RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ADGRG6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039116

Ensembl transcript IDs: ENSMUST00000041168.6, ENSMUST00000208429.3, ENSMUST00000238680.2

Found 255 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCAGTCAGTCCTCTAAGCTCTGCAGTTCCCTACAGAGCAGCACACTaGCATTCCACCGGCGTAGCTTTCCGTGCTTCTTGGGCATCACAC +
Preference number: 1 (lower is better)
Translates to: AVSPLSSAVPYRAAH*HSTGVAFRASWASH
Trigger: GTGTGATGCCCAAGAAGCACGGAAAGCTACGCCGGTGGAATGTCAGTGTGCTGCTCTGTAGGGAACTGCAGAGCTTAGAGGACTGACTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
3UTR GCA 90 bp TCCCTACAGAGCAGCACACTGACATTCCACCGGCGTAGCTTTCCGTaGTTCTTGGGCATCACACTTCTCCAGACAGGCTTTCTTTTCCCT +
Preference number: 1 (lower is better)
Translates to: SLQSSTLTFHRRSFP*FLGITLLQTGFLFP
Trigger: AGGGAAAAGAAAGCCTGTCTGGAGAAGTGTGATGCCCAAGAAGCACGGAAAGCTACGCCGGTGGAATGTCAGTGTGCTGCTCTGTAGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
3UTR CCA 90 bp AGGCTGGCTCTGCTAAAATCTCCCTTTGTGGTCACTGTGCTATCTTaGAAACCTGAAACTTCCCAGAGAACCCTGAGCATGGGGCTAAAG +
Preference number: 1 (lower is better)
Translates to: RLALLKSPFVVTVLS*KPETSQRTLSMGLK
Trigger: CTTTAGCCCCATGCTCAGGGTTCTCTGGGAAGTTTCAGGTTTCCAAGATAGCACAGTGACCACAAAGGGAGATTTTAGCAGAGCCAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR GCA 90 bp GTGACTGACAGAGAGCTAAGGGGATCTGTTGGCTGTTTCAAAGCCTaGAAGTTCTTCTACATCCTAGCTGAGAATGGCCTACTTTCTGCA +
Preference number: 1 (lower is better)
Translates to: VTDRELRGSVGCFKA*KFFYILAENGLLSA
Trigger: TGCAGAAAGTAGGCCATTCTCAGCTAGGATGTAGAAGAACTTGCAGGCTTTGAAACAGCCAACAGATCCCCTTAGCTCTCTGTCAGTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR TCA 90 bp AAGACTAAGTCACTATCCCTTTCTCCTACATGGCCTACTCCTTTGTaGAAATCAGGCTCAGCAAAGTTCAGGTCTGCCAAGATGGCAGTC +
Preference number: 1 (lower is better)
Translates to: KTKSLSLSPTWPTPL*KSGSAKFRSAKMAV
Trigger: GACTGCCATCTTGGCAGACCTGAACTTTGCTGAGCCTGATTTTCACAAAGGAGTAGGCCATGTAGGAGAAAGGGATAGTGACTTAGTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR CCA 90 bp TGTCTTTACAAGAGTCAGGCCACTGCCAAGCCTAACTATGAGGTGTaGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGTTCTCCTC +
Preference number: 1 (lower is better)
Translates to: CLYKSQATAKPNYEV*YMRAKLKFLLGVLL
Trigger: GAGGAGAACCCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTTAGGCTTGGCAGTGGCCTGACTCTTGTAAAGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
3UTR CCA 90 bp GAGGAGGCAAATGAGAGCCACAGACTTGTAACTGAAGGCAAAATTTaGACCAGTCGTTTAAATCCACTTGCAAATATGTTTGGCCTGTTG +
Preference number: 1 (lower is better)
Translates to: EEANESHRLVTEGKI*TSRLNPLANMFGLL
Trigger: CAACAGGCCAAACATATTTGCAAGTGGATTTAAACGACTGGTCCAAATTTTGCCTTCAGTTACAAGTCTGTGGCTCTCATTTGCCTCCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR GCA 90 bp AAATGGCAAATCAGCTTTAGCAGTTTCTCACTACTAATTCTAGTTTaGCCTCACAGTTGCTTTACCTGTCATATTCAACAATATCACTAC +
Preference number: 1 (lower is better)
Translates to: KWQISFSSFSLLILV*PHSCFTCHIQQYHY
Trigger: GTAGTGATATTGTTGAATATGACAGGTAAAGCAACTGTGAGGGCAAACTAGAATTAGTAGTGAGAAACTGCTAAAGCTGATTTGCCATTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR GCA 90 bp AGCTTTAGCAGTTTCTCACTACTAATTCTAGTTTGCCCTCACAGTTaGTTTACCTGTCATATTCAACAATATCACTACAGAAAACTGTTT +
Preference number: 1 (lower is better)
Translates to: SFSSFSLLILVCPHS*FTCHIQQYHYRKLF
Trigger: AAACAGTTTTCTGTAGTGATATTGTTGAATATGACAGGTAAAGCAACTGTGAGGGCAAACTAGAATTAGTAGTGAGAAACTGCTAAAGCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR-3UTR TCA 90 bp CTCCTGCCTTCTAGCAGGCTGGCTCTGCTAAAATCTCCCTTTGTGGTCACTGTGAGCATGGGTCAGTTTTaGCAGGGACTTGTCCGTGGA +
Preference number: 2 (lower is better)
Translates to: LLPSSRLALLKSPFVVTVSMGQF*QGLVRG
Trigger: TCCACGGACAAGTCCCTGTCAAAACTGACCCATGCT...CACAGTGACCACAAAGGGAGATTTTAGCAGAGCCAGCCTGCTAGAAGGCAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR CAA 90 bp CAGAGCAGCACACTGACATTCCACCGGCGTAGCTTTCCGTGCTTCTaGGGCATCACACTTCTCCAGACAGGCTTTCTTTTCCCTTTGTTT +
Preference number: 2 (lower is better)
Translates to: QSSTLTFHRRSFPCF*GITLLQTGFLFPLF
Trigger: AAACAAAGGGAAAAGAAAGCCTGTCTGGAGAAGTGTGATGCCCAAGAAGCACGGAAAGCTACGCCGGTGGAATGTCAGTGTGCTGCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
3UTR-3UTR GCA 90 bp CTCCTGCCTTCTAGCAGGCTGGCTCTGCTAAAATCTCCCTTTGTGGTCACTGTGACTTGTCCGTGGAAGTaGTGTCTGAGTGATCCACTT +
Preference number: 2 (lower is better)
Translates to: LLPSSRLALLKSPFVVTVTCPWK*CLSDPL
Trigger: AAGTGGATCACTCAGACAGCACTTCCACGGACAAGT...CACAGTGACCACAAAGGGAGATTTTAGCAGAGCCAGCCTGCTAGAAGGCAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR CAA 90 bp AAGGGGACAGGAGAGGTGCTTGTTCTTAAGTTCCAGGAGGCCCACTaGAACGTAATGTCCACATTCAACTGGATTGGCTTATGTGCACGG +
Preference number: 2 (lower is better)
Translates to: KGTGEVLVLKFQEAH*NVMSTFNWIGLCAR
Trigger: CCGTGCACATAAGCCAATCCAGTTGAATGTGGACATTACGTTCAAGTGGGCCTCCTGGAACTTAAGAACAAGCACCTCTCCTGTCCCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR-3UTR TCA 90 bp TCTTGGAAACCTGAAACTTCCCAGAGAACCCTGAGCATGGGGCTAAAGCCAGCAAGTGTTCTCAGCTCTTaGAGTGTGATGACTGAGCTC +
Preference number: 2 (lower is better)
Translates to: SWKPETSQRTLSMGLKPASVLSS*SVMTEL
Trigger: GAGCTCAGTCATCACACTTCAAGAGCTGAGAACACT...TGCTGGCTTTAGCCCCATGCTCAGGGTTCTCTGGGAAGTTTCAGGTTTCCAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR-3UTR CCA 90 bp CCTTCTAGCAGGCTGGCTCTGCTAAAATCTCCCTTTGTGGTCACTGTGCTATCTGCTTTCCGTGCTTCTTaGGCATCACACTTCTCCAGA +
