAGCGGAGAAGATGTAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp GGAAGATGTTCTTTCTATTTGGGGACTGGGGTGCTGGAAATTCTTGACCTCAAAGTTGCCCTCTGGCAGTaGTGGGGTGCCAGCACCCCA +
Preference number: 2 (lower is better)
Translates to: GRCSFYLGTGVLEILDLKVALWQ*WGASTP
Trigger: TGGGGTGCTGGCACCCCAGCACTGCCAGAGGGCAAC...TTTGAGGTCAAGAATTTCCAGCACCCCAGTCCCCAAATAGAAAGAACATCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp AGGTTGAATGTCTCAAAGTTTTGGGTTGAGGCCAGTCTTCCGAAGCCTCCTGCATCAAGTCTCCAGAGCTaGACTGGGCAGAGCCCAGCT +
Preference number: 2 (lower is better)
Translates to: RLNVSKFWVEASLPKPPASSLQS*TGQSPA
Trigger: AGCTGGGCTCTGCCCAGTGCAGCTCTGGAGACTTGA...TGCAGGAGGCTTCGGAAGACTGGCCTCAACCCAAAACTTTGAGACATTCAACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp GTGACCCCAAGTACCGTGCCGTCTCCGAGCAAGGGGTCTGCACCCTGGAGATCCAAAAGACAGAGAGCATaGATGTTTAGTTTGGTGAAG +
Preference number: 2 (lower is better)
Translates to: VTPSTVPSPSKGSAPWRSKRQRA*MFSLVK
Trigger: CTTCACCAAACTAAACATGCATGCTCTCTGTCTTTT...GGATCTCCAGGGTGCAGACCCCTTGCTCGGAGACGGCACGGTACTTGGGGTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp TGGCCCAGACAGAAAATTGCATTGGAGACTCCCAGGAAGTTCAGGGCAAGAAGGGGAACAGGGAGGACATaGGGGTTGAACAGAGAGCCA +
Preference number: 2 (lower is better)
Translates to: WPRQKIALETPRKFRARRGTGRT*GLNREP
Trigger: TGGCTCTCTGTTCAACCCCCATGTCCTCCCTGTTCC...CCTTCTTGCCCTGAACTTCCTGGGAGTCTCCAATGCAATTTTCTGTCTGGGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp TGGCCCAGACAGAAAATTGCATTGGAGACTCCCAGGAAGTTCAGGGCAAGAAGGCAAGAACACAATCCTTaGAGGAGGGGCCGAGGTCTC +
Preference number: 2 (lower is better)
Translates to: WPRQKIALETPRKFRARRQEHNP*RRGRGL
Trigger: GAGACCTCGGCCCCTCCTCCAAGGATTGTGTTCTTG...CCTTCTTGCCCTGAACTTCCTGGGAGTCTCCAATGCAATTTTCTGTCTGGGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp GGTGGTAAGCTTGGTGACAAGCACCCTCACCCGCTGAGCCACCTCACTCACCCTCCTCCAGGAGCCTTTTaGATATTTAAATGCCAGCAA +
Preference number: 2 (lower is better)
Translates to: GGKLGDKHPHPLSHLTHPPPGAF*IFKCQQ
Trigger: TTGCTGGCATTTAAATATCCAAAAGGCTCCTGGAGG...AGGGTGAGTGAGGTGGCTCAGCGGGTGAGGGTGCTTGTCACCAAGCTTACCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086465.6
3UTR-3UTR CCA 90 bp AGGTTGAATGTCTCAAAGTTTTGGGTTGAGGCCAGTCTTCCGAAGCCTCCTGCAAGCACTGGGTCATGCTaGGGAGGTCCAGAAGGGATG +
Preference number: 2 (lower is better)
Translates to: RLNVSKFWVEASLPKPPASTGSC*GGPEGM
Trigger: CATCCCTTCTGGACCTCCCCAGCATGACCCAGTGCT...TGCAGGAGGCTTCGGAAGACTGGCCTCAACCCAAAACTTTGAGACATTCAACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CAA 90 bp CTCCCCACAGGGCTTCACAATCTTTTATTAGACATAGGGTCCTCCTaGAGAGCCAGGGACACCTTACCTCCAACTGAAGGAAGAGCCTGG +
Preference number: 2 (lower is better)
Translates to: LPTGLHNLLLDIGSS*RARDTLPPTEGRAW
Trigger: CCAGGCTCTTCCTTCAGTTGGAGGTAAGGTGTCCCTGGCTCTCAAGGAGGACCCTATGTCTAATAAAAGATTGTGAAGCCCTGTGGGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CAA 90 bp CTCATTAGGAAAGTAGGGACCCAGTCCTTGCTCTCCCTTCCTCGTTaGGTGGTTCTGAGGCTCTGGGTGAACTATCAAGTCTCCAGAGCT +
Preference number: 2 (lower is better)
Translates to: LIRKVGTQSLLSLPR*VVLRLWVNYQVSRA
Trigger: AGCTCTGGAGACTTGATAGTTCACCCAGAGCCTCAGAACCACCAAACGAGGAAGGGAGAGCAAGGACTGGGTCCCTACTTTCCTAATGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR TCA 90 bp AGGTTGAATGTCTCAAAGTTTTGGGTTGAGGCCAGTCTTCCGAAGCCTCCTGCACTAACCCCAGCTCTCTaGACTGCTCAGAGAACAGCC +
Preference number: 2 (lower is better)
Translates to: RLNVSKFWVEASLPKPPALTPAL*TAQRTA
Trigger: GGCTGTTCTCTGAGCAGTTCAGAGAGCTGGGGTTAG...TGCAGGAGGCTTCGGAAGACTGGCCTCAACCCAAAACTTTGAGACATTCAACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp AGAGTTGGTGAAGCTTGGTGGCCCAGACAGAAAATTGCATTGGAGACTCCCAGGCCCAGCTCTCTGAACTaGTCAGAGAACAGCCAGGAA +
Preference number: 2 (lower is better)
Translates to: RVGEAWWPRQKIALETPRPSSLN*SENSQE
Trigger: TTCCTGGCTGTTCTCTGAGCAGTTCAGAGAGCTGGG...CCTGGGAGTCTCCAATGCAATTTTCTGTCTGGGCCACCAAGCTTCACCAACTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp AGCGAAGCGGCGGCATATCCATTTCTCTCTATTCATCCACCTCTAAGGGACTGTGGAACAGGGAGGACATaGGGGTTGAACAGAGAGCCA +
Preference number: 2 (lower is better)
Translates to: SEAAAYPFLSIHPPLRDCGTGRT*GLNREP
Trigger: TGGCTCTCTGTTCAACCCCCATGTCCTCCCTGTTCC...ACAGTCCCTTAGAGGTGGATGAATAGAGAGAAATGGATATGCCGCCGCTTCGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CAA 90 bp AAGGGATGGGTACTCTGGGTGGTGGTCACAGGTCAGCATCTGGGCTaGGCTCTGAGTGACTGTAAACAGCATTCTTTTCCCTCATTAGGA +
Preference number: 2 (lower is better)
Translates to: KGWVLWVVVTGQHLG*ALSDCKQHSFPSLG
Trigger: TCCTAATGAGGGAAAAGAATGCTGTTTACAGTCACTCAGAGCCAAGCCCAGATGCTGACCTGTGACCACCACCCAGAGTACCCATCCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR TCA 90 bp TACCTCCAACTGAAGGAAGAGCCTGGAATCAAGACTTGGAGTCAATATTCACACGACTCTCCTCTCACCTaGGGGCACCCAATTCCCTGC +
Preference number: 2 (lower is better)
Translates to: YLQLKEEPGIKTWSQYSHDSPLT*GHPIPC
Trigger: GCAGGGAATTGGGTGCCCTCAGGTGAGAGGAGAGTC...GTGTGAATATTGACTCCAAGTCTTGATTCCAGGCTCTTCCTTCAGTTGGAGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR TCA 90 bp TGCCTGCTGTCCATACAAGGAAGACATCCAGGCTCAGCAGAACATGGATTGGTCGCTCCCCTGTCTGACTaGAGGAGCCAGAATATTCTA +
Preference number: 2 (lower is better)
Translates to: CLLSIQGRHPGSAEHGLVAPLSD*RSQNIL
Trigger: TAGAATATTCTGGCTCCTTCAGTCAGACAGGGGAGC...GACCAATCCATGTTCTGCTGAGCCTGGATGTCTTCCTTGTATGGACAGCAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR-3UTR TCA 90 bp GAGACAATCCCTGGACCCATTCTTTCTGTGTCTCCCAAGTATAACCCTGGGCTTCTGTCTTCCTCACTTTaGAGTTGGTCCCTTGGGCCA +
Preference number: 2 (lower is better)
Translates to: ETIPGPILSVSPKYNPGLLSSSL*SWSLGP
Trigger: TGGCCCAAGGGACCAACTTCAAAGTGAGGAAGACAG...AAGCCCAGGGTTATACTTGGGAGACACAGAAAGAATGGGTCCAGGGATTGTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp ACTCCTTCAGTTACCTCTACTGAGAGTGTGGTGTCAAAGAGAAGATTGCGAGAGTGTAGCACTGGGTCATaGTGGGGAGGTCCAGAAGGG +
Preference number: 2 (lower is better)
Translates to: TPSVTSTESVVSKRRLRECSTGS*WGGPEG
Trigger: CCCTTCTGGACCTCCCCAGCATGACCCAGTGCTACA...CTCTCGCAATCTTCTCTTTGACACCACACTCTCAGTAGAGGTAACTGAAGGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp TGGATTGTCGGCTGGAGGTTAAAGGTGGGAGTCGGAAGGGTGCCCTCAGCACCCAAAAGACAGAGAGCATaGATGTTTAGTTTGGTGAAG +
Preference number: 2 (lower is better)
Translates to: WIVGWRLKVGVGRVPSAPKRQRA*MFSLVK
Trigger: CTTCACCAAACTAAACATGCATGCTCTCTGTCTTTT...GGGTGCTGAGGGCACCCTTCCGACTCCCACCTTTAACCTCCAGCCGACAATCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp TCTACCCGACTCCCCACTATCTCTTCTAGCAGCTTGGTCACATACCAGGACGCAGTGAGAGACAATCCCTaGACCCATTCTTTCTGTGTC +
Preference number: 2 (lower is better)
Translates to: STRLPTISSSSLVTYQDAVRDNP*THSFCV
Trigger: GACACAGAAAGAATGGGTCCAGGGATTGTCTCTCAC...TGCGTCCTGGTATGTGACCAAGCTGCTAGAAGAGATAGTGGGGAGTCGGGTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR TCA 90 bp GGTGGTTCTCTACCCGACTCCCCACTATCTCTTCTAGCAGCTTGGTCACATACCCTGGATCTTGCTTTCTaGTTCACAATGTGCTACCCT +
Preference number: 2 (lower is better)
Translates to: GGSLPDSPLSLLAAWSHTLDLAF*FTMCYP
Trigger: AGGGTAGCACATTGTGAATCAGAAAGCAAGATCCAG...GGTATGTGACCAAGCTGCTAGAAGAGATAGTGGGGAGTCGGGTAGAGAACCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR TCA 90 bp AAGCTTGGTGACAAGCACCCTCACCCGCTGAGCCACCTCACTCACCCTAGAAGCAATACTATGTTACTATaGAGGGGAGACACTATCAAG +
Preference number: 2 (lower is better)
Translates to: KLGDKHPHPLSHLTHPRSNTMLL*RGDTIK
Trigger: CTTGATAGTGTCTCCCCTTCATAGTAACATAGTATT...GCTTCTAGGGTGAGTGAGGTGGCTCAGCGGGTGAGGGTGCTTGTCACCAAGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp AAGCCACCTCCAGGAGCCTTTTGGATATTTAAATGCCAGCAAGGCACTTTCTCAGCTTGGAAGCAGAGATaGTGTCCCTCAGGAGAGTCC +
Preference number: 2 (lower is better)
Translates to: KPPPGAFWIFKCQQGTFSAWKQR*CPSGES
Trigger: GGACTCTCCTGAGGGACACCATCTCTGCTTCCAAGC...TGAGAAAGTGCCTTGCTGGCATTTAAATATCCAAAAGGCTCCTGGAGGTGGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR-3UTR CCA 90 bp AGAAGGGGCAGAGACTGGCACCCTCTTCAGAGTTGTACACTGTATGAGAAGTATCAGTCTCCTTTGGTCTaGTCTGGTCTGGTCTGGTCT +
Preference number: 2 (lower is better)
Translates to: RRGRDWHPLQSCTLYEKYQSPLV*SGLVWS
Trigger: AGACCAGACCAGACCAGACCAGACCAAAGGAGACTG...ATACTTCTCATACAGTGTACAACTCTGAAGAGGGTGCCAGTCTCTGCCCCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086465.6
3UTR-3UTR TCA 90 bp GTGAGCATTTTGTGTTTAAAAAGGAAAGCCACTCAGGTCTCAGAGGCAGACAGATGCTCTGAGAGTTGGTaGAGCTTGGTGGCCCAGACA +
Preference number: 2 (lower is better)
Translates to: VSILCLKRKATQVSEADRCSESW*SLVAQT
Trigger: TGTCTGGGCCACCAAGCTTCACCAACTCTCAGAGCA...TCTGTCTGCCTCTGAGACCTGAGTGGCTTTCCTTTTTAAACACAAAATGCTCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp TGGCCCAGACAGAAAATTGCATTGGAGACTCCCAGGAAGTTCAGGGCAAGAAGGGAGGCCAGCACCTTCTaGACTATTTTTATTCCCAAG +
Preference number: 2 (lower is better)
Translates to: WPRQKIALETPRKFRARREASTF*TIFIPK
Trigger: CTTGGGAATAAAAATAGTGCAGAAGGTGCTGGCCTC...CCTTCTTGCCCTGAACTTCCTGGGAGTCTCCAATGCAATTTTCTGTCTGGGCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp TTTGGATATTTAAATGCCAGCAAGGCACTTTCTCACACTGAAGACAGCAGTCTCTTCCCTGCTATGGCCTaGCCCAACTCCAAACCTCCT +
Preference number: 2 (lower is better)
Translates to: FGYLNASKALSHTEDSSLFPAMA*PNSKPP
Trigger: AGGAGGTTTGGAGTTGGGGCAGGCCATAGCAGGGAA...GAGACTGCTGTCTTCAGTGTGAGAAAGTGCCTTGCTGGCATTTAAATATCCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR-3UTR CCA 90 bp AGAAGGGGCAGAGACTGGCACCCTCTTCAGAGTTGTACACTGTATGAGAAGTATGTGAGAGACAATCCCTaGACCCATTCTTTCTGTGTC +
Preference number: 2 (lower is better)
Translates to: RRGRDWHPLQSCTLYEKYVRDNP*THSFCV
Trigger: GACACAGAAAGAATGGGTCCAGGGATTGTCTCTCAC...ATACTTCTCATACAGTGTACAACTCTGAAGAGGGTGCCAGTCTCTGCCCCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp AAGCCACCTCCAGGAGCCTTTTGGATATTTAAATGCCAGCAAGGCACTTTCTCAGTGCCCAGGAGCACCTaGGATCTTCTTAGATGCTTT +
