RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ADIPOQ (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022878

Ensembl transcript IDs: ENSMUST00000023593.6, ENSMUST00000171309.2

Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp TACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCATGCGAATATTGGTGTCGACTGTTCCATaGTTCTCCTGGTGTATGGGC +
Preference number: 2 (lower is better)
Translates to: YSEQKNSMVYFQTVMRILVSTVP*FSWCMG
Trigger: GCCCATACACCAGGAGAATCATGGAACAGTCGACAC...CAATATTCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
3UTR-3UTR TCA 90 bp ATAGCATGGTCTACTTCCAGACAGTCATGCGAATATTGTGAAGCCCCCATACCACGTTTAATGAACAAGTaGGTACACGTGTGGATAATA +
Preference number: 2 (lower is better)
Translates to: IAWSTSRQSCEYCEAPIPRLMNK*VHVWII
Trigger: TATTATCCACACGTGTACTCACTTGTTCATTAAACG...TGGTATGGGGGCTTCACAATATTCGCATGACTGTCTGGAAGTAGACCATGCTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
3UTR-3UTR GCA 90 bp ATAGCATGGTCTACTTCCAGACAGTCATGCGAATATTGTGAAGCCCCCATACCATTTTCATTCTGTTATTaGTACCATGTAAGAGTCGTG +
Preference number: 2 (lower is better)
Translates to: IAWSTSRQSCEYCEAPIPFSFCY*YHVRVV
Trigger: CACGACTCTTACATGGTAGCAATAACAGAATGAAAA...TGGTATGGGGGCTTCACAATATTCGCATGACTGTCTGGAAGTAGACCATGCTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
3UTR TCA 72 bp AGCATGGTCTACTTCCAGACAGTCATGCGAATATTGTaGAGCCCCCATACCAAATGTGATTTTCATTCTGTT +
Preference number: 3 (lower is better)
Translates to: SMVYFQTVMRIL*SPHTKCDFHSV
Trigger: AACAGAATGAAAATCACATTTGGTATGGGGGCTTCACAATATTCGCATGACTGTCTGGAAGTAGACCATGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
3UTR GCA 72 bp AGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCATaGGAATATTGTGAAGCCCCCATACCAAATGTGATT +
Preference number: 3 (lower is better)
Translates to: SRKIAWSTSRQS*EYCEAPIPNVI
Trigger: AATCACATTTGGTATGGGGGCTTCACAATATTCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
3UTR CCA 72 bp GAACAATATTTGTGTACAGTGAGCAGAAAAATAGCATaGTCTACTTCCAGACAGTCATGCGAATATTGTGAA +
Preference number: 3 (lower is better)
Translates to: EQYLCTVSRKIA*STSRQSCEYCE
Trigger: TTCACAATATTCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTACACAAATATTGTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR GCA 90 bp TTTGTGTACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCATGCGACAGGAGTGCCATCTCTaGCATCACGGCCTGGTGTGC +
Preference number: 4 (lower is better)
Translates to: FVYSEQKNSMVYFQTVMRQECHL*HHGLVC
Trigger: GCACACCAGGCCGTGATGGCAGAGATGGCACTCCTG...TCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTACACAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR GCA 90 bp TGTACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCATGCGAATATCAGGCTCTCCTTTCCTaGCAGGGGTTCCGGGGAAGC +
Preference number: 4 (lower is better)
Translates to: CTVSRKIAWSTSRQSCEYQALLS*QGFRGS