Preference number: 2 (lower is better)
Translates to: PSSRLALLKSPFVVTVLSAFRAS*ASHFSR
Trigger: TCTGGAGAAGTGTGATGCCCAAGAAGCACGGAAAGC...AGATAGCACAGTGACCACAAAGGGAGATTTTAGCAGAGCCAGCCTGCTAGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR-3UTR TCA 90 bp CTCCTGCCTTCTAGCAGGCTGGCTCTGCTAAAATCTCCCTTTGTGGTCACTGTGTGGTTGAAATTTCACTaGAAAAGGAAACGATGCTGC +
Preference number: 2 (lower is better)
Translates to: LLPSSRLALLKSPFVVTVWLKFH*KRKRCC
Trigger: GCAGCATCGTTTCCTTTTTCAGTGAAATTTCAACCA...CACAGTGACCACAAAGGGAGATTTTAGCAGAGCCAGCCTGCTAGAAGGCAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR-3UTR CCA 90 bp CTCCTGCCTTCTAGCAGGCTGGCTCTGCTAAAATCTCCCTTTGTGGTCACTGTGCCTAACTATGAGGTGTaGTATATGAGAGCTAAACTC +
Preference number: 2 (lower is better)
Translates to: LLPSSRLALLKSPFVVTVPNYEV*YMRAKL
Trigger: GAGTTTAGCTCTCATATACCACACCTCATAGTTAGG...CACAGTGACCACAAAGGGAGATTTTAGCAGAGCCAGCCTGCTAGAAGGCAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR-3UTR TCA 90 bp CCTTCTAGCAGGCTGGCTCTGCTAAAATCTCCCTTTGTGGTCACTGTGCTATCTACCTTATCAATAACCTaGTGGACGGGAATGATTGAC +
Preference number: 2 (lower is better)
Translates to: PSSRLALLKSPFVVTVLSTLSIT*WTGMID
Trigger: GTCAATCATTCCCGTCCATCAGGTTATTGATAAGGT...AGATAGCACAGTGACCACAAAGGGAGATTTTAGCAGAGCCAGCCTGCTAGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR-3UTR TCA 90 bp CCTTCTAGCAGGCTGGCTCTGCTAAAATCTCCCTTTGTGGTCACTGTGCTATCTTTGAAGTGTGATGACTaGGCTCCACCATGGAAATAT +
Preference number: 2 (lower is better)
Translates to: PSSRLALLKSPFVVTVLSLKCDD*APPWKY
Trigger: ATATTTCCATGGTGGAGCTCAGTCATCACACTTCAA...AGATAGCACAGTGACCACAAAGGGAGATTTTAGCAGAGCCAGCCTGCTAGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR-3UTR TCA 90 bp GGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCAGTGTTCTCAGCTCTTaGAGTGTGATGACTGAGCTC +
Preference number: 2 (lower is better)
Translates to: GNDAAIFIENSTGTEPVSSVLSS*SVMTEL
Trigger: GAGCTCAGTCATCACACTTCAAGAGCTGAGAACACT...GCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
3UTR-3UTR TCA 90 bp CACTCTTCTGAGGAGGCAAATGAGAGCCACAGACTTGTAACTGAAGGCAAAATTGAAGTGCTGTCTGAGTaGTCCACTTTTGTTGAAGGA +
Preference number: 2 (lower is better)
Translates to: HSSEEANESHRLVTEGKIEVLSE*STFVEG
Trigger: TCCTTCAACAAAAGTGGATCACTCAGACAGCACTTC...AATTTTGCCTTCAGTTACAAGTCTGTGGCTCTCATTTGCCTCCTCAGAAGAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR-3UTR TCA 90 bp GTTTGCCCTCACAGTTGCTTTACCTGTCATATTCAACAATATCACTACAGAAAATACAGAGCAGCACACTaGCATTCCACCGGCGTAGCT +
Preference number: 2 (lower is better)
Translates to: VCPHSCFTCHIQQYHYRKYRAAH*HSTGVA
Trigger: AGCTACGCCGGTGGAATGTCAGTGTGCTGCTCTGTA...TTTTCTGTAGTGATATTGTTGAATATGACAGGTAAAGCAACTGTGAGGGCAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR-3UTR GCA 90 bp AAGCCTAACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGCAGTCCTCTAAGCTCTaGAGTTCCCTACAGAGCAGC +
Preference number: 2 (lower is better)
Translates to: KPNYEVWYMRAKLKFLLGQSSKL*SSLQSS
Trigger: GCTGCTCTGTAGGGAACTGCAGAGCTTAGAGGACTG...CCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTTAGGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
3UTR-3UTR TCA 90 bp CACTCTTCTGAGGAGGCAAATGAGAGCCACAGACTTGTAACTGAAGGCAAAATTTTGTATGCCACAGTCTaGTCCATGCATATTCCACTA +
Preference number: 2 (lower is better)
Translates to: HSSEEANESHRLVTEGKILYATV*SMHIPL
Trigger: TAGTGGAATATGCATGGATCAGACTGTGGCATACAA...AATTTTGCCTTCAGTTACAAGTCTGTGGCTCTCATTTGCCTCCTCAGAAGAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR-3UTR CCA 90 bp AACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGTTCTCTGTTCTCCACCAGCATaGGTCAGTTTTGACAGGGAC +
Preference number: 2 (lower is better)
Translates to: NYEVWYMRAKLKFLLGVLCSPPA*VSFDRD
Trigger: GTCCCTGTCAAAACTGACCCATGCTGGTGGAGAACA...GAGAACCCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR-3UTR GCA 90 bp ACTGAAAAAGGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAACAGTCCTCTAAGCTCTaGAGTTCCCTACAGAGCAGC +
Preference number: 2 (lower is better)
Translates to: TEKGNDAAIFIENSTGTEQSSKL*SSLQSS
Trigger: GCTGCTCTGTAGGGAACTGCAGAGCTTAGAGGACTG...TTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCCTTTTTCAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
3UTR-3UTR CCA 90 bp ATAAATATGTACAGAAGAGACATTGCCAAAGGTACTCTACACAGTAAGAAACAGCCTATATGTATCCTGTaGTACAATGAGCAGCCTGCT +
Preference number: 2 (lower is better)
Translates to: INMYRRDIAKGTLHSKKQPICIL*YNEQPA
Trigger: AGCAGGCTGCTCATTGTACCACAGGATACATATAGG...CTGTTTCTTACTGTGTAGAGTACCTTTGGCAATGTCTCTTCTGTACATATTTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR-3UTR TCA 90 bp GTTTGCCCTCACAGTTGCTTTACCTGTCATATTCAACAATATCACTACAGAAAAGTGGCTGAAGGCATCTaGCAGGATGATATTTTTATA +
Preference number: 2 (lower is better)
Translates to: VCPHSCFTCHIQQYHYRKVAEGI*QDDIFI
Trigger: TATAAAAATATCATCCTGTCAGATGCCTTCAGCCAC...TTTTCTGTAGTGATATTGTTGAATATGACAGGTAAAGCAACTGTGAGGGCAAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR TCA 72 bp GTCAGGATTGGGGCTGTTTTACAGCTGTGTGTAGCCTaGACTCTGGGTCTCCCATGGAGCCCTGTCCCACTC +
Preference number: 3 (lower is better)
Translates to: VRIGAVLQLCVA*TLGLPWSPVPL
Trigger: GAGTGGGACAGGGCTCCATGGGAGACCCAGAGTTCAGGCTACACACAGCTGTAAAACAGCCCCAATCCTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR-3UTR CAA 90 bp CTCCTGCCTTCTAGCAGGCTGGCTCTGCTAAAATCTCCCTTTGTGGTCACTGTGATAGGACTCCACCACTaGGGCTCAACCTACACCCTC +