Preference number: 2 (lower is better)
Translates to: KPPPGAFWIFKCQQGTFSVPRST*DLLRCF
Trigger: AAAGCATCTAAGAAGATCCCAGGTGCTCCTGGGCAC...TGAGAAAGTGCCTTGCTGGCATTTAAATATCCAAAAGGCTCCTGGAGGTGGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR CAA 90 bp ACTCCTTCAGTTACCTCTACTGAGAGTGTGGTGTCAAAGAGAAGATaGCGAGAGAAGAATCCACCTCCCAGGCATAAAATGTCACTGGAG +
Preference number: 2 (lower is better)
Translates to: TPSVTSTESVVSKRR*REKNPPPRHKMSLE
Trigger: CTCCAGTGACATTTTATGCCTGGGAGGTGGATTCTTCTCTCGCAATCTTCTCTTTGACACCACACTCTCAGTAGAGGTAACTGAAGGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CAA 90 bp GCCATACTCTTTAACATCAGCCAGAGTGTCACAGCCGTGAGCATTTaGTGTTTAAAAAGGAAAGCCACTCAGGTCTCAGAGGCAGACAGA +
Preference number: 2 (lower is better)
Translates to: AILFNISQSVTAVSI*CLKRKATQVSEADR
Trigger: TCTGTCTGCCTCTGAGACCTGAGTGGCTTTCCTTTTTAAACACAAAATGCTCACGGCTGTGACACTCTGGCTGATGTTAAAGAGTATGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR TCA 90 bp GGAAGATGTTCTTTCTATTTGGGGACTGGGGTGCTGGAAATTCTTGACCTCAAAGCTCCCCTGTCTGACTaGAGGAGCCAGAATATTCTA +
Preference number: 2 (lower is better)
Translates to: GRCSFYLGTGVLEILDLKAPLSD*RSQNIL
Trigger: TAGAATATTCTGGCTCCTTCAGTCAGACAGGGGAGC...TTTGAGGTCAAGAATTTCCAGCACCCCAGTCCCCAAATAGAAAGAACATCTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp TACCTCCAACTGAAGGAAGAGCCTGGAATCAAGACTTGGAGTCAATATTCACACTGGGATCTTCTTAGATaGTTTCCTCTCCCTCCTCCC +
Preference number: 2 (lower is better)
Translates to: YLQLKEEPGIKTWSQYSHWDLLR*FPLPPP
Trigger: GGGAGGAGGGAGAGGAAAGCATCTAAGAAGATCCCA...GTGTGAATATTGACTCCAAGTCTTGATTCCAGGCTCTTCCTTCAGTTGGAGGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR-3UTR CCA 90 bp CTACTCCTTCAGTTACCTCTACTGAGAGTGTGGTGTCAAAGAGAAGATTGCGAGGTTGGTGAAGCTTGGTaGCCCAGACAGAAAATTGCA +
Preference number: 2 (lower is better)
Translates to: LLLQLPLLRVWCQREDCEVGEAW*PRQKIA
Trigger: TGCAATTTTCTGTCTGGGCCACCAAGCTTCACCAAC...CTCGCAATCTTCTCTTTGACACCACACTCTCAGTAGAGGTAACTGAAGGAGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp GTGAGCATTTTGTGTTTAAAAAGGAAAGCCACTCAGGTCTCAGAGGCAGACAGAGTGGTTCTGAGGCTCTaGGTGAACTATCAAGTCTCC +
Preference number: 2 (lower is better)
Translates to: VSILCLKRKATQVSEADRVVLRL*VNYQVS
Trigger: GGAGACTTGATAGTTCACCCAGAGCCTCAGAACCAC...TCTGTCTGCCTCTGAGACCTGAGTGGCTTTCCTTTTTAAACACAAAATGCTCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR TCA 90 bp AAAGCAGTAGGCAGATCTGGGTACCATTTTTGTAGCAAAAGACAGAGAGCATGCATCTGGGCTTGGCTCTaGGTGACTGTAAACAGCATT +
Preference number: 2 (lower is better)
Translates to: KAVGRSGYHFCSKRQRACIWAWL*VTVNSI
Trigger: AATGCTGTTTACAGTCACTCAGAGCCAAGCCCAGAT...GCATGCTCTCTGTCTTTTGCTACAAAAATGGTACCCAGATCTGCCTACTGCTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR GCA 90 bp TACCTCCAACTGAAGGAAGAGCCTGGAATCAAGACTTGGAGTCAATATTCACACGAGGCCAGCACCTTCTaGACTATTTTTATTCCCAAG +
Preference number: 2 (lower is better)
Translates to: YLQLKEEPGIKTWSQYSHEASTF*TIFIPK
Trigger: CTTGGGAATAAAAATAGTGCAGAAGGTGCTGGCCTC...GTGTGAATATTGACTCCAAGTCTTGATTCCAGGCTCTTCCTTCAGTTGGAGGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CCA 90 bp GGAAGATGTTCTTTCTATTTGGGGACTGGGGTGCTGGAAATTCTTGACCTCAAAGACAGAAAATTGCATTaGAGACTCCCAGGAAGTTCA +
Preference number: 2 (lower is better)
Translates to: GRCSFYLGTGVLEILDLKDRKLH*RLPGSS
Trigger: TGAACTTCCTGGGAGTCTCCAATGCAATTTTCTGTC...TTTGAGGTCAAGAATTTCCAGCACCCCAGTCCCCAAATAGAAAGAACATCTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR TCA 90 bp CTACTCCTTCAGTTACCTCTACTGAGAGTGTGGTGTCAAAGAGAAGATTGCGAGAATACTATGTTACTATaGAGGGGAGACACTATCAAG +
Preference number: 2 (lower is better)
Translates to: LLLQLPLLRVWCQREDCENTMLL*RGDTIK
Trigger: CTTGATAGTGTCTCCCCTTCATAGTAACATAGTATT...CTCGCAATCTTCTCTTTGACACCACACTCTCAGTAGAGGTAACTGAAGGAGTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 72 bp CAGGATCAGGCCTGGCAGGCCCCAGGCCATACCTTCTaGGTTCAAGAGGGCCCAGAAGGGGCAGAGACTGGC +
Preference number: 3 (lower is better)
Translates to: QDQAWQAPGHTF*VQEGPEGAETG
Trigger: GCCAGTCTCTGCCCCTTCTGGGCCCTCTTGAACCCAGAAGGTATGGCCTGGGGCCTGCCAGGCCTGATCCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CAA 90 bp ACCCCAAGTACCGTGCCGTCTCCGAGCAAGGGGTCTGCACCCTGGAGATCCGGAGCTGAGGTGGTTTGGTaGCCCTCTGGCAGTGCTGGG +
Preference number: 3 (lower is better)
Translates to: TPSTVPSPSKGSAPWRSGAEVVW*PSGSAG
Trigger: CCCAGCACTGCCAGAGGGCAACCAAACCACCTCAGC...TCCGGATCTCCAGGGTGCAGACCCCTTGCTCGGAGACGGCACGGTACTTGGGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CAA 90 bp TTCTGCAGCGTCCGAGCATCACCTAAGGTCAGGGGCCCTGGGCTGGTGGAGTGGCTCTCCCTTCCTCGTTaGGTGGTTCTGAGGCTCTGG +
Preference number: 3 (lower is better)
Translates to: FCSVRASPKVRGPGLVEWLSLPR*VVLRLW
Trigger: CCAGAGCCTCAGAACCACCAAACGAGGAAGGGAGAG...CCACTCCACCAGCCCAGGGCCCCTGACCTTAGGTGATGCTCGGACGCTGCAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 72 bp CACCCCCACCATTACATCTTCTCCGCTGAGGTGGTTTaGTTGCCCTCTGGCAGTGCTGGGGTGCCAGCACCC +
Preference number: 3 (lower is better)
Translates to: HPHHYIFSAEVV*LPSGSAGVPAP
Trigger: GGGTGCTGGCACCCCAGCACTGCCAGAGGGCAACCAAACCACCTCAGCGGAGAAGATGTAATGGTGGGGGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 72 bp CCCTCCACCCCCACCATTACATCTTCTCCGCTGAGGTaGTTTGGTTGCCCTCTGGCAGTGCTGGGGTGCCAG +
Preference number: 3 (lower is better)
Translates to: PSTPTITSSPLR*FGCPLAVLGCQ
Trigger: CTGGCACCCCAGCACTGCCAGAGGGCAACCAAACCACCTCAGCGGAGAAGATGTAATGGTGGGGGTGGAGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR GCA 72 bp CCCACCATTACATCTTCTCCGCTGAGGTGGTTTGGTTaGCCTCTGGCAGTGCTGGGGTGCCAGCACCCCACT +
Preference number: 3 (lower is better)
Translates to: PTITSSPLRWFG*PLAVLGCQHPT
Trigger: AGTGGGGTGCTGGCACCCCAGCACTGCCAGAGGGCAACCAAACCACCTCAGCGGAGAAGATGTAATGGTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 72 bp GGTCATGCTGGGGAGGTCCAGAAGGGATGGGTACTCTaGGTGGTGGTCACAGGTCAGCATCTGGGCTTGGCT +
Preference number: 3 (lower is better)
Translates to: GHAGEVQKGWVL*VVVTGQHLGLA
Trigger: AGCCAAGCCCAGATGCTGACCTGTGACCACCACCCAGAGTACCCATCCCTTCTGGACCTCCCCAGCATGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 72 bp GAGACTTCTCAGAAGCGCCCTCGTTCACCCAGCCCCTaGCTGACCATACCTCCACTCCTGGCTATAGCACGC +
Preference number: 3 (lower is better)
Translates to: ETSQKRPRSPSP*LTIPPLLAIAR
Trigger: GCGTGCTATAGCCAGGAGTGGAGGTATGGTCAGCCAGGGGCTGGGTGAACGAGGGCGCTTCTGAGAAGTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CAA 90 bp GGTGGTAAGCTTGGTGACAAGCACCCTCACCCGCTGAGCCACCTCACTCACCCTCTCTTCTCCTGGGGCTaGGAAGCAGAGATGGTGTCC +
Preference number: 3 (lower is better)
Translates to: GGKLGDKHPHPLSHLTHPLFSWG*EAEMVS
Trigger: GGACACCATCTCTGCTTCCAAGCCCCAGGAGAAGAG...AGGGTGAGTGAGGTGGCTCAGCGGGTGAGGGTGCTTGTCACCAAGCTTACCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR GCA 72 bp ACCCAAGGAGGGGAGAACCTGACACCCTCCCCTGCCTaGTGTCCATACAAGGAAGACATCCAGGCTCAGCAG +
Preference number: 3 (lower is better)
Translates to: TQGGENLTPSPA*CPYKEDIQAQQ
Trigger: CTGCTGAGCCTGGATGTCTTCCTTGTATGGACAGCAGGCAGGGGAGGGTGTCAGGTTCTCCCCTCCTTGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR CCA 72 bp CCCCTCAGGCAGCATGCTCCCAAGGGTTGTACTTCCTaGGGAAGCTCTTCTCCTGGGGCTTGGAAGCAGAGA +
Preference number: 3 (lower is better)
Translates to: PLRQHAPKGCTS*GSSSPGAWKQR
Trigger: TCTCTGCTTCCAAGCCCCAGGAGAAGAGCTTCCCCAGGAAGTACAACCCTTGGGAGCATGCTGCCTGAGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR CCA 72 bp TGGTCTGGTCTGGTCTGGTCTGGTCTTTCACACTTCTaGGCACACCAGAGGTGCCCAGGAGCACCTGGGATC +
Preference number: 3 (lower is better)
Translates to: WSGLVWSGLSHF*AHQRCPGAPGI
Trigger: GATCCCAGGTGCTCCTGGGCACCTCTGGTGTGCCCAGAAGTGTGAAAGACCAGACCAGACCAGACCAGACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR-3UTR CAA 90 bp CATGCTCCCAAGGGTTGTACTTCCTGGGGAAGCTCTTCTCCTGGGGCTTGGAAGGGGAGGACATGGGGGTaGAACAGAGAGCCACTGGGT +
Preference number: 3 (lower is better)
Translates to: HAPKGCTSWGSSSPGAWKGRTWG*NREPLG
Trigger: ACCCAGTGGCTCTCTGTTCAACCCCCATGTCCTCCC...CTTCCAAGCCCCAGGAGAAGAGCTTCCCCAGGAAGTACAACCCTTGGGAGCATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR-3UTR CAA 90 bp TCTTGCCGCAATCCTCCGTGGCTCAGGTTTTCCTGCCCACTCCTCTCTGTTCACGGGAGGACATGGGGGTaGAACAGAGAGCCACTGGGT +
Preference number: 3 (lower is better)
Translates to: SCRNPPWLRFSCPLLSVHGRTWG*NREPLG
Trigger: ACCCAGTGGCTCTCTGTTCAACCCCCATGTCCTCCC...GTGAACAGAGAGGAGTGGGCAGGAAAACCTGAGCCACGGAGGATTGCGGCAAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CAA 90 bp TGGATTGTCGGCTGGAGGTTAAAGGTGGGAGTCGGAAGGGTGCCCTCAGCACCCGACATAGGGTCCTCCTaGAGAGCCAGGGACACCTTA +
Preference number: 3 (lower is better)
Translates to: WIVGWRLKVGVGRVPSAPDIGSS*RARDTL
Trigger: TAAGGTGTCCCTGGCTCTCAAGGAGGACCCTATGTC...GGGTGCTGAGGGCACCCTTCCGACTCCCACCTTTAACCTCCAGCCGACAATCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CAA 90 bp GACAGTGTAGCACTGGGTCATGCTGGGGAGGTCCAGAAGGGATGGGTACTCTGGGTAGGGACCCAGTCCTaGCTCTCCCTTCCTCGTTTG +
Preference number: 3 (lower is better)
Translates to: DSVALGHAGEVQKGWVLWVGTQS*LSLPRL
Trigger: CAAACGAGGAAGGGAGAGCAAGGACTGGGTCCCTAC...CCAGAGTACCCATCCCTTCTGGACCTCCCCAGCATGACCCAGTGCTACACTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CAA 90 bp CAGGGTGGTAAGCTTGGTGACAAGCACCCTCACCCGCTGAGCCACCTCACTCACGGCCCAGACAGAAAATaGCATTGGAGACTCCCAGGA +
Preference number: 3 (lower is better)
Translates to: QGGKLGDKHPHPLSHLTHGPDRK*HWRLPG
Trigger: TCCTGGGAGTCTCCAATGCAATTTTCTGTCTGGGCC...GTGAGTGAGGTGGCTCAGCGGGTGAGGGTGCTTGTCACCAAGCTTACCACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CAA 90 bp CATTACATCTTCTCCGCTGAGGTGGTTTGGTTGCCCTCTGGCAGTGCTGGGGTGCTCTTCTCCTGGGGCTaGGAAGCAGAGATGGTGTCC +
Preference number: 3 (lower is better)
Translates to: HYIFSAEVVWLPSGSAGVLFSWG*EAEMVS