Trigger: GCTTCCCCGGAACCCCTGGCAGGAAAGGAGAGCCTG...ATATTCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR CCA 90 bp TACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCATGCGAATATTGTCTGCCATCACGGCCTaGTGTGCCATTGTGGCCAGG +
Preference number: 4 (lower is better)
Translates to: YSEQKNSMVYFQTVMRILSAITA*CAIVAR
Trigger: CCTGGCCACAATGGCACACCAGGCCGTGATGGCAGA...CAATATTCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR CCA 90 bp ACAATATTTGTGTACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCGTGGCCAGGATGTCCTaGGATGCCTGCCATCCAACC +
Preference number: 4 (lower is better)
Translates to: TIFVYSEQKNSMVYFQTVVARMS*DACHPT
Trigger: GGTTGGATGGCAGGCATCCCAGGACATCCTGGCCAC...GACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTACACAAATATTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR CCA 90 bp TACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCATGCGAATATTGACCTGGAGCCAGACTTaGTCTCCCACCTCCAGATGG +
Preference number: 4 (lower is better)
Translates to: YSEQKNSMVYFQTVMRILTWSQT*SPTSRW
Trigger: CCATCTGGAGGTGGGAGACCAAGTCTGGCTCCAGGT...CAATATTCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR TCA 90 bp TTTGTGTACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCATGCGAACGTCATCTTCGGCATaGCTGGGCAGGATTAAGAGG +
Preference number: 4 (lower is better)
Translates to: FVYSEQKNSMVYFQTVMRTSSSA*LGRIKR
Trigger: CCTCTTAATCCTGCCCAGTCATGCCGAAGATGACGT...TCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTACACAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR TCA 90 bp TTTGTGTACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCATGCGAGATACTGGTCGTAGGTaGAGAGAACGGCCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: FVYSEQKNSMVYFQTVMRDTGRR*RERPCP
Trigger: AGGACAAGGCCGTTCTCTTCACCTACGACCAGTATC...TCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTACACAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR GCA 90 bp ACAATATTTGTGTACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCGCCTGCCATCCAACCTaGACAAGTTCCCTTGGGTGG +
Preference number: 4 (lower is better)
Translates to: TIFVYSEQKNSMVYFQTVACHPT*TSSLGW
Trigger: CCACCCAAGGGAACTTGTGCAGGTTGGATGGCAGGC...GACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTACACAAATATTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
3UTR CAA 72 bp GAAGCCCCCATACCAAATGTGATTTTCATTCTGTTATaGCTACCATGTAAGAGTCGTGGAGACCAGGGAGTG +
Preference number: 4 (lower is better)
Translates to: EAPIPNVIFILL*LPCKSRGDQGV
Trigger: CACTCCCTGGTCTCCACGACTCTTACATGGTAGCAATAACAGAATGAAAATCACATTTGGTATGGGGGCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR TCA 90 bp ATAGCATGGTCTACTTCCAGACAGTCATGCGAATATTGTGAAGCCCCCATACCACTTTCATGTACACCGTaGTGTGGTAAGAGAAGTAGT +
Preference number: 4 (lower is better)
Translates to: IAWSTSRQSCEYCEAPIPLSCTP*CGKRSS