Preference number: 3 (lower is better)
Translates to: LLPSSRLALLKSPFVVTVIGLHH*GSTYTL
Trigger: GAGGGTGTAGGTTGAGCCCAAGTGGTGGAGTCCTAT...CACAGTGACCACAAAGGGAGATTTTAGCAGAGCCAGCCTGCTAGAAGGCAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR CCA 72 bp TGGACGGGAATGATTGACGTCTGTTCTCCACCAGCATaGGTCAGTTTTGACAGGGACTTGTCCGTGGAAGTG +
Preference number: 3 (lower is better)
Translates to: WTGMIDVCSPPA*VSFDRDLSVEV
Trigger: CACTTCCACGGACAAGTCCCTGTCAAAACTGACCCATGCTGGTGGAGAACAGACGTCAATCATTCCCGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR CCA 72 bp GCTAAACCTGGAACACATCACAGTGAAAGGAGAGGGTaGGAAGCGAATAGCCAGAGTCAGGATTGGGGCTGT +
Preference number: 3 (lower is better)
Translates to: AKPGTHHSERRG*EANSQSQDWGC
Trigger: ACAGCCCCAATCCTGACTCTGGCTATTCGCTTCCCACCCTCTCCTTTCACTGTGATGTGTTCCAGGTTTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR GCA 72 bp GCTTCCCTAACAAGATGCAGTCAGTCCTCTAAGCTCTaGAGTTCCCTACAGAGCAGCACACTGACATTCCAC +
Preference number: 3 (lower is better)
Translates to: ASLTRCSQSSKL*SSLQSSTLTFH
Trigger: GTGGAATGTCAGTGTGCTGCTCTGTAGGGAACTGCAGAGCTTAGAGGACTGACTGCATCTTGTTAGGGAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
3UTR CCA 72 bp CACCAGCATGGGTCAGTTTTGACAGGGACTTGTCCGTaGAAGTGCTGTCTGAGTGATCCACTTTTGTTGAAG +
Preference number: 3 (lower is better)
Translates to: HQHGSVLTGTCP*KCCLSDPLLLK
Trigger: CTTCAACAAAAGTGGATCACTCAGACAGCACTTCCACGGACAAGTCCCTGTCAAAACTGACCCATGCTGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR CCA 72 bp TGCTTAATGGGAACTCTCATCCCTCTAATGAGCCTATaGACCTATGTGCACACAGAAGGGGACAGGAGAGGT +
Preference number: 3 (lower is better)
Translates to: CLMGTLIPLMSL*TYVHTEGDRRG
Trigger: ACCTCTCCTGTCCCCTTCTGTGTGCACATAGGTCCATAGGCTCATTAGAGGGATGAGAGTTCCCATTAAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR TCA 72 bp CTGTATTCTTGCCGGGCTCAGAGTGTTCTCAGCTCTTaGAGTGTGATGACTGAGCTCCACCATGGAAATATT +
Preference number: 3 (lower is better)
Translates to: LYSCRAQSVLSS*SVMTELHHGNI
Trigger: AATATTTCCATGGTGGAGCTCAGTCATCACACTTCAAGAGCTGAGAACACTCTGAGCCCGGCAAGAATACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
3UTR TCA 72 bp TCACTATCCCTTTCTCCTACATGGCCTACTCCTTTGTaGAAATCAGGCTCAGCAAAGTTCAGGTCTGCCAAG +
Preference number: 3 (lower is better)
Translates to: SLSLSPTWPTPL*KSGSAKFRSAK
Trigger: CTTGGCAGACCTGAACTTTGCTGAGCCTGATTTTCACAAAGGAGTAGGCCATGTAGGAGAAAGGGATAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR GCA 72 bp AGAGAGCTAAGGGGATCTGTTGGCTGTTTCAAAGCCTaGAAGTTCTTCTACATCCTAGCTGAGAATGGCCTA +
Preference number: 3 (lower is better)
Translates to: RELRGSVGCFKA*KFFYILAENGL
Trigger: TAGGCCATTCTCAGCTAGGATGTAGAAGAACTTGCAGGCTTTGAAACAGCCAACAGATCCCCTTAGCTCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR CCA 72 bp CTGCTAAAATCTCCCTTTGTGGTCACTGTGCTATCTTaGAAACCTGAAACTTCCCAGAGAACCCTGAGCATG +
Preference number: 3 (lower is better)
Translates to: LLKSPFVVTVLS*KPETSQRTLSM
Trigger: CATGCTCAGGGTTCTCTGGGAAGTTTCAGGTTTCCAAGATAGCACAGTGACCACAAAGGGAGATTTTAGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR TCA 72 bp AGGCCACTGCCAAGCCTAACTATGAGGTGTGGTATATaGGAGCTAAACTCAAATTTCTTCTTGGGGTTCTCC +
Preference number: 3 (lower is better)
Translates to: RPLPSLTMRCGI*ELNSNFFLGFS
Trigger: GGAGAACCCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTTAGGCTTGGCAGTGGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
3UTR TCA 72 bp AGGTCTGCCAAGATGGCAGTCCAGGTTGCTAAAGAATaGATGGCAATAAAAACCCCCATTGCCACATGCTAT +
Preference number: 3 (lower is better)
Translates to: RSAKMAVQVAKE*MAIKTPIATCY
Trigger: ATAGCATGTGGCAATGGGGGTTTTTATTGCCATTCATTCTTTAGCAACCTGGACTGCCATCTTGGCAGACCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR TCA 72 bp CTGTTTCAAAGCCTGCAAGTTCTTCTACATCCTAGCTaGGAATGGCCTACTTTCTGCACAGATGTTCCATTC +
Preference number: 3 (lower is better)
Translates to: LFQSLQVLLHPS*EWPTFCTDVPF
Trigger: GAATGGAACATCTGTGCAGAAAGTAGGCCATTCTCAGCTAGGATGTAGAAGAACTTGCAGGCTTTGAAACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR CCA 72 bp AAGAGTCAGGCCACTGCCAAGCCTAACTATGAGGTGTaGTATATGAGAGCTAAACTCAAATTTCTTCTTGGG +
Preference number: 3 (lower is better)
Translates to: KSQATAKPNYEV*YMRAKLKFLLG
Trigger: CCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTTAGGCTTGGCAGTGGCCTGACTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
3UTR-3UTR CAA 90 bp CACTCTTCTGAGGAGGCAAATGAGAGCCACAGACTTGTAACTGAAGGCAAAATTCTTAGGCTGCGTGTCTaGAGATATTTGAGATTCACA +
Preference number: 3 (lower is better)
Translates to: HSSEEANESHRLVTEGKILRLRV*RYLRFT
Trigger: TGTGAATCTCAAATATCTCAAGACACGCAGCCTAAG...AATTTTGCCTTCAGTTACAAGTCTGTGGCTCTCATTTGCCTCCTCAGAAGAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR-3UTR CAA 90 bp GTTTGCCCTCACAGTTGCTTTACCTGTCATATTCAACAATATCACTACAGAAAAAACAGTGAGAGGCCATaGCATGGAGTGCTTAATGGG +
Preference number: 3 (lower is better)
Translates to: VCPHSCFTCHIQQYHYRKNSERP*HGVLNG
Trigger: CCCATTAAGCACTCCATGCAATGGCCTCTCACTGTT...TTTTCTGTAGTGATATTGTTGAATATGACAGGTAAAGCAACTGTGAGGGCAAAC
42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR CCA 72 bp GTCTATCGAGATTATATTCTACCTATATGTATCCTGTaGTACAATGAGCAGCCTGCTAATATAAGTCTCCCT +
Preference number: 3 (lower is better)
Translates to: VYRDYILPICIL*YNEQPANISLP