Trigger: GGACACCATCTCTGCTTCCAAGCCCCAGGAGAAGAG...CACCCCAGCACTGCCAGAGGGCAACCAAACCACCTCAGCGGAGAAGATGTAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CAA 90 bp GTGACCCCAAGTACCGTGCCGTCTCCGAGCAAGGGGTCTGCACCCTGGAGATCCGCCTGGAATCAAGACTaGGAGTCAATATTCACACCC +
Preference number: 3 (lower is better)
Translates to: VTPSTVPSPSKGSAPWRSAWNQD*ESIFTP
Trigger: GGGTGTGAATATTGACTCCAAGTCTTGATTCCAGGC...GGATCTCCAGGGTGCAGACCCCTTGCTCGGAGACGGCACGGTACTTGGGGTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CAA 90 bp AGCACGCAGCTTTTCTGCAGCGTCCGAGCATCACCTAAGGTCAGGGGCCCTGGGGGGTGCTGGAAATTCTaGACCTCAAACCTCTCCGTT +
Preference number: 3 (lower is better)
Translates to: STQLFCSVRASPKVRGPGGCWKF*TSNLSV
Trigger: AACGGAGAGGTTTGAGGTCAAGAATTTCCAGCACCC...CCCAGGGCCCCTGACCTTAGGTGATGCTCGGACGCTGCAGAAAAGCTGCGTGCT
58% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CAA 90 bp ACCCCAAGTACCGTGCCGTCTCCGAGCAAGGGGTCTGCACCCTGGAGATCCGGAAGATGTTCTTTCTATTaGGGGACTGGGGTGCTGGAA +
Preference number: 3 (lower is better)
Translates to: TPSTVPSPSKGSAPWRSGRCSFY*GTGVLE
Trigger: TTCCAGCACCCCAGTCCCCAAATAGAAAGAACATCT...TCCGGATCTCCAGGGTGCAGACCCCTTGCTCGGAGACGGCACGGTACTTGGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CAA 90 bp TTCTGCAGCGTCCGAGCATCACCTAAGGTCAGGGGCCCTGGGCTGGTGGAGTGGGGGGTCAAGAACTGTTaGTGTGACTTTCTAAGTGGG +
Preference number: 3 (lower is better)
Translates to: FCSVRASPKVRGPGLVEWGVKNC*CDFLSG
Trigger: CCCACTTAGAAAGTCACACAAACAGTTCTTGACCCC...CCACTCCACCAGCCCAGGGCCCCTGACCTTAGGTGATGCTCGGACGCTGCAGAA
58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR TCA 72 bp TCAGGTCTCTCCTTCTACCCCGTGGGTCCCAGGGACTaGACTCAGGGTGGTAAGCTTGGTGACAAGCACCCT +
Preference number: 3 (lower is better)
Translates to: SGLSFYPVGPRD*TQGGKLGDKHP
Trigger: AGGGTGCTTGTCACCAAGCTTACCACCCTGAGTTCAGTCCCTGGGACCCACGGGGTAGAAGGAGAGACCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR GCA 72 bp TCACACCCAAGGAGGGGAGAACCTGACACCCTCCCCTaGCTGCTGTCCATACAAGGAAGACATCCAGGCTCA +
Preference number: 3 (lower is better)
Translates to: SHPRRGEPDTLP*LLSIQGRHPGS
Trigger: TGAGCCTGGATGTCTTCCTTGTATGGACAGCAGGCAGGGGAGGGTGTCAGGTTCTCCCCTCCTTGGGTGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR GCA 72 bp TTAAAGGTGGGAGTCGGAAGGGTGCCCTCAGCACCCTaGTGTAGTGGACAGACTGAGTCCCTCTTGGGAGCT +
Preference number: 3 (lower is better)
Translates to: LKVGVGRVPSAP*CSGQTESLLGA
Trigger: AGCTCCCAAGAGGGACTCAGTCTGTCCACTACAGCAGGGTGCTGAGGGCACCCTTCCGACTCCCACCTTTAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CAA 90 bp GGGGAAGCTCTTCTCCTGGGGCTTGGAAGCAGAGATGGTGTCCCTCAGGAGAGTGGCCCAGACAGAAAATaGCATTGGAGACTCCCAGGA +
Preference number: 3 (lower is better)
Translates to: GEALLLGLGSRDGVPQESGPDRK*HWRLPG
Trigger: TCCTGGGAGTCTCCAATGCAATTTTCTGTCTGGGCC...ACTCTCCTGAGGGACACCATCTCTGCTTCCAAGCCCCAGGAGAAGAGCTTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CAA 90 bp CAGGGTGGTAAGCTTGGTGACAAGCACCCTCACCCGCTGAGCCACCTCACTCACTCTCAAAGTTTTGGGTaGAGGCCAGTCTTCCGAAGC +
Preference number: 3 (lower is better)
Translates to: QGGKLGDKHPHPLSHLTHSQSFG*RPVFRS
Trigger: GCTTCGGAAGACTGGCCTCAACCCAAAACTTTGAGA...GTGAGTGAGGTGGCTCAGCGGGTGAGGGTGCTTGTCACCAAGCTTACCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR TCA 72 bp AGAGCCCAGCTTTGGAAATTGAGCCTGAGGAAGGACTaGGAAGGGTGGAGGTGGTTCTCTACCCGACTCCCC +
Preference number: 3 (lower is better)
Translates to: RAQLWKLSLRKD*EGWRWFSTRLP
Trigger: GGGGAGTCGGGTAGAGAACCACCTCCACCCTTCTCAGTCCTTCCTCAGGCTCAATTTCCAAAGCTGGGCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR TCA 72 bp GCCACTCAGGTCTCAGAGGCAGACAGAAATGGAATGTaGTGTCCGCCTCTTGCCGCAATCCTCCGTGGCTCA +
Preference number: 3 (lower is better)
Translates to: ATQVSEADRNGM*CPPLAAILRGS
Trigger: TGAGCCACGGAGGATTGCGGCAAGAGGCGGACATCACATTCCATTTCTGTCTGCCTCTGAGACCTGAGTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 72 bp TCCCAAGGGTTGTACTTCCTGGGGAAGCTCTTCTCCTaGGGCTTGGAAGCAGAGATGGTGTCCCTCAGGAGA +
Preference number: 3 (lower is better)
Translates to: SQGLYFLGKLFS*GLEAEMVSLRR
Trigger: TCTCCTGAGGGACACCATCTCTGCTTCCAAGCCCCAGGAGAAGAGCTTCCCCAGGAAGTACAACCCTTGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR CCA 72 bp GCATCACCTAAGGTCAGGGGCCCTGGGCTGGTGGAGTaGGTGGACAGAGGAATGAAAGTTTCTCTTGAGAGC +
Preference number: 3 (lower is better)
Translates to: ASPKVRGPGLVE*VDRGMKVSLES
Trigger: GCTCTCAAGAGAAACTTTCATTCCTCTGTCCACCCACTCCACCAGCCCAGGGCCCCTGACCTTAGGTGATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 72 bp TGGAATGTGATGTCCGCCTCTTGCCGCAATCCTCCGTaGCTCAGGTTTTCCTGCCCACTCCTCTCTGTTCAC +
Preference number: 3 (lower is better)
Translates to: WNVMSASCRNPP*LRFSCPLLSVH
Trigger: GTGAACAGAGAGGAGTGGGCAGGAAAACCTGAGCCACGGAGGATTGCGGCAAGAGGCGGACATCACATTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 72 bp ACCCAAGGGTTGTACTTCCTGGGGAAGCTCTTCTCCTaGGGCTTGGAAGCAGAGATGGTGTCCCTCAGGAGA +
Preference number: 3 (lower is better)
Translates to: TQGLYFLGKLFS*GLEAEMVSLRR
Trigger: TCTCCTGAGGGACACCATCTCTGCTTCCAAGCCCCAGGAGAAGAGCTTCCCCAGGAAGTACAACCCTTGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169927.2
3UTR TCA 72 bp AGAGATGGTGTCCCTCAGGAGAGTCCAGGCCTGCTCTaGGAGTTGGTGAAGCTTGGTGGCCCAGACAGAAAA +
Preference number: 3 (lower is better)
Translates to: RDGVPQESPGLL*ELVKLGGPDRK
Trigger: TTTTCTGTCTGGGCCACCAAGCTTCACCAACTCTCAGAGCAGGCCTGGACTCTCCTGAGGGACACCATCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 72 bp GAGTCCAGGCCTGCTCTGAGAGTTGGTGAAGCTTGGTaGCCCAGACAGAAAATTGCATTGGAGACTCCCAGG +
Preference number: 3 (lower is better)
Translates to: ESRPALRVGEAW*PRQKIALETPR
Trigger: CCTGGGAGTCTCCAATGCAATTTTCTGTCTGGGCCACCAAGCTTCACCAACTCTCAGAGCAGGCCTGGACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 72 bp GGAGAGTCCAGGCCTGCTCTGAGAGTTGGTGAAGCTTaGTGGCCCAGACAGAAAATTGCATTGGAGACTCCC +
Preference number: 3 (lower is better)
Translates to: GESRPALRVGEA*WPRQKIALETP
Trigger: GGGAGTCTCCAATGCAATTTTCTGTCTGGGCCACCAAGCTTCACCAACTCTCAGAGCAGGCCTGGACTCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 72 bp CTAAGGACAACATGTCAGGTCTCTCCTTCTACCCCGTaGGTCCCAGGGACTGAACTCAGGGTGGTAAGCTTG +
Preference number: 3 (lower is better)
Translates to: LRTTCQVSPSTP*VPGTELRVVSL
Trigger: CAAGCTTACCACCCTGAGTTCAGTCCCTGGGACCCACGGGGTAGAAGGAGAGACCTGACATGTTGTCCTTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CAA 90 bp ATCCAGGCTCAGCAGAACATGGATTGGTCCCACCTGAGACCTCCACAAAAGCCTAGACAGCAGTCTCCTTaGGTCTGGTCTGGTCTGGTC +
Preference number: 3 (lower is better)
Translates to: IQAQQNMDWSHLRPPQKPRQQSP*VWSGLV
Trigger: GACCAGACCAGACCAGACCAAAGGAGACTGCTGTCT...AGGCTTTTGTGGAGGTCTCAGGTGGGACCAATCCATGTTCTGCTGAGCCTGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR TCA 72 bp TCCCTCAGGAGAGTCCAGGCCTGCTCTGAGAGTTGGTaGAGCTTGGTGGCCCAGACAGAAAATTGCATTGGA +
Preference number: 3 (lower is better)
Translates to: SLRRVQACSESW*SLVAQTENCIG
Trigger: TCCAATGCAATTTTCTGTCTGGGCCACCAAGCTTCACCAACTCTCAGAGCAGGCCTGGACTCTCCTGAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR TCA 72 bp TTGGAGTCAATATTCACACCCAAGGAGGGGAGAACCTaGCACCCTCCCCTGCCTGCTGTCCATACAAGGAAG +
Preference number: 3 (lower is better)
Translates to: LESIFTPKEGRT*HPPLPAVHTRK
Trigger: CTTCCTTGTATGGACAGCAGGCAGGGGAGGGTGTCAGGTTCTCCCCTCCTTGGGTGTGAATATTGACTCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR GCA 72 bp TGGTCTGGTCTTTCACACTTCTGGGCACACCAGAGGTaGCCAGGAGCACCTGGGATCTTCTTAGATGCTTTC +
Preference number: 3 (lower is better)
Translates to: WSGLSHFWAHQR*PGAPGIFLDAF
Trigger: GAAAGCATCTAAGAAGATCCCAGGTGCTCCTGGGCACCTCTGGTGTGCCCAGAAGTGTGAAAGACCAGACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR CCA 72 bp CTTCTGGGTTCAAGAGGGCCCAGAAGGGGCAGAGACTaGCACCCTCTTCAGAGTTGTACACTGTATGAGAAG +
Preference number: 3 (lower is better)
Translates to: LLGSRGPRRGRD*HPLQSCTLYEK
Trigger: CTTCTCATACAGTGTACAACTCTGAAGAGGGTGCCAGTCTCTGCCCCTTCTGGGCCCTCTTGAACCCAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 72 bp AAGGAAAGCCACTCAGGTCTCAGAGGCAGACAGAAATaGAATGTGATGTCCGCCTCTTGCCGCAATCCTCCG +
Preference number: 3 (lower is better)
Translates to: KESHSGLRGRQK*NVMSASCRNPP
Trigger: CGGAGGATTGCGGCAAGAGGCGGACATCACATTCCATTTCTGTCTGCCTCTGAGACCTGAGTGGCTTTCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 72 bp AACAGAGGCAGAGACTGGGACAAGGAGACAGGTGAGTaGCTGGACCTACTCCTTCAGTTACCTCTACTGAGA +
Preference number: 3 (lower is better)
Translates to: NRGRDWDKETGE*LDLLLQLPLLR
Trigger: TCTCAGTAGAGGTAACTGAAGGAGTAGGTCCAGCCACTCACCTGTCTCCTTGTCCCAGTCTCTGCCTCTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CAA 90 bp TACCTCCAACTGAAGGAAGAGCCTGGAATCAAGACTTGGAGTCAATATTCACACGGGAGGACATGGGGGTaGAACAGAGAGCCACTGGGT +
Preference number: 3 (lower is better)
Translates to: YLQLKEEPGIKTWSQYSHGRTWG*NREPLG
Trigger: ACCCAGTGGCTCTCTGTTCAACCCCCATGTCCTCCC...GTGTGAATATTGACTCCAAGTCTTGATTCCAGGCTCTTCCTTCAGTTGGAGGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CAA 90 bp AAGCCACCTCCAGGAGCCTTTTGGATATTTAAATGCCAGCAAGGCACTTTCTCACCAAGAACACAATCCTaGGAGGAGGGGCCGAGGTCT +
Preference number: 3 (lower is better)
Translates to: KPPPGAFWIFKCQQGTFSPRTQS*EEGPRS
Trigger: AGACCTCGGCCCCTCCTCCAAGGATTGTGTTCTTGG...TGAGAAAGTGCCTTGCTGGCATTTAAATATCCAAAAGGCTCCTGGAGGTGGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR TCA 72 bp TTGGGCCACCAACACCTAATAGTAGGCTCCCCTGTCTaGCTGAAGGAGCCAGAATATTCTAACCCCAGCTCT +
Preference number: 3 (lower is better)
Translates to: LGHQHLIVGSPV*LKEPEYSNPSS
Trigger: AGAGCTGGGGTTAGAATATTCTGGCTCCTTCAGTCAGACAGGGGAGCCTACTATTAGGTGTTGGTGGCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR TCA 72 bp TTCTTTCTATTTGGGGACTGGGGTGCTGGAAATTCTTaGCCTCAAACCTCTCCGTTCCCTCCTGTCTTCCCC +
Preference number: 3 (lower is better)
Translates to: FFLFGDWGAGNS*PQTSPFPPVFP