Trigger: ACTACTTCTCTTACCACATCACGGTGTACATGAAAG...TGGTATGGGGGCTTCACAATATTCGCATGACTGTCTGGAAGTAGACCATGCTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR GCA 90 bp CACTCAGCCTGTGAGAAGAGTAATCACTGTATTTCATATTTACATTATAGGGTTCAGGATGTCCTGGGATaGCTGCCATCCAACCTGCAC +
Preference number: 4 (lower is better)
Translates to: HSACEKSNHCISYLHYRVQDVLG*LPSNLH
Trigger: GTGCAGGTTGGATGGCAGGCATCCCAGGACATCCTG...AACCCTATAATGTAAATATGAAATACAGTGATTACTCTTCTCACAGGCTGAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR CCA 90 bp CACTCAGCCTGTGAGAAGAGTAATCACTGTATTTCATATTTACATTATAGGGTTTCTCCCACCTCCAGATaGAGGAGCACAGAGCCAGAG +
Preference number: 4 (lower is better)
Translates to: HSACEKSNHCISYLHYRVSPTSR*RSTEPE
Trigger: CTCTGGCTCTGTGCTCCTCCATCTGGAGGTGGGAGA...AACCCTATAATGTAAATATGAAATACAGTGATTACTCTTCTCACAGGCTGAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR CCA 90 bp CACTCAGCCTGTGAGAAGAGTAATCACTGTATTTCATATTTACATTATAGGGTTCCATCCCCATACACCTaGAGCCAGACTTGGTCTCCC +
Preference number: 4 (lower is better)
Translates to: HSACEKSNHCISYLHYRVPSPYT*SQTWSP
Trigger: GGGAGACCAAGTCTGGCTCCAGGTGTATGGGGATGG...AACCCTATAATGTAAATATGAAATACAGTGATTACTCTTCTCACAGGCTGAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR GCA 90 bp TGGGTCTTTAGACATTCATACACTCAGCCTGTGAGAAGAGTAATCACTGTATTTAGAGTCCCGGAATGTTaGAGTAGAACTTGCCAGTGC +
Preference number: 4 (lower is better)
Translates to: WVFRHSYTQPVRRVITVFRVPEC*SRTCQC
Trigger: GCACTGGCAAGTTCTACTGCAACATTCCGGGACTCT...AAATACAGTGATTACTCTTCTCACAGGCTGAGTGTATGAATGTCTAAAGACCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR CCA 90 bp CACTCAGCCTGTGAGAAGAGTAATCACTGTATTTCATATTTACATTATAGGGTTACAAGTTCCCTTGGGTaGAGGGACCAAAGCAGGAGC +
Preference number: 4 (lower is better)
Translates to: HSACEKSNHCISYLHYRVTSSLG*RDQSRS
Trigger: GCTCCTGCTTTGGTCCCTCCACCCAAGGGAACTTGT...AACCCTATAATGTAAATATGAAATACAGTGATTACTCTTCTCACAGGCTGAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR CCA 90 bp CACTCAGCCTGTGAGAAGAGTAATCACTGTATTTCATATTTACATTATAGGGTTCTGCACAAGTTCCCTTaGGTGGAGGGACCAAAGCAG +
Preference number: 4 (lower is better)
Translates to: HSACEKSNHCISYLHYRVLHKFP*VEGPKQ
Trigger: CTGCTTTGGTCCCTCCACCCAAGGGAACTTGTGCAG...AACCCTATAATGTAAATATGAAATACAGTGATTACTCTTCTCACAGGCTGAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR TCA 90 bp CACTCAGCCTGTGAGAAGAGTAATCACTGTATTTCATATTTACATTATAGGGTTCGGCCTTGTCCTTCTTaGAGAGGCTCACCTTCACAT +
Preference number: 4 (lower is better)
Translates to: HSACEKSNHCISYLHYRVRPCPS*RGSPSH
Trigger: ATGTGAAGGTGAGCCTCTTCAAGAAGGACAAGGCCG...AACCCTATAATGTAAATATGAAATACAGTGATTACTCTTCTCACAGGCTGAGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR GCA 90 bp TGGGTCTTTAGACATTCATACACTCAGCCTGTGAGAAGAGTAATCACTGTATTTAGAACTTGCCAGTGCTaGCGTCATAATGATTCTGTT +
Preference number: 4 (lower is better)