Trigger: AGGGAGACTTATATTAGCAGGCTGCTCATTGTACCACAGGATACATATAGGTAGAATATAATCTCGATAGAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
3UTR CCA 72 bp AATGAGAGCCACAGACTTGTAACTGAAGGCAAAATTTaGACCAGTCGTTTAAATCCACTTGCAAATATGTTT +
Preference number: 3 (lower is better)
Translates to: NESHRLVTEGKI*TSRLNPLANMF
Trigger: AAACATATTTGCAAGTGGATTTAAACGACTGGTCCAAATTTTGCCTTCAGTTACAAGTCTGTGGCTCTCATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR GCA 90 bp AGATGCAGTCAGTCCTCTAAGCTCTGCAGTTCCCTACAGAGCAGCACACTGACAGCCAGGAGGAAGAAGTaGAACAGGGCAGCCACAGCC +
Preference number: 4 (lower is better)
Translates to: RCSQSSKLCSSLQSSTLTARRKK*NRAATA
Trigger: GGCTGTGGCTGCCCTGTTGCACTTCTTCCTCCTGGC...TGTCAGTGTGCTGCTCTGTAGGGAACTGCAGAGCTTAGAGGACTGACTGCATCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR GCA 90 bp CTCCTGCCTTCTAGCAGGCTGGCTCTGCTAAAATCTCCCTTTGTGGTCACTGTGCTCTCAGGGTCCGGTTaGTTCTCTTTCCATTCCTCC +
Preference number: 4 (lower is better)
Translates to: LLPSSRLALLKSPFVVTVLSGSG*FSFHSS
Trigger: GGAGGAATGGAAAGAGAAGCAACCGGACCCTGAGAG...CACAGTGACCACAAAGGGAGATTTTAGCAGAGCCAGCCTGCTAGAAGGCAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR TCA 90 bp TGGGAAGCGAATAGCCAGAGTCAGGATTGGGGCTGTTTTACAGCTGTGTGTAGCGAGAGTCCCCAGTTCTaGACAGTTTGTCAGCTCTGC +
Preference number: 4 (lower is better)
Translates to: WEANSQSQDWGCFTAVCSESPQF*TVCQLC
Trigger: GCAGAGCTGACAAACTGTTCAGAACTGGGGACTCTC...GCTACACACAGCTGTAAAACAGCCCCAATCCTGACTCTGGCTATTCGCTTCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR TCA 90 bp AGATGCAGTCAGTCCTCTAAGCTCTGCAGTTCCCTACAGAGCAGCACACTGACAAGGGCCCCAGAAGGTTaGTGTTCCATTAGAAAGGCA +
Preference number: 4 (lower is better)
Translates to: RCSQSSKLCSSLQSSTLTRAPEG*CSIRKA
Trigger: TGCCTTTCTAATGGAACATCAACCTTCTGGGGCCCT...TGTCAGTGTGCTGCTCTGTAGGGAACTGCAGAGCTTAGAGGACTGACTGCATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp GCCCTCTGTAGGGTCTCATCCACTCTGATCAGAGGGCTCGGTGCAAACAGTTTTAAGGCACAGATAGGATaGTGCACTTCCTGTGTTCTG +
Preference number: 4 (lower is better)
Translates to: ALCRVSSTLIRGLGANSFKAQIG*CTSCVL
Trigger: CAGAACACAGGAAGTGCATCATCCTATCTGTGCCTT...AAAACTGTTTGCACCGAGCCCTCTGATCAGAGTGGATGAGACCCTACAGAGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR TCA 90 bp GGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCGCAGGAAGGTCAGGCTaGCCACACTGCGCAGGTTTC +
Preference number: 4 (lower is better)
Translates to: GNDAAIFIENSTGTEPVSAGRSG*PHCAGF
Trigger: GAAACCTGCGCAGTGTGGTCAGCCTGACCTTCCTGC...GCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR GCA 90 bp CTCCTGCCTTCTAGCAGGCTGGCTCTGCTAAAATCTCCCTTTGTGGTCACTGTGGAGCTTGGGTTGAGATaGTCCAAAAGTCATTGTGCC +
Preference number: 4 (lower is better)
Translates to: LLPSSRLALLKSPFVVTVELGLR*SKSHCA
Trigger: GGCACAATGACTTTTGGAGCATCTCAACCCAAGCTC...CACAGTGACCACAAAGGGAGATTTTAGCAGAGCCAGCCTGCTAGAAGGCAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR GCA 90 bp AGATGCAGTCAGTCCTCTAAGCTCTGCAGTTCCCTACAGAGCAGCACACTGACAGTTTGTCAGCTCTGCTaGAGGAAGCTGGATCAGGTA +
Preference number: 4 (lower is better)
Translates to: RCSQSSKLCSSLQSSTLTVCQLC*RKLDQV
Trigger: TACCTGATCCAGCTTCCTGCAGCAGAGCTGACAAAC...TGTCAGTGTGCTGCTCTGTAGGGAACTGCAGAGCTTAGAGGACTGACTGCATCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
3UTR CAA 72 bp ACACTGACATTCCACCGGCGTAGCTTTCCGTGCTTCTaGGGCATCACACTTCTCCAGACAGGCTTTCTTTTC +
Preference number: 4 (lower is better)
Translates to: TLTFHRRSFPCF*GITLLQTGFLF
Trigger: GAAAAGAAAGCCTGTCTGGAGAAGTGTGATGCCCAAGAAGCACGGAAAGCTACGCCGGTGGAATGTCAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp GCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCATCCAAAGACACGCAGGAAGGTCAGGCTaGCCACACTGCGCAGGTTTC +
Preference number: 4 (lower is better)
Translates to: AIFIENSTGTEPVSIQRHAGRSG*PHCAGF
Trigger: GAAACCTGCGCAGTGTGGTCAGCCTGACCTTCCTGC...GTGTCTTTGGATGCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR GCA 90 bp GCCCTCTGTAGGGTCTCATCCACTCTGATCAGAGGGCTCGGTGCAAACAGTTTTCTTGAAAAGGACACATaGATCTCATTCACGCTGGAG +
Preference number: 4 (lower is better)
Translates to: ALCRVSSTLIRGLGANSFLEKDT*ISFTLE
Trigger: CTCCAGCGTGAATGAGATGCATGTGTCCTTTTCAAG...AAAACTGTTTGCACCGAGCCCTCTGATCAGAGTGGATGAGACCCTACAGAGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR GCA 90 bp CAGTCTAAGAAGTCCTGTATTCTTGCCGGGCTCAGAGTGTTCTCAGCTCTTGAACTCTCAGGGTCCGGTTaGTTCTCTTTCCATTCCTCC +
Preference number: 4 (lower is better)
Translates to: QSKKSCILAGLRVFSALELSGSG*FSFHSS
Trigger: GGAGGAATGGAAAGAGAAGCAACCGGACCCTGAGAG...TTCAAGAGCTGAGAACACTCTGAGCCCGGCAAGAATACAGGACTTCTTAGACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp CAGTCTAAGAAGTCCTGTATTCTTGCCGGGCTCAGAGTGTTCTCAGCTCTTGAAGCGTCCAAATCAGAGTaGGCAACACATCCTGAGGTG +
Preference number: 4 (lower is better)
Translates to: QSKKSCILAGLRVFSALEASKSE*ATHPEV
Trigger: CACCTCAGGATGTGTTGCCCACTCTGATTTGGACGC...TTCAAGAGCTGAGAACACTCTGAGCCCGGCAAGAATACAGGACTTCTTAGACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR GCA 90 bp AGATGCAGTCAGTCCTCTAAGCTCTGCAGTTCCCTACAGAGCAGCACACTGACAAGTCACCACCTTCATTaGCAACTTTGGAGGCTTCAA +
Preference number: 4 (lower is better)
Translates to: RCSQSSKLCSSLQSSTLTSHHLH*QLWRLQ
Trigger: TTGAAGCCTCCAAAGTTGGCAATGAAGGTGGTGACT...TGTCAGTGTGCTGCTCTGTAGGGAACTGCAGAGCTTAGAGGACTGACTGCATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp CAGTCTAAGAAGTCCTGTATTCTTGCCGGGCTCAGAGTGTTCTCAGCTCTTGAACATTGTGCCAGTCTATaGCATTCCCAGACACACTAC +