Trigger: GGGGAAGACAGGAGGGAACGGAGAGGTTTGAGGTCAAGAATTTCCAGCACCCCAGTCCCCAAATAGAAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 72 bp TTGGAGTCAATATTCACACCCAAGGGTTGTACTTCCTaGGGAAGCTCTTCTCCTGGGGCTTGGAAGCAGAGA +
Preference number: 3 (lower is better)
Translates to: LESIFTPKGCTS*GSSSPGAWKQR
Trigger: TCTCTGCTTCCAAGCCCCAGGAGAAGAGCTTCCCCAGGAAGTACAACCCTTGGGTGTGAATATTGACTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169927.2
3UTR-3UTR CAA 90 bp GGAAGATGTTCTTTCTATTTGGGGACTGGGGTGCTGGAAATTCTTGACCTCAAACCAAGAACACAATCCTaGGAGGAGGGGCCGAGGTCT +
Preference number: 3 (lower is better)
Translates to: GRCSFYLGTGVLEILDLKPRTQS*EEGPRS
Trigger: AGACCTCGGCCCCTCCTCCAAGGATTGTGTTCTTGG...TTTGAGGTCAAGAATTTCCAGCACCCCAGTCCCCAAATAGAAAGAACATCTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CAA 90 bp AAGCCACCTCCAGGAGCCTTTTGGATATTTAAATGCCAGCAAGGCACTTTCTCAGGCCCAGACAGAAAATaGCATTGGAGACTCCCAGGA +
Preference number: 3 (lower is better)
Translates to: KPPPGAFWIFKCQQGTFSGPDRK*HWRLPG
Trigger: TCCTGGGAGTCTCCAATGCAATTTTCTGTCTGGGCC...TGAGAAAGTGCCTTGCTGGCATTTAAATATCCAAAAGGCTCCTGGAGGTGGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR-3UTR CAA 90 bp TACCTCCAACTGAAGGAAGAGCCTGGAATCAAGACTTGGAGTCAATATTCACACAGACAGCAGTCTCCTTaGGTCTGGTCTGGTCTGGTC +
Preference number: 3 (lower is better)
Translates to: YLQLKEEPGIKTWSQYSHRQQSP*VWSGLV
Trigger: GACCAGACCAGACCAGACCAAAGGAGACTGCTGTCT...GTGTGAATATTGACTCCAAGTCTTGATTCCAGGCTCTTCCTTCAGTTGGAGGTA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR-3UTR CAA 90 bp AAAGCAGTAGGCAGATCTGGGTACCATTTTTGTAGCAAAAGACAGAGAGCATGCGGGCAGAGCCCAGCTTaGGAAATTGAGCCTGAGGAA +
Preference number: 3 (lower is better)
Translates to: KAVGRSGYHFCSKRQRACGQSPA*EIEPEE
Trigger: TTCCTCAGGCTCAATTTCCAAAGCTGGGCTCTGCCC...GCATGCTCTCTGTCTTTTGCTACAAAAATGGTACCCAGATCTGCCTACTGCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR-3UTR CAA 90 bp GTGAGCATTTTGTGTTTAAAAAGGAAAGCCACTCAGGTCTCAGAGGCAGACAGAGGAAGCCCAGCCCCTTaGATTCTGGGGTCTACACTT +
Preference number: 3 (lower is better)
Translates to: VSILCLKRKATQVSEADRGSPAP*ILGSTL
Trigger: AAGTGTAGACCCCAGAATCAAAGGGGCTGGGCTTCC...TCTGTCTGCCTCTGAGACCTGAGTGGCTTTCCTTTTTAAACACAAAATGCTCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR GCA 72 bp CCCAAAGCTCTAACGTGTAGTATCTCTTACAGCTTCTaGCACACACTAAAGAGCAACAGAGGCAGAGACTGG +
Preference number: 3 (lower is better)
Translates to: PKALTCSISYSF*HTLKSNRGRDW
Trigger: CCAGTCTCTGCCTCTGTTGCTCTTTAGTGTGTGGCAGAAGCTGTAAGAGATACTACACGTTAGAGCTTTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR GCA 72 bp AAGTGGGAAGATGTTCTTTCTATTTGGGGACTGGGGTaGTGGAAATTCTTGACCTCAAACCTCTCCGTTCCC +
Preference number: 3 (lower is better)
Translates to: KWEDVLSIWGLG*WKFLTSNLSVP
Trigger: GGGAACGGAGAGGTTTGAGGTCAAGAATTTCCAGCACCCCAGTCCCCAAATAGAAAGAACATCTTCCCACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 72 bp ACAGCTCCTGAGCTAAAGCCACCTCCAGGAGCCTTTTaGATATTTAAATGCCAGCAAGGCACTTTCTCACAC +
Preference number: 3 (lower is better)
Translates to: TAPELKPPPGAF*IFKCQQGTFSH
Trigger: GTGTGAGAAAGTGCCTTGCTGGCATTTAAATATCCAAAAGGCTCCTGGAGGTGGCTTTAGCTCAGGAGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR-3UTR CAA 90 bp CGAAGCCTCCTGCATCCCTATAACCTCAAATTCTCCCCTGAACCTAGATATTACGCCTGGAATCAAGACTaGGAGTCAATATTCACACCC +
Preference number: 3 (lower is better)
Translates to: RSLLHPYNLKFSPEPRYYAWNQD*ESIFTP
Trigger: GGGTGTGAATATTGACTCCAAGTCTTGATTCCAGGC...GTAATATCTAGGTTCAGGGGAGAATTTGAGGTTATAGGGATGCAGGAGGCTTCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR TCA 72 bp TGGATATTTAAATGCCAGCAAGGCACTTTCTCACACTaGAGACAGCAGTCTCCTTTGGTCTGGTCTGGTCTG +
Preference number: 3 (lower is better)
Translates to: WIFKCQQGTFSH*RQQSPLVWSGL
Trigger: CAGACCAGACCAGACCAAAGGAGACTGCTGTCTTCAGTGTGAGAAAGTGCCTTGCTGGCATTTAAATATCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR TCA 72 bp CCACAAAAGCCTACACTCTATTTGCAACACAGCTCCTaGGCTAAAGCCACCTCCAGGAGCCTTTTGGATATT +
Preference number: 3 (lower is better)
Translates to: PQKPTLYLQHSS*AKATSRSLLDI
Trigger: AATATCCAAAAGGCTCCTGGAGGTGGCTTTAGCTCAGGAGCTGTGTTGCAAATAGAGTGTAGGCTTTTGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR GCA 72 bp TTACCTCTACTGAGAGTGTGGTGTCAAAGAGAAGATTaGGAGAGAAGAATCCACCTCCCAGGCATAAAATGT +
Preference number: 3 (lower is better)
Translates to: LPLLRVWCQRED*ERRIHLPGIKC
Trigger: ACATTTTATGCCTGGGAGGTGGATTCTTCTCTCGCAATCTTCTCTTTGACACCACACTCTCAGTAGAGGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR TCA 72 bp AGGAAAAGGGTAGGGAGGGGTCAAGAACTGTTTGTGTaGCTTTCTAAGTGGGAAGATGTTCTTTCTATTTGG +
Preference number: 3 (lower is better)
Translates to: RKRVGRGQELFV*LSKWEDVLSIW
Trigger: CCAAATAGAAAGAACATCTTCCCACTTAGAAAGTCACACAAACAGTTCTTGACCCCTCCCTACCCTTTTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CCA 72 bp AGAAGTATTCAAATAAAGGTGTGTGGTGTTATAGCATaGGGTTTCTGTGGCAATGAGTGTCATGACGGATGG +
Preference number: 3 (lower is better)
Translates to: RSIQIKVCGVIA*GFCGNECHDGW
Trigger: CCATCCGTCATGACACTCATTGCCACAGAAACCCCATGCTATAACACCACACACCTTTATTTGAATACTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CCA 90 bp GTGACCCCAAGTACCGTGCCGTCTCCGAGCAAGGGGTCTGCACCCTGGAGATCCTCCAGCAGCCGGCTATaGCCACTGCTGCCCGCCGCT +
Preference number: 4 (lower is better)
Translates to: VTPSTVPSPSKGSAPWRSSSSRL*PLLPAA
Trigger: AGCGGCGGGCAGCAGTGGCCATAGCCGGCTGCTGGA...GGATCTCCAGGGTGCAGACCCCTTGCTCGGAGACGGCACGGTACTTGGGGTCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CCA 90 bp GGGCAGCCAGCTCCTTACAGAAGGGGCCCTGTTCCATGGCATCTCTTCAGAGCCTCCAGCAGCCGGCTATaGCCACTGCTGCCCGCCGCT +
Preference number: 4 (lower is better)
Translates to: GQPAPYRRGPVPWHLFRASSSRL*PLLPAA
Trigger: AGCGGCGGGCAGCAGTGGCCATAGCCGGCTGCTGGA...GGCTCTGAAGAGATGCCATGGAACAGGGCCCCTTCTGTAAGGAGCTGGCTGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CCA 90 bp TGGATTGTCGGCTGGAGGTTAAAGGTGGGAGTCGGAAGGGTGCCCTCAGCACCCTCCAGCAGCCGGCTATaGCCACTGCTGCCCGCCGCT +
Preference number: 4 (lower is better)
Translates to: WIVGWRLKVGVGRVPSAPSSSRL*PLLPAA
Trigger: AGCGGCGGGCAGCAGTGGCCATAGCCGGCTGCTGGA...GGGTGCTGAGGGCACCCTTCCGACTCCCACCTTTAACCTCCAGCCGACAATCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp TTCTGCAGCGTCCGAGCATCACCTAAGGTCAGGGGCCCTGGGCTGGTGGAGTGGACTGCTGCCCGCCGCTaGGTCACCACTGTCTTGTAC +
Preference number: 4 (lower is better)
Translates to: FCSVRASPKVRGPGLVEWTAARR*VTTVLY
Trigger: GTACAAGACAGTGGTGACTCAGCGGCGGGCAGCAGT...CCACTCCACCAGCCCAGGGCCCCTGACCTTAGGTGATGCTCGGACGCTGCAGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp TACCTGCAGGCCCCCTCCATCAGACGCTGGGTCCAGACCCAGGATCAGGCCTGGGCGACTTGGCGATCTTaGGCTCCTTCCCGTAGTACT +
Preference number: 4 (lower is better)
Translates to: YLQAPSIRRWVQTQDQAWATWRS*APSRST
Trigger: AGTACTACGGGAAGGAGCTCAAGATCGCCAAGTCGC...CCAGGCCTGATCCTGGGTCTGGACCCAGCGTCTGATGGAGGGGGCCTGCAGGTA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp TGGATTGTCGGCTGGAGGTTAAAGGTGGGAGTCGGAAGGGTGCCCTCAGCACCCACTGCTGCCCGCCGCTaGGTCACCACTGTCTTGTAC +
Preference number: 4 (lower is better)
Translates to: WIVGWRLKVGVGRVPSAPTAARR*VTTVLY
Trigger: GTACAAGACAGTGGTGACTCAGCGGCGGGCAGCAGT...GGGTGCTGAGGGCACCCTTCCGACTCCCACCTTTAACCTCCAGCCGACAATCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CCA 90 bp GTGACCCCAAGTACCGTGCCGTCTCCGAGCAAGGGGTCTGCACCCTGGAGATCCGCATCGCGAAGTGCCTaGTTCACCTTCACAGCCCAA +
Preference number: 4 (lower is better)
Translates to: VTPSTVPSPSKGSAPWRSASRSA*FTFTAQ
Trigger: TTGGGCTGTGAAGGTGAACCAGGCACTTCGCGATGC...GGATCTCCAGGGTGCAGACCCCTTGCTCGGAGACGGCACGGTACTTGGGGTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CCA 90 bp GTGACCCCAAGTACCGTGCCGTCTCCGAGCAAGGGGTCTGCACCCTGGAGATCCGGAAGGCATAGACGATaGGGTTCATGGCCGAGTTGC +
Preference number: 4 (lower is better)
Translates to: VTPSTVPSPSKGSAPWRSGRHRR*GSWPSC
Trigger: GCAACTCGGCCATGAACCCCATCGTCTATGCCTTCC...GGATCTCCAGGGTGCAGACCCCTTGCTCGGAGACGGCACGGTACTTGGGGTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp CTCGGGGTCAGGAGAGCACCCGCGTGGCCAAGAACACAATCCTTGGAGGAGGGGCAGAGACCAAGGCAATaGGCACCTCGATGCCAATGT +
Preference number: 4 (lower is better)
Translates to: LGVRRAPAWPRTQSLEEGQRPRQ*APRCQC
Trigger: ACATTGGCATCGAGGTGCTCATTGCCTTGGTCTCTG...CCCCTCCTCCAAGGATTGTGTTCTTGGCCACGCGGGTGCTCTCCTGACCCCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp GTGACCCCAAGTACCGTGCCGTCTCCGAGCAAGGGGTCTGCACCCTGGAGATCCCAGAGACCAAGGCAATaGGCACCTCGATGCCAATGT +
Preference number: 4 (lower is better)
Translates to: VTPSTVPSPSKGSAPWRSQRPRQ*APRCQC
Trigger: ACATTGGCATCGAGGTGCTCATTGCCTTGGTCTCTG...GGATCTCCAGGGTGCAGACCCCTTGCTCGGAGACGGCACGGTACTTGGGGTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp TTCTCGGGGTCAGGAGAGCACCCGCGTGGCCAAGAACACAATCCTTGGAGGAGGACCGGAGAGGGATCTTaGCTCGGAGGTACCGATCCA +
Preference number: 4 (lower is better)
Translates to: FSGSGEHPRGQEHNPWRRTGEGS*LGGTDP
Trigger: TGGATCGGTACCTCCGAGTCAAGATCCCTCTCCGGT...CCTCCTCCAAGGATTGTGTTCTTGGCCACGCGGGTGCTCTCCTGACCCCGAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp TTCTCCTGGGGCTTGGAAGCAGAGATGGTGTCCCTCAGGAGAGTCCAGGCCTGCACCGGAGAGGGATCTTaGCTCGGAGGTACCGATCCA +
Preference number: 4 (lower is better)
Translates to: FSWGLEAEMVSLRRVQACTGEGS*LGGTDP
Trigger: TGGATCGGTACCTCCGAGTCAAGATCCCTCTCCGGT...GCAGGCCTGGACTCTCCTGAGGGACACCATCTCTGCTTCCAAGCCCCAGGAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp CTCTCACCTGAGGGCACCCAATTCCCTGCTATGGCCTGCCCCAACTCCAAACCTACTGCTGCCCGCCGCTaGGTCACCACTGTCTTGTAC +
Preference number: 4 (lower is better)
Translates to: LSPEGTQFPAMACPNSKPTAARR*VTTVLY
Trigger: GTACAAGACAGTGGTGACTCAGCGGCGGGCAGCAGT...AGGTTTGGAGTTGGGGCAGGCCATAGCAGGGAATTGGGTGCCCTCAGGTGAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp GTGACCCCAAGTACCGTGCCGTCTCCGAGCAAGGGGTCTGCACCCTGGAGATCCGTCACCAGAGGAGGCTaGCACCTTTTTGTTGAGCTG +
Preference number: 4 (lower is better)