Translates to: WVFRHSYTQPVRRVITVFRTCQC*RHNDSV
Trigger: AACAGAATCATTATGACGGCAGCACTGGCAAGTTCT...AAATACAGTGATTACTCTTCTCACAGGCTGAGTGTATGAATGTCTAAAGACCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS GCA 90 bp TGCCATCACGGCCTGGTGTGCCATTGTGGCCAGGATGTCCTGGGATaGCTGCCATCCAACCTGCACAAGTTCCCTTGGGTGGAGGGACCA +
Preference number: 5 (lower is better)
Translates to: CHHGLVCHCGQDVLG*LPSNLHKFPWVEGP
Trigger: TGGTCCCTCCACCCAAGGGAACTTGTGCAGGTTGGATGGCAGGCATCCCAGGACATCCTGGCCACAATGGCACACCAGGCCGTGATGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023593.6
ENSMUST00000171309.2
CDS GCA 90 bp ATCACGGCCTGGTGTGCCATTGTGGCCAGGATGTCCTGGGATGCCTaGCATCCAACCTGCACAAGTTCCCTTGGGTGGAGGGACCAAAGC +
Preference number: 5 (lower is better)
Translates to: ITAWCAIVARMSWDA*HPTCTSSLGWRDQS
Trigger: GCTTTGGTCCCTCCACCCAAGGGAACTTGTGCAGGTTGGATGGCAGGCATCCCAGGACATCCTGGCCACAATGGCACACCAGGCCGTGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023593.6
ENSMUST00000171309.2
CDS CCA 90 bp ATCTCTGCCATCACGGCCTGGTGTGCCATTGTGGCCAGGATGTCCTaGGATGCCTGCCATCCAACCTGCACAAGTTCCCTTGGGTGGAGG +
Preference number: 5 (lower is better)
Translates to: ISAITAWCAIVARMS*DACHPTCTSSLGWR
Trigger: CCTCCACCCAAGGGAACTTGTGCAGGTTGGATGGCAGGCATCCCAGGACATCCTGGCCACAATGGCACACCAGGCCGTGATGGCAGAGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023593.6
ENSMUST00000171309.2
CDS CCA 90 bp TTTCTCTCCCTTCTCTCCAGGAGTGCCATCTCTGCCATCACGGCCTaGTGTGCCATTGTGGCCAGGATGTCCTGGGATGCCTGCCATCCA +
Preference number: 5 (lower is better)
Translates to: FLSLLSRSAISAITA*CAIVARMSWDACHP
Trigger: TGGATGGCAGGCATCCCAGGACATCCTGGCCACAATGGCACACCAGGCCGTGATGGCAGAGATGGCACTCCTGGAGAGAAGGGAGAGAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023593.6
ENSMUST00000171309.2
CDS TCA 90 bp TACATTGGGAACAGTGACGCGGGTCTCCAGCCCCACACTGAACGCTaGGCGATACACATAAGCGGCTTCTCCAGGCTCTCCTTTCCTGCC +
Preference number: 5 (lower is better)
Translates to: YIGNSDAGLQPHTER*AIHISGFSRLSFPA
Trigger: GGCAGGAAAGGAGAGCCTGGAGAAGCCGCTTATGTGTATCGCTCAGCGTTCAGTGTGGGGCTGGAGACCCGCGTCACTGTTCCCAATGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023593.6
ENSMUST00000171309.2
CDS GCA 90 bp AGGAACAGGAGAGCTTGCAACAGTAGCATCCTGAGCCCTTCACACTaGTGCAGAGAGCAAAATCTGAACACAGCCCAAGTGGGATTCTGC +
Preference number: 5 (lower is better)
Translates to: RNRRACNSSILSPSH*CREQNLNTAQVGFC
Trigger: GCAGAATCCCACTTGGGCTGTGTTCAGATTTTGCTCTCTGCAGCAGTGTGAAGGGCTCAGGATGCTACTGTTGCAAGCTCTCCTGTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171309.2
CDS TCA 90 bp AAAGCAGGAGCTAGCTCTTCAGTTGTAGTAACGTCATCTTCGGCATaGCTGGGCAGGATTAAGAGGAACAGGAGAGCTTGCAACAGTAGC +
Preference number: 5 (lower is better)
Translates to: KAGASSSVVVTSSSA*LGRIKRNRRACNSS
Trigger: GCTACTGTTGCAAGCTCTCCTGTTCCTCTTAATCCTGCCCAGTCATGCCGAAGATGACGTTACTACAACTGAAGAGCTAGCTCCTGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023593.6
