Pregenerated sensors for ADIG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044405Ensembl transcript IDs: ENSMUST00000059889.4, ENSMUST00000109484.2
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGGCTCTTCCAGGTTCCGGGTCATCTGTGGTGATGGAGAAGGGATaGTTTGGCAAGAGGCTTGGCAGGTCTGACAACGGGAGATCCCAG | + |
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Preference number: 1 (lower is better) Translates to: LALPGSGSSVVMEKG*FGKRLGRSDNGRSQ Trigger: CTGGGATCTCCCGTTGTCAGACCTGCCAAGCCTCTTGCCAAACCATCCCTTCTCCATCACCACAGATGACCCGGAACCTGGAAGAGCCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059889.4 ENSMUST00000109484.2 |
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| 3UTR TCA 90 bp | CACAAGAGCACCCCCATTTCTTTAATAGGTATCCAACACACCCTGTaGGTTGACTGGCCAACTGGCCCCCATAAGCCGCTTGGGCCTGGC | + |
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Preference number: 1 (lower is better) Translates to: HKSTPISLIGIQHTL*VDWPTGPHKPLGPG Trigger: GCCAGGCCCAAGCGGCTTATGGGGGCCAGTTGGCCAGTCAACTCACAGGGTGTGTTGGATACCTATTAAAGAAATGGGGGTGCTCTTGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000059889.4 ENSMUST00000109484.2 |
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| 3UTR CAA 90 bp | AACACACCCTGTGAGTTGACTGGCCAACTGGCCCCCATAAGCCGCTaGGGCCTGGCTCTTCCAGGTTCCGGGTCATCTGTGGTGATGGAG | + |
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Preference number: 2 (lower is better) Translates to: NTPCELTGQLAPISR*GLALPGSGSSVVME Trigger: CTCCATCACCACAGATGACCCGGAACCTGGAAGAGCCAGGCCCAAGCGGCTTATGGGGGCCAGTTGGCCAGTCAACTCACAGGGTGTGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059889.4 ENSMUST00000109484.2 |
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| 3UTR-3UTR CCA 90 bp | GTAGGGGCACAAGAGCACCCCCATTTCTTTAATAGGTATCCAACACACCCTGTGGGAGAAGGGATGGTTTaGCAAGAGGCTTGGCAGGTC | + |
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Preference number: 2 (lower is better) Translates to: VGAQEHPHFFNRYPTHPVGEGMV*QEAWQV Trigger: GACCTGCCAAGCCTCTTGCCAAACCATCCCTTCTCC...CACAGGGTGTGTTGGATACCTATTAAAGAAATGGGGGTGCTCTTGTGCCCCTAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059889.4 ENSMUST00000109484.2 |
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| 3UTR TCA 72 bp | GGAGAAGGGATGGTTTGGCAAGAGGCTTGGCAGGTCTaGCAACGGGAGATCCCAGGGAAGGCCATCGGTCAC | + |
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Preference number: 3 (lower is better) Translates to: GEGMVWQEAWQV*QREIPGKAIGH Trigger: GTGACCGATGGCCTTCCCTGGGATCTCCCGTTGTCAGACCTGCCAAGCCTCTTGCCAAACCATCCCTTCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059889.4 ENSMUST00000109484.2 |
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| 3UTR TCA 72 bp | TGGGCCTGGCTCTTCCAGGTTCCGGGTCATCTGTGGTaGTGGAGAAGGGATGGTTTGGCAAGAGGCTTGGCA | + |
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Preference number: 3 (lower is better) Translates to: WAWLFQVPGHLW*WRRDGLARGLA Trigger: TGCCAAGCCTCTTGCCAAACCATCCCTTCTCCATCACCACAGATGACCCGGAACCTGGAAGAGCCAGGCCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059889.4 ENSMUST00000109484.2 |
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| 3UTR CCA 72 bp | CCAGGTTCCGGGTCATCTGTGGTGATGGAGAAGGGATaGTTTGGCAAGAGGCTTGGCAGGTCTGACAACGGG | + |
