RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ADNP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051149

Ensembl transcript IDs: ENSMUST00000057793.11, ENSMUST00000088001.6

Found 343 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GAAATGCTGAGAAGGCAGGTAGGTAAGGAACTACTTCTCCCTGTGTaGATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCAC +
Preference number: 1 (lower is better)
Translates to: EMLRRQVGKELLLPV*IHELPAYWFFTLHH
Trigger: GTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTAGTTCCTTACCTACCTGCCTTCTCAGCATTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR TCA 90 bp TACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTaGACAAAGATCAACCAGTCATCTATCATAGACTTGGAAATAACC +
Preference number: 1 (lower is better)
Translates to: YWFFTLHHRVYQRRV*TKINQSSIIDLEIT
Trigger: GGTTATTTCCAAGTCTATGATAGATGACTGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR-3UTR TCA 90 bp GTAGTGTGTATGCCCGCCCTGCACTACTATGTGAATCAGGATAAGGCTTTCCCAATCCCCACAGCCTGCTaGCTGACCAGTCCTTGCAAG +
Preference number: 2 (lower is better)
Translates to: VVCMPALHYYVNQDKAFPIPTAC*LTSPCK
Trigger: CTTGCAAGGACTGGTCAGTCAGCAGGCTGTGGGGAT...TGGGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGGCGGGCATACACACTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR-3UTR CCA 90 bp GCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCCACTGAGACTACAGTaGTCACACATCCCCACAGCC +
Preference number: 2 (lower is better)
Translates to: ATSLLVFHTSSPSLPEKSPLRLQ*SHIPTA
Trigger: GGCTGTGGGGATGTGTGACCACTGTAGTCTCAGTGG...ACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR-3UTR TCA 90 bp TATGTGCAAAAACTAAGTCTGTCCAAAGGTCCATACTATCGCAGGGTCAAGCTTATCCCCACAGCCTGCTaGCTGACCAGTCCTTGCAAG +
Preference number: 2 (lower is better)
Translates to: YVQKLSLSKGPYYRRVKLIPTAC*LTSPCK
Trigger: CTTGCAAGGACTGGTCAGTCAGCAGGCTGTGGGGAT...AAGCTTGACCCTGCGATAGTATGGACCTTTGGACAGACTTAGTTTTTGCACATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR-3UTR GCA 90 bp GTAGTGTGTATGCCCGCCCTGCACTACTATGTGAATCAGGATAAGGCTTTCCCACTACTTCTCCCTGTGTaGATTCATGAGCTACCAGCT +
Preference number: 2 (lower is better)
Translates to: VVCMPALHYYVNQDKAFPLLLPV*IHELPA
Trigger: AGCTGGTAGCTCATGAATGCACACAGGGAGAAGTAG...TGGGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGGCGGGCATACACACTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR-3UTR CCA 90 bp GGTCCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTCCACTGAGACTACAGTaGTCACACATCCCCACAGCC +
Preference number: 2 (lower is better)
Translates to: GPYYRRVKLLLGKLDIAFPLRLQ*SHIPTA
Trigger: GGCTGTGGGGATGTGTGACCACTGTAGTCTCAGTGG...AAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR-3UTR CCA 90 bp GGTCCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTGCTTTGCAGTCAGACTaGAAGGAGAGCAGAAGTCCA +
Preference number: 2 (lower is better)
Translates to: GPYYRRVKLLLGKLDIAFALQSD*KESRSP
Trigger: TGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGC...AAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGGACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR-3UTR CCA 90 bp TATGTGCAAAAACTAAGTCTGTCCAAAGGTCCATACTATCGCAGGGTCAAGCTTGCTTTGCAGTCAGACTaGAAGGAGAGCAGAAGTCCA +
Preference number: 2 (lower is better)
Translates to: YVQKLSLSKGPYYRRVKLALQSD*KESRSP
Trigger: TGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGC...AAGCTTGACCCTGCGATAGTATGGACCTTTGGACAGACTTAGTTTTTGCACATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR-3UTR TCA 90 bp CCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCCCCTGCACTACTATGTaGATCAGGATAAGGCTTTCC +
Preference number: 2 (lower is better)
Translates to: PYYRRVKLLLGKLDIAFIPCTTM*IRIRLS
Trigger: GGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGG...GATAAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR-3UTR GCA 90 bp TTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACAAAGATCAACCAGTTAGAAGACAGCTTTaGAGTCAGACTGGAAGGAGA +
Preference number: 2 (lower is better)
Translates to: FHTSSPSLPEKSLNKDQPVRRQL*SQTGRR
Trigger: TCTCCTTCCAGTCTGACTGCAAAGCTGTCTTCTAAC...TGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR-3UTR TCA 90 bp CCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCATCCAACCAAACATCTaGGGGGAAGAAATGCTGAGA +
Preference number: 2 (lower is better)
Translates to: PYYRRVKLLLGKLDIAFIIQPNI*GEEMLR
Trigger: TCTCAGCATTTCTTCCCCTCAGATGTTTGGTTGGAT...GATAAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR-3UTR GCA 90 bp GAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTCTACTTCTCCCTGTGTaGATTCATGAGCTACCAGCT +
Preference number: 2 (lower is better)
Translates to: ESRYISYVAGLFCKIVQGLLLPV*IHELPA
Trigger: AGCTGGTAGCTCATGAATGCACACAGGGAGAAGTAG...ACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR-3UTR GCA 90 bp CCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTTATGGTTAGAAGACAGCTTTaGAGTCAGACTGGAAGGAGA +
Preference number: 2 (lower is better)
Translates to: PDIYLMLLASFARLYKVMVRRQL*SQTGRR
Trigger: TCTCCTTCCAGTCTGACTGCAAAGCTGTCTTCTAAC...CATAACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR TCA 72 bp CTGAGACTACAGTGGTCACACATCCCCACAGCCTGCTaGCTGACCAGTCCTTGCAAGGTAGTGCCAGTTAGA +
Preference number: 3 (lower is better)
Translates to: LRLQWSHIPTAC*LTSPCKVVPVR
Trigger: TCTAACTGGCACTACCTTGCAAGGACTGGTCAGTCAGCAGGCTGTGGGGATGTGTGACCACTGTAGTCTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR TCA 72 bp AGGATAAGGCTTTCCCAGGACATCCAACCAAACATCTaGGGGGAAGAAATGCTGAGAAGGCAGGTAGGTAAG +
Preference number: 3 (lower is better)
Translates to: RIRLSQDIQPNI*GEEMLRRQVGK
Trigger: CTTACCTACCTGCCTTCTCAGCATTTCTTCCCCTCAGATGTTTGGTTGGATGTCCTGGGAAAGCCTTATCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR TCA 72 bp CAACCAGTCATCTATCATAGACTTGGAAATAACCACTaGGACTACAGTGGTCACACATCCCCACAGCCTGCT +
Preference number: 3 (lower is better)
Translates to: QPVIYHRLGNNH*DYSGHTSPQPA
Trigger: AGCAGGCTGTGGGGATGTGTGACCACTGTAGTCTCAGTGGTTATTTCCAAGTCTATGATAGATGACTGGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR TCA 72 bp AAAACGGTCCATGTTCCCAAGTCTACTAGACACATTTaGCTGGTAGTGTGTATGCCCGCCCTGCACTACTAT +
Preference number: 3 (lower is better)
Translates to: KTVHVPKSTRHI*LVVCMPALHYY
Trigger: ATAGTAGTGCAGGGCGGGCATACACACTACCAGTCAAATGTGTCTAGTAGACTTGGGAACATGGACCGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR CCA 72 bp CTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTaGTTTTTCACACTTCATCACCGAGTCTACCAGAGA +
Preference number: 3 (lower is better)
Translates to: LLPVCIHELPAY*FFTLHHRVYQR
Trigger: TCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR GCA 72 bp AGAAGGCAGGTAGGTAAGGAACTACTTCTCCCTGTGTaGATTCATGAGCTACCAGCTTACTGGTTTTTCACA +
Preference number: 3 (lower is better)
Translates to: RRQVGKELLLPV*IHELPAYWFFT
Trigger: TGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTAGTTCCTTACCTACCTGCCTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR TCA 72 bp TTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTaGACAAAGATCAACCAGTCATCTATCATAGACTTG +
Preference number: 3 (lower is better)
Translates to: FTLHHRVYQRRV*TKINQSSIIDL
Trigger: CAAGTCTATGATAGATGACTGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR-3UTR CAA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCTCATCTATCATAGACTaGGAAATAACCACTGAGACT +
Preference number: 3 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFSSIID*EITTET
Trigger: AGTCTCAGTGGTTATTTCCAAGTCTATGATAGATGA...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR-3UTR CAA 90 bp TATGTGCAAAAACTAAGTCTGTCCAAAGGTCCATACTATCGCAGGGTCAAGCTTTCATCTATCATAGACTaGGAAATAACCACTGAGACT +
Preference number: 3 (lower is better)
Translates to: YVQKLSLSKGPYYRRVKLSSIID*EITTET
Trigger: AGTCTCAGTGGTTATTTCCAAGTCTATGATAGATGA...AAGCTTGACCCTGCGATAGTATGGACCTTTGGACAGACTTAGTTTTTGCACATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp GTAGTGTGTATGCCCGCCCTGCACTACTATGTGAATCAGGATAAGGCTTTCCCATCTGCAGGGAGTACCTaGCTGCTGCTGGGGGCCTCT +
Preference number: 4 (lower is better)
Translates to: VVCMPALHYYVNQDKAFPSAGST*LLLGAS
Trigger: AGAGGCCCCCAGCAGCAGCCAGGTACTCCCTGCAGA...TGGGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGGCGGGCATACACACTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACGGCATGGTAAGCAACTaGTTCAGCCGGGGCATCCCT +
Preference number: 4 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHGMVSN*FSRGIP
Trigger: AGGGATGCCCCGGCTGAATCAGTTGCTTACCATGCC...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp GTAGTGTGTATGCCCGCCCTGCACTACTATGTGAATCAGGATAAGGCTTTCCCACAGAAGCAAGGGAGCTaGTTCGTGGTGGGAGTCCCA +
Preference number: 4 (lower is better)
Translates to: VVCMPALHYYVNQDKAFPQKQGS*FVVGVP
Trigger: TGGGACTCCCACCACGAATCAGCTCCCTTGCTTCTG...TGGGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGGCGGGCATACACACTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCCAGGGAGTACCTGGCTaGTGCTGGGGGCCTCTGCTC +
Preference number: 4 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFQGVPG*CWGPLL
Trigger: GAGCAGAGGCCCCCAGCAGCAGCCAGGTACTCCCTG...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGGGAGTACCTGGCTaGTGCTGGGGGCCTCTGCTC +
Preference number: 4 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYQGVPG*CWGPLL
Trigger: GAGCAGAGGCCCCCAGCAGCAGCCAGGTACTCCCTG...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp GCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTTCTGCAGGGAGTACCTaGCTGCTGCTGGGGGCCTCT +
Preference number: 4 (lower is better)
Translates to: ATSLLVFHTSSPSLPEKSSAGST*LLLGAS
Trigger: AGAGGCCCCCAGCAGCAGCCAGGTACTCCCTGCAGA...ACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp CAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAAGCCAGGCCTGGAGACTaGTTGAGCCGAGAAGGTGCG +
Preference number: 4 (lower is better)
Translates to: QLTGFSHFITESTREESEARPGD*LSREGA
Trigger: CGCACCTTCTCGGCTCAATCAGTCTCCAGGCCTGGC...TTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCGCCAGGCCTGGAGACTaGTTGAGCCGAGAAGGTGCG +
Preference number: 4 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFARPGD*LSREGA
Trigger: CGCACCTTCTCGGCTCAATCAGTCTCCAGGCCTGGC...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACGTCATGCTGTCAAACTaGTCCCCGTCCTCACTGTCA +
Preference number: 4 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHVMLSN*SPSSLS
Trigger: TGACAGTGAGGACGGGGAGCAGTTTGACAGCATGAC...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACCCAGTTAAGCTGCCATaGATGGGATCAGCAACTCCG +
Preference number: 4 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHPVKLP*MGSATP
Trigger: CGGAGTTGCTGATCCCATGCATGGCAGCTTAACTGG...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACCATAGGACTTGGGCATaGAAAGGCATCGCTTGCAGT +
Preference number: 4 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHHRTWA*KGIACS
Trigger: ACTGCAAGCGATGCCTTTTCATGCCCAAGTCCTATG...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp GCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTGGCATGGTAAGCAACTaGTTCAGCCGGGGCATCCCT +
Preference number: 4 (lower is better)
Translates to: ATSLLVFHTSSPSLPEKSGMVSN*FSRGIP
Trigger: AGGGATGCCCCGGCTGAATCAGTTGCTTACCATGCC...ACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACGAGACTGTTGAGGGATaGAAACTGGAGCATTGCCAC +
Preference number: 4 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHETVEG*KLEHCH
Trigger: GTGGCAATGCTCCAGTTTCCATCCCTCAACAGTCTC...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp GCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTGCCTGTGGCGGCTGGTaGAGGTTTAGAACTGGACTG +
Preference number: 4 (lower is better)
Translates to: ATSLLVFHTSSPSLPEKSACGGW*RFRTGL
Trigger: CAGTCCAGTTCTAAACCTCCACCAGCCGCCACAGGC...ACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCACAGGGGCCAGGCCTaGAGACTGATTGAGCCGAGA +
Preference number: 4 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYHRGQA*RLIEPR
Trigger: TCTCGGCTCAATCAGTCTCCAGGCCTGGCCCCTGTG...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp GTAGTGTGTATGCCCGCCCTGCACTACTATGTGAATCAGGATAAGGCTTTCCCATGTAGATGTGCTTCCTaGCGATCTCGTAGAGAGGGT +
Preference number: 4 (lower is better)
Translates to: VVCMPALHYYVNQDKAFPCRCAS*RSRREG
Trigger: ACCCTCTCTACGAGATCGTCAGGAAGCACATCTACA...TGGGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGGCGGGCATACACACTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp CAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAAGGCCTGGAGACTGATTaGGCCGAGAAGGTGCGTTTG +
Preference number: 4 (lower is better)
Translates to: QLTGFSHFITESTREESEGLETD*AEKVRL
Trigger: CAAACGCACCTTCTCGGCTCAATCAGTCTCCAGGCC...TTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp CAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAAGAGGGAGACTTCACTTaGCCTGGGGGTAGAGAGGTG +
Preference number: 4 (lower is better)
Translates to: QLTGFSHFITESTREESEEGDFT*PGGREV
Trigger: CACCTCTCTACCCCCAGGCCAAGTGAAGTCTCCCTC...TTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATGGCACAGTGGTTGCTTaGAGGAGGGCCTGTGGCGGC +