ENSMUST00000171309.2
CDS GCA 90 bp ATGGTAGAGAAGAAAGCCAGTAAATGTAGAGTCGTTGACGTTATCTaGATAGAGTCCATTGTGGTCCCCATCCCCATACACCTGGAGCCA +
Preference number: 5 (lower is better)
Translates to: MVEKKASKCRVVDVI*IESIVVPIPIHLEP
Trigger: TGGCTCCAGGTGTATGGGGATGGGGACCACAATGGACTCTATGCAGATAACGTCAACGACTCTACATTTACTGGCTTTCTTCTCTACCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR CAA 90 bp ACAATATTTGTGTACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCCACCTGGAGCCAGACTaGGTCTCCCACCTCCAGATG +
Preference number: 5 (lower is better)
Translates to: TIFVYSEQKNSMVYFQTVHLEPD*VSHLQM
Trigger: CATCTGGAGGTGGGAGACCAAGTCTGGCTCCAGGTG...GACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTACACAAATATTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR CAA 90 bp ACAATATTTGTGTACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCCCTGCACAAGTTCCCTaGGGTGGAGGGACCAAAGCA +
Preference number: 5 (lower is better)
Translates to: TIFVYSEQKNSMVYFQTVPAQVP*GGGTKA
Trigger: TGCTTTGGTCCCTCCACCCAAGGGAACTTGTGCAGG...GACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTACACAAATATTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR CAA 90 bp TACAGTGAGCAGAAAAATAGCATGGTCTACTTCCAGACAGTCATGCGAATATTGGTGAAGAGAACGGCCTaGTCCTTCTTGAAGAGGCTC +
Preference number: 5 (lower is better)
Translates to: YSEQKNSMVYFQTVMRILVKRTA*SFLKRL
Trigger: GAGCCTCTTCAAGAAGGACAAGGCCGTTCTCTTCAC...CAATATTCGCATGACTGTCTGGAAGTAGACCATGCTATTTTTCTGCTCACTGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS-3UTR CAA 90 bp TGGGTCTTTAGACATTCATACACTCAGCCTGTGAGAAGAGTAATCACTGTATTTACGGCCTTGTCCTTCTaGAAGAGGCTCACCTTCACA +
Preference number: 5 (lower is better)
Translates to: WVFRHSYTQPVRRVITVFTALSF*KRLTFT
Trigger: TGTGAAGGTGAGCCTCTTCAAGAAGGACAAGGCCGT...AAATACAGTGATTACTCTTCTCACAGGCTGAGTGTATGAATGTCTAAAGACCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS GCA 72 bp GTGGCCAGGATGTCCTGGGATGCCTGCCATCCAACCTaGACAAGTTCCCTTGGGTGGAGGGACCAAAGCAGG +
Preference number: 6 (lower is better)
Translates to: VARMSWDACHPT*TSSLGWRDQSR
Trigger: CCTGCTTTGGTCCCTCCACCCAAGGGAACTTGTGCAGGTTGGATGGCAGGCATCCCAGGACATCCTGGCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023593.6
ENSMUST00000171309.2
CDS CCA 72 bp GTGCCATCTCTGCCATCACGGCCTGGTGTGCCATTGTaGCCAGGATGTCCTGGGATGCCTGCCATCCAACCT +
Preference number: 6 (lower is better)
Translates to: VPSLPSRPGVPL*PGCPGMPAIQP
Trigger: AGGTTGGATGGCAGGCATCCCAGGACATCCTGGCCACAATGGCACACCAGGCCGTGATGGCAGAGATGGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023593.6
ENSMUST00000171309.2
CDS CCA 72 bp CTTCTCTCCAGGAGTGCCATCTCTGCCATCACGGCCTaGTGTGCCATTGTGGCCAGGATGTCCTGGGATGCC +
Preference number: 6 (lower is better)
Translates to: LLSRSAISAITA*CAIVARMSWDA