Translates to: VTPSTVPSPSKGSAPWRSVTRGG*HLFVEL
Trigger: CAGCTCAACAAAAAGGTGTCAGCCTCCTCTGGTGAC...GGATCTCCAGGGTGCAGACCCCTTGCTCGGAGACGGCACGGTACTTGGGGTCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp GGTGGTAAGCTTGGTGACAAGCACCCTCACCCGCTGAGCCACCTCACTCACCCTCAAAGAGGAAGAGGATaGGGGCCAGCGACTTGGCGA +
Preference number: 4 (lower is better)
Translates to: GGKLGDKHPHPLSHLTHPQRGRG*GPATWR
Trigger: TCGCCAAGTCGCTGGCCCTCATCCTCTTCCTCTTTG...AGGGTGAGTGAGGTGGCTCAGCGGGTGAGGGTGCTTGTCACCAAGCTTACCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CAA 72 bp GTCAGGAGAGCACCCGCGTGGCCAAGAACACAATCCTaGGAGGAGGGGCCGAGGTCTCCTTCCCTGTGTTTT +
Preference number: 4 (lower is better)
Translates to: VRRAPAWPRTQS*EEGPRSPSLCF
Trigger: AAAACACAGGGAAGGAGACCTCGGCCCCTCCTCCAAGGATTGTGTTCTTGGCCACGCGGGTGCTCTCCTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp CCCAATTCCCTGCTATGGCCTGCCCCAACTCCAAACCTCCTCCAGGTCCCCAAGTCTCGAACTCACACTTaGTCACGGGCTCCCCAACAC +
Preference number: 4 (lower is better)
Translates to: PNSLLWPAPTPNLLQVPKSRTHT*SRAPQH
Trigger: GTGTTGGGGAGCCCGTGATCAAGTGTGAGTTCGAGA...CTTGGGGACCTGGAGGAGGTTTGGAGTTGGGGCAGGCCATAGCAGGGAATTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp TACCTGCAGGCCCCCTCCATCAGACGCTGGGTCCAGACCCAGGATCAGGCCTGGCCCAGACGAAGAAGTTaGAGTAGACCATGTACTCCA +
Preference number: 4 (lower is better)
Translates to: YLQAPSIRRWVQTQDQAWPRRRS*SRPCTP
Trigger: TGGAGTACATGGTCTACTTCAACTTCTTCGTCTGGG...CCAGGCCTGATCCTGGGTCTGGACCCAGCGTCTGATGGAGGGGGCCTGCAGGTA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp CTCTCACCTGAGGGCACCCAATTCCCTGCTATGGCCTGCCCCAACTCCAAACCTGTAGCGGTAGCCAGCTaGGGGCAAAGAGGAAGAGGA +
Preference number: 4 (lower is better)
Translates to: LSPEGTQFPAMACPNSKPVAVAS*GQRGRG
Trigger: TCCTCTTCCTCTTTGCCCTCAGCTGGCTACCGCTAC...AGGTTTGGAGTTGGGGCAGGCCATAGCAGGGAATTGGGTGCCCTCAGGTGAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp GTGACCCCAAGTACCGTGCCGTCTCCGAGCAAGGGGTCTGCACCCTGGAGATCCTGGGGCAGAAGAGGGTaGTGCAGTTCAAGATGTGTA +
Preference number: 4 (lower is better)
Translates to: VTPSTVPSPSKGSAPWRSWGRRG*CSSRCV
Trigger: TACACATCTTGAACTGCATCACCCTCTTCTGCCCCA...GGATCTCCAGGGTGCAGACCCCTTGCTCGGAGACGGCACGGTACTTGGGGTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp CTCGGGGTCAGGAGAGCACCCGCGTGGCCAAGAACACAATCCTTGGAGGAGGGGAGATGGCAATGTAGATaGGGATGCTGGGTTTCTGGC +
Preference number: 4 (lower is better)
Translates to: LGVRRAPAWPRTQSLEEGRWQCR*GCWVSG
Trigger: GCCAGAAACCCAGCATCCTCATCTACATTGCCATCT...CCCCTCCTCCAAGGATTGTGTTCTTGGCCACGCGGGTGCTCTCCTGACCCCGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CCA 90 bp GACAGTGTAGCACTGGGTCATGCTGGGGAGGTCCAGAAGGGATGGGTACTCTGGGCCAGGATGGAGCTCTaGGTGAGGATGAGGACAGGA +
Preference number: 4 (lower is better)
Translates to: DSVALGHAGEVQKGWVLWARMEL*VRMRTG
Trigger: TCCTGTCCTCATCCTCACCCAGAGCTCCATCCTGGC...CCAGAGTACCCATCCCTTCTGGACCTCCCCAGCATGACCCAGTGCTACACTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp CCCCTGGCTGACCATACCTCCACTCCTGGCTATAGCACGCAGCTTTTCTGCAGCTCTCGAACTCACACTTaGTCACGGGCTCCCCAACAC +
Preference number: 4 (lower is better)
Translates to: PLADHTSTPGYSTQLFCSSRTHT*SRAPQH
Trigger: GTGTTGGGGAGCCCGTGATCAAGTGTGAGTTCGAGA...GCTGCAGAAAAGCTGCGTGCTATAGCCAGGAGTGGAGGTATGGTCAGCCAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp TCTTGCCGCAATCCTCCGTGGCTCAGGTTTTCCTGCCCACTCCTCTCTGTTCACGTAGCGGTAGCCAGCTaGGGGCAAAGAGGAAGAGGA +
Preference number: 4 (lower is better)
Translates to: SCRNPPWLRFSCPLLSVHVAVAS*GQRGRG
Trigger: TCCTCTTCCTCTTTGCCCTCAGCTGGCTACCGCTAC...GTGAACAGAGAGGAGTGGGCAGGAAAACCTGAGCCACGGAGGATTGCGGCAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CCA 90 bp AAGCTTGGTGACAAGCACCCTCACCCGCTGAGCCACCTCACTCACCCTAGAAGCGCATCGCGAAGTGCCTaGTTCACCTTCACAGCCCAA +
Preference number: 4 (lower is better)
Translates to: KLGDKHPHPLSHLTHPRSASRSA*FTFTAQ
Trigger: TTGGGCTGTGAAGGTGAACCAGGCACTTCGCGATGC...GCTTCTAGGGTGAGTGAGGTGGCTCAGCGGGTGAGGGTGCTTGTCACCAAGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CCA 90 bp CATTACATCTTCTCCGCTGAGGTGGTTTGGTTGCCCTCTGGCAGTGCTGGGGTGGCCAGGATGGAGCTCTaGGTGAGGATGAGGACAGGA +
Preference number: 4 (lower is better)
Translates to: HYIFSAEVVWLPSGSAGVARMEL*VRMRTG
Trigger: TCCTGTCCTCATCCTCACCCAGAGCTCCATCCTGGC...CACCCCAGCACTGCCAGAGGGCAACCAAACCACCTCAGCGGAGAAGATGTAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CCA 90 bp GACAGTGTAGCACTGGGTCATGCTGGGGAGGTCCAGAAGGGATGGGTACTCTGGGGAAGGCATAGACGATaGGGTTCATGGCCGAGTTGC +
Preference number: 4 (lower is better)
Translates to: DSVALGHAGEVQKGWVLWGRHRR*GSWPSC
Trigger: GCAACTCGGCCATGAACCCCATCGTCTATGCCTTCC...CCAGAGTACCCATCCCTTCTGGACCTCCCCAGCATGACCCAGTGCTACACTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CAA 72 bp GGGTTGTACTTCCTGGGGAAGCTCTTCTCCTGGGGCTaGGAAGCAGAGATGGTGTCCCTCAGGAGAGTCCAG +
Preference number: 4 (lower is better)
Translates to: GLYFLGKLFSWG*EAEMVSLRRVQ
Trigger: CTGGACTCTCCTGAGGGACACCATCTCTGCTTCCAAGCCCCAGGAGAAGAGCTTCCCCAGGAAGTACAACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp AGCGAAGCGGCGGCATATCCATTTCTCTCTATTCATCCACCTCTAAGGGACTGTGGATGGCCAGTGGGATaGCCAGGGCGCCAACAGCCA +
Preference number: 4 (lower is better)
Translates to: SEAAAYPFLSIHPPLRDCGWPVG*PGRQQP
Trigger: TGGCTGTTGGCGCCCTGGTCATCCCACTGGCCATCC...ACAGTCCCTTAGAGGTGGATGAATAGAGAGAAATGGATATGCCGCCGCTTCGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp GGGCAGCCAGCTCCTTACAGAAGGGGCCCTGTTCCATGGCATCTCTTCAGAGCCCTGACACCTTTTTGTTaGGCTGCTTGCGGATCAGGT +
Preference number: 4 (lower is better)
Translates to: GQPAPYRRGPVPWHLFRALTPFC*AACGSG
Trigger: ACCTGATCCGCAAGCAGCTCAACAAAAAGGTGTCAG...GGCTCTGAAGAGATGCCATGGAACAGGGCCCCTTCTGTAAGGAGCTGGCTGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp ACATCTTCTCCGCTGAGGTGGTTTGGTTGCCCTCTGGCAGTGCTGGGGTGCCAGAGATGGCAATGTAGATaGGGATGCTGGGTTTCTGGC +
Preference number: 4 (lower is better)
Translates to: TSSPLRWFGCPLAVLGCQRWQCR*GCWVSG
Trigger: GCCAGAAACCCAGCATCCTCATCTACATTGCCATCT...CTGGCACCCCAGCACTGCCAGAGGGCAACCAAACCACCTCAGCGGAGAAGATGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp GGGGAAGCTCTTCTCCTGGGGCTTGGAAGCAGAGATGGTGTCCCTCAGGAGAGTCCGAGTTGCCGTGTGTaGGGAAGATGGCAATGTAGA +
Preference number: 4 (lower is better)
Translates to: GEALLLGLGSRDGVPQESPSCRV*GRWQCR
Trigger: TCTACATTGCCATCTTCCTCACACACGGCAACTCGG...ACTCTCCTGAGGGACACCATCTCTGCTTCCAAGCCCCAGGAGAAGAGCTTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CCA 90 bp TTCTGCAGCGTCCGAGCATCACCTAAGGTCAGGGGCCCTGGGCTGGTGGAGTGGATCAGCTTTCTCCTCTaGGATATCTTCCTCAATGGG +
Preference number: 4 (lower is better)
Translates to: FCSVRASPKVRGPGLVEWISFLL*DIFLNG
Trigger: CCCATTGAGGAAGATATCCCAGAGGAGAAAGCTGAT...CCACTCCACCAGCCCAGGGCCCCTGACCTTAGGTGATGCTCGGACGCTGCAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp AAGCTTGGTGACAAGCACCCTCACCCGCTGAGCCACCTCACTCACCCTAGAAGCCTGACACCTTTTTGTTaGGCTGCTTGCGGATCAGGT +
Preference number: 4 (lower is better)
Translates to: KLGDKHPHPLSHLTHPRSLTPFC*AACGSG
Trigger: ACCTGATCCGCAAGCAGCTCAACAAAAAGGTGTCAG...GCTTCTAGGGTGAGTGAGGTGGCTCAGCGGGTGAGGGTGCTTGTCACCAAGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp ATCCAGGCTCAGCAGAACATGGATTGGTCCCACCTGAGACCTCCACAAAAGCCTCAAAGAGGAAGAGGATaGGGGCCAGCGACTTGGCGA +
Preference number: 4 (lower is better)
Translates to: IQAQQNMDWSHLRPPQKPQRGRG*GPATWR
Trigger: TCGCCAAGTCGCTGGCCCTCATCCTCTTCCTCTTTG...AGGCTTTTGTGGAGGTCTCAGGTGGGACCAATCCATGTTCTGCTGAGCCTGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
CDS-3UTR TCA 90 bp CTCTCACCTGAGGGCACCCAATTCCCTGCTATGGCCTGCCCCAACTCCAAACCTTGGGGCAGAAGAGGGTaGTGCAGTTCAAGATGTGTA +
Preference number: 4 (lower is better)
Translates to: LSPEGTQFPAMACPNSKPWGRRG*CSSRCV
Trigger: TACACATCTTGAACTGCATCACCCTCTTCTGCCCCA...AGGTTTGGAGTTGGGGCAGGCCATAGCAGGGAATTGGGTGCCCTCAGGTGAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CCA 90 bp ATCCAGGCTCAGCAGAACATGGATTGGTCCCACCTGAGACCTCCACAAAAGCCTGATAAGGATGGCCAGTaGGATGACCAGGGCGCCAAC +
Preference number: 4 (lower is better)
Translates to: IQAQQNMDWSHLRPPQKPDKDGQ*DDQGAN
Trigger: GTTGGCGCCCTGGTCATCCCACTGGCCATCCTTATC...AGGCTTTTGTGGAGGTCTCAGGTGGGACCAATCCATGTTCTGCTGAGCCTGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
CDS-3UTR CCA 90 bp CTCTCACCTGAGGGCACCCAATTCCCTGCTATGGCCTGCCCCAACTCCAAACCTGGCTGGCATCGGAAGTaGTCGTTCCAAATCTTCAGA +
Preference number: 4 (lower is better)
Translates to: LSPEGTQFPAMACPNSKPGWHRK*SFQIFR
Trigger: TCTGAAGATTTGGAACGACCACTTCCGATGCCAGCC...AGGTTTGGAGTTGGGGCAGGCCATAGCAGGGAATTGGGTGCCCTCAGGTGAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CAA 72 bp TCAAGTCTCCAGAGCTGCACTGGGCAGAGCCCAGCTTaGGAAATTGAGCCTGAGGAAGGACTGAGAAGGGTG +
Preference number: 4 (lower is better)
Translates to: SSLQSCTGQSPA*EIEPEEGLRRV
Trigger: CACCCTTCTCAGTCCTTCCTCAGGCTCAATTTCCAAAGCTGGGCTCTGCCCAGTGCAGCTCTGGAGACTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp CATTACATCTTCTCCGCTGAGGTGGTTTGGTTGCCCTCTGGCAGTGCTGGGGTGCTGACACCTTTTTGTTaGGCTGCTTGCGGATCAGGT +
Preference number: 4 (lower is better)
Translates to: HYIFSAEVVWLPSGSAGVLTPFC*AACGSG
Trigger: ACCTGATCCGCAAGCAGCTCAACAAAAAGGTGTCAG...CACCCCAGCACTGCCAGAGGGCAACCAAACCACCTCAGCGGAGAAGATGTAATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp CATTACATCTTCTCCGCTGAGGTGGTTTGGTTGCCCTCTGGCAGTGCTGGGGTGTGGGGCAGAAGAGGGTaGTGCAGTTCAAGATGTGTA +
Preference number: 4 (lower is better)
Translates to: HYIFSAEVVWLPSGSAGVWGRRG*CSSRCV
Trigger: TACACATCTTGAACTGCATCACCCTCTTCTGCCCCA...CACCCCAGCACTGCCAGAGGGCAACCAAACCACCTCAGCGGAGAAGATGTAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CCA 90 bp ATCCAGGCTCAGCAGAACATGGATTGGTCCCACCTGAGACCTCCACAAAAGCCTGCATCGCGAAGTGCCTaGTTCACCTTCACAGCCCAA +
Preference number: 4 (lower is better)