Preference number: 4 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNGTVVA*RRACGG
Trigger: GCCGCCACAGGCCCTCCTCCAAGCAACCACTGTGCC...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp GAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTGGCACAGTGGTTGCTTaGAGGAGGGCCTGTGGCGGC +
Preference number: 4 (lower is better)
Translates to: ESRYISYVAGLFCKIVQGGTVVA*RRACGG
Trigger: GCCGCCACAGGCCCTCCTCCAAGCAACCACTGTGCC...ACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACCCCTCAGGTTGTATGTaGTCACCAGGAGATGAATGT +
Preference number: 4 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHPSGCM*SPGDEC
Trigger: ACATTCATCTCCTGGTGACCACATACAACCTGAGGG...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp GTAGTGTGTATGCCCGCCCTGCACTACTATGTGAATCAGGATAAGGCTTTCCCAGGGAGACTGCACCATTaGGTGATTTTTCTCCTGCTT +
Preference number: 4 (lower is better)
Translates to: VVCMPALHYYVNQDKAFPGRLHH*VIFLLL
Trigger: AAGCAGGAGAAAAATCACTCAATGGTGCAGTCTCCC...TGGGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGGCGGGCATACACACTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp GCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCCCACTCTCAGATGGTaGAGCACCATCTTTCCACTC +
Preference number: 4 (lower is better)
Translates to: ATSLLVFHTSSPSLPEKSPTLRW*STIFPL
Trigger: GAGTGGAAAGATGGTGCTTCACCATCTGAGAGTGGG...ACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACGGTAAGTGCACTTCTTaGAGTAATACACGGCTTGCT +
Preference number: 4 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHGKCTS*SNTRLA
Trigger: AGCAAGCCGTGTATTACTGCAAGAAGTGCACTTACC...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACTGCTATGTAGGGTGCTaGCACGTGTTGAAAATGTTC +
Preference number: 4 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHCYVGC*HVLKMF
Trigger: GAACATTTTCAACACGTGGCAGCACCCTACATAGCA...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACAAGGGAGCTGATTCGTaGTGGGAGTCCCATGCCCTT +
Preference number: 4 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYKGADS*WESHAL
Trigger: AAGGGCATGGGACTCCCACCACGAATCAGCTCCCTT...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACAAAGATCAACCAGGGGTAGAGAGGTGTTaGCAGTCTGCAGGGAGTACC +
Preference number: 4 (lower is better)
Translates to: FHTSSPSLPEKSLNKDQPGVERC*QSAGST
Trigger: GGTACTCCCTGCAGACTGCCAACACCTCTCTACCCC...TGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACAAAGATCAACCAGAGGGAGACTTCACTTaGCCTGGGGGTAGAGAGGTG +
Preference number: 4 (lower is better)
Translates to: FHTSSPSLPEKSLNKDQPEGDFT*PGGREV
Trigger: CACCTCTCTACCCCCAGGCCAAGTGAAGTCTCCCTC...TGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TATGTGCAAAAACTAAGTCTGTCCAAAGGTCCATACTATCGCAGGGTCAAGCTTAGGGCCTGTGGCGGCTaGTGGAGGTTTAGAACTGGA +
Preference number: 4 (lower is better)
Translates to: YVQKLSLSKGPYYRRVKLRACGG*WRFRTG
Trigger: TCCAGTTCTAAACCTCCACCAGCCGCCACAGGCCCT...AAGCTTGACCCTGCGATAGTATGGACCTTTGGACAGACTTAGTTTTTGCACATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACTCCTCCTCCTCTTTTTaGTCTAGCTTCTCAGATTCC +
Preference number: 4 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHSSSSF*SSFSDS
Trigger: GGAATCTGAGAAGCTAGACCAAAAAGAGGAGGAGGA...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACACTGTGACTGGTCCTTaGACCAAAACCCTTCAACTT +
Preference number: 4 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHTVTGP*TKTLQL
Trigger: AAGTTGAAGGGTTTTGGTCCAAGGACCAGTCACAGT...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp CCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCCAGAAGCAAGGGAGCTaGTTCGTGGTGGGAGTCCCA +
Preference number: 4 (lower is better)
Translates to: PYYRRVKLLLGKLDIAFIQKQGS*FVVGVP
Trigger: TGGGACTCCCACCACGAATCAGCTCCCTTGCTTCTG...GATAAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp GCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTGTTTACCATCTGCTGTaGTGGCAACGACCGGACATT +
Preference number: 4 (lower is better)
Translates to: ATSLLVFHTSSPSLPEKSVYHLL*WQRPDI
Trigger: AATGTCCGGTCGTTGCCATCACAGCAGATGGTAAAC...ACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp GTAGTGTGTATGCCCGCCCTGCACTACTATGTGAATCAGGATAAGGCTTTCCCATCTGGCCCACAGATTTaGCTCCATAGTTGTTTTGCT +
Preference number: 4 (lower is better)
Translates to: VVCMPALHYYVNQDKAFPSGPQI*LHSCFA
Trigger: AGCAAAACAACTATGGAGTCAAATCTGTGGGCCAGA...TGGGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGGCGGGCATACACACTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACGAGTCTTTCTCATCGTaGTTTTCAAACAGCCACTCA +
Preference number: 4 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHESFSS*FSNSHS
Trigger: TGAGTGGCTGTTTGAAAATCACGATGAGAAAGACTC...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCCCACTCTCAGATGGTaGAGCACCATCTTTCCACTC +
Preference number: 4 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYPTLRW*STIFPL
Trigger: GAGTGGAAAGATGGTGCTTCACCATCTGAGAGTGGG...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACTTTTGCTATGTAGGGTaGTGCCACGTGTTGAAAATG +
Preference number: 4 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHFCYVG*CHVLKM
Trigger: CATTTTCAACACGTGGCAGCACCCTACATAGCAAAA...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACCTATCAGAGGCATCATaGATTAATTTGGCTGGTTCC +
Preference number: 4 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHLSEAS*INLAGS
Trigger: GGAACCAGCCAAATTAATGCATGATGCCTCTGATAG...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp GCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTTGGCAGCTGGCTTACTaGTCCTTGCATCTTCACTCT +
Preference number: 4 (lower is better)
Translates to: ATSLLVFHTSSPSLPEKSWQLAY*SLHLHS
Trigger: AGAGTGAAGATGCAAGGAGCAGTAAGCCAGCTGCCA...ACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp GTAGTGTGTATGCCCGCCCTGCACTACTATGTGAATCAGGATAAGGCTTTCCCATGCTACTTGGTGCGCTaGAGTTTGGAGCATGAAATA +
Preference number: 4 (lower is better)
Translates to: VVCMPALHYYVNQDKAFPCYLVR*SLEHEI
Trigger: TATTTCATGCTCCAAACTCCAGCGCACCAAGTAGCA...TGGGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGGCGGGCATACACACTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TATGTGCAAAAACTAAGTCTGTCCAAAGGTCCATACTATCGCAGGGTCAAGCTTAAGGGAGCTGATTCGTaGTGGGAGTCCCATGCCCTT +
Preference number: 4 (lower is better)
Translates to: YVQKLSLSKGPYYRRVKLKGADS*WESHAL
Trigger: AAGGGCATGGGACTCCCACCACGAATCAGCTCCCTT...AAGCTTGACCCTGCGATAGTATGGACCTTTGGACAGACTTAGTTTTTGCACATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp GTAGTGTGTATGCCCGCCCTGCACTACTATGTGAATCAGGATAAGGCTTTCCCAGTAGTTAGCTACGGCTaGGACTTTCTCAGCTTTATG +
Preference number: 4 (lower is better)
Translates to: VVCMPALHYYVNQDKAFPVVSYG*DFLSFM
Trigger: CATAAAGCTGAGAAAGTCCCAGCCGTAGCTAACTAC...TGGGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGGCGGGCATACACACTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCCAACACCCCTGCAGTaGACTAGATGCAGAGTGATG +
Preference number: 4 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYPTPLQ*TRCRVM
Trigger: CATCACTCTGCATCTAGTCCACTGCAGGGGTGTTGG...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATCACAGGGGCCAGGCCTaGAGACTGATTGAGCCGAGA +
Preference number: 4 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNHRGQA*RLIEPR
Trigger: TCTCGGCTCAATCAGTCTCCAGGCCTGGCCCCTGTG...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCATAGGACTTGGGCATaGAAAGGCATCGCTTGCAGT +
Preference number: 4 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYHRTWA*KGIACS
Trigger: ACTGCAAGCGATGCCTTTTCATGCCCAAGTCCTATG...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACACATCTGCTTTTTCCTaGACTTTTGGTTGTGGCTTT +
Preference number: 4 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHTSAFS*TFGCGF
Trigger: AAAGCCACAACCAAAAGTTCAGGAAAAAGCAGATGT...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp GCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTATGCAGAGTGATGGTTaGGGCTGTCATGTTGCTAGT +
Preference number: 4 (lower is better)
Translates to: ATSLLVFHTSSPSLPEKSMQSDG*GCHVAS
Trigger: ACTAGCAACATGACAGCCTCAACCATCACTCTGCAT...ACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACGGACTAGATGCAGAGTaGTGGTTGAGGCTGTCATGT +
Preference number: 4 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYGLDAE*WLRLSC
Trigger: ACATGACAGCCTCAACCATCACTCTGCATCTAGTCC...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp GAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTGGCCTGGAGACTGATTaGGCCGAGAAGGTGCGTTTG +
Preference number: 4 (lower is better)
Translates to: ESRYISYVAGLFCKIVQGGLETD*AEKVRL
Trigger: CAAACGCACCTTCTCGGCTCAATCAGTCTCCAGGCC...ACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp GTAGTGTGTATGCCCGCCCTGCACTACTATGTGAATCAGGATAAGGCTTTCCCAATTATCCTCAAAGTCTaGGATTTGTTGGGAACCAGG +
Preference number: 4 (lower is better)
Translates to: VVCMPALHYYVNQDKAFPIILKV*DLLGTR
Trigger: CCTGGTTCCCAACAAATCTCAGACTTTGAGGATAAT...TGGGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGGCGGGCATACACACTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp CCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCGAGGCTGCTACTTGGTaGGCTGGAGTTTGGAGCATG +
Preference number: 4 (lower is better)
Translates to: PYYRRVKLLLGKLDIAFIEAATW*AGVWSM
Trigger: CATGCTCCAAACTCCAGCGCACCAAGTAGCAGCCTC...GATAAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp GTAGTGTGTATGCCCGCCCTGCACTACTATGTGAATCAGGATAAGGCTTTCCCAGAATGTTGGTGTGACTaGCCTGTTGCAATGTCAAAT +
Preference number: 4 (lower is better)
Translates to: VVCMPALHYYVNQDKAFPECWCD*PVAMSN
Trigger: ATTTGACATTGCAACAGGGCAGTCACACCAACATTC...TGGGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGGCGGGCATACACACTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACTGGCAGCTGGCTTACTaGTCCTTGCATCTTCACTCT +
Preference number: 4 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYWQLAY*SLHLHS
Trigger: AGAGTGAAGATGCAAGGAGCAGTAAGCCAGCTGCCA...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACAAAGATCAACCAAGGCATCGCTTGCAGTaGATGTTACACTCCTCTCGG +
Preference number: 4 (lower is better)
Translates to: FHTSSPSLPEKSLNKDQPRHRLQ*MLHSSR
Trigger: CCGAGAGGAGTGTAACATCCACTGCAAGCGATGCCT...TGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACTCAGCATCAAGGGCTTaGCTCGGGGAACTACAACAT +
Preference number: 4 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYSASRA*LGELQH
Trigger: ATGTTGTAGTTCCCCGAGCCAAGCCCTTGATGCTGA...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACAAAGATCAACCAGGAGCTGATTCGTGGTaGGAGTCCCATGCCCTTTTT +
Preference number: 4 (lower is better)
Translates to: FHTSSPSLPEKSLNKDQPGADSW*ESHALF
Trigger: AAAAAGGGCATGGGACTCCCACCACGAATCAGCTCC...TGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATGGGGTAGAGAGGTGTTaGCAGTCTGCAGGGAGTACC +
Preference number: 4 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNGVERC*QSAGST
Trigger: GGTACTCCCTGCAGACTGCCAACACCTCTCTACCCC...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATAGGGCCTGTGGCGGCTaGTGGAGGTTTAGAACTGGA +
Preference number: 4 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNRACGG*WRFRTG
Trigger: TCCAGTTCTAAACCTCCACCAGCCGCCACAGGCCCT...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACTTGTCCTGGCCATTCTaGGTTTTTCCAACACCCCTG +
Preference number: 4 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYLSWPF*VFPTPL
Trigger: CAGGGGTGTTGGAAAAACCCAGAATGGCCAGGACAA...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACTCCATAGCCATAGACTaGCAGCTAACTTCTCAATTT +
Preference number: 4 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHSIAID*QLTSQF
Trigger: AAATTGAGAAGTTAGCTGCCAGTCTATGGCTATGGA...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp GCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTTGCATCTTCACTCTaGGAAGACTCATCAGACCAG +
Preference number: 4 (lower is better)
Translates to: ATSLLVFHTSSPSLPEKSLASSL*EDSSDQ
Trigger: CTGGTCTGATGAGTCTTCCCAGAGTGAAGATGCAAG...ACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACTTAAGCTGCCATGCATaGGATCAGCAACTCCGTCAG +
Preference number: 4 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYLSCHA*DQQLRQ
Trigger: CTGACGGAGTTGCTGATCCCATGCATGGCAGCTTAA...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp CAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAAATGCCCTTTTTGTCTTaGGGTTTGGGAGCTATCAGC +
Preference number: 4 (lower is better)
Translates to: QLTGFSHFITESTREESEMPFLS*GLGAIS
Trigger: GCTGATAGCTCCCAAACCTCAAGACAAAAAGGGCAT...TTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp GGTCCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTGTTTACCATCTGCTGTaGTGGCAACGACCGGACATT +
Preference number: 4 (lower is better)
Translates to: GPYYRRVKLLLGKLDIAFVYHLL*WQRPDI
Trigger: AATGTCCGGTCGTTGCCATCACAGCAGATGGTAAAC...AAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGGACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp CAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAAATGCAGAGTGATGGTTaGGGCTGTCATGTTGCTAGT +
Preference number: 4 (lower is better)
Translates to: QLTGFSHFITESTREESEMQSDG*GCHVAS