Trigger: GGCATCCCAGGACATCCTGGCCACAATGGCACACCAGGCCGTGATGGCAGAGATGGCACTCCTGGAGAGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023593.6
ENSMUST00000171309.2
CDS TCA 72 bp AACAGTGACGCGGGTCTCCAGCCCCACACTGAACGCTaGGCGATACACATAAGCGGCTTCTCCAGGCTCTCC +
Preference number: 6 (lower is better)
Translates to: NSDAGLQPHTER*AIHISGFSRLS
Trigger: GGAGAGCCTGGAGAAGCCGCTTATGTGTATCGCTCAGCGTTCAGTGTGGGGCTGGAGACCCGCGTCACTGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023593.6
ENSMUST00000171309.2
CDS CAA 72 bp ATTGTGGTCCCCATCCCCATACACCTGGAGCCAGACTaGGTCTCCCACCTCCAGATGGAGGAGCACAGAGCC +
Preference number: 6 (lower is better)
Translates to: IVVPIPIHLEPD*VSHLQMEEHRA
Trigger: GGCTCTGTGCTCCTCCATCTGGAGGTGGGAGACCAAGTCTGGCTCCAGGTGTATGGGGATGGGGACCACAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS CAA 90 bp ATAGAGTCCATTGTGGTCCCCATCCCCATACACCTGGAGCCAGACTaGGTCTCCCACCTCCAGATGGAGGAGCACAGAGCCAGAGGCCTG +
Preference number: 6 (lower is better)
Translates to: IESIVVPIPIHLEPD*VSHLQMEEHRARGL
Trigger: CAGGCCTCTGGCTCTGTGCTCCTCCATCTGGAGGTGGGAGACCAAGTCTGGCTCCAGGTGTATGGGGATGGGGACCACAATGGACTCTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6
CDS CCA 72 bp ATCACGGCCTGGTGTGCCATTGTGGCCAGGATGTCCTaGGATGCCTGCCATCCAACCTGCACAAGTTCCCTT +
Preference number: 6 (lower is better)
Translates to: ITAWCAIVARMS*DACHPTCTSSL
Trigger: AAGGGAACTTGTGCAGGTTGGATGGCAGGCATCCCAGGACATCCTGGCCACAATGGCACACCAGGCCGTGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023593.6
ENSMUST00000171309.2
CDS CAA 90 bp CCAGGATGTCCTGGGATGCCTGCCATCCAACCTGCACAAGTTCCCTaGGGTGGAGGGACCAAAGCAGGAGCTAGCTCTTCAGTTGTAGTA +
Preference number: 6 (lower is better)
Translates to: PGCPGMPAIQPAQVP*GGGTKAGASSSVVV
Trigger: TACTACAACTGAAGAGCTAGCTCCTGCTTTGGTCCCTCCACCCAAGGGAACTTGTGCAGGTTGGATGGCAGGCATCCCAGGACATCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023593.6
ENSMUST00000171309.2
CDS GCA 72 bp GCTTGCAACAGTAGCATCCTGAGCCCTTCACACTGCTaGAGAGAGCAAAATCTGAACACAGCCCAAGTGGGA +
Preference number: 6 (lower is better)
Translates to: ACNSSILSPSHC*REQNLNTAQVG
Trigger: TCCCACTTGGGCTGTGTTCAGATTTTGCTCTCTGCAGCAGTGTGAAGGGCTCAGGATGCTACTGTTGCAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171309.2
CDS TCA 72 bp GCTAGCTCTTCAGTTGTAGTAACGTCATCTTCGGCATaGCTGGGCAGGATTAAGAGGAACAGGAGAGCTTGC +
Preference number: 6 (lower is better)
Translates to: ASSSVVVTSSSA*LGRIKRNRRAC
Trigger: GCAAGCTCTCCTGTTCCTCTTAATCCTGCCCAGTCATGCCGAAGATGACGTTACTACAACTGAAGAGCTAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023593.6
ENSMUST00000171309.2
CDS GCA 72 bp AAGAAAGCCAGTAAATGTAGAGTCGTTGACGTTATCTaGATAGAGTCCATTGTGGTCCCCATCCCCATACAC +
Preference number: 6 (lower is better)
Translates to: KKASKCRVVDVI*IESIVVPIPIH
Trigger: GTGTATGGGGATGGGGACCACAATGGACTCTATGCAGATAACGTCAACGACTCTACATTTACTGGCTTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023593.6