Pregenerated sensors for ADIPOQ (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022878Ensembl transcript IDs: ENSMUST00000023593.6, ENSMUST00000171309.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCATGCGAATATTGGTGTCGACTGTTCCATaGTTCTCCTGGTGTATGGGC | + |
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Preference number: 2 (lower is better) Translates to: YSEQKNSMVYFQTVMRILVSTVP*FSWCMG Trigger: GCCCATACACCAGGAGAATCATGGAACAGTCGACAC...CAATATTCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| 3UTR-3UTR TCA 90 bp | ATAGCATGGTCTACTTCCAGACAGTCATGCGAATATTGTGAAGCCCCCATACCACGTTTAATGAACAAGTaGGTACACGTGTGGATAATA | + |
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Preference number: 2 (lower is better) Translates to: IAWSTSRQSCEYCEAPIPRLMNK*VHVWII Trigger: TATTATCCACACGTGTACTCACTTGTTCATTAAACG...TGGTATGGGGGCTTCACAATATTCGCATGACTGTCTGGAAGTAGACCATGCTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| 3UTR-3UTR GCA 90 bp | ATAGCATGGTCTACTTCCAGACAGTCATGCGAATATTGTGAAGCCCCCATACCATTTTCATTCTGTTATTaGTACCATGTAAGAGTCGTG | + |
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Preference number: 2 (lower is better) Translates to: IAWSTSRQSCEYCEAPIPFSFCY*YHVRVV Trigger: CACGACTCTTACATGGTAGCAATAACAGAATGAAAA...TGGTATGGGGGCTTCACAATATTCGCATGACTGTCTGGAAGTAGACCATGCTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| 3UTR TCA 72 bp | AGCATGGTCTACTTCCAGACAGTCATGCGAATATTGTaGAGCCCCCATACCAAATGTGATTTTCATTCTGTT | + |
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Preference number: 3 (lower is better) Translates to: SMVYFQTVMRIL*SPHTKCDFHSV Trigger: AACAGAATGAAAATCACATTTGGTATGGGGGCTTCACAATATTCGCATGACTGTCTGGAAGTAGACCATGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| 3UTR GCA 72 bp | AGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCATaGGAATATTGTGAAGCCCCCATACCAAATGTGATT | + |
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Preference number: 3 (lower is better) Translates to: SRKIAWSTSRQS*EYCEAPIPNVI Trigger: AATCACATTTGGTATGGGGGCTTCACAATATTCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| 3UTR CCA 72 bp | GAACAATATTTGTGTACAGTGAGCAGAAAAATAGCATaGTCTACTTCCAGACAGTCATGCGAATATTGTGAA | + |
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Preference number: 3 (lower is better) Translates to: EQYLCTVSRKIA*STSRQSCEYCE Trigger: TTCACAATATTCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTACACAAATATTGTTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR GCA 90 bp | TTTGTGTACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCATGCGACAGGAGTGCCATCTCTaGCATCACGGCCTGGTGTGC | + |
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Preference number: 4 (lower is better) Translates to: FVYSEQKNSMVYFQTVMRQECHL*HHGLVC Trigger: GCACACCAGGCCGTGATGGCAGAGATGGCACTCCTG...TCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTACACAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR GCA 90 bp | TGTACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCATGCGAATATCAGGCTCTCCTTTCCTaGCAGGGGTTCCGGGGAAGC | + |