Trigger: ACTAGCAACATGACAGCCTCAACCATCACTCTGCAT...TTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp CAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAATGCATTTTCCCACTGTaGCTGGTCCTTGGACCAAAA +
Preference number: 4 (lower is better)
Translates to: QLTGFSHFITESTREESECIFPL*LVLGPK
Trigger: TTTTGGTCCAAGGACCAGTCACAGTGGGAAAATGCA...TTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp AGAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGGAGGCTGCTACTTGGTaGGCTGGAGTTTGGAGCATG +
Preference number: 4 (lower is better)
Translates to: RVQIYILCCWPLLQDCTREAATW*AGVWSM
Trigger: CATGCTCCAAACTCCAGCGCACCAAGTAGCAGCCTC...CCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp GGTCCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTGTGGTGGGAGTCCCATaGCCTTTTTGTCTTGAGGTT +
Preference number: 4 (lower is better)
Translates to: GPYYRRVKLLLGKLDIAFVVGVP*PFCLEV
Trigger: AACCTCAAGACAAAAAGGGCATGGGACTCCCACCAC...AAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGGACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp TTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACAAAGATCAACCACTGCAGTGGACTAGATaGAGAGTGATGGTTGAGGCT +
Preference number: 4 (lower is better)
Translates to: FHTSSPSLPEKSLNKDQPLQWTR*RVMVEA
Trigger: AGCCTCAACCATCACTCTGCATCTAGTCCACTGCAG...TGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCTTTTTCCAACACCCCTaGAGTGGACTAGATGCAGAG +
Preference number: 4 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFFFQHP*SGLDAE
Trigger: CTCTGCATCTAGTCCACTGCAGGGGTGTTGGAAAAA...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACAAAGATCAACCAGAGACTGTTGAGGGATaGAAACTGGAGCATTGCCAC +
Preference number: 4 (lower is better)
Translates to: FHTSSPSLPEKSLNKDQPETVEG*KLEHCH
Trigger: GTGGCAATGCTCCAGTTTCCATCCCTCAACAGTCTC...TGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACAAAGATCAACCACCAGGAGATGAATGTTaGTGTGACTGCCCTGTTGCA +
Preference number: 4 (lower is better)
Translates to: FHTSSPSLPEKSLNKDQPPGDEC*CDCPVA
Trigger: TGCAACAGGGCAGTCACACCAACATTCATCTCCTGG...TGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TATGTGCAAAAACTAAGTCTGTCCAAAGGTCCATACTATCGCAGGGTCAAGCTTTTGTCCTGGCCATTCTaGGTTTTTCCAACACCCCTG +
Preference number: 4 (lower is better)
Translates to: YVQKLSLSKGPYYRRVKLLSWPF*VFPTPL
Trigger: CAGGGGTGTTGGAAAAACCCAGAATGGCCAGGACAA...AAGCTTGACCCTGCGATAGTATGGACCTTTGGACAGACTTAGTTTTTGCACATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCAAGTCTGAGATTTGTTaGGAACCAGGCCCACTCTCA +
Preference number: 4 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFKSEIC*EPGPLS
Trigger: TGAGAGTGGGCCTGGTTCCCAACAAATCTCAGACTT...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TATGTGCAAAAACTAAGTCTGTCCAAAGGTCCATACTATCGCAGGGTCAAGCTTTTAAGCTGCCATGCATaGGATCAGCAACTCCGTCAG +
Preference number: 4 (lower is better)
Translates to: YVQKLSLSKGPYYRRVKLLSCHA*DQQLRQ
Trigger: CTGACGGAGTTGCTGATCCCATGCATGGCAGCTTAA...AAGCTTGACCCTGCGATAGTATGGACCTTTGGACAGACTTAGTTTTTGCACATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp CCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCTGTAGATGTGCTTCCTaGCGATCTCGTAGAGAGGGT +
Preference number: 4 (lower is better)
Translates to: PYYRRVKLLLGKLDIAFICRCAS*RSRREG
Trigger: ACCCTCTCTACGAGATCGTCAGGAAGCACATCTACA...GATAAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp TATGTGCAAAAACTAAGTCTGTCCAAAGGTCCATACTATCGCAGGGTCAAGCTTGGGAGACTGCACCATTaGGTGATTTTTCTCCTGCTT +
Preference number: 4 (lower is better)
Translates to: YVQKLSLSKGPYYRRVKLGRLHH*VIFLLL
Trigger: AAGCAGGAGAAAAATCACTCAATGGTGCAGTCTCCC...AAGCTTGACCCTGCGATAGTATGGACCTTTGGACAGACTTAGTTTTTGCACATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCGTTCATGGTCCTCAATaGCATGCTGTACCAAAGCTT +
Preference number: 4 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFVHGPQ*HAVPKL
Trigger: AAGCTTTGGTACAGCATGTCATTGAGGACCATGAAC...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACTCTTCTCTACATCATTaGAGGTGGAACGGCAATACG +
Preference number: 4 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYSSLHH*RWNGNT
Trigger: CGTATTGCCGTTCCACCTTCAATGATGTAGAGAAGA...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp CCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCCACTGCAGCTTGAGGTaGACTTTTAACCGGGACATC +
Preference number: 4 (lower is better)
Translates to: PYYRRVKLLLGKLDIAFIHCSLR*TFNRDI
Trigger: GATGTCCCGGTTAAAAGTTCACCTCAAGCTGCAGTG...GATAAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp CCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCGGACTAGATGCAGAGTaGTGGTTGAGGCTGTCATGT +
Preference number: 4 (lower is better)
Translates to: PYYRRVKLLLGKLDIAFIGLDAE*WLRLSC
Trigger: ACATGACAGCCTCAACCATCACTCTGCATCTAGTCC...GATAAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp CAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAATCTTCCTCTTGTTACTaGAATGGGAGGCAATGTCAC +
Preference number: 4 (lower is better)
Translates to: QLTGFSHFITESTREESESSSCY*NGRQCH
Trigger: GTGACATTGCCTCCCATTTCAGTAACAAGAGGAAGA...TTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACGGTAAGTGCACTTCTTaGAGTAATACACGGCTTGCT +
Preference number: 4 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYGKCTS*SNTRLA
Trigger: AGCAAGCCGTGTATTACTGCAAGAAGTGCACTTACC...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCGAGGGTCTCGGTAAGTaGACTTCTTGCAGTAATACA +
Preference number: 4 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFEGLGK*TSCSNT
Trigger: TGTATTACTGCAAGAAGTGCACTTACCGAGACCCTC...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACGAGGGTCTCGGTAAGTaGACTTCTTGCAGTAATACA +
Preference number: 4 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYEGLGK*TSCSNT
Trigger: TGTATTACTGCAAGAAGTGCACTTACCGAGACCCTC...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp CAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAATGCTATGTAGGGTGCTaGCACGTGTTGAAAATGTTC +
Preference number: 4 (lower is better)
Translates to: QLTGFSHFITESTREESECYVGC*HVLKMF
Trigger: GAACATTTTCAACACGTGGCAGCACCCTACATAGCA...TTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp GAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTGTCATGCTGTCAAACTaGTCCCCGTCCTCACTGTCA +
Preference number: 4 (lower is better)
Translates to: ESRYISYVAGLFCKIVQGVMLSN*SPSSLS
Trigger: TGACAGTGAGGACGGGGAGCAGTTTGACAGCATGAC...ACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATCCAGTTAAGCTGCCATaGATGGGATCAGCAACTCCG +
Preference number: 4 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNPVKLP*MGSATP
Trigger: CGGAGTTGCTGATCCCATGCATGGCAGCTTAACTGG...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCTGCTACTTGGTGCGCTaGAGTTTGGAGCATGAAATA +
Preference number: 4 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFCYLVR*SLEHEI
Trigger: TATTTCATGCTCCAAACTCCAGCGCACCAAGTAGCA...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATGGAGCTGATTCGTGGTaGGAGTCCCATGCCCTTTTT +
Preference number: 4 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNGADSW*ESHALF
Trigger: AAAAAGGGCATGGGACTCCCACCACGAATCAGCTCC...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp CCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCCCAGGAGATGAATGTTaGTGTGACTGCCCTGTTGCA +
Preference number: 4 (lower is better)
Translates to: PYYRRVKLLLGKLDIAFIPGDEC*CDCPVA
Trigger: TGCAACAGGGCAGTCACACCAACATTCATCTCCTGG...GATAAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TATGTGCAAAAACTAAGTCTGTCCAAAGGTCCATACTATCGCAGGGTCAAGCTTTGGCTTTGGAGGAACTaGGGCATTATTTTGGGCATG +
Preference number: 4 (lower is better)
Translates to: YVQKLSLSKGPYYRRVKLWLWRN*GIILGM
Trigger: CATGCCCAAAATAATGCCCCAGTTCCTCCAAAGCCA...AAGCTTGACCCTGCGATAGTATGGACCTTTGGACAGACTTAGTTTTTGCACATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACAAAGATCAACCATGGCTTTGGAGGAACTaGGGCATTATTTTGGGCATG +
Preference number: 4 (lower is better)
Translates to: FHTSSPSLPEKSLNKDQPWLWRN*GIILGM
Trigger: CATGCCCAAAATAATGCCCCAGTTCCTCCAAAGCCA...TGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCTCCTCCTCCTCTTTTTaGTCTAGCTTCTCAGATTCC +
Preference number: 4 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFSSSSF*SSFSDS
Trigger: GGAATCTGAGAAGCTAGACCAAAAAGAGGAGGAGGA...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TATGTGCAAAAACTAAGTCTGTCCAAAGGTCCATACTATCGCAGGGTCAAGCTTAAGTCTGAGATTTGTTaGGAACCAGGCCCACTCTCA +
Preference number: 4 (lower is better)
Translates to: YVQKLSLSKGPYYRRVKLKSEIC*EPGPLS
Trigger: TGAGAGTGGGCCTGGTTCCCAACAAATCTCAGACTT...AAGCTTGACCCTGCGATAGTATGGACCTTTGGACAGACTTAGTTTTTGCACATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACAAAGATCAACCATTTTCCCACTGTGACTaGTCCTTGGACCAAAACCCT +
Preference number: 4 (lower is better)
Translates to: FHTSSPSLPEKSLNKDQPFSHCD*SLDQNP
Trigger: AGGGTTTTGGTCCAAGGACCAGTCACAGTGGGAAAA...TGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp GGTCCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTTTTTCCCACTGTGACTaGTCCTTGGACCAAAACCCT +
Preference number: 4 (lower is better)
Translates to: GPYYRRVKLLLGKLDIAFFSHCD*SLDQNP
Trigger: AGGGTTTTGGTCCAAGGACCAGTCACAGTGGGAAAA...AAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGGACC
44% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp TTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACAAAGATCAACCATCTTCCTCTTGTTACTaGAATGGGAGGCAATGTCAC +
Preference number: 4 (lower is better)
Translates to: FHTSSPSLPEKSLNKDQPSSSCY*NGRQCH
Trigger: GTGACATTGCCTCCCATTTCAGTAACAAGAGGAAGA...TGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp TTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACAAAGATCAACCATCTACATTGTCAGCCTaGTTAGGTTTAAGGCCATCG +
Preference number: 4 (lower is better)
Translates to: FHTSSPSLPEKSLNKDQPSTLSA*LGLRPS
Trigger: CGATGGCCTTAAACCTAAGCAGGCTGACAATGTAGA...TGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACTTTTGCTATGTAGGGTaGTGCCACGTGTTGAAAATG +
Preference number: 4 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYFCYVG*CHVLKM
Trigger: CATTTTCAACACGTGGCAGCACCCTACATAGCAAAA...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATGTGGTGGGAGTCCCATaGCCTTTTTGTCTTGAGGTT +
Preference number: 4 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNVVGVP*PFCLEV
Trigger: AACCTCAAGACAAAAAGGGCATGGGACTCCCACCAC...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp AGAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGCTGCAGTGGACTAGATaGAGAGTGATGGTTGAGGCT +
Preference number: 4 (lower is better)
Translates to: RVQIYILCCWPLLQDCTRLQWTR*RVMVEA
Trigger: AGCCTCAACCATCACTCTGCATCTAGTCCACTGCAG...CCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp CAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAATTTTGTCTTGAGGTTTaGGAGCTATCAGCATCAAGG +
Preference number: 4 (lower is better)
Translates to: QLTGFSHFITESTREESEFCLEV*ELSASR
Trigger: CCTTGATGCTGATAGCTCCCAAACCTCAAGACAAAA...TTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp CCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTTATGCCAACACCCCTGCAGTaGACTAGATGCAGAGTGATG +
Preference number: 4 (lower is better)
Translates to: PDIYLMLLASFARLYKVMPTPLQ*TRCRVM
Trigger: CATCACTCTGCATCTAGTCCACTGCAGGGGTGTTGG...CATAACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACAAAGATCAACCATCTCAATTTCTCTCCTaGTGGGATAGGGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: FHTSSPSLPEKSLNKDQPSQFLS*WDRAVC
Trigger: ACAAACAGCCCTATCCCACCAGGAGAGAAATTGAGA...TGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCGACTCCCGCTTCCATTaGATTCTTCTTCCAAATGTT +
Preference number: 4 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFDSRFH*ILLPNV
Trigger: AACATTTGGAAGAAGAATCCAATGGAAGCGGGAGTC...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp CCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCCTTGCATCTTCACTCTaGGAAGACTCATCAGACCAG +
Preference number: 4 (lower is better)
Translates to: PYYRRVKLLLGKLDIAFILASSL*EDSSDQ
Trigger: CTGGTCTGATGAGTCTTCCCAGAGTGAAGATGCAAG...GATAAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCTCTTTTTATCTGCATTaGAGGTACAGTAAGGGCAGT +
Preference number: 4 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFSFYLH*RYSKGS
Trigger: ACTGCCCTTACTGTACCTTCAATGCAGATAAAAAGA...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATATGCCCTTTTTGTCTTaGGGTTTGGGAGCTATCAGC +
Preference number: 4 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNMPFLS*GLGAIS
Trigger: GCTGATAGCTCCCAAACCTCAAGACAAAAAGGGCAT...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCCATTGGACATCATGTTaGCTCCCGTTGAATTTAAGT +
Preference number: 4 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFHWTSC*LPLNLS
Trigger: ACTTAAATTCAACGGGAGTCAACATGATGTCCAATG...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp CAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAAGGACAAGACAGACCATaGATTAACATATGGTTGAGT +
Preference number: 4 (lower is better)
Translates to: QLTGFSHFITESTREESEGQDRP*INIWLS