Translates to: IQAQQNMDWSHLRPPQKPASRSA*FTFTAQ
Trigger: TTGGGCTGTGAAGGTGAACCAGGCACTTCGCGATGC...AGGCTTTTGTGGAGGTCTCAGGTGGGACCAATCCATGTTCTGCTGAGCCTGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
CDS-3UTR CCA 90 bp TTCTCGGGGTCAGGAGAGCACCCGCGTGGCCAAGAACACAATCCTTGGAGGAGGGTGGAAGTAGGTCTGTaGCCCAATGTTGATAAGGAT +
Preference number: 4 (lower is better)
Translates to: FSGSGEHPRGQEHNPWRRVEVGL*PNVDKD
Trigger: ATCCTTATCAACATTGGGCCACAGACCTACTTCCAC...CCTCCTCCAAGGATTGTGTTCTTGGCCACGCGGGTGCTCTCCTGACCCCGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CCA 90 bp GGGCAGCCAGCTCCTTACAGAAGGGGCCCTGTTCCATGGCATCTCTTCAGAGCCATCAGCTTTCTCCTCTaGGATATCTTCCTCAATGGG +
Preference number: 4 (lower is better)
Translates to: GQPAPYRRGPVPWHLFRAISFLL*DIFLNG
Trigger: CCCATTGAGGAAGATATCCCAGAGGAGAAAGCTGAT...GGCTCTGAAGAGATGCCATGGAACAGGGCCCCTTCTGTAAGGAGCTGGCTGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp GTGAGCATTTTGTGTTTAAAAAGGAAAGCCACTCAGGTCTCAGAGGCAGACAGAGGATGGCCAGTGGGATaGCCAGGGCGCCAACAGCCA +
Preference number: 4 (lower is better)
Translates to: VSILCLKRKATQVSEADRGWPVG*PGRQQP
Trigger: TGGCTGTTGGCGCCCTGGTCATCCCACTGGCCATCC...TCTGTCTGCCTCTGAGACCTGAGTGGCTTTCCTTTTTAAACACAAAATGCTCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp AGCGAAGCGGCGGCATATCCATTTCTCTCTATTCATCCACCTCTAAGGGACTGTACCGGAGAGGGATCTTaGCTCGGAGGTACCGATCCA +
Preference number: 4 (lower is better)
Translates to: SEAAAYPFLSIHPPLRDCTGEGS*LGGTDP
Trigger: TGGATCGGTACCTCCGAGTCAAGATCCCTCTCCGGT...ACAGTCCCTTAGAGGTGGATGAATAGAGAGAAATGGATATGCCGCCGCTTCGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp AGAGTTGGTGAAGCTTGGTGGCCCAGACAGAAAATTGCATTGGAGACTCCCAGGTCTCGAACTCACACTTaGTCACGGGCTCCCCAACAC +
Preference number: 4 (lower is better)
Translates to: RVGEAWWPRQKIALETPRSRTHT*SRAPQH
Trigger: GTGTTGGGGAGCCCGTGATCAAGTGTGAGTTCGAGA...CCTGGGAGTCTCCAATGCAATTTTCTGTCTGGGCCACCAAGCTTCACCAACTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CCA 90 bp AGGTTGAATGTCTCAAAGTTTTGGGTTGAGGCCAGTCTTCCGAAGCCTCCTGCAGATAAGGATGGCCAGTaGGATGACCAGGGCGCCAAC +
Preference number: 4 (lower is better)
Translates to: RLNVSKFWVEASLPKPPADKDGQ*DDQGAN
Trigger: GTTGGCGCCCTGGTCATCCCACTGGCCATCCTTATC...TGCAGGAGGCTTCGGAAGACTGGCCTCAACCCAAAACTTTGAGACATTCAACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CAA 72 bp CTAAGGGACTGTCTTCCTCACTTTGAAGTTGGTCCCTaGGGCCACCAACACCTAATAGTAGGCTCCCCTGTC +
Preference number: 4 (lower is better)
Translates to: LRDCLPHFEVGP*GHQHLIVGSPV
Trigger: GACAGGGGAGCCTACTATTAGGTGTTGGTGGCCCAAGGGACCAACTTCAAAGTGAGGAAGACAGTCCCTTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CAA 72 bp GTTGGTGAAGCTTGGTGGCCCAGACAGAAAATTGCATaGGAGACTCCCAGGAAGTTCAGGGCAAGAAGGGCT +
Preference number: 4 (lower is better)
Translates to: VGEAWWPRQKIA*ETPRKFRARRA
Trigger: AGCCCTTCTTGCCCTGAACTTCCTGGGAGTCTCCAATGCAATTTTCTGTCTGGGCCACCAAGCTTCACCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CAA 72 bp AAAGTAGGGACCCAGTCCTTGCTCTCCCTTCCTCGTTaGGTGGTTCTGAGGCTCTGGGTGAACTATCAAGTC +
Preference number: 4 (lower is better)
Translates to: KVGTQSLLSLPR*VVLRLWVNYQV
Trigger: GACTTGATAGTTCACCCAGAGCCTCAGAACCACCAAACGAGGAAGGGAGAGCAAGGACTGGGTCCCTACTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CAA 72 bp GTACTCTGGGTGGTGGTCACAGGTCAGCATCTGGGCTaGGCTCTGAGTGACTGTAAACAGCATTCTTTTCCC +
Preference number: 4 (lower is better)
Translates to: VLWVVVTGQHLG*ALSDCKQHSFP
Trigger: GGGAAAAGAATGCTGTTTACAGTCACTCAGAGCCAAGCCCAGATGCTGACCTGTGACCACCACCCAGAGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp AGCGAAGCGGCGGCATATCCATTTCTCTCTATTCATCCACCTCTAAGGGACTGTGCGACTTGGCGATCTTaGGCTCCTTCCCGTAGTACT +
Preference number: 4 (lower is better)
Translates to: SEAAAYPFLSIHPPLRDCATWRS*APSRST
Trigger: AGTACTACGGGAAGGAGCTCAAGATCGCCAAGTCGC...ACAGTCCCTTAGAGGTGGATGAATAGAGAGAAATGGATATGCCGCCGCTTCGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp AGAAGGGGCAGAGACTGGCACCCTCTTCAGAGTTGTACACTGTATGAGAAGTATCAAAGAGGAAGAGGATaGGGGCCAGCGACTTGGCGA +
Preference number: 4 (lower is better)
Translates to: RRGRDWHPLQSCTLYEKYQRGRG*GPATWR
Trigger: TCGCCAAGTCGCTGGCCCTCATCCTCTTCCTCTTTG...ATACTTCTCATACAGTGTACAACTCTGAAGAGGGTGCCAGTCTCTGCCCCTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp AGAGTTGGTGAAGCTTGGTGGCCCAGACAGAAAATTGCATTGGAGACTCCCAGGCCGAGTTGCCGTGTGTaGGGAAGATGGCAATGTAGA +
Preference number: 4 (lower is better)
Translates to: RVGEAWWPRQKIALETPRPSCRV*GRWQCR
Trigger: TCTACATTGCCATCTTCCTCACACACGGCAACTCGG...CCTGGGAGTCTCCAATGCAATTTTCTGTCTGGGCCACCAAGCTTCACCAACTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CCA 90 bp TCTACCCGACTCCCCACTATCTCTTCTAGCAGCTTGGTCACATACCAGGACGCAGGCTGGCATCGGAAGTaGTCGTTCCAAATCTTCAGA +
Preference number: 4 (lower is better)
Translates to: STRLPTISSSSLVTYQDAGWHRK*SFQIFR
Trigger: TCTGAAGATTTGGAACGACCACTTCCGATGCCAGCC...TGCGTCCTGGTATGTGACCAAGCTGCTAGAAGAGATAGTGGGGAGTCGGGTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp GTGGGAAGATGTTCTTTCTATTTGGGGACTGGGGTGCTGGAAATTCTTGACCTCGCGACTTGGCGATCTTaGGCTCCTTCCCGTAGTACT +
Preference number: 4 (lower is better)
Translates to: VGRCSFYLGTGVLEILDLATWRS*APSRST
Trigger: AGTACTACGGGAAGGAGCTCAAGATCGCCAAGTCGC...GAGGTCAAGAATTTCCAGCACCCCAGTCCCCAAATAGAAAGAACATCTTCCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp TGCCTGCTGTCCATACAAGGAAGACATCCAGGCTCAGCAGAACATGGATTGGTCAGATGGCAATGTAGATaGGGATGCTGGGTTTCTGGC +
Preference number: 4 (lower is better)
Translates to: CLLSIQGRHPGSAEHGLVRWQCR*GCWVSG
Trigger: GCCAGAAACCCAGCATCCTCATCTACATTGCCATCT...GACCAATCCATGTTCTGCTGAGCCTGGATGTCTTCCTTGTATGGACAGCAGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR CAA 72 bp TTCTTTTCCCTCATTAGGAAAGTAGGGACCCAGTCCTaGCTCTCCCTTCCTCGTTTGGTGGTTCTGAGGCTC +
Preference number: 4 (lower is better)
Translates to: FFSLIRKVGTQS*LSLPRLVVLRL
Trigger: GAGCCTCAGAACCACCAAACGAGGAAGGGAGAGCAAGGACTGGGTCCCTACTTTCCTAATGAGGGAAAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CAA 72 bp GTTCTTTCTATTTGGGGACTGGGGTGCTGGAAATTCTaGACCTCAAACCTCTCCGTTCCCTCCTGTCTTCCC +
Preference number: 4 (lower is better)
Translates to: VLSIWGLGCWKF*TSNLSVPSCLP
Trigger: GGGAAGACAGGAGGGAACGGAGAGGTTTGAGGTCAAGAATTTCCAGCACCCCAGTCCCCAAATAGAAAGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CAA 72 bp TCAGCACCCTGCTGTAGTGGACAGACTGAGTCCCTCTaGGGAGCTGGACTAGATGTAGTTCAGAGTGAAACT +
Preference number: 4 (lower is better)
Translates to: SAPCCSGQTESL*GAGLDVVQSET
Trigger: AGTTTCACTCTGAACTACATCTAGTCCAGCTCCCAAGAGGGACTCAGTCTGTCCACTACAGCAGGGTGCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp AGAGTTGGTGAAGCTTGGTGGCCCAGACAGAAAATTGCATTGGAGACTCCCAGGCCCAGACGAAGAAGTTaGAGTAGACCATGTACTCCA +
Preference number: 4 (lower is better)
Translates to: RVGEAWWPRQKIALETPRPRRRS*SRPCTP
Trigger: TGGAGTACATGGTCTACTTCAACTTCTTCGTCTGGG...CCTGGGAGTCTCCAATGCAATTTTCTGTCTGGGCCACCAAGCTTCACCAACTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp AAAGCAGTAGGCAGATCTGGGTACCATTTTTGTAGCAAAAGACAGAGAGCATGCGTAGCGGTAGCCAGCTaGGGGCAAAGAGGAAGAGGA +
Preference number: 4 (lower is better)
Translates to: KAVGRSGYHFCSKRQRACVAVAS*GQRGRG
Trigger: TCCTCTTCCTCTTTGCCCTCAGCTGGCTACCGCTAC...GCATGCTCTCTGTCTTTTGCTACAAAAATGGTACCCAGATCTGCCTACTGCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CCA 90 bp AAGCCACCTCCAGGAGCCTTTTGGATATTTAAATGCCAGCAAGGCACTTTCTCAGGAAGGCATAGACGATaGGGTTCATGGCCGAGTTGC +
Preference number: 4 (lower is better)
Translates to: KPPPGAFWIFKCQQGTFSGRHRR*GSWPSC
Trigger: GCAACTCGGCCATGAACCCCATCGTCTATGCCTTCC...TGAGAAAGTGCCTTGCTGGCATTTAAATATCCAAAAGGCTCCTGGAGGTGGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
CDS-3UTR CCA 90 bp AGGTTGAATGTCTCAAAGTTTTGGGTTGAGGCCAGTCTTCCGAAGCCTCCTGCAGGCTGGCATCGGAAGTaGTCGTTCCAAATCTTCAGA +
Preference number: 4 (lower is better)
Translates to: RLNVSKFWVEASLPKPPAGWHRK*SFQIFR
Trigger: TCTGAAGATTTGGAACGACCACTTCCGATGCCAGCC...TGCAGGAGGCTTCGGAAGACTGGCCTCAACCCAAAACTTTGAGACATTCAACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CAA 72 bp GAATCAAGACTTGGAGTCAATATTCACACCCAAGGGTaGTACTTCCTGGGGAAGCTCTTCTCCTGGGGCTTG +
Preference number: 4 (lower is better)
Translates to: ESRLGVNIHTQG*YFLGKLFSWGL
Trigger: CAAGCCCCAGGAGAAGAGCTTCCCCAGGAAGTACAACCCTTGGGTGTGAATATTGACTCCAAGTCTTGATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp GAGACAATCCCTGGACCCATTCTTTCTGTGTCTCCCAAGTATAACCCTGGGCTTCCCAGACGAAGAAGTTaGAGTAGACCATGTACTCCA +
Preference number: 4 (lower is better)
Translates to: ETIPGPILSVSPKYNPGLPRRRS*SRPCTP
Trigger: TGGAGTACATGGTCTACTTCAACTTCTTCGTCTGGG...AAGCCCAGGGTTATACTTGGGAGACACAGAAAGAATGGGTCCAGGGATTGTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CCA 90 bp AGAGTTGGTGAAGCTTGGTGGCCCAGACAGAAAATTGCATTGGAGACTCCCAGGATCAGCTTTCTCCTCTaGGATATCTTCCTCAATGGG +
Preference number: 4 (lower is better)
Translates to: RVGEAWWPRQKIALETPRISFLL*DIFLNG
Trigger: CCCATTGAGGAAGATATCCCAGAGGAGAAAGCTGAT...CCTGGGAGTCTCCAATGCAATTTTCTGTCTGGGCCACCAAGCTTCACCAACTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CAA 72 bp GGGCTTCACAATCTTTTATTAGACATAGGGTCCTCCTaGAGAGCCAGGGACACCTTACCTCCAACTGAAGGA +
Preference number: 4 (lower is better)
Translates to: GLHNLLLDIGSS*RARDTLPPTEG
Trigger: TCCTTCAGTTGGAGGTAAGGTGTCCCTGGCTCTCAAGGAGGACCCTATGTCTAATAAAAGATTGTGAAGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp TACCTCCAACTGAAGGAAGAGCCTGGAATCAAGACTTGGAGTCAATATTCACACCAGAGACCAAGGCAATaGGCACCTCGATGCCAATGT +
Preference number: 4 (lower is better)
Translates to: YLQLKEEPGIKTWSQYSHQRPRQ*APRCQC
Trigger: ACATTGGCATCGAGGTGCTCATTGCCTTGGTCTCTG...GTGTGAATATTGACTCCAAGTCTTGATTCCAGGCTCTTCCTTCAGTTGGAGGTA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp AAAGCAGTAGGCAGATCTGGGTACCATTTTTGTAGCAAAAGACAGAGAGCATGCGTCACCAGAGGAGGCTaGCACCTTTTTGTTGAGCTG +