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Preference number: 4 (lower is better) Translates to: CTVSRKIAWSTSRQSCEYQALLS*QGFRGS Trigger: GCTTCCCCGGAACCCCTGGCAGGAAAGGAGAGCCTG...ATATTCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR CCA 90 bp | TACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCATGCGAATATTGTCTGCCATCACGGCCTaGTGTGCCATTGTGGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: YSEQKNSMVYFQTVMRILSAITA*CAIVAR Trigger: CCTGGCCACAATGGCACACCAGGCCGTGATGGCAGA...CAATATTCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR CCA 90 bp | ACAATATTTGTGTACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCGTGGCCAGGATGTCCTaGGATGCCTGCCATCCAACC | + |
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Preference number: 4 (lower is better) Translates to: TIFVYSEQKNSMVYFQTVVARMS*DACHPT Trigger: GGTTGGATGGCAGGCATCCCAGGACATCCTGGCCAC...GACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTACACAAATATTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR CCA 90 bp | TACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCATGCGAATATTGACCTGGAGCCAGACTTaGTCTCCCACCTCCAGATGG | + |
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Preference number: 4 (lower is better) Translates to: YSEQKNSMVYFQTVMRILTWSQT*SPTSRW Trigger: CCATCTGGAGGTGGGAGACCAAGTCTGGCTCCAGGT...CAATATTCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR TCA 90 bp | TTTGTGTACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCATGCGAACGTCATCTTCGGCATaGCTGGGCAGGATTAAGAGG | + |
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Preference number: 4 (lower is better) Translates to: FVYSEQKNSMVYFQTVMRTSSSA*LGRIKR Trigger: CCTCTTAATCCTGCCCAGTCATGCCGAAGATGACGT...TCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTACACAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR TCA 90 bp | TTTGTGTACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCATGCGAGATACTGGTCGTAGGTaGAGAGAACGGCCTTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: FVYSEQKNSMVYFQTVMRDTGRR*RERPCP Trigger: AGGACAAGGCCGTTCTCTTCACCTACGACCAGTATC...TCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTACACAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR GCA 90 bp | ACAATATTTGTGTACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCGCCTGCCATCCAACCTaGACAAGTTCCCTTGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: TIFVYSEQKNSMVYFQTVACHPT*TSSLGW Trigger: CCACCCAAGGGAACTTGTGCAGGTTGGATGGCAGGC...GACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTACACAAATATTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| 3UTR CAA 72 bp | GAAGCCCCCATACCAAATGTGATTTTCATTCTGTTATaGCTACCATGTAAGAGTCGTGGAGACCAGGGAGTG | + |
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Preference number: 4 (lower is better) Translates to: EAPIPNVIFILL*LPCKSRGDQGV Trigger: CACTCCCTGGTCTCCACGACTCTTACATGGTAGCAATAACAGAATGAAAATCACATTTGGTATGGGGGCTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR TCA 90 bp | ATAGCATGGTCTACTTCCAGACAGTCATGCGAATATTGTGAAGCCCCCATACCACTTTCATGTACACCGTaGTGTGGTAAGAGAAGTAGT | + |
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Preference number: 4 (lower is better) Translates to: IAWSTSRQSCEYCEAPIPLSCTP*CGKRSS Trigger: ACTACTTCTCTTACCACATCACGGTGTACATGAAAG...TGGTATGGGGGCTTCACAATATTCGCATGACTGTCTGGAAGTAGACCATGCTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR GCA 90 bp | CACTCAGCCTGTGAGAAGAGTAATCACTGTATTTCATATTTACATTATAGGGTTCAGGATGTCCTGGGATaGCTGCCATCCAACCTGCAC | + |