Trigger: ACTCAACCATATGTTAATTCATGGTCTGTCTTGTCC...TTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp CCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCTCTTCTCTACATCATTaGAGGTGGAACGGCAATACG +
Preference number: 4 (lower is better)
Translates to: PYYRRVKLLLGKLDIAFISSLHH*RWNGNT
Trigger: CGTATTGCCGTTCCACCTTCAATGATGTAGAGAAGA...GATAAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCTGTCTTTCTCGTAAATaGTGTGCAAGTGCATCAGAT +
Preference number: 4 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFCLSRK*CASASD
Trigger: ATCTGATGCACTTGCACATCATTTACGAGAAAGACA...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp TATGTGCAAAAACTAAGTCTGTCCAAAGGTCCATACTATCGCAGGGTCAAGCTTGAGTCTTTCTCATCGTaGTTTTCAAACAGCCACTCA +
Preference number: 4 (lower is better)
Translates to: YVQKLSLSKGPYYRRVKLESFSS*FSNSHS
Trigger: TGAGTGGCTGTTTGAAAATCACGATGAGAAAGACTC...AAGCTTGACCCTGCGATAGTATGGACCTTTGGACAGACTTAGTTTTTGCACATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp TATGTGCAAAAACTAAGTCTGTCCAAAGGTCCATACTATCGCAGGGTCAAGCTTGCTAGCATTGACTCTTaGGTCTTTCTCATCGTGATT +
Preference number: 4 (lower is better)
Translates to: YVQKLSLSKGPYYRRVKLASIDS*VFLIVI
Trigger: AATCACGATGAGAAAGACTCAAGAGTCAATGCTAGC...AAGCTTGACCCTGCGATAGTATGGACCTTTGGACAGACTTAGTTTTTGCACATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp TATGTGCAAAAACTAAGTCTGTCCAAAGGTCCATACTATCGCAGGGTCAAGCTTATTATCCTCAAAGTCTaGGATTTGTTGGGAACCAGG +
Preference number: 4 (lower is better)
Translates to: YVQKLSLSKGPYYRRVKLIILKV*DLLGTR
Trigger: CCTGGTTCCCAACAAATCTCAGACTTTGAGGATAAT...AAGCTTGACCCTGCGATAGTATGGACCTTTGGACAGACTTAGTTTTTGCACATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATTGCATTTTCCCACTGTaGCTGGTCCTTGGACCAAAA +
Preference number: 4 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNCIFPL*LVLGPK
Trigger: TTTTGGTCCAAGGACCAGTCACAGTGGGAAAATGCA...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp TATGTGCAAAAACTAAGTCTGTCCAAAGGTCCATACTATCGCAGGGTCAAGCTTCATTCGCATGTGTGCTaGCATCTTCTCTACATCATT +
Preference number: 4 (lower is better)
Translates to: YVQKLSLSKGPYYRRVKLHSHVC*HLLYII
Trigger: AATGATGTAGAGAAGATGGCAGCACACATGCGAATG...AAGCTTGACCCTGCGATAGTATGGACCTTTGGACAGACTTAGTTTTTGCACATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp CAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAATCAATTGTGCTATTCTaGCACTCAATCTGTGGGTTT +
Preference number: 4 (lower is better)
Translates to: QLTGFSHFITESTREESESIVLF*HSICGF
Trigger: AAACCCACAGATTGAGTGGCAGAATAGCACAATTGA...TTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp CCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTTATGTCAGCATCAAGGGCTTaGCTCGGGGAACTACAACAT +
Preference number: 4 (lower is better)
Translates to: PDIYLMLLASFARLYKVMSASRA*LGELQH
Trigger: ATGTTGTAGTTCCCCGAGCCAAGCCCTTGATGCTGA...CATAACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACAAAGATCAACCACTCTTGTTACTGAAATaGGAGGCAATGTCACTCTTC +
Preference number: 4 (lower is better)
Translates to: FHTSSPSLPEKSLNKDQPLLLLK*EAMSLF
Trigger: GAAGAGTGACATTGCCTCCCATTTCAGTAACAAGAG...TGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp GGTCCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTGACTCCCGCTTCCATTaGATTCTTCTTCCAAATGTT +
Preference number: 4 (lower is better)
Translates to: GPYYRRVKLLLGKLDIAFDSRFH*ILLPNV
Trigger: AACATTTGGAAGAAGAATCCAATGGAAGCGGGAGTC...AAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGGACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATGACTGCACCATTGAGTaGTTTTTCTCCTGCTTTTGC +
Preference number: 4 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNDCTIE*FFSCFC
Trigger: GCAAAAGCAGGAGAAAAATCACTCAATGGTGCAGTC...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp GAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTGTTCATGGTCCTCAATaGCATGCTGTACCAAAGCTT +
Preference number: 4 (lower is better)
Translates to: ESRYISYVAGLFCKIVQGVHGPQ*HAVPKL
Trigger: AAGCTTTGGTACAGCATGTCATTGAGGACCATGAAC...ACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp GGTCCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCTCTTCATCAATATaGACCATTCGCATGTGTGCT +
Preference number: 4 (lower is better)
Translates to: GPYYRRVKLLLGKLDIAFISSSI*TIRMCA
Trigger: AGCACACATGCGAATGGTTCATATTGATGAAGAGAT...AAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGGACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp CCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCGCTAGCATTGACTCTTaGGTCTTTCTCATCGTGATT +
Preference number: 4 (lower is better)
Translates to: PYYRRVKLLLGKLDIAFIASIDS*VFLIVI
Trigger: AATCACGATGAGAAAGACTCAAGAGTCAATGCTAGC...GATAAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp AGAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTTTTTCTCCTGCTTTTaGTATGTAGGGTGCTGCCAC +
Preference number: 4 (lower is better)
Translates to: RVQIYILCCWPLLQDCTRFFSCF*YVGCCH
Trigger: GTGGCAGCACCCTACATAGCAAAAGCAGGAGAAAAA...CCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp CCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCCATTCGCATGTGTGCTaGCATCTTCTCTACATCATT +
Preference number: 4 (lower is better)
Translates to: PYYRRVKLLLGKLDIAFIHSHVC*HLLYII
Trigger: AATGATGTAGAGAAGATGGCAGCACACATGCGAATG...GATAAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp GAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTAACCATTCGCATGTGTaGTGCCATCTTCTCTACATC +
Preference number: 4 (lower is better)
Translates to: ESRYISYVAGLFCKIVQGNHSHV*CHLLYI
Trigger: GATGTAGAGAAGATGGCAGCACACATGCGAATGGTT...ACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATAACCATTCGCATGTGTaGTGCCATCTTCTCTACATC +
Preference number: 4 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNNHSHV*CHLLYI
Trigger: GATGTAGAGAAGATGGCAGCACACATGCGAATGGTT...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp CCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTTATGTTTTTCCAACACCCCTaGAGTGGACTAGATGCAGAG +
Preference number: 4 (lower is better)
Translates to: PDIYLMLLASFARLYKVMFFQHP*SGLDAE
Trigger: CTCTGCATCTAGTCCACTGCAGGGGTGTTGGAAAAA...CATAACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCTCTTTCCCAAGGTTATaGTTTTTGTCAACAGTCTTG +
Preference number: 4 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFSFPRL*FLSTVL
Trigger: CAAGACTGTTGACAAAAAGCATAACCTTGGGAAAGA...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp CCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCCTATCAGAGGCATCATaGATTAATTTGGCTGGTTCC +
Preference number: 4 (lower is better)
Translates to: PYYRRVKLLLGKLDIAFILSEAS*INLAGS
Trigger: GGAACCAGCCAAATTAATGCATGATGCCTCTGATAG...GATAAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp CCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTTATGTGGCTTACTGCTCCTTaGATCTTCACTCTGGGAAGA +
Preference number: 4 (lower is better)
Translates to: PDIYLMLLASFARLYKVMWLTAP*IFTLGR
Trigger: TCTTCCCAGAGTGAAGATGCAAGGAGCAGTAAGCCA...CATAACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCTTCTTCCATTTTAACTaGTCTGTGTCATCTTGCACT +
Preference number: 4 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFFFHFN*SVSSCT
Trigger: AGTGCAAGATGACACAGAGCAGTTAAAATGGAAGAA...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp TTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACAAAGATCAACCATCAATTGTGCTATTCTaGCACTCAATCTGTGGGTTT +
Preference number: 4 (lower is better)
Translates to: FHTSSPSLPEKSLNKDQPSIVLF*HSICGF
Trigger: AAACCCACAGATTGAGTGGCAGAATAGCACAATTGA...TGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp CCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCTTTTGTCTTGAGGTTTaGGAGCTATCAGCATCAAGG +
Preference number: 4 (lower is better)
Translates to: PYYRRVKLLLGKLDIAFIFCLEV*ELSASR
Trigger: CCTTGATGCTGATAGCTCCCAAACCTCAAGACAAAA...GATAAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp CCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTTATGCCCTCAGGTTGTATGTaGTCACCAGGAGATGAATGT +
Preference number: 4 (lower is better)
Translates to: PDIYLMLLASFARLYKVMPSGCM*SPGDEC
Trigger: ACATTCATCTCCTGGTGACCACATACAACCTGAGGG...CATAACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATTCTCAATTTCTCTCCTaGTGGGATAGGGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNSQFLS*WDRAVC
Trigger: ACAAACAGCCCTATCCCACCAGGAGAGAAATTGAGA...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp CCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCCTCTTGTTACTGAAATaGGAGGCAATGTCACTCTTC +
Preference number: 4 (lower is better)
Translates to: PYYRRVKLLLGKLDIAFILLLLK*EAMSLF
Trigger: GAAGAGTGACATTGCCTCCCATTTCAGTAACAAGAG...GATAAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp CCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTTATGTCTGGCCCACAGATTTaGCTCCATAGTTGTTTTGCT +
Preference number: 4 (lower is better)
Translates to: PDIYLMLLASFARLYKVMSGPQI*LHSCFA
Trigger: AGCAAAACAACTATGGAGTCAAATCTGTGGGCCAGA...CATAACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp CCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCGGACAAGACAGACCATaGATTAACATATGGTTGAGT +
Preference number: 4 (lower is better)
Translates to: PYYRRVKLLLGKLDIAFIGQDRP*INIWLS
Trigger: ACTCAACCATATGTTAATTCATGGTCTGTCTTGTCC...GATAAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp CCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTTATGTTTTTCTCCTGCTTTTaGTATGTAGGGTGCTGCCAC +
Preference number: 4 (lower is better)
Translates to: PDIYLMLLASFARLYKVMFFSCF*YVGCCH
Trigger: GTGGCAGCACCCTACATAGCAAAAGCAGGAGAAAAA...CATAACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp AGAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGGAATGTTGGTGTGACTaGCCTGTTGCAATGTCAAAT +
Preference number: 4 (lower is better)
Translates to: RVQIYILCCWPLLQDCTRECWCD*PVAMSN
Trigger: ATTTGACATTGCAACAGGGCAGTCACACCAACATTC...CCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp TTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACAAAGATCAACCATCTTTCCCAAGGTTATaGTTTTTGTCAACAGTCTTG +
Preference number: 4 (lower is better)
Translates to: FHTSSPSLPEKSLNKDQPSFPRL*FLSTVL
Trigger: CAAGACTGTTGACAAAAAGCATAACCTTGGGAAAGA...TGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp TATGTGCAAAAACTAAGTCTGTCCAAAGGTCCATACTATCGCAGGGTCAAGCTTCCGTTGAATTTAAGTTaGGCTTTGGTATTGACAATC +
Preference number: 4 (lower is better)
Translates to: YVQKLSLSKGPYYRRVKLPLNLS*ALVLTI
Trigger: GATTGTCAATACCAAAGCCCAACTTAAATTCAACGG...AAGCTTGACCCTGCGATAGTATGGACCTTTGGACAGACTTAGTTTTTGCACATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp CCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTTATGGTAGTTAGCTACGGCTaGGACTTTCTCAGCTTTATG +
Preference number: 4 (lower is better)
Translates to: PDIYLMLLASFARLYKVMVVSYG*DFLSFM
Trigger: CATAAAGCTGAGAAAGTCCCAGCCGTAGCTAACTAC...CATAACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATTCTTTTTATCTGCATTaGAGGTACAGTAAGGGCAGT +
Preference number: 4 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNSFYLH*RYSKGS
Trigger: ACTGCCCTTACTGTACCTTCAATGCAGATAAAAAGA...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp AGAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGCATTGGACATCATGTTaGCTCCCGTTGAATTTAAGT +
Preference number: 4 (lower is better)
Translates to: RVQIYILCCWPLLQDCTRHWTSC*LPLNLS
Trigger: ACTTAAATTCAACGGGAGTCAACATGATGTCCAATG...CCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATTGTCTTTCTCGTAAATaGTGTGCAAGTGCATCAGAT +
Preference number: 4 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNCLSRK*CASASD
Trigger: ATCTGATGCACTTGCACATCATTTACGAGAAAGACA...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR GCA 90 bp CCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCTTCTTCCATTTTAACTaGTCTGTGTCATCTTGCACT +
Preference number: 4 (lower is better)
Translates to: PYYRRVKLLLGKLDIAFIFFHFN*SVSSCT
Trigger: AGTGCAAGATGACACAGAGCAGTTAAAATGGAAGAA...GATAAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp AGAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTCCATAGCCATAGACTaGCAGCTAACTTCTCAATTT +
Preference number: 4 (lower is better)
Translates to: RVQIYILCCWPLLQDCTRSIAID*QLTSQF
Trigger: AAATTGAGAAGTTAGCTGCCAGTCTATGGCTATGGA...CCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATTCAACTACATCATCTTaGTCTACCTCACTATCAGAG +
Preference number: 4 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNSTTSS*STSLSE
Trigger: CTCTGATAGTGAGGTAGACCAAGATGATGTAGTTGA...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp AGAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTCAACTACATCATCTTaGTCTACCTCACTATCAGAG +
Preference number: 4 (lower is better)
Translates to: RVQIYILCCWPLLQDCTRSTTSS*STSLSE
Trigger: CTCTGATAGTGAGGTAGACCAAGATGATGTAGTTGA...CCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR TCA 90 bp CCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTTATGATCTCTTCATCAATATaGACCATTCGCATGTGTGCT +
Preference number: 4 (lower is better)
Translates to: PDIYLMLLASFARLYKVMISSSI*TIRMCA
Trigger: AGCACACATGCGAATGGTTCATATTGATGAAGAGAT...CATAACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATTGGTGCGCTGGAGTTTaGAGCATGAAATATTTTAAT +