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Preference number: 3 (lower is better) Translates to: PGSGSSVVMEKG*FGKRLGRSDNG Trigger: CCCGTTGTCAGACCTGCCAAGCCTCTTGCCAAACCATCCCTTCTCCATCACCACAGATGACCCGGAACCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059889.4 ENSMUST00000109484.2 |
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| 3UTR TCA 72 bp | ACCCCCATTTCTTTAATAGGTATCCAACACACCCTGTaGGTTGACTGGCCAACTGGCCCCCATAAGCCGCTT | + |
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Preference number: 3 (lower is better) Translates to: TPISLIGIQHTL*VDWPTGPHKPL Trigger: AAGCGGCTTATGGGGGCCAGTTGGCCAGTCAACTCACAGGGTGTGTTGGATACCTATTAAAGAAATGGGGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000059889.4 ENSMUST00000109484.2 |
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| CDS-3UTR TCA 90 bp | TCTGTGGTGATGGAGAAGGGATGGTTTGGCAAGAGGCTTGGCAGGTCTGACAACCCAGGAAAGAGAGTGTaGGGTCGCTCACCAGAGGCA | + |
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Preference number: 4 (lower is better) Translates to: SVVMEKGWFGKRLGRSDNPGKRV*GRSPEA Trigger: TGCCTCTGGTGAGCGACCTCACACTCTCTTTCCTGG...GTTGTCAGACCTGCCAAGCCTCTTGCCAAACCATCCCTTCTCCATCACCACAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059889.4 |
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| CDS-3UTR TCA 90 bp | CGGGTCATCTGTGGTGATGGAGAAGGGATGGTTTGGCAAGAGGCTTGGCAGGTCTCCAGGGCTCCCAGTTaGAGCACAAATCTGAATCAT | + |
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Preference number: 4 (lower is better) Translates to: RVICGDGEGMVWQEAWQVSRAPS*STNLNH Trigger: ATGATTCAGATTTGTGCTTCAACTGGGAGCCCTGGA...GACCTGCCAAGCCTCTTGCCAAACCATCCCTTCTCCATCACCACAGATGACCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059889.4 ENSMUST00000109484.2 |
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| CDS-3UTR CCA 90 bp | TCTGTGGTGATGGAGAAGGGATGGTTTGGCAAGAGGCTTGGCAGGTCTGACAACACAGCCACACTCAGATaGTCTTTTGCTCCAGGGCTC | + |
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Preference number: 4 (lower is better) Translates to: SVVMEKGWFGKRLGRSDNTATLR*SFAPGL Trigger: GAGCCCTGGAGCAAAAGACCATCTGAGTGTGGCTGT...GTTGTCAGACCTGCCAAGCCTCTTGCCAAACCATCCCTTCTCCATCACCACAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059889.4 ENSMUST00000109484.2 |
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| CDS-3UTR CCA 90 bp | GTAGGGGCACAAGAGCACCCCCATTTCTTTAATAGGTATCCAACACACCCTGTGACAGCCACACTCAGATaGTCTTTTGCTCCAGGGCTC | + |
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Preference number: 4 (lower is better) Translates to: VGAQEHPHFFNRYPTHPVTATLR*SFAPGL Trigger: GAGCCCTGGAGCAAAAGACCATCTGAGTGTGGCTGT...CACAGGGTGTGTTGGATACCTATTAAAGAAATGGGGGTGCTCTTGTGCCCCTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000059889.4 ENSMUST00000109484.2 |
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| CDS-3UTR TCA 90 bp | GTAGGGGCACAAGAGCACCCCCATTTCTTTAATAGGTATCCAACACACCCTGTGTCCAGGGCTCCCAGTTaGAGCACAAATCTGAATCAT | + |
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Preference number: 4 (lower is better) Translates to: VGAQEHPHFFNRYPTHPVSRAPS*STNLNH Trigger: ATGATTCAGATTTGTGCTTCAACTGGGAGCCCTGGA...CACAGGGTGTGTTGGATACCTATTAAAGAAATGGGGGTGCTCTTGTGCCCCTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059889.4 ENSMUST00000109484.2 |