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Preference number: 4 (lower is better) Translates to: HSACEKSNHCISYLHYRVQDVLG*LPSNLH Trigger: GTGCAGGTTGGATGGCAGGCATCCCAGGACATCCTG...AACCCTATAATGTAAATATGAAATACAGTGATTACTCTTCTCACAGGCTGAGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR CCA 90 bp | CACTCAGCCTGTGAGAAGAGTAATCACTGTATTTCATATTTACATTATAGGGTTTCTCCCACCTCCAGATaGAGGAGCACAGAGCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: HSACEKSNHCISYLHYRVSPTSR*RSTEPE Trigger: CTCTGGCTCTGTGCTCCTCCATCTGGAGGTGGGAGA...AACCCTATAATGTAAATATGAAATACAGTGATTACTCTTCTCACAGGCTGAGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR CCA 90 bp | CACTCAGCCTGTGAGAAGAGTAATCACTGTATTTCATATTTACATTATAGGGTTCCATCCCCATACACCTaGAGCCAGACTTGGTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: HSACEKSNHCISYLHYRVPSPYT*SQTWSP Trigger: GGGAGACCAAGTCTGGCTCCAGGTGTATGGGGATGG...AACCCTATAATGTAAATATGAAATACAGTGATTACTCTTCTCACAGGCTGAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR GCA 90 bp | TGGGTCTTTAGACATTCATACACTCAGCCTGTGAGAAGAGTAATCACTGTATTTAGAGTCCCGGAATGTTaGAGTAGAACTTGCCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: WVFRHSYTQPVRRVITVFRVPEC*SRTCQC Trigger: GCACTGGCAAGTTCTACTGCAACATTCCGGGACTCT...AAATACAGTGATTACTCTTCTCACAGGCTGAGTGTATGAATGTCTAAAGACCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR CCA 90 bp | CACTCAGCCTGTGAGAAGAGTAATCACTGTATTTCATATTTACATTATAGGGTTACAAGTTCCCTTGGGTaGAGGGACCAAAGCAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: HSACEKSNHCISYLHYRVTSSLG*RDQSRS Trigger: GCTCCTGCTTTGGTCCCTCCACCCAAGGGAACTTGT...AACCCTATAATGTAAATATGAAATACAGTGATTACTCTTCTCACAGGCTGAGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR CCA 90 bp | CACTCAGCCTGTGAGAAGAGTAATCACTGTATTTCATATTTACATTATAGGGTTCTGCACAAGTTCCCTTaGGTGGAGGGACCAAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: HSACEKSNHCISYLHYRVLHKFP*VEGPKQ Trigger: CTGCTTTGGTCCCTCCACCCAAGGGAACTTGTGCAG...AACCCTATAATGTAAATATGAAATACAGTGATTACTCTTCTCACAGGCTGAGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR TCA 90 bp | CACTCAGCCTGTGAGAAGAGTAATCACTGTATTTCATATTTACATTATAGGGTTCGGCCTTGTCCTTCTTaGAGAGGCTCACCTTCACAT | + |
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Preference number: 4 (lower is better) Translates to: HSACEKSNHCISYLHYRVRPCPS*RGSPSH Trigger: ATGTGAAGGTGAGCCTCTTCAAGAAGGACAAGGCCG...AACCCTATAATGTAAATATGAAATACAGTGATTACTCTTCTCACAGGCTGAGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR GCA 90 bp | TGGGTCTTTAGACATTCATACACTCAGCCTGTGAGAAGAGTAATCACTGTATTTAGAACTTGCCAGTGCTaGCGTCATAATGATTCTGTT | + |
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Preference number: 4 (lower is better) Translates to: WVFRHSYTQPVRRVITVFRTCQC*RHNDSV Trigger: AACAGAATCATTATGACGGCAGCACTGGCAAGTTCT...AAATACAGTGATTACTCTTCTCACAGGCTGAGTGTATGAATGTCTAAAGACCCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS GCA 90 bp | TGCCATCACGGCCTGGTGTGCCATTGTGGCCAGGATGTCCTGGGATaGCTGCCATCCAACCTGCACAAGTTCCCTTGGGTGGAGGGACCA | + |
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Preference number: 5 (lower is better) Translates to: CHHGLVCHCGQDVLG*LPSNLHKFPWVEGP Trigger: TGGTCCCTCCACCCAAGGGAACTTGTGCAGGTTGGATGGCAGGCATCCCAGGACATCCTGGCCACAATGGCACACCAGGCCGTGATGGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023593.6 ENSMUST00000171309.2 |