Preference number: 4 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNWCAGV*SMKYFN
Trigger: ATTAAAATATTTCATGCTCCAAACTCCAGCGCACCA...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp GAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTTGGTGCGCTGGAGTTTaGAGCATGAAATATTTTAAT +
Preference number: 4 (lower is better)
Translates to: ESRYISYVAGLFCKIVQGWCAGV*SMKYFN
Trigger: ATTAAAATATTTCATGCTCCAAACTCCAGCGCACCA...ACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATCCGTTGAATTTAAGTTaGGCTTTGGTATTGACAATC +
Preference number: 4 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNPLNLS*ALVLTI
Trigger: GATTGTCAATACCAAAGCCCAACTTAAATTCAACGG...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CCA 90 bp AGAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGCAAGTGCATCAGATATaGGTCCTTTTAGTATTGAAA +
Preference number: 4 (lower is better)
Translates to: RVQIYILCCWPLLQDCTRQVHQI*VLLVLK
Trigger: TTTCAATACTAAAAGGACCCATATCTGATGCACTTG...CCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR CAA 72 bp AGAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTaGCAAGATTGTACAAGGTTATGTGCAAAAACTAAG +
Preference number: 4 (lower is better)
Translates to: RVQIYILCCWPL*QDCTRLCAKTK
Trigger: CTTAGTTTTTGCACATAACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
3UTR CAA 72 bp TCTATAATACAGGAGAGTCCAGATATATATCTTATGTaGCTGGCCTCTTTTGCAAGATTGTACAAGGTTATG +
Preference number: 4 (lower is better)
Translates to: SIIQESPDIYLM*LASFARLYKVM
Trigger: CATAACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTCTCCTGTATTATAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 90 bp GAGGGAGACTTCACTTGGCCTGGGGGTAGAGAGGTGTTGGCAGTCTaGAGGGAGTACCTGGCTGCTGCTGGGGGCCTCTGCTCAGCACCT +
Preference number: 5 (lower is better)
Translates to: EGDFTWPGGREVLAV*REYLAAAGGLCSAP
Trigger: AGGTGCTGAGCAGAGGCCCCCAGCAGCAGCCAGGTACTCCCTGCAGACTGCCAACACCTCTCTACCCCCAGGCCAAGTGAAGTCTCCCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 90 bp GAGACACAGAGGGAGACTTCACTTGGCCTGGGGGTAGAGAGGTGTTaGCAGTCTGCAGGGAGTACCTGGCTGCTGCTGGGGGCCTCTGCT +
Preference number: 5 (lower is better)
Translates to: ETQRETSLGLGVERC*QSAGSTWLLLGASA
Trigger: AGCAGAGGCCCCCAGCAGCAGCCAGGTACTCCCTGCAGACTGCCAACACCTCTCTACCCCCAGGCCAAGTGAAGTCTCCCTCTGTGTCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 90 bp GTGTTGGCAGTCTGCAGGGAGTACCTGGCTGCTGCTGGGGGCCTCTaGTCAGCACCTAGCCCAAAAGACCTCCCATTCCCACTTGGAAGT +
Preference number: 5 (lower is better)
Translates to: VLAVCREYLAAAGGL*SAPSPKDLPFPLGS
Trigger: ACTTCCAAGTGGGAATGGGAGGTCTTTTGGGCTAGGTGCTGAGCAGAGGCCCCCAGCAGCAGCCAGGTACTCCCTGCAGACTGCCAACAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 90 bp TCCATCTGCTCATACGTGCGCTTCACAGGGGCCAGGCCTGGAGACTaGTTGAGCCGAGAAGGTGCGTTTGTCTTGTCCTGGCCATTCTGG +
Preference number: 5 (lower is better)
Translates to: SICSYVRFTGARPGD*LSREGAFVLSWPFW
Trigger: CCAGAATGGCCAGGACAAGACAAACGCACCTTCTCGGCTCAATCAGTCTCCAGGCCTGGCCCCTGTGAAGCGCACGTATGAGCAGATGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 90 bp TGGAAACTCCATCTGCTCATACGTGCGCTTCACAGGGGCCAGGCCTaGAGACTGATTGAGCCGAGAAGGTGCGTTTGTCTTGTCCTGGCC +
Preference number: 5 (lower is better)
Translates to: WKLHLLIRALHRGQA*RLIEPRRCVCLVLA
Trigger: GGCCAGGACAAGACAAACGCACCTTCTCGGCTCAATCAGTCTCCAGGCCTGGCCCCTGTGAAGCGCACGTATGAGCAGATGGAGTTTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 90 bp TCTGCTCATACGTGCGCTTCACAGGGGCCAGGCCTGGAGACTGATTaGGCCGAGAAGGTGCGTTTGTCTTGTCCTGGCCATTCTGGGTTT +
Preference number: 5 (lower is better)
Translates to: SAHTCASQGPGLETD*AEKVRLSCPGHSGF
Trigger: AAACCCAGAATGGCCAGGACAAGACAAACGCACCTTCTCGGCTCAATCAGTCTCCAGGCCTGGCCCCTGTGAAGCGCACGTATGAGCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 90 bp GCAAGGGAGCTGATTCGTGGTGGGAGTCCCATGCCCTTTTTGTCTTaGGGTTTGGGAGCTATCAGCATCAAGGGCTTGGCTCGGGGAACT +
Preference number: 5 (lower is better)
Translates to: ARELIRGGSPMPFLS*GLGAISIKGLARGT
Trigger: AGTTCCCCGAGCCAAGCCCTTGATGCTGATAGCTCCCAAACCTCAAGACAAAAAGGGCATGGGACTCCCACCACGAATCAGCTCCCTTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 90 bp AGGCTTGCTGGCTGCTCAGCTTCACTCCAGTTAAGCTGCCATGCATaGGATCAGCAACTCCGTCAGTCATGCTGTCAAACTGCTCCCCGT +
Preference number: 5 (lower is better)
Translates to: RLAGCSASLQLSCHA*DQQLRQSCCQTAPR
Trigger: ACGGGGAGCAGTTTGACAGCATGACTGACGGAGTTGCTGATCCCATGCATGGCAGCTTAACTGGAGTGAAGCTGAGCAGCCAGCAAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACGGGGGTAGAGAGGTGTaGGCAGTCTGCAGGGAGTAC +
Preference number: 5 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHGGREV*AVCREY
Trigger: GTACTCCCTGCAGACTGCCAACACCTCTCTACCCCC...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 90 bp TCTGCTGTGATGGCAACGACCGGACATTTCCAGAAGCAAGGGAGCTaGTTCGTGGTGGGAGTCCCATGCCCTTTTTGTCTTGAGGTTTGG +
Preference number: 5 (lower is better)
Translates to: SAVMATTGHFQKQGS*FVVGVPCPFCLEVW
Trigger: CCAAACCTCAAGACAAAAAGGGCATGGGACTCCCACCACGAATCAGCTCCCTTGCTTCTGGAAATGTCCGGTCGTTGCCATCACAGCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 90 bp ACTGTTTCACGGACTGAGACTGTTGAGGGATGGAAACTGGAGCATTaGCACCTAGTCCCAGCCTCACTGACTGGCCAACACCATAGCTCT +
Preference number: 5 (lower is better)
Translates to: TVSRTETVEGWKLEH*HLVPASLTGQHHSS
Trigger: AGAGCTATGGTGTTGGCCAGTCAGTGAGGCTGGGACTAGGTGGCAATGCTCCAGTTTCCATCCCTCAACAGTCTCAGTCCGTGAAACAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 90 bp TGGCAACGACCGGACATTTCCAGAAGCAAGGGAGCTGATTCGTGGTaGGAGTCCCATGCCCTTTTTGTCTTGAGGTTTGGGAGCTATCAG +
Preference number: 5 (lower is better)
Translates to: WQRPDISRSKGADSW*ESHALFVLRFGSYQ
Trigger: CTGATAGCTCCCAAACCTCAAGACAAAAAGGGCATGGGACTCCCACCACGAATCAGCTCCCTTGCTTCTGGAAATGTCCGGTCGTTGCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 90 bp ACAGATTGTACAGATTTTCCACTTCTGAGTGGCACAGTGGTTGCTTaGAGGAGGGCCTGTGGCGGCTGGTGGAGGTTTAGAACTGGACTG +
Preference number: 5 (lower is better)
Translates to: TDCTDFPLLSGTVVA*RRACGGWWRFRTGL
Trigger: CAGTCCAGTTCTAAACCTCCACCAGCCGCCACAGGCCCTCCTCCAAGCAACCACTGTGCCACTCAGAAGTGGAAAATCTGTACAATCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GTAGTGTGTATGCCCGCCCTGCACTACTATGTGAATCAGGATAAGGCTTTCCCAGGGGCATCCCTCAGGTaGTATGTGGTCACCAGGAGA +
Preference number: 5 (lower is better)
Translates to: VVCMPALHYYVNQDKAFPGASLR*YVVTRR
Trigger: TCTCCTGGTGACCACATACAACCTGAGGGATGCCCC...TGGGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGGCGGGCATACACACTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 90 bp ACACTCCTCTCGGGCATTTGTGCCCAGGGAGACTGCACCATTGAGTaGTTTTTCTCCTGCTTTTGCTATGTAGGGTGCTGCCACGTGTTG +
Preference number: 5 (lower is better)
Translates to: TLLSGICAQGDCTIE*FFSCFCYVGCCHVL
Trigger: CAACACGTGGCAGCACCCTACATAGCAAAAGCAGGAGAAAAATCACTCAATGGTGCAGTCTCCCTGGGCACAAATGCCCGAGAGGAGTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 90 bp TTCTCAGGGAAAAGCTCGTTACAGATTGTACAGATTTTCCACTTCTaGGTGGCACAGTGGTTGCTTGGAGGAGGGCCTGTGGCGGCTGGT +
Preference number: 5 (lower is better)
Translates to: FSGKSSLQIVQIFHF*VAQWLLGGGPVAAG
Trigger: ACCAGCCGCCACAGGCCCTCCTCCAAGCAACCACTGTGCCACTCAGAAGTGGAAAATCTGTACAATCTGTAACGAGCTTTTCCCTGAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 90 bp CATGGTAAGCAACTGATTCAGCCGGGGCATCCCTCAGGTTGTATGTaGTCACCAGGAGATGAATGTTGGTGTGACTGCCCTGTTGCAATG +
Preference number: 5 (lower is better)
Translates to: HGKQLIQPGHPSGCM*SPGDECWCDCPVAM
Trigger: CATTGCAACAGGGCAGTCACACCAACATTCATCTCCTGGTGACCACATACAACCTGAGGGATGCCCCGGCTGAATCAGTTGCTTACCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACATCAGCATCAAGGGCTaGGCTCGGGGAACTACAACA +
Preference number: 5 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHISIKG*ARGTTT
Trigger: TGTTGTAGTTCCCCGAGCCAAGCCCTTGATGCTGAT...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GTAGTGTGTATGCCCGCCCTGCACTACTATGTGAATCAGGATAAGGCTTTCCCAAGCAGCACACCAGGCTaGTACTTTTCACAGTCGCGG +
Preference number: 5 (lower is better)
Translates to: VVCMPALHYYVNQDKAFPSSTPG*YFSQSR
Trigger: CCGCGACTGTGAAAAGTACAAGCCTGGTGTGCTGCT...TGGGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGGCGGGCATACACACTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 90 bp AGGGTGCTGCCACGTGTTGAAAATGTTCCCTGTAGATGTGCTTCCTaGCGATCTCGTAGAGAGGGTCTCGGTAAGTGCACTTCTTGCAGT +
Preference number: 5 (lower is better)
Translates to: RVLPRVENVPCRCAS*RSRREGLGKCTSCS
Trigger: ACTGCAAGAAGTGCACTTACCGAGACCCTCTCTACGAGATCGTCAGGAAGCACATCTACAGGGAACATTTTCAACACGTGGCAGCACCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 90 bp TGTTACACTCCTCTCGGGCATTTGTGCCCAGGGAGACTGCACCATTaGGTGATTTTTCTCCTGCTTTTGCTATGTAGGGTGCTGCCACGT +
Preference number: 5 (lower is better)
Translates to: CYTPLGHLCPGRLHH*VIFLLLLLCRVLPR
Trigger: ACGTGGCAGCACCCTACATAGCAAAAGCAGGAGAAAAATCACTCAATGGTGCAGTCTCCCTGGGCACAAATGCCCGAGAGGAGTGTAACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 90 bp CTCCAGTTAAGCTGCCATGCATGGGATCAGCAACTCCGTCAGTCATaGTGTCAAACTGCTCCCCGTCCTCACTGTCAATTGTGCTATTCT +
Preference number: 5 (lower is better)
Translates to: LQLSCHAWDQQLRQS*CQTAPRPHCQLCYS
Trigger: AGAATAGCACAATTGACAGTGAGGACGGGGAGCAGTTTGACAGCATGACTGACGGAGTTGCTGATCCCATGCATGGCAGCTTAACTGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GTAGTGTGTATGCCCGCCCTGCACTACTATGTGAATCAGGATAAGGCTTTCCCAGAAGGTGCGTTTGTCTaGTCCTGGCCATTCTGGGTT +
Preference number: 5 (lower is better)
Translates to: VVCMPALHYYVNQDKAFPEGAFV*SWPFWV
Trigger: AACCCAGAATGGCCAGGACAAGACAAACGCACCTTC...TGGGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGGCGGGCATACACACTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 90 bp CCAGCCTCACTGACTGGCCAACACCATAGCTCTGGCCCACAGATTTaGCTCCATAGTTGTTTTGCTGCAGGTGAACATTGGACATCATGT +
Preference number: 5 (lower is better)
Translates to: PASLTGQHHSSGPQI*LHSCFAAGEHWTSC
Trigger: ACATGATGTCCAATGTTCACCTGCAGCAAAACAACTATGGAGTCAAATCTGTGGGCCAGAGCTATGGTGTTGGCCAGTCAGTGAGGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 90 bp TCCTGGCCATTCTGGGTTTTTCCAACACCCCTGCAGTGGACTAGATaGAGAGTGATGGTTGAGGCTGTCATGTTGCTAGTATACACACCA +
Preference number: 5 (lower is better)
Translates to: SWPFWVFPTPLQWTR*RVMVEAVMLLVYTP
Trigger: TGGTGTGTATACTAGCAACATGACAGCCTCAACCATCACTCTGCATCTAGTCCACTGCAGGGGTGTTGGAAAAACCCAGAATGGCCAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GTAGTGTGTATGCCCGCCCTGCACTACTATGTGAATCAGGATAAGGCTTTCCCAGGGTGCTGCCACGTGTaGAAAATGTTCCCTGTAGAT +
Preference number: 5 (lower is better)
Translates to: VVCMPALHYYVNQDKAFPGCCHV*KMFPVD
Trigger: ATCTACAGGGAACATTTTCAACACGTGGCAGCACCC...TGGGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGGCGGGCATACACACTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACCGTCCTCACTGTCAATaGTGCTATTCTGCCACTCAA +
Preference number: 5 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHRPHCQ*CYSATQ
Trigger: TTGAGTGGCAGAATAGCACAATTGACAGTGAGGACG...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 90 bp ATGCTGTCAAACTGCTCCCCGTCCTCACTGTCAATTGTGCTATTCTaGCACTCAATCTGTGGGTTTGGTAAGCGCTCTGCATTCTCAGAT +
Preference number: 5 (lower is better)
Translates to: MLSNCSPSSLSIVLF*HSICGFGKRSAFSD
Trigger: ATCTGAGAATGCAGAGCGCTTACCAAACCCACAGATTGAGTGGCAGAATAGCACAATTGACAGTGAGGACGGGGAGCAGTTTGACAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 90 bp TTTGTCTTGTCCTGGCCATTCTGGGTTTTTCCAACACCCCTGCAGTaGACTAGATGCAGAGTGATGGTTGAGGCTGTCATGTTGCTAGTA +
Preference number: 5 (lower is better)
Translates to: FVLSWPFWVFPTPLQ*TRCRVMVEAVMLLV
Trigger: TACTAGCAACATGACAGCCTCAACCATCACTCTGCATCTAGTCCACTGCAGGGGTGTTGGAAAAACCCAGAATGGCCAGGACAAGACAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GTAGTGTGTATGCCCGCCCTGCACTACTATGTGAATCAGGATAAGGCTTTCCCACATGCCCTTTTTGTCTaGAGGTTTGGGAGCTATCAG +
Preference number: 5 (lower is better)
Translates to: VVCMPALHYYVNQDKAFPHALFV*RFGSYQ
Trigger: CTGATAGCTCCCAAACCTCAAGACAAAAAGGGCATG...TGGGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGGCGGGCATACACACTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATGGAAACTGGAGCATaGCCACCTAGTCCCAGCCTC +
Preference number: 5 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFMETGA*PPSPSL
Trigger: GAGGCTGGGACTAGGTGGCAATGCTCCAGTTTCCAT...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GTAGTGTGTATGCCCGCCCTGCACTACTATGTGAATCAGGATAAGGCTTTCCCAGGTGTGACTGCCCTGTaGCAATGTCAAATCAAAGCT +
Preference number: 5 (lower is better)
Translates to: VVCMPALHYYVNQDKAFPGVTAL*QCQIKA
Trigger: AGCTTTGATTTGACATTGCAACAGGGCAGTCACACC...TGGGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGGCGGGCATACACACTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GGTCCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTGGGGCATCCCTCAGGTaGTATGTGGTCACCAGGAGA +
Preference number: 5 (lower is better)
Translates to: GPYYRRVKLLLGKLDIAFGASLR*YVVTRR
Trigger: TCTCCTGGTGACCACATACAACCTGAGGGATGCCCC...AAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTGAAGGTGCGTTTGTCTaGTCCTGGCCATTCTGGGTT +
Preference number: 5 (lower is better)
Translates to: ATSLLVFHTSSPSLPEKSEGAFV*SWPFWV