Preference number: 4 (lower is better)
Translates to: KAVGRSGYHFCSKRQRACVTRGG*HLFVEL
Trigger: CAGCTCAACAAAAAGGTGTCAGCCTCCTCTGGTGAC...GCATGCTCTCTGTCTTTTGCTACAAAAATGGTACCCAGATCTGCCTACTGCTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp GTGAGCATTTTGTGTTTAAAAAGGAAAGCCACTCAGGTCTCAGAGGCAGACAGACCGAGTTGCCGTGTGTaGGGAAGATGGCAATGTAGA +
Preference number: 4 (lower is better)
Translates to: VSILCLKRKATQVSEADRPSCRV*GRWQCR
Trigger: TCTACATTGCCATCTTCCTCACACACGGCAACTCGG...TCTGTCTGCCTCTGAGACCTGAGTGGCTTTCCTTTTTAAACACAAAATGCTCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CCA 90 bp GAGACAATCCCTGGACCCATTCTTTCTGTGTCTCCCAAGTATAACCCTGGGCTTGTGGAAGTAGGTCTGTaGCCCAATGTTGATAAGGAT +
Preference number: 4 (lower is better)
Translates to: ETIPGPILSVSPKYNPGLVEVGL*PNVDKD
Trigger: ATCCTTATCAACATTGGGCCACAGACCTACTTCCAC...AAGCCCAGGGTTATACTTGGGAGACACAGAAAGAATGGGTCCAGGGATTGTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR TCA 90 bp TTTGGATATTTAAATGCCAGCAAGGCACTTTCTCACACTGAAGACAGCAGTCTCGTCACCAGAGGAGGCTaGCACCTTTTTGTTGAGCTG +
Preference number: 4 (lower is better)
Translates to: FGYLNASKALSHTEDSSLVTRGG*HLFVEL
Trigger: CAGCTCAACAAAAAGGTGTCAGCCTCCTCTGGTGAC...GAGACTGCTGTCTTCAGTGTGAGAAAGTGCCTTGCTGGCATTTAAATATCCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
3UTR CAA 72 bp GTTACCTCTACTGAGAGTGTGGTGTCAAAGAGAAGATaGCGAGAGAAGAATCCACCTCCCAGGCATAAAATG +
Preference number: 4 (lower is better)
Translates to: VTSTESVVSKRR*REKNPPPRHKM
Trigger: CATTTTATGCCTGGGAGGTGGATTCTTCTCTCGCAATCTTCTCTTTGACACCACACTCTCAGTAGAGGTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CCA 90 bp GTGAGCATTTTGTGTTTAAAAAGGAAAGCCACTCAGGTCTCAGAGGCAGACAGAGTGGAAGTAGGTCTGTaGCCCAATGTTGATAAGGAT +
Preference number: 4 (lower is better)
Translates to: VSILCLKRKATQVSEADRVEVGL*PNVDKD
Trigger: ATCCTTATCAACATTGGGCCACAGACCTACTTCCAC...TCTGTCTGCCTCTGAGACCTGAGTGGCTTTCCTTTTTAAACACAAAATGCTCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
3UTR CAA 72 bp TTTAACATCAGCCAGAGTGTCACAGCCGTGAGCATTTaGTGTTTAAAAAGGAAAGCCACTCAGGTCTCAGAG +
Preference number: 4 (lower is better)
Translates to: FNISQSVTAVSI*CLKRKATQVSE
Trigger: CTCTGAGACCTGAGTGGCTTTCCTTTTTAAACACAAAATGCTCACGGCTGTGACACTCTGGCTGATGTTAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS GCA 90 bp CAGGCCTACCACAAGGGAGAGAATCCAGCAGCCGGCTATGGCCACTaGTGCCCGCCGCTGAGTCACCACTGTCTTGTACCGGAGAGGGAT +
Preference number: 5 (lower is better)
Translates to: QAYHKGENPAAGYGH*CPPLSHHCLVPERD
Trigger: ATCCCTCTCCGGTACAAGACAGTGGTGACTCAGCGGCGGGCAGCAGTGGCCATAGCCGGCTGCTGGATTCTCTCCCTTGTGGTAGGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
ENSMUST00000187631.2
CDS-3UTR CAA 90 bp CTCGGGGTCAGGAGAGCACCCGCGTGGCCAAGAACACAATCCTTGGAGGAGGGGTACCGGAGAGGGATCTaGACTCGGAGGTACCGATCC +
Preference number: 5 (lower is better)
Translates to: LGVRRAPAWPRTQSLEEGYRRGI*TRRYRS
Trigger: GGATCGGTACCTCCGAGTCAAGATCCCTCTCCGGTA...CCCCTCCTCCAAGGATTGTGTTCTTGGCCACGCGGGTGCTCTCCTGACCCCGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS GCA 90 bp GCCTACCACAAGGGAGAGAATCCAGCAGCCGGCTATGGCCACTGCTaGCCGCCGCTGAGTCACCACTGTCTTGTACCGGAGAGGGATCTT +
Preference number: 5 (lower is better)
Translates to: AYHKGENPAAGYGHC*PPLSHHCLVPERDL
Trigger: AAGATCCCTCTCCGGTACAAGACAGTGGTGACTCAGCGGCGGGCAGCAGTGGCCATAGCCGGCTGCTGGATTCTCTCCCTTGTGGTAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
ENSMUST00000187631.2
CDS CCA 90 bp GAGGACAGGACAGGCCACCATGAGGCAGGTGTGGAAGTAGGTCTGTaGCCCAATGTTGATAAGGATGGCCAGTGGGATGACCAGGGCGCC +
Preference number: 5 (lower is better)
Translates to: EDRTGHHEAGVEVGL*PNVDKDGQWDDQGA
Trigger: GGCGCCCTGGTCATCCCACTGGCCATCCTTATCAACATTGGGCCACAGACCTACTTCCACACCTGCCTCATGGTGGCCTGTCCTGTCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
ENSMUST00000187631.2
CDS-3UTR CAA 90 bp CCCAATTCCCTGCTATGGCCTGCCCCAACTCCAAACCTCCTCCAGGTCCCCAAGTACCGGAGAGGGATCTaGACTCGGAGGTACCGATCC +
Preference number: 5 (lower is better)
Translates to: PNSLLWPAPTPNLLQVPKYRRGI*TRRYRS
Trigger: GGATCGGTACCTCCGAGTCAAGATCCCTCTCCGGTA...CTTGGGGACCTGGAGGAGGTTTGGAGTTGGGGCAGGCCATAGCAGGGAATTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CAA 90 bp GTGACCCCAAGTACCGTGCCGTCTCCGAGCAAGGGGTCTGCACCCTGGAGATCCTCCACCTCACTCAGGTaGTTCCAGCCAAACATGGGT +
Preference number: 5 (lower is better)
Translates to: VTPSTVPSPSKGSAPWRSSTSLR*FQPNMG
Trigger: ACCCATGTTTGGCTGGAACAACCTGAGTGAGGTGGA...GGATCTCCAGGGTGCAGACCCCTTGCTCGGAGACGGCACGGTACTTGGGGTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CAA 90 bp TTCTCCTGGGGCTTGGAAGCAGAGATGGTGTCCCTCAGGAGAGTCCAGGCCTGCGGGTTCATGGCCGAGTaGCCGTGTGTGAGGAAGATG +
Preference number: 5 (lower is better)
Translates to: FSWGLEAEMVSLRRVQACGFMAE*PCVRKM
Trigger: CATCTTCCTCACACACGGCAACTCGGCCATGAACCC...GCAGGCCTGGACTCTCCTGAGGGACACCATCTCTGCTTCCAAGCCCCAGGAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CAA 90 bp CACCTGAGGGCACCCAATTCCCTGCTATGGCCTGCCCCAACTCCAAACCTCCTCGGGTTCATGGCCGAGTaGCCGTGTGTGAGGAAGATG +
Preference number: 5 (lower is better)
Translates to: HLRAPNSLLWPAPTPNLLGFMAE*PCVRKM
Trigger: CATCTTCCTCACACACGGCAACTCGGCCATGAACCC...GAGGAGGTTTGGAGTTGGGGCAGGCCATAGCAGGGAATTGGGTGCCCTCAGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS CCA 90 bp GGTGTGGAAGTAGGTCTGTGGCCCAATGTTGATAAGGATGGCCAGTaGGATGACCAGGGCGCCAACAGCCACATCAGCTACCGCCAGGGA +
Preference number: 5 (lower is better)
Translates to: GVEVGLWPNVDKDGQ*DDQGANSHISYRQG
Trigger: TCCCTGGCGGTAGCTGATGTGGCTGTTGGCGCCCTGGTCATCCCACTGGCCATCCTTATCAACATTGGGCCACAGACCTACTTCCACACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
ENSMUST00000187631.2
CDS-3UTR CAA 90 bp ACATCTTCTCCGCTGAGGTGGTTTGGTTGCCCTCTGGCAGTGCTGGGGTGCCAGGTCTGTGGCCCAATGTaGATAAGGATGGCCAGTGGG +
Preference number: 5 (lower is better)
Translates to: TSSPLRWFGCPLAVLGCQVCGPM*IRMASG
Trigger: CCCACTGGCCATCCTTATCAACATTGGGCCACAGAC...CTGGCACCCCAGCACTGCCAGAGGGCAACCAAACCACCTCAGCGGAGAAGATGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CAA 90 bp GGGCAGCCAGCTCCTTACAGAAGGGGCCCTGTTCCATGGCATCTCTTCAGAGCCGAGGCTGACACCTTTTaGTTGAGCTGCTTGCGGATC +
Preference number: 5 (lower is better)
Translates to: GQPAPYRRGPVPWHLFRAEADTF*LSCLRI
Trigger: GATCCGCAAGCAGCTCAACAAAAAGGTGTCAGCCTC...GGCTCTGAAGAGATGCCATGGAACAGGGCCCCTTCTGTAAGGAGCTGGCTGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CAA 90 bp TGGATTGTCGGCTGGAGGTTAAAGGTGGGAGTCGGAAGGGTGCCCTCAGCACCCGAGGCTGACACCTTTTaGTTGAGCTGCTTGCGGATC +
Preference number: 5 (lower is better)
Translates to: WIVGWRLKVGVGRVPSAPEADTF*LSCLRI
Trigger: GATCCGCAAGCAGCTCAACAAAAAGGTGTCAGCCTC...GGGTGCTGAGGGCACCCTTCCGACTCCCACCTTTAACCTCCAGCCGACAATCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CAA 90 bp CATTACATCTTCTCCGCTGAGGTGGTTTGGTTGCCCTCTGGCAGTGCTGGGGTGGTCTGTGGCCCAATGTaGATAAGGATGGCCAGTGGG +
Preference number: 5 (lower is better)
Translates to: HYIFSAEVVWLPSGSAGVVCGPM*IRMASG
Trigger: CCCACTGGCCATCCTTATCAACATTGGGCCACAGAC...CACCCCAGCACTGCCAGAGGGCAACCAAACCACCTCAGCGGAGAAGATGTAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CAA 90 bp AGTGTAGCACTGGGTCATGCTGGGGAGGTCCAGAAGGGATGGGTACTCTGGGTGTTCTCGAACTCACACTaGATCACGGGCTCCCCAACA +
Preference number: 5 (lower is better)
Translates to: SVALGHAGEVQKGWVLWVFSNSH*ITGSPT
Trigger: TGTTGGGGAGCCCGTGATCAAGTGTGAGTTCGAGAA...CACCCAGAGTACCCATCCCTTCTGGACCTCCCCAGCATGACCCAGTGCTACACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CAA 90 bp GGGGAAGCTCTTCTCCTGGGGCTTGGAAGCAGAGATGGTGTCCCTCAGGAGAGTGAGGCTGACACCTTTTaGTTGAGCTGCTTGCGGATC +
Preference number: 5 (lower is better)
Translates to: GEALLLGLGSRDGVPQESEADTF*LSCLRI
Trigger: GATCCGCAAGCAGCTCAACAAAAAGGTGTCAGCCTC...ACTCTCCTGAGGGACACCATCTCTGCTTCCAAGCCCCAGGAGAAGAGCTTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CAA 90 bp CATCCAGGCTCAGCAGAACATGGATTGGTCCCACCTGAGACCTCCACAAAAGCCATGAGGGCCAGCGACTaGGCGATCTTGAGCTCCTTC +
Preference number: 5 (lower is better)
Translates to: HPGSAEHGLVPPETSTKAMRASD*AILSSF
Trigger: GAAGGAGCTCAAGATCGCCAAGTCGCTGGCCCTCAT...GGCTTTTGTGGAGGTCTCAGGTGGGACCAATCCATGTTCTGCTGAGCCTGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
CDS TCA 90 bp CAGCCCAAATCACCAGTACATTTCCGGGCACAGAGACCAAGGCAATaGGCACCTCGATGCCAATGTAGGCAGCCTGGAAGGCCGAGATGT +
Preference number: 5 (lower is better)
Translates to: QPKSPVHFRAQRPRQ*APRCQCRQPGRPRC
Trigger: ACATCTCGGCCTTCCAGGCTGCCTACATTGGCATCGAGGTGCTCATTGCCTTGGTCTCTGTGCCCGGAAATGTACTGGTGATTTGGGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
ENSMUST00000187631.2
CDS CCA 90 bp CTATCCAGGCTTGTTCCACCTCACTCAGGTTGTTCCAGCCAAACATaGGTGTCAGGCCTACCACAAGGGAGAGAATCCAGCAGCCGGCTA +
Preference number: 5 (lower is better)
Translates to: LSRLVPPHSGCSSQT*VSGLPQGRESSSRL
Trigger: TAGCCGGCTGCTGGATTCTCTCCCTTGTGGTAGGCCTGACACCCATGTTTGGCTGGAACAACCTGAGTGAGGTGGAACAAGCCTGGATAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
ENSMUST00000187631.2
CDS-3UTR CAA 90 bp ATCCAGGCTCAGCAGAACATGGATTGGTCCCACCTGAGACCTCCACAAAAGCCTATGAGGGCCAGCGACTaGGCGATCTTGAGCTCCTTC +
Preference number: 5 (lower is better)
Translates to: IQAQQNMDWSHLRPPQKPMRASD*AILSSF
Trigger: GAAGGAGCTCAAGATCGCCAAGTCGCTGGCCCTCAT...AGGCTTTTGTGGAGGTCTCAGGTGGGACCAATCCATGTTCTGCTGAGCCTGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
CDS-3UTR CAA 90 bp GGTGGTTCTCTACCCGACTCCCCACTATCTCTTCTAGCAGCTTGGTCACATACCGGGTTCATGGCCGAGTaGCCGTGTGTGAGGAAGATG +
Preference number: 5 (lower is better)
Translates to: GGSLPDSPLSLLAAWSHTGFMAE*PCVRKM
Trigger: CATCTTCCTCACACACGGCAACTCGGCCATGAACCC...GGTATGTGACCAAGCTGCTAGAAGAGATAGTGGGGAGTCGGGTAGAGAACCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS TCA 90 bp CTTGAGCTCCTTCCCGTAGTACTTCTGGGGGTCACCAGAGGAGGCTaGCACCTTTTTGTTGAGCTGCTTGCGGATCAGGTAGAAGACCTC +