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| CDS GCA 90 bp | ATCACGGCCTGGTGTGCCATTGTGGCCAGGATGTCCTGGGATGCCTaGCATCCAACCTGCACAAGTTCCCTTGGGTGGAGGGACCAAAGC | + |
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Preference number: 5 (lower is better) Translates to: ITAWCAIVARMSWDA*HPTCTSSLGWRDQS Trigger: GCTTTGGTCCCTCCACCCAAGGGAACTTGTGCAGGTTGGATGGCAGGCATCCCAGGACATCCTGGCCACAATGGCACACCAGGCCGTGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023593.6 ENSMUST00000171309.2 |
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| CDS CCA 90 bp | ATCTCTGCCATCACGGCCTGGTGTGCCATTGTGGCCAGGATGTCCTaGGATGCCTGCCATCCAACCTGCACAAGTTCCCTTGGGTGGAGG | + |
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Preference number: 5 (lower is better) Translates to: ISAITAWCAIVARMS*DACHPTCTSSLGWR Trigger: CCTCCACCCAAGGGAACTTGTGCAGGTTGGATGGCAGGCATCCCAGGACATCCTGGCCACAATGGCACACCAGGCCGTGATGGCAGAGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023593.6 ENSMUST00000171309.2 |
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| CDS CCA 90 bp | TTTCTCTCCCTTCTCTCCAGGAGTGCCATCTCTGCCATCACGGCCTaGTGTGCCATTGTGGCCAGGATGTCCTGGGATGCCTGCCATCCA | + |
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Preference number: 5 (lower is better) Translates to: FLSLLSRSAISAITA*CAIVARMSWDACHP Trigger: TGGATGGCAGGCATCCCAGGACATCCTGGCCACAATGGCACACCAGGCCGTGATGGCAGAGATGGCACTCCTGGAGAGAAGGGAGAGAAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023593.6 ENSMUST00000171309.2 |
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| CDS TCA 90 bp | TACATTGGGAACAGTGACGCGGGTCTCCAGCCCCACACTGAACGCTaGGCGATACACATAAGCGGCTTCTCCAGGCTCTCCTTTCCTGCC | + |
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Preference number: 5 (lower is better) Translates to: YIGNSDAGLQPHTER*AIHISGFSRLSFPA Trigger: GGCAGGAAAGGAGAGCCTGGAGAAGCCGCTTATGTGTATCGCTCAGCGTTCAGTGTGGGGCTGGAGACCCGCGTCACTGTTCCCAATGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023593.6 ENSMUST00000171309.2 |
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| CDS GCA 90 bp | AGGAACAGGAGAGCTTGCAACAGTAGCATCCTGAGCCCTTCACACTaGTGCAGAGAGCAAAATCTGAACACAGCCCAAGTGGGATTCTGC | + |
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Preference number: 5 (lower is better) Translates to: RNRRACNSSILSPSH*CREQNLNTAQVGFC Trigger: GCAGAATCCCACTTGGGCTGTGTTCAGATTTTGCTCTCTGCAGCAGTGTGAAGGGCTCAGGATGCTACTGTTGCAAGCTCTCCTGTTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171309.2 |
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| CDS TCA 90 bp | AAAGCAGGAGCTAGCTCTTCAGTTGTAGTAACGTCATCTTCGGCATaGCTGGGCAGGATTAAGAGGAACAGGAGAGCTTGCAACAGTAGC | + |
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Preference number: 5 (lower is better) Translates to: KAGASSSVVVTSSSA*LGRIKRNRRACNSS Trigger: GCTACTGTTGCAAGCTCTCCTGTTCCTCTTAATCCTGCCCAGTCATGCCGAAGATGACGTTACTACAACTGAAGAGCTAGCTCCTGCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023593.6 ENSMUST00000171309.2 |
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| CDS GCA 90 bp | ATGGTAGAGAAGAAAGCCAGTAAATGTAGAGTCGTTGACGTTATCTaGATAGAGTCCATTGTGGTCCCCATCCCCATACACCTGGAGCCA | + |