Trigger: AACCCAGAATGGCCAGGACAAGACAAACGCACCTTC...ACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACATCAGCATCAAGGGCTaGGCTCGGGGAACTACAACA +
Preference number: 5 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYISIKG*ARGTTT
Trigger: TGTTGTAGTTCCCCGAGCCAAGCCCTTGATGCTGAT...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp TATGTGCAAAAACTAAGTCTGTCCAAAGGTCCATACTATCGCAGGGTCAAGCTTCACGGACTGAGACTGTaGAGGGATGGAAACTGGAGC +
Preference number: 5 (lower is better)
Translates to: YVQKLSLSKGPYYRRVKLHGLRL*RDGNWS
Trigger: GCTCCAGTTTCCATCCCTCAACAGTCTCAGTCCGTG...AAGCTTGACCCTGCGATAGTATGGACCTTTGGACAGACTTAGTTTTTGCACATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACCTCAACTACATCATCTaGGTCTACCTCACTATCAGA +
Preference number: 5 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHLNYII*VYLTIR
Trigger: TCTGATAGTGAGGTAGACCAAGATGATGTAGTTGAG...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 90 bp GTTGAATTTAAGTTGGGCTTTGGTATTGACAATCGGTTTACCATCTaGTGTGATGGCAACGACCGGACATTTCCAGAAGCAAGGGAGCTG +
Preference number: 5 (lower is better)
Translates to: VEFKLGFGIDNRFTI*CDGNDRTFPEAREL
Trigger: CAGCTCCCTTGCTTCTGGAAATGTCCGGTCGTTGCCATCACAGCAGATGGTAAACCGATTGTCAATACCAAAGCCCAACTTAAATTCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 90 bp CGTTTTAGGCCCCATCTCTTCATCAATATGAACCATTCGCATGTGTaGTGCCATCTTCTCTACATCATTGAAGGTGGAACGGCAATACGG +
Preference number: 5 (lower is better)
Translates to: RFRPHLFINMNHSHV*CHLLYIIEGGTAIR
Trigger: CCGTATTGCCGTTCCACCTTCAATGATGTAGAGAAGATGGCAGCACACATGCGAATGGTTCATATTGATGAAGAGATGGGGCCTAAAACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 90 bp TACTTTTCACAGTCGCGGACACACTTCTTCCTCTTGTTACTGAAATaGGAGGCAATGTCACTCTTCCATAGCCATAGACTGGCAGCTAAC +
Preference number: 5 (lower is better)
Translates to: YFSQSRTHFFLLLLK*EAMSLFHSHRLAAN
Trigger: GTTAGCTGCCAGTCTATGGCTATGGAAGAGTGACATTGCCTCCCATTTCAGTAACAAGAGGAAGAAGTGTGTCCGCGACTGTGAAAAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GTAGTGTGTATGCCCGCCCTGCACTACTATGTGAATCAGGATAAGGCTTTCCCACTTAAACTGCCAAGATaGTTGACAGGAAGTTGGAAC +
Preference number: 5 (lower is better)
Translates to: VVCMPALHYYVNQDKAFPLKLPR*LTGSWN
Trigger: GTTCCAACTTCCTGTCAACAATCTTGGCAGTTTAAG...TGGGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGGCGGGCATACACACTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GAAGACAGCTTTGCAGTCAGACTGGAAGGAGAGCAGAAGTCCAGGATGCAACACACATTGGACATCATGTaGACTCCCGTTGAATTTAAG +
Preference number: 5 (lower is better)
Translates to: EDSFAVRLEGEQKSRMQHTLDIM*TPVEFK
Trigger: CTTAAATTCAACGGGAGTCAACATGATGTCCAATGT...GTGTTGCATCCTGGACTTCTGCTCTCCTTCCAGTCTGACTGCAAAGCTGTCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTGTTGAGGCTGTCATGTaGCTAGTATACACACCAAGG +
Preference number: 5 (lower is better)
Translates to: ATSLLVFHTSSPSLPEKSVEAVM*LVYTPR
Trigger: CCTTGGTGTGTATACTAGCAACATGACAGCCTCAAC...ACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 90 bp TTTAGGCCCCATCTCTTCATCAATATGAACCATTCGCATGTGTGCTaGCATCTTCTCTACATCATTGAAGGTGGAACGGCAATACGGACA +
Preference number: 5 (lower is better)
Translates to: FRPHLFINMNHSHVC*HLLYIIEGGTAIRT
Trigger: TGTCCGTATTGCCGTTCCACCTTCAATGATGTAGAGAAGATGGCAGCACACATGCGAATGGTTCATATTGATGAAGAGATGGGGCCTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 90 bp CCTGGTTTCATTTCACATGTATTATCCTCAAAGTCTGAGATTTGTTaGGAACCAGGCCCACTCTCAGATGGTGAAGCACCATCTTTCCAC +
Preference number: 5 (lower is better)
Translates to: PGFISHVLSSKSEIC*EPGPLSDGEAPSFH
Trigger: GTGGAAAGATGGTGCTTCACCATCTGAGAGTGGGCCTGGTTCCCAACAAATCTCAGACTTTGAGGATAATACATGTGAAATGAAACCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GTAGTGTGTATGCCCGCCCTGCACTACTATGTGAATCAGGATAAGGCTTTCCCATGCAGCAAAAAGGTTTaGTCCGATAGTCCTGATTTT +
Preference number: 5 (lower is better)
Translates to: VVCMPALHYYVNQDKAFPCSKKV*SDSPDF
Trigger: AAAATCAGGACTATCGGACAAAACCTTTTTGCTGCA...TGGGAAAGCCTTATCCTGATTCACATAGTAGTGCAGGGCGGGCATACACACTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp TTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACAAAGATCAACCAGCAGTAATACACGGCTaGCTCTACATTGTCAGCCTG +
Preference number: 5 (lower is better)
Translates to: FHTSSPSLPEKSLNKDQPAVIHG*LYIVSL
Trigger: CAGGCTGACAATGTAGAGCAAGCCGTGTATTACTGC...TGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATGAAAAGGCATCGCTaGCAGTGGATGTTACACTCC +
Preference number: 5 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFMKRHR*QWMLHS
Trigger: GGAGTGTAACATCCACTGCAAGCGATGCCTTTTCAT...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACATGAAAAGGCATCGCTaGCAGTGGATGTTACACTCC +
Preference number: 5 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYMKRHR*QWMLHS
Trigger: GGAGTGTAACATCCACTGCAAGCGATGCCTTTTCAT...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp CAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACATGCCCTTTTTGTCTaGAGGTTTGGGAGCTATCAG +
Preference number: 5 (lower is better)
Translates to: QLTGFSHFITESTREESEHALFV*RFGSYQ
Trigger: CTGATAGCTCCCAAACCTCAAGACAAAAAGGGCATG...TTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTATGGAAACTGGAGCATaGCCACCTAGTCCCAGCCTC +
Preference number: 5 (lower is better)
Translates to: ESRYISYVAGLFCKIVQGMETGA*PPSPSL
Trigger: GAGGCTGGGACTAGGTGGCAATGCTCCAGTTTCCAT...ACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTCACGGACTGAGACTGTaGAGGGATGGAAACTGGAGC +
Preference number: 5 (lower is better)
Translates to: ESRYISYVAGLFCKIVQGHGLRL*RDGNWS
Trigger: GCTCCAGTTTCCATCCCTCAACAGTCTCAGTCCGTG...ACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCTTTTGGTTGTGGCTTaGGAGGAACTGGGGCATTAT +
Preference number: 5 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYLLVVA*EELGHY
Trigger: ATAATGCCCCAGTTCCTCCAAAGCCACAACCAAAAG...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp CAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAATTCCTGAACTTTTGGTaGTGGCTTTGGAGGAACTGG +
Preference number: 5 (lower is better)
Translates to: QLTGFSHFITESTREESEFLNFW*WLWRNW
Trigger: CCAGTTCCTCCAAAGCCACAACCAAAAGTTCAGGAA...TTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTGCCGAGAAGGTGCGTTaGTCTTGTCCTGGCCATTCT +
Preference number: 5 (lower is better)
Translates to: ESRYISYVAGLFCKIVQGAEKVR*SCPGHS
Trigger: AGAATGGCCAGGACAAGACAAACGCACCTTCTCGGC...ACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATGCCGAGAAGGTGCGTTaGTCTTGTCCTGGCCATTCT +
Preference number: 5 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNAEKVR*SCPGHS
Trigger: AGAATGGCCAGGACAAGACAAACGCACCTTCTCGGC...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTACACACTTCTTCCTCTaGTTACTGAAATGGGAGGCA +
Preference number: 5 (lower is better)
Translates to: ATSLLVFHTSSPSLPEKSTHFFL*LLKWEA
Trigger: TGCCTCCCATTTCAGTAACAAGAGGAAGAAGTGTGT...ACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GGTCCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTCACTGTGACTGGTCCTaGGACCAAAACCCTTCAACT +
Preference number: 5 (lower is better)
Translates to: GPYYRRVKLLLGKLDIAFHCDWS*DQNPST
Trigger: AGTTGAAGGGTTTTGGTCCAAGGACCAGTCACAGTG...AAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 90 bp CTCTCAGATGGTGAAGCACCATCTTTCCACTCAACTACATCATCTTaGTCTACCTCACTATCAGAGGCATCATGCATTAATTTGGCTGGT +
Preference number: 5 (lower is better)
Translates to: LSDGEAPSFHSTTSS*STSLSEASCINLAG
Trigger: ACCAGCCAAATTAATGCATGATGCCTCTGATAGTGAGGTAGACCAAGATGATGTAGTTGAGTGGAAAGATGGTGCTTCACCATCTGAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GGTCCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTACGGCTTGCTCTACATaGTCAGCCTGCTTAGGTTTA +
Preference number: 5 (lower is better)
Translates to: GPYYRRVKLLLGKLDIAFTACST*SACLGL
Trigger: TAAACCTAAGCAGGCTGACAATGTAGAGCAAGCCGT...AAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGGACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp CCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCGGGTGCTGCCACGTGTaGAAAATGTTCCCTGTAGAT +
Preference number: 5 (lower is better)
Translates to: PYYRRVKLLLGKLDIAFIGCCHV*KMFPVD
Trigger: ATCTACAGGGAACATTTTCAACACGTGGCAGCACCC...GATAAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTATCTTCTCTACATCATaGAAGGTGGAACGGCAATAC +
Preference number: 5 (lower is better)
Translates to: ATSLLVFHTSSPSLPEKSIFSTS*KVERQY
Trigger: GTATTGCCGTTCCACCTTCAATGATGTAGAGAAGAT...ACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GGTCCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTTTCCTGAACTTTTGGTaGTGGCTTTGGAGGAACTGG +
Preference number: 5 (lower is better)
Translates to: GPYYRRVKLLLGKLDIAFFLNFW*WLWRNW
Trigger: CCAGTTCCTCCAAAGCCACAACCAAAAGTTCAGGAA...AAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGGACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp CCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTTATGAGCAGCACACCAGGCTaGTACTTTTCACAGTCGCGG +
Preference number: 5 (lower is better)
Translates to: PDIYLMLLASFARLYKVMSSTPG*YFSQSR
Trigger: CCGCGACTGTGAAAAGTACAAGCCTGGTGTGCTGCT...CATAACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTCAACTACATCATCTaGGTCTACCTCACTATCAGA +
Preference number: 5 (lower is better)
Translates to: ATSLLVFHTSSPSLPEKSLNYII*VYLTIR
Trigger: TCTGATAGTGAGGTAGACCAAGATGATGTAGTTGAG...ACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 90 bp CAATATGAACCATTCGCATGTGTGCTGCCATCTTCTCTACATCATTaGAGGTGGAACGGCAATACGGACAAGACAGACCATGAATTAACA +
Preference number: 5 (lower is better)
Translates to: QYEPFACVLPSSLHH*RWNGNTDKTDHELT
Trigger: TGTTAATTCATGGTCTGTCTTGTCCGTATTGCCGTTCCACCTTCAATGATGTAGAGAAGATGGCAGCACACATGCGAATGGTTCATATTG
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GGTCCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTAGGCAGAGAAGAATTTaGAGGAAAACGGACAAGCAC +
Preference number: 5 (lower is better)
Translates to: GPYYRRVKLLLGKLDIAFRQRRI*RKTDKH
Trigger: GTGCTTGTCCGTTTTCCTCAAAATTCTTCTCTGCCT...AAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGGACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp TTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACAAAGATCAACCAATTTTTCTCCTGCTTTaGCTATGTAGGGTGCTGCCA +
Preference number: 5 (lower is better)
Translates to: FHTSSPSLPEKSLNKDQPIFLLL*LCRVLP
Trigger: TGGCAGCACCCTACATAGCAAAAGCAGGAGAAAAAT...TGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GGTCCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATTTTTCTCCTGCTTTaGCTATGTAGGGTGCTGCCA +
Preference number: 5 (lower is better)
Translates to: GPYYRRVKLLLGKLDIAFIFLLL*LCRVLP
Trigger: TGGCAGCACCCTACATAGCAAAAGCAGGAGAAAAAT...AAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGGACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCAGTTGGGCTTTGGTATaGACAATCGGTTTACCATCT +
Preference number: 5 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFSWALV*TIGLPS
Trigger: AGATGGTAAACCGATTGTCAATACCAAAGCCCAACT...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp TATGTGCAAAAACTAAGTCTGTCCAAAGGTCCATACTATCGCAGGGTCAAGCTTGACTCCATAGTTGTTTaGCTGCAGGTGAACATTGGA +
Preference number: 5 (lower is better)
Translates to: YVQKLSLSKGPYYRRVKLDSIVV*LQVNIG
Trigger: TCCAATGTTCACCTGCAGCAAAACAACTATGGAGTC...AAGCTTGACCCTGCGATAGTATGGACCTTTGGACAGACTTAGTTTTTGCACATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp AGAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGACCTCCCATTCCCACTaGGAAGTAACTGTTTCACGG +
Preference number: 5 (lower is better)
Translates to: RVQIYILCCWPLLQDCTRTSHSH*EVTVSR
Trigger: CCGTGAAACAGTTACTTCCAAGTGGGAATGGGAGGT...CCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp TATGTGCAAAAACTAAGTCTGTCCAAAGGTCCATACTATCGCAGGGTCAAGCTTACACACTTCTTCCTCTaGTTACTGAAATGGGAGGCA +
Preference number: 5 (lower is better)
Translates to: YVQKLSLSKGPYYRRVKLTHFFL*LLKWEA
Trigger: TGCCTCCCATTTCAGTAACAAGAGGAAGAAGTGTGT...AAGCTTGACCCTGCGATAGTATGGACCTTTGGACAGACTTAGTTTTTGCACATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACACAGTCTTGCTAGCATaGACTCTTGAGTCTTTCTCA +
Preference number: 5 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYTVLLA*TLESFS
Trigger: TGAGAAAGACTCAAGAGTCAATGCTAGCAAGACTGT...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATCACTGTGACTGGTCCTaGGACCAAAACCCTTCAACT +
Preference number: 5 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNHCDWS*DQNPST
Trigger: AGTTGAAGGGTTTTGGTCCAAGGACCAGTCACAGTG...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 90 bp AAGCTCAAAGTAGAATCCGTTTTAGGCCCCATCTCTTCATCAATATaGACCATTCGCATGTGTGCTGCCATCTTCTCTACATCATTGAAG +
Preference number: 5 (lower is better)
Translates to: KLKVESVLGPISSSI*TIRMCAAIFSTSLK
Trigger: CTTCAATGATGTAGAGAAGATGGCAGCACACATGCGAATGGTTCATATTGATGAAGAGATGGGGCCTAAAACGGATTCTACTTTGAGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp AGAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGACGGCTTGCTCTACATaGTCAGCCTGCTTAGGTTTA +
Preference number: 5 (lower is better)
Translates to: RVQIYILCCWPLLQDCTRTACST*SACLGL