Preference number: 4 (lower is better)
Translates to: QSKKSCILAGLRVFSALEHCASL*HSQTHY
Trigger: GTAGTGTGTCTGGGAATGTCATAGACTGGCACAATG...TTCAAGAGCTGAGAACACTCTGAGCCCGGCAAGAATACAGGACTTCTTAGACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp GGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCGAGAGTCCCCAGTTCTaGACAGTTTGTCAGCTCTGC +
Preference number: 4 (lower is better)
Translates to: GNDAAIFIENSTGTEPVSESPQF*TVCQLC
Trigger: GCAGAGCTGACAAACTGTTCAGAACTGGGGACTCTC...GCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp TGGGAAGCGAATAGCCAGAGTCAGGATTGGGGCTGTTTTACAGCTGTGTGTAGCGCAGACCCCAGCCTATaGTGCAGAATTTTAGAATAT +
Preference number: 4 (lower is better)
Translates to: WEANSQSQDWGCFTAVCSADPSL*CRILEY
Trigger: ATATTCTAAAATTCTGCATCATAGGCTGGGGTCTGC...GCTACACACAGCTGTAAAACAGCCCCAATCCTGACTCTGGCTATTCGCTTCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR GCA 90 bp AACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGTTCTCGCCAGGAGGAAGAAGTaGAACAGGGCAGCCACAGCC +
Preference number: 4 (lower is better)
Translates to: NYEVWYMRAKLKFLLGVLARRKK*NRAATA
Trigger: GGCTGTGGCTGCCCTGTTGCACTTCTTCCTCCTGGC...GAGAACCCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp AGATGCAGTCAGTCCTCTAAGCTCTGCAGTTCCCTACAGAGCAGCACACTGACAGCCATTCTGCTACTTTaGTCTGCACTTTTACTTCAG +
Preference number: 4 (lower is better)
Translates to: RCSQSSKLCSSLQSSTLTAILLL*SALLLQ
Trigger: CTGAAGTAAAAGTGCAGACCAAAGTAGCAGAATGGC...TGTCAGTGTGCTGCTCTGTAGGGAACTGCAGAGCTTAGAGGACTGACTGCATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp TGGGAAGCGAATAGCCAGAGTCAGGATTGGGGCTGTTTTACAGCTGTGTGTAGCTGCCCATCACCAGTTTaGTTTAAAATCTCATTGGCC +
Preference number: 4 (lower is better)
Translates to: WEANSQSQDWGCFTAVCSCPSPV*FKISLA
Trigger: GGCCAATGAGATTTTAAACCAAACTGGTGATGGGCA...GCTACACACAGCTGTAAAACAGCCCCAATCCTGACTCTGGCTATTCGCTTCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR CCA 90 bp GGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCGCGTCCAAATCAGAGTaGGCAACACATCCTGAGGTG +
Preference number: 4 (lower is better)
Translates to: GNDAAIFIENSTGTEPVSASKSE*ATHPEV
Trigger: CACCTCAGGATGTGTTGCCCACTCTGATTTGGACGC...GCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp CCTTCTAGCAGGCTGGCTCTGCTAAAATCTCCCTTTGTGGTCACTGTGCTATCTGATTCATCAGGATTTTaGAGGGATAATCCCTGCGCA +
Preference number: 4 (lower is better)
Translates to: PSSRLALLKSPFVVTVLSDSSGF*RDNPCA
Trigger: TGCGCAGGGATTATCCCTCCAAAATCCTGATGAATC...AGATAGCACAGTGACCACAAAGGGAGATTTTAGCAGAGCCAGCCTGCTAGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR TCA 90 bp CAGTCTAAGAAGTCCTGTATTCTTGCCGGGCTCAGAGTGTTCTCAGCTCTTGAAGGCAAAATGACCTTTTaGTTCCTCAAGGACACAGCA +
Preference number: 4 (lower is better)
Translates to: QSKKSCILAGLRVFSALEGKMTF*FLKDTA
Trigger: TGCTGTGTCCTTGAGGAATCAAAAGGTCATTTTGCC...TTCAAGAGCTGAGAACACTCTGAGCCCGGCAAGAATACAGGACTTCTTAGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp CCTTCTAGCAGGCTGGCTCTGCTAAAATCTCCCTTTGTGGTCACTGTGCTATCTTGTTCACGATCCGTTTaGCCTTTTCTACAATGCTGT +
Preference number: 4 (lower is better)
Translates to: PSSRLALLKSPFVVTVLSCSRSV*PFLQCC
Trigger: ACAGCATTGTAGAAAAGGTCAAACGGATCGTGAACA...AGATAGCACAGTGACCACAAAGGGAGATTTTAGCAGAGCCAGCCTGCTAGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR GCA 90 bp GCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCATCCAAAGACACGCCGAGGTGAGGTTCTaGCCATCACCAGTTTGGTTT +
Preference number: 4 (lower is better)
Translates to: AIFIENSTGTEPVSIQRHAEVRF*PSPVWF
Trigger: AAACCAAACTGGTGATGGGCAGAACCTCACCTCGGC...GTGTCTTTGGATGCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR GCA 90 bp GCTAAACTCAAATTTCTTCTTGGGGTTCTCCTCTCAAGGCCTATAATTTTAACGCAAACCCCCACGTCATaGCAAGCAGGAAGGTCAGGC +
Preference number: 4 (lower is better)
Translates to: AKLKFLLGVLLSRPIILTQTPTS*QAGRSG
Trigger: GCCTGACCTTCCTGCTTGGCATGACGTGGGGGTTTG...CGTTAAAATTATAGGCCTTGAGAGGAGAACCCCAAGAAGAAATTTGAGTTTAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR GCA 90 bp AAGCCTAACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGCAAACCCCCACGTCATaGCAAGCAGGAAGGTCAGGC +
Preference number: 4 (lower is better)
Translates to: KPNYEVWYMRAKLKFLLGQTPTS*QAGRSG
Trigger: GCCTGACCTTCCTGCTTGGCATGACGTGGGGGTTTG...CCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTTAGGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp CCGATTCTGATGAGTTTGATTCAATTACAGTCTAAGAAGTCCTGTATTCTTGCCGAACAGCAGGGCGCTTaGCTTCAGTCTCCAAGGGCA +
Preference number: 4 (lower is better)
Translates to: PILMSLIQLQSKKSCILAEQQGA*LQSPRA
Trigger: TGCCCTTGGAGACTGAAGCCAAGCGCCCTGCTGTTC...GGCAAGAATACAGGACTTCTTAGACTGTAATTGAATCAAACTCATCAGAATCGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp AACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGTTCTCGAACAGCAGGGCGCTTaGCTTCAGTCTCCAAGGGCA +
Preference number: 4 (lower is better)
Translates to: NYEVWYMRAKLKFLLGVLEQQGA*LQSPRA
Trigger: TGCCCTTGGAGACTGAAGCCAAGCGCCCTGCTGTTC...GAGAACCCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp CAGTCTAAGAAGTCCTGTATTCTTGCCGGGCTCAGAGTGTTCTCAGCTCTTGAATTGCAGCTGAGAAAATaGCAGATATTCCGCACCCAA +
Preference number: 4 (lower is better)
Translates to: QSKKSCILAGLRVFSALELQLRK*QIFRTQ