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Preference number: 5 (lower is better) Translates to: MVEKKASKCRVVDVI*IESIVVPIPIHLEP Trigger: TGGCTCCAGGTGTATGGGGATGGGGACCACAATGGACTCTATGCAGATAACGTCAACGACTCTACATTTACTGGCTTTCTTCTCTACCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR CAA 90 bp | ACAATATTTGTGTACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCCACCTGGAGCCAGACTaGGTCTCCCACCTCCAGATG | + |
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Preference number: 5 (lower is better) Translates to: TIFVYSEQKNSMVYFQTVHLEPD*VSHLQM Trigger: CATCTGGAGGTGGGAGACCAAGTCTGGCTCCAGGTG...GACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTACACAAATATTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR CAA 90 bp | ACAATATTTGTGTACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCCCTGCACAAGTTCCCTaGGGTGGAGGGACCAAAGCA | + |
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Preference number: 5 (lower is better) Translates to: TIFVYSEQKNSMVYFQTVPAQVP*GGGTKA Trigger: TGCTTTGGTCCCTCCACCCAAGGGAACTTGTGCAGG...GACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTACACAAATATTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR CAA 90 bp | TACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCATGCGAATATTGGTGAAGAGAACGGCCTaGTCCTTCTTGAAGAGGCTC | + |
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Preference number: 5 (lower is better) Translates to: YSEQKNSMVYFQTVMRILVKRTA*SFLKRL Trigger: GAGCCTCTTCAAGAAGGACAAGGCCGTTCTCTTCAC...CAATATTCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS-3UTR CAA 90 bp | TGGGTCTTTAGACATTCATACACTCAGCCTGTGAGAAGAGTAATCACTGTATTTACGGCCTTGTCCTTCTaGAAGAGGCTCACCTTCACA | + |
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Preference number: 5 (lower is better) Translates to: WVFRHSYTQPVRRVITVFTALSF*KRLTFT Trigger: TGTGAAGGTGAGCCTCTTCAAGAAGGACAAGGCCGT...AAATACAGTGATTACTCTTCTCACAGGCTGAGTGTATGAATGTCTAAAGACCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS GCA 72 bp | GTGGCCAGGATGTCCTGGGATGCCTGCCATCCAACCTaGACAAGTTCCCTTGGGTGGAGGGACCAAAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: VARMSWDACHPT*TSSLGWRDQSR Trigger: CCTGCTTTGGTCCCTCCACCCAAGGGAACTTGTGCAGGTTGGATGGCAGGCATCCCAGGACATCCTGGCCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023593.6 ENSMUST00000171309.2 |
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| CDS CCA 72 bp | GTGCCATCTCTGCCATCACGGCCTGGTGTGCCATTGTaGCCAGGATGTCCTGGGATGCCTGCCATCCAACCT | + |
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Preference number: 6 (lower is better) Translates to: VPSLPSRPGVPL*PGCPGMPAIQP Trigger: AGGTTGGATGGCAGGCATCCCAGGACATCCTGGCCACAATGGCACACCAGGCCGTGATGGCAGAGATGGCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023593.6 ENSMUST00000171309.2 |
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| CDS CCA 72 bp | CTTCTCTCCAGGAGTGCCATCTCTGCCATCACGGCCTaGTGTGCCATTGTGGCCAGGATGTCCTGGGATGCC | + |
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Preference number: 6 (lower is better) Translates to: LLSRSAISAITA*CAIVARMSWDA Trigger: GGCATCCCAGGACATCCTGGCCACAATGGCACACCAGGCCGTGATGGCAGAGATGGCACTCCTGGAGAGAAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023593.6 ENSMUST00000171309.2 |
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| CDS TCA 72 bp | AACAGTGACGCGGGTCTCCAGCCCCACACTGAACGCTaGGCGATACACATAAGCGGCTTCTCCAGGCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: NSDAGLQPHTER*AIHISGFSRLS Trigger: GGAGAGCCTGGAGAAGCCGCTTATGTGTATCGCTCAGCGTTCAGTGTGGGGCTGGAGACCCGCGTCACTGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023593.6 ENSMUST00000171309.2 |