Trigger: TAAACCTAAGCAGGCTGACAATGTAGAGCAAGCCGT...CCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp CCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTTATGGCAGTAATACACGGCTaGCTCTACATTGTCAGCCTG +
Preference number: 5 (lower is better)
Translates to: PDIYLMLLASFARLYKVMAVIHG*LYIVSL
Trigger: CAGGCTGACAATGTAGAGCAAGCCGTGTATTACTGC...CATAACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp TGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCATCACCGAGTCTACCCCGTTGAATTTAAGTaGGGCTTTGGTATTGACAAT +
Preference number: 5 (lower is better)
Translates to: CIHELPAYWFFTLHHRVYPVEFK*GFGIDN
Trigger: ATTGTCAATACCAAAGCCCAACTTAAATTCAACGGG...GTAGACTCGGTGATGAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCACATTGGACATCATGTaGACTCCCGTTGAATTTAAG +
Preference number: 5 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFTLDIM*TPVEFK
Trigger: CTTAAATTCAACGGGAGTCAACATGATGTCCAATGT...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp CCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTTATGACCTCCCATTCCCACTaGGAAGTAACTGTTTCACGG +
Preference number: 5 (lower is better)
Translates to: PDIYLMLLASFARLYKVMTSHSH*EVTVSR
Trigger: CCGTGAAACAGTTACTTCCAAGTGGGAATGGGAGGT...CATAACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTGGTGTGACTGCCCTGTaGCAATGTCAAATCAAAGCT +
Preference number: 5 (lower is better)
Translates to: ESRYISYVAGLFCKIVQGGVTAL*QCQIKA
Trigger: AGCTTTGATTTGACATTGCAACAGGGCAGTCACACC...ACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATGTTGAGGCTGTCATGTaGCTAGTATACACACCAAGG +
Preference number: 5 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNVEAVM*LVYTPR
Trigger: CCTTGGTGTGTATACTAGCAACATGACAGCCTCAAC...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GGTCCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTGCATCATGCATTAATTaGGCTGGTTCCTCAGTCAAA +
Preference number: 5 (lower is better)
Translates to: GPYYRRVKLLLGKLDIAFASCIN*AGSSVK
Trigger: TTTGACTGAGGAACCAGCCAAATTAATGCATGATGC...AAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGGACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATCGTCCTCACTGTCAATaGTGCTATTCTGCCACTCAA +
Preference number: 5 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNRPHCQ*CYSATQ
Trigger: TTGAGTGGCAGAATAGCACAATTGACAGTGAGGACG...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 90 bp TTGTCAACAGTCTTGCTAGCATTGACTCTTGAGTCTTTCTCATCGTaGTTTTCAAACAGCCACTCAGCATCAAAATCCATCTCGTGTTTG +
Preference number: 5 (lower is better)
Translates to: LSTVLLALTLESFSS*FSNSHSASKSISCL
Trigger: CAAACACGAGATGGATTTTGATGCTGAGTGGCTGTTTGAAAATCACGATGAGAAAGACTCAAGAGTCAATGCTAGCAAGACTGTTGACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 90 bp CCCAAGGTTATGCTTTTTGTCAACAGTCTTGCTAGCATTGACTCTTaGGTCTTTCTCATCGTGATTTTCAAACAGCCACTCAGCATCAAA +
Preference number: 5 (lower is better)
Translates to: PKVMLFVNSLASIDS*VFLIVIFKQPLSIK
Trigger: TTTGATGCTGAGTGGCTGTTTGAAAATCACGATGAGAAAGACTCAAGAGTCAATGCTAGCAAGACTGTTGACAAAAAGCATAACCTTGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp TATGTGCAAAAACTAAGTCTGTCCAAAGGTCCATACTATCGCAGGGTCAAGCTTTGCAGCAAAAAGGTTTaGTCCGATAGTCCTGATTTT +
Preference number: 5 (lower is better)
Translates to: YVQKLSLSKGPYYRRVKLCSKKV*SDSPDF
Trigger: AAAATCAGGACTATCGGACAAAACCTTTTTGCTGCA...AAGCTTGACCCTGCGATAGTATGGACCTTTGGACAGACTTAGTTTTTGCACATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp TTTCACACTTCATCACCGAGTCTACCAGAGAAGAGTCTGAACAAAGATCAACCACCCGTTGAATTTAAGTaGGGCTTTGGTATTGACAAT +
Preference number: 5 (lower is better)
Translates to: FHTSSPSLPEKSLNKDQPPVEFK*GFGIDN
Trigger: ATTGTCAATACCAAAGCCCAACTTAAATTCAACGGG...TGGTTGATCTTTGTTCAGACTCTTCTCTGGTAGACTCGGTGATGAAGTGTGAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp ACTGTGCTTGTTGCTCTGATACAACACTCTTACAGGTCTAAAAGGTGTCAAAATGACTCCATAGTTGTTTaGCTGCAGGTGAACATTGGA +
Preference number: 5 (lower is better)
Translates to: TVLVALIQHSYRSKRCQNDSIVV*LQVNIG
Trigger: TCCAATGTTCACCTGCAGCAAAACAACTATGGAGTC...ATTTTGACACCTTTTAGACCTGTAAGAGTGTTGTATCAGAGCAACAAGCACAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp TACTTCTCCCTGTGTGCATTCATGAGCTACCAGCTTACTGGTTTTTCACACTTCAAAGCTCGTTACAGATaGTACAGATTTTCCACTTCT +
Preference number: 5 (lower is better)
Translates to: YFSLCAFMSYQLTGFSHFKARYR*YRFSTS
Trigger: AGAAGTGGAAAATCTGTACAATCTGTAACGAGCTTT...GAAGTGTGAAAAACCAGTAAGCTGGTAGCTCATGAATGCACACAGGGAGAAGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp CCATACTATCGCAGGGTCAAGCTTCTGCTAGGTAAACTAGATATAGCATTTATCACAGTCTTGCTAGCATaGACTCTTGAGTCTTTCTCA +
Preference number: 5 (lower is better)
Translates to: PYYRRVKLLLGKLDIAFITVLLA*TLESFS
Trigger: TGAGAAAGACTCAAGAGTCAATGCTAGCAAGACTGT...GATAAATGCTATATCTAGTTTACCTAGCAGAAGCTTGACCCTGCGATAGTATGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 90 bp CACTCAACTACATCATCTTGGTCTACCTCACTATCAGAGGCATCATaGATTAATTTGGCTGGTTCCTCAGTCAAATGGATAGTTTCATAT +
Preference number: 5 (lower is better)
Translates to: HSTTSSWSTSLSEAS*INLAGSSVKWIVSY
Trigger: ATATGAAACTATCCATTTGACTGAGGAACCAGCCAAATTAATGCATGATGCCTCTGATAGTGAGGTAGACCAAGATGATGTAGTTGAGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp AGAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGCTTAAACTGCCAAGATaGTTGACAGGAAGTTGGAAC +
Preference number: 5 (lower is better)
Translates to: RVQIYILCCWPLLQDCTRLKLPR*LTGSWN
Trigger: GTTCCAACTTCCTGTCAACAATCTTGGCAGTTTAAG...CCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTAGTTGGGCTTTGGTATaGACAATCGGTTTACCATCT +
Preference number: 5 (lower is better)
Translates to: ESRYISYVAGLFCKIVQGSWALV*TIGLPS
Trigger: AGATGGTAAACCGATTGTCAATACCAAAGCCCAACT...ACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp GAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTGCATCATGCATTAATTaGGCTGGTTCCTCAGTCAAA +
Preference number: 5 (lower is better)
Translates to: ESRYISYVAGLFCKIVQGASCIN*AGSSVK
Trigger: TTTGACTGAGGAACCAGCCAAATTAATGCATGATGC...ACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 90 bp ACTCCCGCTTCCATTGGATTCTTCTTCCAAATGTTCAAAACTATCTaGGAAGCTATCATCTTCTTTCCCAAGGTTATGCTTTTTGTCAAC +
Preference number: 5 (lower is better)
Translates to: TPASIGFFFQMFKTI*EAIIFFPKVMLFVN
Trigger: GTTGACAAAAAGCATAACCTTGGGAAAGAAGATGATAGCTTCTCAGATAGTTTTGAACATTTGGAAGAAGAATCCAATGGAAGCGGGAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp CCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTTATGATCTTCTCTACATCATaGAAGGTGGAACGGCAATAC +
Preference number: 5 (lower is better)
Translates to: PDIYLMLLASFARLYKVMIFSTS*KVERQY
Trigger: GTATTGCCGTTCCACCTTCAATGATGTAGAGAAGAT...CATAACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 90 bp TGTTCAAAACTATCTGAGAAGCTATCATCTTCTTTCCCAAGGTTATaGTTTTTGTCAACAGTCTTGCTAGCATTGACTCTTGAGTCTTTC +
Preference number: 5 (lower is better)
Translates to: CSKLSEKLSSSFPRL*FLSTVLLALTLESF
Trigger: GAAAGACTCAAGAGTCAATGCTAGCAAGACTGTTGACAAAAAGCATAACCTTGGGAAAGAAGATGATAGCTTCTCAGATAGTTTTGAACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp AGAGTCCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGAAAGCTCGTTACAGATaGTACAGATTTTCCACTTCT +
Preference number: 5 (lower is better)
Translates to: RVQIYILCCWPLLQDCTRKARYR*YRFSTS
Trigger: AGAAGTGGAAAATCTGTACAATCTGTAACGAGCTTT...CCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGGACTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS-3UTR CAA 90 bp CCAGATATATATCTTATGTTGCTGGCCTCTTTTGCAAGATTGTACAAGGTTATGTGGGTCCTTTTAGTATaGAAAAGCAAAGAGGGCAAA +
Preference number: 5 (lower is better)
Translates to: PDIYLMLLASFARLYKVMWVLLV*KSKEGK
Trigger: TTTGCCCTCTTTGCTTTTCAATACTAAAAGGACCCA...CATAACCTTGTACAATCTTGCAAAAGAGGCCAGCAACATAAGATATATATCTGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 72 bp AGGGAGACTTCACTTGGCCTGGGGGTAGAGAGGTGTTaGCAGTCTGCAGGGAGTACCTGGCTGCTGCTGGGG +
Preference number: 6 (lower is better)
Translates to: RETSLGLGVERC*QSAGSTWLLLG
Trigger: CCCCAGCAGCAGCCAGGTACTCCCTGCAGACTGCCAACACCTCTCTACCCCCAGGCCAAGTGAAGTCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 72 bp AGGGGCCAGGCCTGGAGACTGATTGAGCCGAGAAGGTaGGTTTGTCTTGTCCTGGCCATTCTGGGTTTTTCC +
Preference number: 6 (lower is better)
Translates to: RGQAWRLIEPRR*VCLVLAILGFS
Trigger: GGAAAAACCCAGAATGGCCAGGACAAGACAAACGCACCTTCTCGGCTCAATCAGTCTCCAGGCCTGGCCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 90 bp AGCAAGGGAGCTGATTCGTGGTGGGAGTCCCATGCCCTTTTTGTCTaGAGGTTTGGGAGCTATCAGCATCAAGGGCTTGGCTCGGGGAAC +
Preference number: 6 (lower is better)
Translates to: SKGADSWWESHALFV*RFGSYQHQGLGSGN
Trigger: GTTCCCCGAGCCAAGCCCTTGATGCTGATAGCTCCCAAACCTCAAGACAAAAAGGGCATGGGACTCCCACCACGAATCAGCTCCCTTGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 72 bp TTGTACAGATTTTCCACTTCTGAGTGGCACAGTGGTTaGTTGGAGGAGGGCCTGTGGCGGCTGGTGGAGGTT +
Preference number: 6 (lower is better)
Translates to: LYRFSTSEWHSG*LEEGLWRLVEV
Trigger: AACCTCCACCAGCCGCCACAGGCCCTCCTCCAAGCAACCACTGTGCCACTCAGAAGTGGAAAATCTGTACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 72 bp ACAGATTTTCCACTTCTGAGTGGCACAGTGGTTGCTTaGAGGAGGGCCTGTGGCGGCTGGTGGAGGTTTAGA +
Preference number: 6 (lower is better)
Translates to: TDFPLLSGTVVA*RRACGGWWRFR
Trigger: TCTAAACCTCCACCAGCCGCCACAGGCCCTCCTCCAAGCAACCACTGTGCCACTCAGAAGTGGAAAATCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 72 bp AGCTGCCATGCATGGGATCAGCAACTCCGTCAGTCATaGTGTCAAACTGCTCCCCGTCCTCACTGTCAATTG +
Preference number: 6 (lower is better)
Translates to: SCHAWDQQLRQS*CQTAPRPHCQL
Trigger: CAATTGACAGTGAGGACGGGGAGCAGTTTGACAGCATGACTGACGGAGTTGCTGATCCCATGCATGGCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 72 bp CCGGACATTTCCAGAAGCAAGGGAGCTGATTCGTGGTaGGAGTCCCATGCCCTTTTTGTCTTGAGGTTTGGG +
Preference number: 6 (lower is better)
Translates to: PDISRSKGADSW*ESHALFVLRFG
Trigger: CCCAAACCTCAAGACAAAAAGGGCATGGGACTCCCACCACGAATCAGCTCCCTTGCTTCTGGAAATGTCCGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 72 bp GCTCGTTACAGATTGTACAGATTTTCCACTTCTGAGTaGCACAGTGGTTGCTTGGAGGAGGGCCTGTGGCGG +
Preference number: 6 (lower is better)
Translates to: ARYRLYRFSTSE*HSGCLEEGLWR
Trigger: CCGCCACAGGCCCTCCTCCAAGCAACCACTGTGCCACTCAGAAGTGGAAAATCTGTACAATCTGTAACGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 72 bp AGCCGAGAAGGTGCGTTTGTCTTGTCCTGGCCATTCTaGGTTTTTCCAACACCCCTGCAGTGGACTAGATGC +
Preference number: 6 (lower is better)
Translates to: SREGAFVLSWPF*VFPTPLQWTRC
Trigger: GCATCTAGTCCACTGCAGGGGTGTTGGAAAAACCCAGAATGGCCAGGACAAGACAAACGCACCTTCTCGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 72 bp GCTGATTCGTGGTGGGAGTCCCATGCCCTTTTTGTCTaGAGGTTTGGGAGCTATCAGCATCAAGGGCTTGGC +
Preference number: 6 (lower is better)
Translates to: ADSWWESHALFV*RFGSYQHQGLG
Trigger: GCCAAGCCCTTGATGCTGATAGCTCCCAAACCTCAAGACAAAAAGGGCATGGGACTCCCACCACGAATCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 90 bp GGGGCCTCTGCTCAGCACCTAGCCCAAAAGACCTCCCATTCCCACTaGGAAGTAACTGTTTCACGGACTGAGACTGTTGAGGGATGGAAA +
Preference number: 6 (lower is better)
Translates to: GASAQHLAQKTSHSH*EVTVSRTETVEGWK
Trigger: TTTCCATCCCTCAACAGTCTCAGTCCGTGAAACAGTTACTTCCAAGTGGGAATGGGAGGTCTTTTGGGCTAGGTGCTGAGCAGAGGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 72 bp ATGGCAACGACCGGACATTTCCAGAAGCAAGGGAGCTaGTTCGTGGTGGGAGTCCCATGCCCTTTTTGTCTT +
Preference number: 6 (lower is better)
Translates to: MATTGHFQKQGS*FVVGVPCPFCL
Trigger: AAGACAAAAAGGGCATGGGACTCCCACCACGAATCAGCTCCCTTGCTTCTGGAAATGTCCGGTCGTTGCCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 72 bp GGCTGCTCAGCTTCACTCCAGTTAAGCTGCCATGCATaGGATCAGCAACTCCGTCAGTCATGCTGTCAAACT +
Preference number: 6 (lower is better)
Translates to: GCSASLQLSCHA*DQQLRQSCCQT
Trigger: AGTTTGACAGCATGACTGACGGAGTTGCTGATCCCATGCATGGCAGCTTAACTGGAGTGAAGCTGAGCAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 90 bp CTCCGTCAGTCATGCTGTCAAACTGCTCCCCGTCCTCACTGTCAATaGTGCTATTCTGCCACTCAATCTGTGGGTTTGGTAAGCGCTCTG +
Preference number: 6 (lower is better)
Translates to: LRQSCCQTAPRPHCQ*CYSATQSVGLVSAL
Trigger: CAGAGCGCTTACCAAACCCACAGATTGAGTGGCAGAATAGCACAATTGACAGTGAGGACGGGGAGCAGTTTGACAGCATGACTGACGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 72 bp TCGGGCATTTGTGCCCAGGGAGACTGCACCATTGAGTaGTTTTTCTCCTGCTTTTGCTATGTAGGGTGCTGC +
Preference number: 6 (lower is better)
Translates to: SGICAQGDCTIE*FFSCFCYVGCC
Trigger: GCAGCACCCTACATAGCAAAAGCAGGAGAAAAATCACTCAATGGTGCAGTCTCCCTGGGCACAAATGCCCGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 72 bp CCTCTCGGGCATTTGTGCCCAGGGAGACTGCACCATTaGGTGATTTTTCTCCTGCTTTTGCTATGTAGGGTG +
Preference number: 6 (lower is better)
Translates to: PLGHLCPGRLHH*VIFLLLLLCRV
Trigger: CACCCTACATAGCAAAAGCAGGAGAAAAATCACTCAATGGTGCAGTCTCCCTGGGCACAAATGCCCGAGAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 72 bp AACTGCTCCCCGTCCTCACTGTCAATTGTGCTATTCTaGCACTCAATCTGTGGGTTTGGTAAGCGCTCTGCA +
Preference number: 6 (lower is better)
Translates to: NCSPSSLSIVLF*HSICGFGKRSA
Trigger: TGCAGAGCGCTTACCAAACCCACAGATTGAGTGGCAGAATAGCACAATTGACAGTGAGGACGGGGAGCAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 72 bp GAAGTAACTGTTTCACGGACTGAGACTGTTGAGGGATaGAAACTGGAGCATTGCCACCTAGTCCCAGCCTCA +