Trigger: TTGGGTGCGGAATATCTGCCATTTTCTCAGCTGCAA...TTCAAGAGCTGAGAACACTCTGAGCCCGGCAAGAATACAGGACTTCTTAGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
3UTR CAA 72 bp GGAGAGGTGCTTGTTCTTAAGTTCCAGGAGGCCCACTaGAACGTAATGTCCACATTCAACTGGATTGGCTTA +
Preference number: 4 (lower is better)
Translates to: GEVLVLKFQEAH*NVMSTFNWIGL
Trigger: TAAGCCAATCCAGTTGAATGTGGACATTACGTTCAAGTGGGCCTCCTGGAACTTAAGAACAAGCACCTCTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR TCA 90 bp CAGTCTAAGAAGTCCTGTATTCTTGCCGGGCTCAGAGTGTTCTCAGCTCTTGAACCAATTCTGAAAGGTTaGATTGAGCCATTCTGCTAC +
Preference number: 4 (lower is better)
Translates to: QSKKSCILAGLRVFSALEPILKG*IEPFCY
Trigger: GTAGCAGAATGGCTCAATTCAACCTTTCAGAATTGG...TTCAAGAGCTGAGAACACTCTGAGCCCGGCAAGAATACAGGACTTCTTAGACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp CACTCTTCTGAGGAGGCAAATGAGAGCCACAGACTTGTAACTGAAGGCAAAATTGAGTGGAGCCGAGGGTaGTGTCAATGTTTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: HSSEEANESHRLVTEGKIEWSRG*CQCFLL
Trigger: AAGAAGAAAACATTGACATCACCCTCGGCTCCACTC...AATTTTGCCTTCAGTTACAAGTCTGTGGCTCTCATTTGCCTCCTCAGAAGAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR TCA 90 bp AGATGCAGTCAGTCCTCTAAGCTCTGCAGTTCCCTACAGAGCAGCACACTGACAAACCTTGTAATGAATTaGAGATGGAGAAGAGGTACA +
Preference number: 4 (lower is better)
Translates to: RCSQSSKLCSSLQSSTLTNLVMN*RWRRGT
Trigger: TGTACCTCTTCTCCATCTTCAATTCATTACAAGGTT...TGTCAGTGTGCTGCTCTGTAGGGAACTGCAGAGCTTAGAGGACTGACTGCATCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp ACTCAAATTTCTTCTTGGGGTTCTCCTCTCAAGGCCTATAATTTTAACGCCTTCAGCATGGGTCAGTTTTaGCAGGGACTTGTCCGTGGA +
Preference number: 4 (lower is better)
Translates to: TQISSWGSPLKAYNFNAFSMGQF*QGLVRG
Trigger: TCCACGGACAAGTCCCTGTCAAAACTGACCCATGCT...GAAGGCGTTAAAATTATAGGCCTTGAGAGGAGAACCCCAAGAAGAAATTTGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000238680.2
CDS-3UTR GCA 90 bp GGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCAGGCAAAATCACAGATaGCAGTGGATCTGTCTGTCC +
Preference number: 4 (lower is better)
Translates to: GNDAAIFIENSTGTEPVSRQNHR*QWICLS
Trigger: GGACAGACAGATCCACTGGCATCTGTGATTTTGCCT...GCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR GCA 90 bp GGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCTTCCTCCCACAGATCTaGACCATGACCACAATGAAC +
Preference number: 4 (lower is better)
Translates to: GNDAAIFIENSTGTEPVSFLPQI*TMTTMN
Trigger: GTTCATTGTGGTCATGGTGCAGATCTGTGGGAGGAA...GCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp GCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCATCCAAAGACACTGTTCTCCACCAGCATaGGTCAGTTTTGACAGGGAC +
Preference number: 4 (lower is better)
Translates to: AIFIENSTGTEPVSIQRHCSPPA*VSFDRD
Trigger: GTCCCTGTCAAAACTGACCCATGCTGGTGGAGAACA...GTGTCTTTGGATGCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp ACTCAAATTTCTTCTTGGGGTTCTCCTCTCAAGGCCTATAATTTTAACGCCTTCTGTAAGGGACTCGTCTaGGTAGGAGAAAGCTGTCCA +
Preference number: 4 (lower is better)
Translates to: TQISSWGSPLKAYNFNAFCKGLV*VGESCP
Trigger: TGGACAGCTTTCTCCTACTCAGACGAGTCCCTTACA...GAAGGCGTTAAAATTATAGGCCTTGAGAGGAGAACCCCAAGAAGAAATTTGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp GCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCATCCAAAGACACCATTGTGCCAGTCTATaGCATTCCCAGACACACTAC +
Preference number: 4 (lower is better)
Translates to: AIFIENSTGTEPVSIQRHHCASL*HSQTHY
Trigger: GTAGTGTGTCTGGGAATGTCATAGACTGGCACAATG...GTGTCTTTGGATGCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp ACTCAAATTTCTTCTTGGGGTTCTCCTCTCAAGGCCTATAATTTTAACGCCTTCAGGGCCCCAGAAGGTTaGTGTTCCATTAGAAAGGCA +
Preference number: 4 (lower is better)
Translates to: TQISSWGSPLKAYNFNAFRAPEG*CSIRKA
Trigger: TGCCTTTCTAATGGAACATCAACCTTCTGGGGCCCT...GAAGGCGTTAAAATTATAGGCCTTGAGAGGAGAACCCCAAGAAGAAATTTGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp GCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCATCCAAAGACACGAGTGGAGCCGAGGGTaGTGTCAATGTTTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: AIFIENSTGTEPVSIQRHEWSRG*CQCFLL
Trigger: AAGAAGAAAACATTGACATCACCCTCGGCTCCACTC...GTGTCTTTGGATGCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR GCA 90 bp CCGATTCTGATGAGTTTGATTCAATTACAGTCTAAGAAGTCCTGTATTCTTGCCGCCGAGGTGAGGTTCTaGCCATCACCAGTTTGGTTT +
Preference number: 4 (lower is better)
Translates to: PILMSLIQLQSKKSCILAAEVRF*PSPVWF
Trigger: AAACCAAACTGGTGATGGGCAGAACCTCACCTCGGC...GGCAAGAATACAGGACTTCTTAGACTGTAATTGAATCAAACTCATCAGAATCGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR GCA 90 bp GCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCATCCAAAGACACAGGCAAAATCACAGATaGCAGTGGATCTGTCTGTCC +
Preference number: 4 (lower is better)
Translates to: AIFIENSTGTEPVSIQRHRQNHR*QWICLS
Trigger: GGACAGACAGATCCACTGGCATCTGTGATTTTGCCT...GTGTCTTTGGATGCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp AGATGCAGTCAGTCCTCTAAGCTCTGCAGTTCCCTACAGAGCAGCACACTGACAGGATCTTTCAGATTCTaGATAGTAATGTTTCCAATG +
Preference number: 4 (lower is better)
Translates to: RCSQSSKLCSSLQSSTLTGSFRF*IVMFPM
Trigger: CATTGGAAACATTACTATCCAGAATCTGAAAGATCC...TGTCAGTGTGCTGCTCTGTAGGGAACTGCAGAGCTTAGAGGACTGACTGCATCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp GCTAAACTCAAATTTCTTCTTGGGGTTCTCCTCTCAAGGCCTATAATTTTAACGCAATGTACATGTGGATaGCTTCCAGCCCCATCCAGG +
Preference number: 4 (lower is better)
Translates to: AKLKFLLGVLLSRPIILTQCTCG*LPAPSR