Preference number: 5 (lower is better)
Translates to: LELLPVVLLGVTRGG*HLFVELLADQVEDL
Trigger: GAGGTCTTCTACCTGATCCGCAAGCAGCTCAACAAAAAGGTGTCAGCCTCCTCTGGTGACCCCCAGAAGTACTACGGGAAGGAGCTCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS GCA 90 bp AGCTACCGCCAGGGATACGATGAAGCAGAAGGTAGCATCGCGAAGTaGCTGGTTCACCTTCACAGCCCAAATCACCAGTACATTTCCGGG +
Preference number: 5 (lower is better)
Translates to: SYRQGYDEAEGSIAK*LVHLHSPNHQYISG
Trigger: CCCGGAAATGTACTGGTGATTTGGGCTGTGAAGGTGAACCAGGCACTTCGCGATGCTACCTTCTGCTTCATCGTATCCCTGGCGGTAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
ENSMUST00000187631.2
CDS CCA 90 bp ACCGCCAGGGATACGATGAAGCAGAAGGTAGCATCGCGAAGTGCCTaGTTCACCTTCACAGCCCAAATCACCAGTACATTTCCGGGCACA +
Preference number: 5 (lower is better)
Translates to: TARDTMKQKVASRSA*FTFTAQITSTFPGT
Trigger: TGTGCCCGGAAATGTACTGGTGATTTGGGCTGTGAAGGTGAACCAGGCACTTCGCGATGCTACCTTCTGCTTCATCGTATCCCTGGCGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
ENSMUST00000187631.2
CDS TCA 90 bp GCTTGGGCTGGCATCGGAAGTGGTCGTTCCAAATCTTCAGAAAGGTaGCCCGGAACTTGTGGATTCGGAAGGCATAGACGATGGGGTTCA +
Preference number: 5 (lower is better)
Translates to: AWAGIGSGRSKSSER*PGTCGFGRHRRWGS
Trigger: TGAACCCCATCGTCTATGCCTTCCGAATCCACAAGTTCCGGGTCACCTTTCTGAAGATTTGGAACGACCACTTCCGATGCCAGCCCAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CAA 90 bp ATCCAGGCTCAGCAGAACATGGATTGGTCCCACCTGAGACCTCCACAAAAGCCTTTCTCGAACTCACACTaGATCACGGGCTCCCCAACA +
Preference number: 5 (lower is better)
Translates to: IQAQQNMDWSHLRPPQKPFSNSH*ITGSPT
Trigger: TGTTGGGGAGCCCGTGATCAAGTGTGAGTTCGAGAA...AGGCTTTTGTGGAGGTCTCAGGTGGGACCAATCCATGTTCTGCTGAGCCTGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
CDS-3UTR CAA 90 bp GAGACAATCCCTGGACCCATTCTTTCTGTGTCTCCCAAGTATAACCCTGGGCTTGTCTGTGGCCCAATGTaGATAAGGATGGCCAGTGGG +
Preference number: 5 (lower is better)
Translates to: ETIPGPILSVSPKYNPGLVCGPM*IRMASG
Trigger: CCCACTGGCCATCCTTATCAACATTGGGCCACAGAC...AAGCCCAGGGTTATACTTGGGAGACACAGAAAGAATGGGTCCAGGGATTGTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CAA 90 bp TGCCTGCTGTCCATACAAGGAAGACATCCAGGCTCAGCAGAACATGGATTGGTCTCCACCTCACTCAGGTaGTTCCAGCCAAACATGGGT +
Preference number: 5 (lower is better)
Translates to: CLLSIQGRHPGSAEHGLVSTSLR*FQPNMG
Trigger: ACCCATGTTTGGCTGGAACAACCTGAGTGAGGTGGA...GACCAATCCATGTTCTGCTGAGCCTGGATGTCTTCCTTGTATGGACAGCAGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
CDS-3UTR CAA 90 bp TGCCTGCTGTCCATACAAGGAAGACATCCAGGCTCAGCAGAACATGGATTGGTCGCTGACACCTTTTTGTaGAGCTGCTTGCGGATCAGG +
Preference number: 5 (lower is better)
Translates to: CLLSIQGRHPGSAEHGLVADTFL*SCLRIR
Trigger: CCTGATCCGCAAGCAGCTCAACAAAAAGGTGTCAGC...GACCAATCCATGTTCTGCTGAGCCTGGATGTCTTCCTTGTATGGACAGCAGGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
CDS-3UTR CAA 90 bp AGAAGGGGCAGAGACTGGCACCCTCTTCAGAGTTGTACACTGTATGAGAAGTATTCCACCTCACTCAGGTaGTTCCAGCCAAACATGGGT +
Preference number: 5 (lower is better)
Translates to: RRGRDWHPLQSCTLYEKYSTSLR*FQPNMG
Trigger: ACCCATGTTTGGCTGGAACAACCTGAGTGAGGTGGA...ATACTTCTCATACAGTGTACAACTCTGAAGAGGGTGCCAGTCTCTGCCCCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CAA 90 bp GTGAGCATTTTGTGTTTAAAAAGGAAAGCCACTCAGGTCTCAGAGGCAGACAGAATGAGGGCCAGCGACTaGGCGATCTTGAGCTCCTTC +
Preference number: 5 (lower is better)
Translates to: VSILCLKRKATQVSEADRMRASD*AILSSF
Trigger: GAAGGAGCTCAAGATCGCCAAGTCGCTGGCCCTCAT...TCTGTCTGCCTCTGAGACCTGAGTGGCTTTCCTTTTTAAACACAAAATGCTCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CAA 90 bp AAGCCACCTCCAGGAGCCTTTTGGATATTTAAATGCCAGCAAGGCACTTTCTCAGCTGACACCTTTTTGTaGAGCTGCTTGCGGATCAGG +
Preference number: 5 (lower is better)
Translates to: KPPPGAFWIFKCQQGTFSADTFL*SCLRIR
Trigger: CCTGATCCGCAAGCAGCTCAACAAAAAGGTGTCAGC...TGAGAAAGTGCCTTGCTGGCATTTAAATATCCAAAAGGCTCCTGGAGGTGGCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
CDS-3UTR CAA 90 bp ACTCCTTCAGTTACCTCTACTGAGAGTGTGGTGTCAAAGAGAAGATTGCGAGAGGCTGACACCTTTTTGTaGAGCTGCTTGCGGATCAGG +
Preference number: 5 (lower is better)
Translates to: TPSVTSTESVVSKRRLREADTFL*SCLRIR
Trigger: CCTGATCCGCAAGCAGCTCAACAAAAAGGTGTCAGC...CTCTCGCAATCTTCTCTTTGACACCACACTCTCAGTAGAGGTAACTGAAGGAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS-3UTR CAA 90 bp AAAGCAGTAGGCAGATCTGGGTACCATTTTTGTAGCAAAAGACAGAGAGCATGCTTCTCGAACTCACACTaGATCACGGGCTCCCCAACA +
Preference number: 5 (lower is better)
Translates to: KAVGRSGYHFCSKRQRACFSNSH*ITGSPT
Trigger: TGTTGGGGAGCCCGTGATCAAGTGTGAGTTCGAGAA...GCATGCTCTCTGTCTTTTGCTACAAAAATGGTACCCAGATCTGCCTACTGCTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS GCA 72 bp AAGGGAGAGAATCCAGCAGCCGGCTATGGCCACTGCTaGCCGCCGCTGAGTCACCACTGTCTTGTACCGGAG +
Preference number: 6 (lower is better)
Translates to: KGENPAAGYGHC*PPLSHHCLVPE
Trigger: CTCCGGTACAAGACAGTGGTGACTCAGCGGCGGGCAGCAGTGGCCATAGCCGGCTGCTGGATTCTCTCCCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
ENSMUST00000187631.2
CDS GCA 72 bp CACAAGGGAGAGAATCCAGCAGCCGGCTATGGCCACTaGTGCCCGCCGCTGAGTCACCACTGTCTTGTACCG +
Preference number: 6 (lower is better)
Translates to: HKGENPAAGYGH*CPPLSHHCLVP
Trigger: CGGTACAAGACAGTGGTGACTCAGCGGCGGGCAGCAGTGGCCATAGCCGGCTGCTGGATTCTCTCCCTTGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
ENSMUST00000187631.2
CDS CCA 72 bp GTAGGTCTGTGGCCCAATGTTGATAAGGATGGCCAGTaGGATGACCAGGGCGCCAACAGCCACATCAGCTAC +
Preference number: 6 (lower is better)
Translates to: VGLWPNVDKDGQ*DDQGANSHISY
Trigger: GTAGCTGATGTGGCTGTTGGCGCCCTGGTCATCCCACTGGCCATCCTTATCAACATTGGGCCACAGACCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
ENSMUST00000187631.2
CDS CAA 72 bp CACGGGCTCCCCAACACTGCCGTTGGCTATCCAGGCTaGTTCCACCTCACTCAGGTTGTTCCAGCCAAACAT +
Preference number: 6 (lower is better)
Translates to: HGLPNTAVGYPG*FHLTQVVPAKH
Trigger: ATGTTTGGCTGGAACAACCTGAGTGAGGTGGAACAAGCCTGGATAGCCAACGGCAGTGTTGGGGAGCCCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
ENSMUST00000187631.2
CDS CAA 90 bp ACACTTGATCACGGGCTCCCCAACACTGCCGTTGGCTATCCAGGCTaGTTCCACCTCACTCAGGTTGTTCCAGCCAAACATGGGTGTCAG +
Preference number: 6 (lower is better)
Translates to: TLDHGLPNTAVGYPG*FHLTQVVPAKHGCQ
Trigger: CTGACACCCATGTTTGGCTGGAACAACCTGAGTGAGGTGGAACAAGCCTGGATAGCCAACGGCAGTGTTGGGGAGCCCGTGATCAAGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
ENSMUST00000187631.2
CDS CAA 90 bp ACCTTCTCGAACTCACACTTGATCACGGGCTCCCCAACACTGCCGTaGGCTATCCAGGCTTGTTCCACCTCACTCAGGTTGTTCCAGCCA +
Preference number: 6 (lower is better)
Translates to: TFSNSHLITGSPTLP*AIQACSTSLRLFQP
Trigger: TGGCTGGAACAACCTGAGTGAGGTGGAACAAGCCTGGATAGCCAACGGCAGTGTTGGGGAGCCCGTGATCAAGTGTGAGTTCGAGAAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
ENSMUST00000187631.2
CDS TCA 72 bp TCACCAGTACATTTCCGGGCACAGAGACCAAGGCAATaGGCACCTCGATGCCAATGTAGGCAGCCTGGAAGG +
Preference number: 6 (lower is better)
Translates to: SPVHFRAQRPRQ*APRCQCRQPGR
Trigger: CCTTCCAGGCTGCCTACATTGGCATCGAGGTGCTCATTGCCTTGGTCTCTGTGCCCGGAAATGTACTGGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
ENSMUST00000187631.2
CDS TCA 72 bp TCTGGGGGTCACCAGAGGAGGCTGACACCTTTTTGTTaGGCTGCTTGCGGATCAGGTAGAAGACCTCCAGGT +
Preference number: 6 (lower is better)
Translates to: SGGHQRRLTPFC*AACGSGRRPPG
Trigger: ACCTGGAGGTCTTCTACCTGATCCGCAAGCAGCTCAACAAAAAGGTGTCAGCCTCCTCTGGTGACCCCCAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS CCA 72 bp ACAGGCCACCATGAGGCAGGTGTGGAAGTAGGTCTGTaGCCCAATGTTGATAAGGATGGCCAGTGGGATGAC +
Preference number: 6 (lower is better)
Translates to: TGHHEAGVEVGL*PNVDKDGQWDD
Trigger: GTCATCCCACTGGCCATCCTTATCAACATTGGGCCACAGACCTACTTCCACACCTGCCTCATGGTGGCCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
ENSMUST00000187631.2
CDS CAA 72 bp AACTCACACTTGATCACGGGCTCCCCAACACTGCCGTaGGCTATCCAGGCTTGTTCCACCTCACTCAGGTTG +
Preference number: 6 (lower is better)
Translates to: NSHLITGSPTLP*AIQACSTSLRL
Trigger: CAACCTGAGTGAGGTGGAACAAGCCTGGATAGCCAACGGCAGTGTTGGGGAGCCCGTGATCAAGTGTGAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
ENSMUST00000187631.2
CDS TCA 72 bp CTTCCCGTAGTACTTCTGGGGGTCACCAGAGGAGGCTaGCACCTTTTTGTTGAGCTGCTTGCGGATCAGGTA +
Preference number: 6 (lower is better)
Translates to: LPVVLLGVTRGG*HLFVELLADQV
Trigger: TACCTGATCCGCAAGCAGCTCAACAAAAAGGTGTCAGCCTCCTCTGGTGACCCCCAGAAGTACTACGGGAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS GCA 72 bp CAGGGATACGATGAAGCAGAAGGTAGCATCGCGAAGTaGCTGGTTCACCTTCACAGCCCAAATCACCAGTAC +
Preference number: 6 (lower is better)
Translates to: QGYDEAEGSIAK*LVHLHSPNHQY
Trigger: GTACTGGTGATTTGGGCTGTGAAGGTGAACCAGGCACTTCGCGATGCTACCTTCTGCTTCATCGTATCCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
ENSMUST00000187631.2
CDS TCA 72 bp GGCATCGGAAGTGGTCGTTCCAAATCTTCAGAAAGGTaGCCCGGAACTTGTGGATTCGGAAGGCATAGACGA +
Preference number: 6 (lower is better)
Translates to: GIGSGRSKSSER*PGTCGFGRHRR
Trigger: TCGTCTATGCCTTCCGAATCCACAAGTTCCGGGTCACCTTTCTGAAGATTTGGAACGACCACTTCCGATGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS CAA 72 bp ATGTACTCCATGCTGATAACCTTCTCGAACTCACACTaGATCACGGGCTCCCCAACACTGCCGTTGGCTATC +
Preference number: 6 (lower is better)
Translates to: MYSMLITFSNSH*ITGSPTLPLAI
Trigger: GATAGCCAACGGCAGTGTTGGGGAGCCCGTGATCAAGTGTGAGTTCGAGAAGGTTATCAGCATGGAGTACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
CDS CCA 72 bp GATACGATGAAGCAGAAGGTAGCATCGCGAAGTGCCTaGTTCACCTTCACAGCCCAAATCACCAGTACATTT +
Preference number: 6 (lower is better)
Translates to: DTMKQKVASRSA*FTFTAQITSTF
Trigger: AAATGTACTGGTGATTTGGGCTGTGAAGGTGAACCAGGCACTTCGCGATGCTACCTTCTGCTTCATCGTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038191.8
ENSMUST00000086465.6
ENSMUST00000169927.2
ENSMUST00000187631.2