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| CDS CAA 72 bp | ATTGTGGTCCCCATCCCCATACACCTGGAGCCAGACTaGGTCTCCCACCTCCAGATGGAGGAGCACAGAGCC | + |
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Preference number: 6 (lower is better) Translates to: IVVPIPIHLEPD*VSHLQMEEHRA Trigger: GGCTCTGTGCTCCTCCATCTGGAGGTGGGAGACCAAGTCTGGCTCCAGGTGTATGGGGATGGGGACCACAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS CAA 90 bp | ATAGAGTCCATTGTGGTCCCCATCCCCATACACCTGGAGCCAGACTaGGTCTCCCACCTCCAGATGGAGGAGCACAGAGCCAGAGGCCTG | + |
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Preference number: 6 (lower is better) Translates to: IESIVVPIPIHLEPD*VSHLQMEEHRARGL Trigger: CAGGCCTCTGGCTCTGTGCTCCTCCATCTGGAGGTGGGAGACCAAGTCTGGCTCCAGGTGTATGGGGATGGGGACCACAATGGACTCTAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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| CDS CCA 72 bp | ATCACGGCCTGGTGTGCCATTGTGGCCAGGATGTCCTaGGATGCCTGCCATCCAACCTGCACAAGTTCCCTT | + |
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Preference number: 6 (lower is better) Translates to: ITAWCAIVARMS*DACHPTCTSSL Trigger: AAGGGAACTTGTGCAGGTTGGATGGCAGGCATCCCAGGACATCCTGGCCACAATGGCACACCAGGCCGTGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023593.6 ENSMUST00000171309.2 |
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| CDS CAA 90 bp | CCAGGATGTCCTGGGATGCCTGCCATCCAACCTGCACAAGTTCCCTaGGGTGGAGGGACCAAAGCAGGAGCTAGCTCTTCAGTTGTAGTA | + |
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Preference number: 6 (lower is better) Translates to: PGCPGMPAIQPAQVP*GGGTKAGASSSVVV Trigger: TACTACAACTGAAGAGCTAGCTCCTGCTTTGGTCCCTCCACCCAAGGGAACTTGTGCAGGTTGGATGGCAGGCATCCCAGGACATCCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023593.6 ENSMUST00000171309.2 |
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| CDS GCA 72 bp | GCTTGCAACAGTAGCATCCTGAGCCCTTCACACTGCTaGAGAGAGCAAAATCTGAACACAGCCCAAGTGGGA | + |
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Preference number: 6 (lower is better) Translates to: ACNSSILSPSHC*REQNLNTAQVG Trigger: TCCCACTTGGGCTGTGTTCAGATTTTGCTCTCTGCAGCAGTGTGAAGGGCTCAGGATGCTACTGTTGCAAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171309.2 |
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| CDS TCA 72 bp | GCTAGCTCTTCAGTTGTAGTAACGTCATCTTCGGCATaGCTGGGCAGGATTAAGAGGAACAGGAGAGCTTGC | + |
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Preference number: 6 (lower is better) Translates to: ASSSVVVTSSSA*LGRIKRNRRAC Trigger: GCAAGCTCTCCTGTTCCTCTTAATCCTGCCCAGTCATGCCGAAGATGACGTTACTACAACTGAAGAGCTAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023593.6 ENSMUST00000171309.2 |
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| CDS GCA 72 bp | AAGAAAGCCAGTAAATGTAGAGTCGTTGACGTTATCTaGATAGAGTCCATTGTGGTCCCCATCCCCATACAC | + |
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Preference number: 6 (lower is better) Translates to: KKASKCRVVDVI*IESIVVPIPIH Trigger: GTGTATGGGGATGGGGACCACAATGGACTCTATGCAGATAACGTCAACGACTCTACATTTACTGGCTTTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023593.6 |
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