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| CDS-3UTR CAA 90 bp | TTCCGGGTCATCTGTGGTGATGGAGAAGGGATGGTTTGGCAAGAGGCTTGGCAGCACTCAGATGGTCTTTaGCTCCAGGGCTCCCAGTTG | + |
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Preference number: 5 (lower is better) Translates to: FRVICGDGEGMVWQEAWQHSDGL*LQGSQL Trigger: CAACTGGGAGCCCTGGAGCAAAAGACCATCTGAGTG...CTGCCAAGCCTCTTGCCAAACCATCCCTTCTCCATCACCACAGATGACCCGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059889.4 ENSMUST00000109484.2 |
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| CDS-3UTR CAA 90 bp | GGGTCATCTGTGGTGATGGAGAAGGGATGGTTTGGCAAGAGGCTTGGCAGGTCTCACTCAGATGGTCTTTaGCTCCAGGGCTCCCAGTTG | + |
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Preference number: 5 (lower is better) Translates to: GSSVVMEKGWFGKRLGRSHSDGL*LQGSQL Trigger: CAACTGGGAGCCCTGGAGCAAAAGACCATCTGAGTG...AGACCTGCCAAGCCTCTTGCCAAACCATCCCTTCTCCATCACCACAGATGACCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059889.4 ENSMUST00000109484.2 |
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| CDS-3UTR CAA 90 bp | CGGGTCATCTGTGGTGATGGAGAAGGGATGGTTTGGCAAGAGGCTTGGCAGGTCCTCCAGGGCTCCCAGTaGAAGCACAAATCTGAATCA | + |
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Preference number: 5 (lower is better) Translates to: RVICGDGEGMVWQEAWQVLQGSQ*KHKSES Trigger: TGATTCAGATTTGTGCTTCAACTGGGAGCCCTGGAG...GACCTGCCAAGCCTCTTGCCAAACCATCCCTTCTCCATCACCACAGATGACCCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059889.4 ENSMUST00000109484.2 |
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| CDS-3UTR CAA 90 bp | TCTGTGGTGATGGAGAAGGGATGGTTTGGCAAGAGGCTTGGCAGGTCTGACAACCTCCAGGGCTCCCAGTaGAAGCACAAATCTGAATCA | + |
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Preference number: 5 (lower is better) Translates to: SVVMEKGWFGKRLGRSDNLQGSQ*KHKSES Trigger: TGATTCAGATTTGTGCTTCAACTGGGAGCCCTGGAG...GTTGTCAGACCTGCCAAGCCTCTTGCCAAACCATCCCTTCTCCATCACCACAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059889.4 ENSMUST00000109484.2 |
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| CDS-3UTR CAA 90 bp | GTAGGGGCACAAGAGCACCCCCATTTCTTTAATAGGTATCCAACACACCCTGTGCTGAATCATCTTCCTTaGACTCAGAGGCACCAGAGG | + |
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Preference number: 5 (lower is better) Translates to: VGAQEHPHFFNRYPTHPVLNHLP*TQRHQR Trigger: CCTCTGGTGCCTCTGAGTCAAAGGAAGATGATTCAG...CACAGGGTGTGTTGGATACCTATTAAAGAAATGGGGGTGCTCTTGTGCCCCTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109484.2 |
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| CDS CCA 72 bp | CTCACCAGGAAATGTCTCCTCACAGCCACACTCAGATaGTCTTTTGCTCCAGGGCTCCCAGTTGAAGCACAA | + |
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Preference number: 6 (lower is better) Translates to: LTRKCLLTATLR*SFAPGLPVEAQ Trigger: TTGTGCTTCAACTGGGAGCCCTGGAGCAAAAGACCATCTGAGTGTGGCTGTGAGGAGACATTTCCTGGTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059889.4 ENSMUST00000109484.2 |
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