Trigger: CCTGGATGGGGCTGGAAGCCATCCACATGTACATTG...CGTTAAAATTATAGGCCTTGAGAGGAGAACCCCAAGAAGAAATTTGAGTTTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp CCTTCTAGCAGGCTGGCTCTGCTAAAATCTCCCTTTGTGGTCACTGTGCTATCTTTGAATTGGAGCCAATaGAGCTTGAAGACAAAGATT +
Preference number: 4 (lower is better)
Translates to: PSSRLALLKSPFVVTVLSLNWSQ*SLKTKI
Trigger: AATCTTTGTCTTCAAGCTCCATTGGCTCCAATTCAA...AGATAGCACAGTGACCACAAAGGGAGATTTTAGCAGAGCCAGCCTGCTAGAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR TCA 90 bp GCTAAACTCAAATTTCTTCTTGGGGTTCTCCTCTCAAGGCCTATAATTTTAACGTGTAAGGGACTCGTCTaGGTAGGAGAAAGCTGTCCA +
Preference number: 4 (lower is better)
Translates to: AKLKFLLGVLLSRPIILTCKGLV*VGESCP
Trigger: TGGACAGCTTTCTCCTACTCAGACGAGTCCCTTACA...CGTTAAAATTATAGGCCTTGAGAGGAGAACCCCAAGAAGAAATTTGAGTTTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp GGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCGCCAATGCTAAAATTTaGAGGTGCATTTGTTCCTGG +
Preference number: 4 (lower is better)
Translates to: GNDAAIFIENSTGTEPVSANAKI*RCICSW
Trigger: CCAGGAACAAATGCACCTTCAAATTTTAGCATTGGC...GCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp ACTCAAATTTCTTCTTGGGGTTCTCCTCTCAAGGCCTATAATTTTAACGCCTTCGAACTCCAAAGTGAGTaGAGTGGCTGCACAGACAAA +
Preference number: 4 (lower is better)
Translates to: TQISSWGSPLKAYNFNAFELQSE*SGCTDK
Trigger: TTTGTCTGTGCAGCCACTTCACTCACTTTGGAGTTC...GAAGGCGTTAAAATTATAGGCCTTGAGAGGAGAACCCCAAGAAGAAATTTGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp GGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCACCTTATCAATAACCTaGTGGACGGGAATGATTGAC +
Preference number: 4 (lower is better)
Translates to: GNDAAIFIENSTGTEPVSTLSIT*WTGMID
Trigger: GTCAATCATTCCCGTCCATCAGGTTATTGATAAGGT...GCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238680.2
CDS-3UTR GCA 90 bp AACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGTTCTCGTTTGTCAGCTCTGCTaGAGGAAGCTGGATCAGGTA +
Preference number: 4 (lower is better)
Translates to: NYEVWYMRAKLKFLLGVLVCQLC*RKLDQV
Trigger: TACCTGATCCAGCTTCCTGCAGCAGAGCTGACAAAC...GAGAACCCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR GCA 90 bp ACTCAAATTTCTTCTTGGGGTTCTCCTCTCAAGGCCTATAATTTTAACGCCTTCTGGAGGGATAATCCCTaGGCAGCTTCTCAAAAGCAA +
Preference number: 4 (lower is better)
Translates to: TQISSWGSPLKAYNFNAFWRDNP*AASQKQ
Trigger: TTGCTTTTGAGAAGCTGCGCAGGGATTATCCCTCCA...GAAGGCGTTAAAATTATAGGCCTTGAGAGGAGAACCCCAAGAAGAAATTTGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp CACTCTTCTGAGGAGGCAAATGAGAGCCACAGACTTGTAACTGAAGGCAAAATTGCCATTCTGCTACTTTaGTCTGCACTTTTACTTCAG +
Preference number: 4 (lower is better)
Translates to: HSSEEANESHRLVTEGKIAILLL*SALLLQ
Trigger: CTGAAGTAAAAGTGCAGACCAAAGTAGCAGAATGGC...AATTTTGCCTTCAGTTACAAGTCTGTGGCTCTCATTTGCCTCCTCAGAAGAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR CCA 90 bp CACTCTTCTGAGGAGGCAAATGAGAGCCACAGACTTGTAACTGAAGGCAAAATTAAAGCCAGGCTTGTTTaGACATGGTTGTTTGTAGAC +
Preference number: 4 (lower is better)
Translates to: HSSEEANESHRLVTEGKIKARLV*TWLFVD
Trigger: GTCTACAAACAACCATGTCCAAACAAGCCTGGCTTT...AATTTTGCCTTCAGTTACAAGTCTGTGGCTCTCATTTGCCTCCTCAGAAGAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR CCA 90 bp GGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCAAAGCCAGGCTTGTTTaGACATGGTTGTTTGTAGAC +
Preference number: 4 (lower is better)
Translates to: GNDAAIFIENSTGTEPVSKARLV*TWLFVD
Trigger: GTCTACAAACAACCATGTCCAAACAAGCCTGGCTTT...GCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp GCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCATCCAAAGACACGATTCATCAGGATTTTaGAGGGATAATCCCTGCGCA +
Preference number: 4 (lower is better)
Translates to: AIFIENSTGTEPVSIQRHDSSGF*RDNPCA
Trigger: TGCGCAGGGATTATCCCTCCAAAATCCTGATGAATC...GTGTCTTTGGATGCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
3UTR CAA 72 bp ATCTCAAAAGTGTGTTCTTTAAACAGTGAGAGGCCATaGCATGGAGTGCTTAATGGGAACTCTCATCCCTCT +
Preference number: 4 (lower is better)
Translates to: ISKVCSLNSERP*HGVLNGNSHPS
Trigger: AGAGGGATGAGAGTTCCCATTAAGCACTCCATGCAATGGCCTCTCACTGTTTAAAGAACACACTTTTGAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR TCA 90 bp GCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCATCCAAAGACACTGTTCACGATCCGTTTaGCCTTTTCTACAATGCTGT +
Preference number: 4 (lower is better)
Translates to: AIFIENSTGTEPVSIQRHCSRSV*PFLQCC
Trigger: ACAGCATTGTAGAAAAGGTCAAACGGATCGTGAACA...GTGTCTTTGGATGCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp GCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCATCCAAAGACACACGAGGACTTTTCTTTaGGATCCAACATCCTGGAAA +
Preference number: 4 (lower is better)
Translates to: AIFIENSTGTEPVSIQRHTRTFL*DPTSWK
Trigger: TTTCCAGGATGTTGGATCTCAAAGAAAAGTCCTCGT...GTGTCTTTGGATGCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp GGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCTGGAGAAGAGGTACATaGAAGGAATATTTAAGGGTC +
Preference number: 4 (lower is better)
Translates to: GNDAAIFIENSTGTEPVSWRRGT*KEYLRV
Trigger: GACCCTTAAATATTCCTTTCATGTACCTCTTCTCCA...GCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR GCA 90 bp ACTCAAATTTCTTCTTGGGGTTCTCCTCTCAAGGCCTATAATTTTAACGCCTTCCTTGAAAAGGACACATaGATCTCATTCACGCTGGAG +
Preference number: 4 (lower is better)
Translates to: TQISSWGSPLKAYNFNAFLEKDT*ISFTLE