Preference number: 6 (lower is better)
Translates to: EVTVSRTETVEG*KLEHCHLVPAS
Trigger: TGAGGCTGGGACTAGGTGGCAATGCTCCAGTTTCCATCCCTCAACAGTCTCAGTCCGTGAAACAGTTACTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 72 bp CCACGTGTTGAAAATGTTCCCTGTAGATGTGCTTCCTaGCGATCTCGTAGAGAGGGTCTCGGTAAGTGCACT +
Preference number: 6 (lower is better)
Translates to: PRVENVPCRCAS*RSRREGLGKCT
Trigger: AGTGCACTTACCGAGACCCTCTCTACGAGATCGTCAGGAAGCACATCTACAGGGAACATTTTCAACACGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 72 bp CTGACTGGCCAACACCATAGCTCTGGCCCACAGATTTaGCTCCATAGTTGTTTTGCTGCAGGTGAACATTGG +
Preference number: 6 (lower is better)
Translates to: LTGQHHSSGPQI*LHSCFAAGEHW
Trigger: CCAATGTTCACCTGCAGCAAAACAACTATGGAGTCAAATCTGTGGGCCAGAGCTATGGTGTTGGCCAGTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 72 bp CGATCTCGTAGAGAGGGTCTCGGTAAGTGCACTTCTTaGAGTAATACACGGCTTGCTCTACATTGTCAGCCT +
Preference number: 6 (lower is better)
Translates to: RSRREGLGKCTS*SNTRLALHCQP
Trigger: AGGCTGACAATGTAGAGCAAGCCGTGTATTACTGCAAGAAGTGCACTTACCGAGACCCTCTCTACGAGATCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 72 bp TGTCTTGAGGTTTGGGAGCTATCAGCATCAAGGGCTTaGCTCGGGGAACTACAACATTTGTGTGTCCGATCA +
Preference number: 6 (lower is better)
Translates to: CLEVWELSASRA*LGELQHLCVRS
Trigger: TGATCGGACACACAAATGTTGTAGTTCCCCGAGCCAAGCCCTTGATGCTGATAGCTCCCAAACCTCAAGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 72 bp TTGGCAGCTGGCTTACTGCTCCTTGCATCTTCACTCTaGGAAGACTCATCAGACCAGGTTCCTGGTTTCATT +
Preference number: 6 (lower is better)
Translates to: LAAGLLLLASSL*EDSSDQVPGFI
Trigger: AATGAAACCAGGAACCTGGTCTGATGAGTCTTCCCAGAGTGAAGATGCAAGGAGCAGTAAGCCAGCTGCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 72 bp AAAAGCTCGTTACAGATTGTACAGATTTTCCACTTCTaGGTGGCACAGTGGTTGCTTGGAGGAGGGCCTGTG +
Preference number: 6 (lower is better)
Translates to: KSSLQIVQIFHF*VAQWLLGGGPV
Trigger: CACAGGCCCTCCTCCAAGCAACCACTGTGCCACTCAGAAGTGGAAAATCTGTACAATCTGTAACGAGCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 72 bp CCATTCGCATGTGTGCTGCCATCTTCTCTACATCATTaGAGGTGGAACGGCAATACGGACAAGACAGACCAT +
Preference number: 6 (lower is better)
Translates to: PFACVLPSSLHH*RWNGNTDKTDH
Trigger: ATGGTCTGTCTTGTCCGTATTGCCGTTCCACCTTCAATGATGTAGAGAAGATGGCAGCACACATGCGAATGG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 72 bp TTCTGGGTTTTTCCAACACCCCTGCAGTGGACTAGATaGAGAGTGATGGTTGAGGCTGTCATGTTGCTAGTA +
Preference number: 6 (lower is better)
Translates to: FWVFPTPLQWTR*RVMVEAVMLLV
Trigger: TACTAGCAACATGACAGCCTCAACCATCACTCTGCATCTAGTCCACTGCAGGGGTGTTGGAAAAACCCAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 72 bp CCCTCAGGTTGTATGTGGTCACCAGGAGATGAATGTTaGTGTGACTGCCCTGTTGCAATGTCAAATCAAAGC +
Preference number: 6 (lower is better)
Translates to: PSGCMWSPGDEC*CDCPVAMSNQS
Trigger: GCTTTGATTTGACATTGCAACAGGGCAGTCACACCAACATTCATCTCCTGGTGACCACATACAACCTGAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 72 bp CAGTCGCGGACACACTTCTTCCTCTTGTTACTGAAATaGGAGGCAATGTCACTCTTCCATAGCCATAGACTG +
Preference number: 6 (lower is better)
Translates to: QSRTHFFLLLLK*EAMSLFHSHRL
Trigger: CAGTCTATGGCTATGGAAGAGTGACATTGCCTCCCATTTCAGTAACAAGAGGAAGAAGTGTGTCCGCGACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 72 bp GTCTCGGTAAGTGCACTTCTTGCAGTAATACACGGCTaGCTCTACATTGTCAGCCTGCTTAGGTTTAAGGCC +
Preference number: 6 (lower is better)
Translates to: VSVSALLAVIHG*LYIVSLLRFKA
Trigger: GGCCTTAAACCTAAGCAGGCTGACAATGTAGAGCAAGCCGTGTATTACTGCAAGAAGTGCACTTACCGAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 72 bp ACCATTCGCATGTGTGCTGCCATCTTCTCTACATCATaGAAGGTGGAACGGCAATACGGACAAGACAGACCA +
Preference number: 6 (lower is better)
Translates to: TIRMCAAIFSTS*KVERQYGQDRP
Trigger: TGGTCTGTCTTGTCCGTATTGCCGTTCCACCTTCAATGATGTAGAGAAGATGGCAGCACACATGCGAATGGT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 90 bp CGTCCTCACTGTCAATTGTGCTATTCTGCCACTCAATCTGTGGGTTaGGTAAGCGCTCTGCATTCTCAGATGCATTTTCCCACTGTGACT +
Preference number: 6 (lower is better)
Translates to: RPHCQLCYSATQSVG*VSALHSQMHFPTVT
Trigger: AGTCACAGTGGGAAAATGCATCTGAGAATGCAGAGCGCTTACCAAACCCACAGATTGAGTGGCAGAATAGCACAATTGACAGTGAGGACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 90 bp GTAGAGAGGGTCTCGGTAAGTGCACTTCTTGCAGTAATACACGGCTaGCTCTACATTGTCAGCCTGCTTAGGTTTAAGGCCATCGTTTTT +
Preference number: 6 (lower is better)
Translates to: VERVSVSALLAVIHG*LYIVSLLRFKAIVF
Trigger: AAAAACGATGGCCTTAAACCTAAGCAGGCTGACAATGTAGAGCAAGCCGTGTATTACTGCAAGAAGTGCACTTACCGAGACCCTCTCTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 90 bp ACACCAGGCTTGTACTTTTCACAGTCGCGGACACACTTCTTCCTCTaGTTACTGAAATGGGAGGCAATGTCACTCTTCCATAGCCATAGA +
Preference number: 6 (lower is better)
Translates to: TPGLYFSQSRTHFFL*LLKWEAMSLFHSHR
Trigger: TCTATGGCTATGGAAGAGTGACATTGCCTCCCATTTCAGTAACAAGAGGAAGAAGTGTGTCCGCGACTGTGAAAAGTACAAGCCTGGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 72 bp AAGTTGGGCTTTGGTATTGACAATCGGTTTACCATCTaGTGTGATGGCAACGACCGGACATTTCCAGAAGCA +
Preference number: 6 (lower is better)
Translates to: KLGFGIDNRFTI*CDGNDRTFPEA
Trigger: TGCTTCTGGAAATGTCCGGTCGTTGCCATCACAGCAGATGGTAAACCGATTGTCAATACCAAAGCCCAACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 72 bp AATGGGAGGCAATGTCACTCTTCCATAGCCATAGACTaGCAGCTAACTTCTCAATTTCTCTCCTGGTGGGAT +
Preference number: 6 (lower is better)
Translates to: NGRQCHSSIAID*QLTSQFLSWWD
Trigger: ATCCCACCAGGAGAGAAATTGAGAAGTTAGCTGCCAGTCTATGGCTATGGAAGAGTGACATTGCCTCCCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 72 bp TTCTCCTGCTTTTGCTATGTAGGGTGCTGCCACGTGTaGAAAATGTTCCCTGTAGATGTGCTTCCTGACGAT +
Preference number: 6 (lower is better)
Translates to: FSCFCYVGCCHV*KMFPVDVLPDD
Trigger: ATCGTCAGGAAGCACATCTACAGGGAACATTTTCAACACGTGGCAGCACCCTACATAGCAAAAGCAGGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 90 bp CGAAGTGAACGCTATAGACATTCTCAGGGAAAAGCTCGTTACAGATaGTACAGATTTTCCACTTCTGAGTGGCACAGTGGTTGCTTGGAG +
Preference number: 6 (lower is better)
Translates to: RSERYRHSQGKARYR*YRFSTSEWHSGCLE
Trigger: CTCCAAGCAACCACTGTGCCACTCAGAAGTGGAAAATCTGTACAATCTGTAACGAGCTTTTCCCTGAGAATGTCTATAGCGTTCACTTCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 90 bp GTTGTATGTGGTCACCAGGAGATGAATGTTGGTGTGACTGCCCTGTaGCAATGTCAAATCAAAGCTCAAAGTAGAATCCGTTTTAGGCCC +
Preference number: 6 (lower is better)
Translates to: VVCGHQEMNVGVTAL*QCQIKAQSRIRFRP
Trigger: GGGCCTAAAACGGATTCTACTTTGAGCTTTGATTTGACATTGCAACAGGGCAGTCACACCAACATTCATCTCCTGGTGACCACATACAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 72 bp CCCCATCTCTTCATCAATATGAACCATTCGCATGTGTaGTGCCATCTTCTCTACATCATTGAAGGTGGAACG +
Preference number: 6 (lower is better)
Translates to: PHLFINMNHSHV*CHLLYIIEGGT
Trigger: CGTTCCACCTTCAATGATGTAGAGAAGATGGCAGCACACATGCGAATGGTTCATATTGATGAAGAGATGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 72 bp ATAGCTCTGGCCCACAGATTTGACTCCATAGTTGTTTaGCTGCAGGTGAACATTGGACATCATGTTGACTCC +
Preference number: 6 (lower is better)
Translates to: IALAHRFDSIVV*LQVNIGHHVDS
Trigger: GGAGTCAACATGATGTCCAATGTTCACCTGCAGCAAAACAACTATGGAGTCAAATCTGTGGGCCAGAGCTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 72 bp GTAGAATCCGTTTTAGGCCCCATCTCTTCATCAATATaGACCATTCGCATGTGTGCTGCCATCTTCTCTACA +
Preference number: 6 (lower is better)
Translates to: VESVLGPISSSI*TIRMCAAIFST
Trigger: TGTAGAGAAGATGGCAGCACACATGCGAATGGTTCATATTGATGAAGAGATGGGGCCTAAAACGGATTCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS TCA 72 bp TCCTGGTTTCATTTCACATGTATTATCCTCAAAGTCTaGGATTTGTTGGGAACCAGGCCCACTCTCAGATGG +
Preference number: 6 (lower is better)
Translates to: SWFHFTCIILKV*DLLGTRPTLRW
Trigger: CCATCTGAGAGTGGGCCTGGTTCCCAACAAATCTCAGACTTTGAGGATAATACATGTGAAATGAAACCAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 72 bp CATCTCTTCATCAATATGAACCATTCGCATGTGTGCTaGCATCTTCTCTACATCATTGAAGGTGGAACGGCA +
Preference number: 6 (lower is better)
Translates to: HLFINMNHSHVC*HLLYIIEGGTA
Trigger: TGCCGTTCCACCTTCAATGATGTAGAGAAGATGGCAGCACACATGCGAATGGTTCATATTGATGAAGAGATG
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 72 bp ATTTCACATGTATTATCCTCAAAGTCTGAGATTTGTTaGGAACCAGGCCCACTCTCAGATGGTGAAGCACCA +
Preference number: 6 (lower is better)
Translates to: ISHVLSSKSEIC*EPGPLSDGEAP
Trigger: TGGTGCTTCACCATCTGAGAGTGGGCCTGGTTCCCAACAAATCTCAGACTTTGAGGATAATACATGTGAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 72 bp CGCTATAGACATTCTCAGGGAAAAGCTCGTTACAGATaGTACAGATTTTCCACTTCTGAGTGGCACAGTGGT +
Preference number: 6 (lower is better)
Translates to: RYRHSQGKARYR*YRFSTSEWHSG
Trigger: ACCACTGTGCCACTCAGAAGTGGAAAATCTGTACAATCTGTAACGAGCTTTTCCCTGAGAATGTCTATAGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 72 bp TGGACTAGATGCAGAGTGATGGTTGAGGCTGTCATGTaGCTAGTATACACACCAAGGCAATGGATACATTTG +
Preference number: 6 (lower is better)
Translates to: WTRCRVMVEAVM*LVYTPRQWIHL
Trigger: CAAATGTATCCATTGCCTTGGTGTGTATACTAGCAACATGACAGCCTCAACCATCACTCTGCATCTAGTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 72 bp TTGTACTTTTCACAGTCGCGGACACACTTCTTCCTCTaGTTACTGAAATGGGAGGCAATGTCACTCTTCCAT +
Preference number: 6 (lower is better)
Translates to: LYFSQSRTHFFL*LLKWEAMSLFH
Trigger: ATGGAAGAGTGACATTGCCTCCCATTTCAGTAACAAGAGGAAGAAGTGTGTCCGCGACTGTGAAAAGTACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 72 bp GGTGAAGCACCATCTTTCCACTCAACTACATCATCTTaGTCTACCTCACTATCAGAGGCATCATGCATTAAT +
Preference number: 6 (lower is better)
Translates to: GEAPSFHSTTSS*STSLSEASCIN
Trigger: ATTAATGCATGATGCCTCTGATAGTGAGGTAGACCAAGATGATGTAGTTGAGTGGAAAGATGGTGCTTCACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 72 bp GATGTGCAAGTGCATCAGATATGGGTCCTTTTAGTATaGAAAAGCAAAGAGGGCAAAGGGTCTTCCCAACAT +
Preference number: 6 (lower is better)
Translates to: DVQVHQIWVLLV*KSKEGKGSSQH
Trigger: ATGTTGGGAAGACCCTTTGCCCTCTTTGCTTTTCAATACTAAAAGGACCCATATCTGATGCACTTGCACATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 72 bp ACATCATCTTGGTCTACCTCACTATCAGAGGCATCATaGATTAATTTGGCTGGTTCCTCAGTCAAATGGATA +
Preference number: 6 (lower is better)
Translates to: TSSWSTSLSEAS*INLAGSSVKWI
Trigger: TATCCATTTGACTGAGGAACCAGCCAAATTAATGCATGATGCCTCTGATAGTGAGGTAGACCAAGATGATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CCA 72 bp CTTCAAAGACAGGGTCAAAAGGACTCCCGCTTCCATTaGATTCTTCTTCCAAATGTTCAAAACTATCTGAGA +
Preference number: 6 (lower is better)
Translates to: LQRQGQKDSRFH*ILLPNVQNYLR
Trigger: TCTCAGATAGTTTTGAACATTTGGAAGAAGAATCCAATGGAAGCGGGAGTCCTTTTGACCCTGTCTTTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 72 bp ACATTGGACATCATGTTGACTCCCGTTGAATTTAAGTaGGGCTTTGGTATTGACAATCGGTTTACCATCTGC +
Preference number: 6 (lower is better)
Translates to: TLDIMLTPVEFK*GFGIDNRFTIC
Trigger: GCAGATGGTAAACCGATTGTCAATACCAAAGCCCAACTTAAATTCAACGGGAGTCAACATGATGTCCAATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 90 bp TTAGGCTCAACTTCAAAGACAGGGTCAAAAGGACTCCCGCTTCCATaGGATTCTTCTTCCAAATGTTCAAAACTATCTGAGAAGCTATCA +
Preference number: 6 (lower is better)
Translates to: LGSTSKTGSKGLPLP*DSSSKCSKLSEKLS
Trigger: TGATAGCTTCTCAGATAGTTTTGAACATTTGGAAGAAGAATCCAATGGAAGCGGGAGTCCTTTTGACCCTGTCTTTGAAGTTGAGCCTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 72 bp GTTTTTATCTTTGAAAGTGCTGAGGCTGCTACTTGGTaGGCTGGAGTTTGGAGCATGAAATATTTTAATGTG +
Preference number: 6 (lower is better)
Translates to: VFIFESAEAATW*AGVWSMKYFNV
Trigger: CACATTAAAATATTTCATGCTCCAAACTCCAGCGCACCAAGTAGCAGCCTCAGCACTTTCAAAGATAAAAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 72 bp TGGTCTACCTCACTATCAGAGGCATCATGCATTAATTaGGCTGGTTCCTCAGTCAAATGGATAGTTTCATAT +
Preference number: 6 (lower is better)
Translates to: WSTSLSEASCIN*AGSSVKWIVSY
Trigger: ATATGAAACTATCCATTTGACTGAGGAACCAGCCAAATTAATGCATGATGCCTCTGATAGTGAGGTAGACCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 90 bp AAACTATCTGAGAAGCTATCATCTTCTTTCCCAAGGTTATGCTTTTaGTCAACAGTCTTGCTAGCATTGACTCTTGAGTCTTTCTCATCG +
Preference number: 6 (lower is better)
Translates to: KLSEKLSSSFPRLCF*STVLLALTLESFSS
Trigger: CGATGAGAAAGACTCAAGAGTCAATGCTAGCAAGACTGTTGACAAAAAGCATAACCTTGGGAAAGAAGATGATAGCTTCTCAGATAGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS CAA 90 bp ACATCATCTTGGTCTACCTCACTATCAGAGGCATCATGCATTAATTaGGCTGGTTCCTCAGTCAAATGGATAGTTTCATATTTTGAACCA +
Preference number: 6 (lower is better)
Translates to: TSSWSTSLSEASCIN*AGSSVKWIVSYFEP
Trigger: TGGTTCAAAATATGAAACTATCCATTTGACTGAGGAACCAGCCAAATTAATGCATGATGCCTCTGATAGTGAGGTAGACCAAGATGATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6
CDS GCA 72 bp CTATCTGAGAAGCTATCATCTTCTTTCCCAAGGTTATaGTTTTTGTCAACAGTCTTGCTAGCATTGACTCTT +
Preference number: 6 (lower is better)
Translates to: LSEKLSSSFPRL*FLSTVLLALTL
Trigger: AAGAGTCAATGCTAGCAAGACTGTTGACAAAAAGCATAACCTTGGGAAAGAAGATGATAGCTTCTCAGATAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057793.11
ENSMUST00000088001.6