Trigger: CTCCAGCGTGAATGAGATGCATGTGTCCTTTTCAAG...GAAGGCGTTAAAATTATAGGCCTTGAGAGGAGAACCCCAAGAAGAAATTTGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR GCA 90 bp GCTAAACTCAAATTTCTTCTTGGGGTTCTCCTCTCAAGGCCTATAATTTTAACGGAGCTTGGGTTGAGATaGTCCAAAAGTCATTGTGCC +
Preference number: 4 (lower is better)
Translates to: AKLKFLLGVLLSRPIILTELGLR*SKSHCA
Trigger: GGCACAATGACTTTTGGAGCATCTCAACCCAAGCTC...CGTTAAAATTATAGGCCTTGAGAGGAGAACCCCAAGAAGAAATTTGAGTTTAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR GCA 90 bp CCGATTCTGATGAGTTTGATTCAATTACAGTCTAAGAAGTCCTGTATTCTTGCCTGGAGGGATAATCCCTaGGCAGCTTCTCAAAAGCAA +
Preference number: 4 (lower is better)
Translates to: PILMSLIQLQSKKSCILAWRDNP*AASQKQ
Trigger: TTGCTTTTGAGAAGCTGCGCAGGGATTATCCCTCCA...GGCAAGAATACAGGACTTCTTAGACTGTAATTGAATCAAACTCATCAGAATCGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR GCA 90 bp AACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGTTCTCTTCCTCCCACAGATCTaGACCATGACCACAATGAAC +
Preference number: 4 (lower is better)
Translates to: NYEVWYMRAKLKFLLGVLFLPQI*TMTTMN
Trigger: GTTCATTGTGGTCATGGTGCAGATCTGTGGGAGGAA...GAGAACCCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp GCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCATCCAAAGACACTGCCCATCACCAGTTTaGTTTAAAATCTCATTGGCC +
Preference number: 4 (lower is better)
Translates to: AIFIENSTGTEPVSIQRHCPSPV*FKISLA
Trigger: GGCCAATGAGATTTTAAACCAAACTGGTGATGGGCA...GTGTCTTTGGATGCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp CAGTCTAAGAAGTCCTGTATTCTTGCCGGGCTCAGAGTGTTCTCAGCTCTTGAACGATTCATTATTGCTTaGAAGGCCAATGCTAAAATT +
Preference number: 4 (lower is better)
Translates to: QSKKSCILAGLRVFSALERFIIA*KANAKI
Trigger: AATTTTAGCATTGGCCTTCCAAGCAATAATGAATCG...TTCAAGAGCTGAGAACACTCTGAGCCCGGCAAGAATACAGGACTTCTTAGACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp ATAAATATGTACAGAAGAGACATTGCCAAAGGTACTCTACACAGTAAGAAACAGCAATGTACATGTGGATaGCTTCCAGCCCCATCCAGG +
Preference number: 4 (lower is better)
Translates to: INMYRRDIAKGTLHSKKQQCTCG*LPAPSR
Trigger: CCTGGATGGGGCTGGAAGCCATCCACATGTACATTG...CTGTTTCTTACTGTGTAGAGTACCTTTGGCAATGTCTCTTCTGTACATATTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR GCA 90 bp GCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCATCCAAAGACACGTTCAGGAATGGAGATaGTTTTTGCAACTGATACCT +
Preference number: 4 (lower is better)
Translates to: AIFIENSTGTEPVSIQRHVQEWR*FLQLIP
Trigger: AGGTATCAGTTGCAAAAAGCATCTCCATTCCTGAAC...GTGTCTTTGGATGCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp AACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGTTCTCCCACAGAATTTTGTCTaGCTCTCTCCATTATCGAGG +
Preference number: 4 (lower is better)
Translates to: NYEVWYMRAKLKFLLGVLPQNFV*LSPLSR
Trigger: CCTCGATAATGGAGAGAGCCAGACAAAATTCTGTGG...GAGAACCCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp AACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGTTCTCTTGCAGCTGAGAAAATaGCAGATATTCCGCACCCAA +
Preference number: 4 (lower is better)
Translates to: NYEVWYMRAKLKFLLGVLLQLRK*QIFRTQ
Trigger: TTGGGTGCGGAATATCTGCCATTTTCTCAGCTGCAA...GAGAACCCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp ACTGAAAAAGGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAAAGAGCAATGTACATGTaGATGGCTTCCAGCCCCATC +
Preference number: 4 (lower is better)
Translates to: TEKGNDAAIFIENSTGTERAMYM*MASSPI
Trigger: GATGGGGCTGGAAGCCATCCACATGTACATTGCTCT...TTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCCTTTTTCAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp AACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGTTCTCCCAATTCTGAAAGGTTaGATTGAGCCATTCTGCTAC +
Preference number: 4 (lower is better)
Translates to: NYEVWYMRAKLKFLLGVLPILKG*IEPFCY
Trigger: GTAGCAGAATGGCTCAATTCAACCTTTCAGAATTGG...GAGAACCCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp AACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGTTCTCGCCAATGCTAAAATTTaGAGGTGCATTTGTTCCTGG +
Preference number: 4 (lower is better)
Translates to: NYEVWYMRAKLKFLLGVLANAKI*RCICSW
Trigger: CCAGGAACAAATGCACCTTCAAATTTTAGCATTGGC...GAGAACCCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp ACTGAAAAAGGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAAAAGGCACAGATAGGATaGTGCACTTCCTGTGTTCTG +
Preference number: 4 (lower is better)
Translates to: TEKGNDAAIFIENSTGTEKAQIG*CTSCVL
Trigger: CAGAACACAGGAAGTGCATCATCCTATCTGTGCCTT...TTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCCTTTTTCAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp ACTGAAAAAGGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAAGAACTCCAAAGTGAGTaGAGTGGCTGCACAGACAAA +
Preference number: 4 (lower is better)
Translates to: TEKGNDAAIFIENSTGTEELQSE*SGCTDK
Trigger: TTTGTCTGTGCAGCCACTTCACTCACTTTGGAGTTC...TTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCCTTTTTCAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp AAGCCTAACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGCAGACCCCAGCCTATaGTGCAGAATTTTAGAATAT +
Preference number: 4 (lower is better)
Translates to: KPNYEVWYMRAKLKFLLGADPSL*CRILEY
Trigger: ATATTCTAAAATTCTGCATCATAGGCTGGGGTCTGC...CCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTTAGGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp ACTCAAATTTCTTCTTGGGGTTCTCCTCTCAAGGCCTATAATTTTAACGCCTTCGTGGCTGAAGGCATCTaGCAGGATGATATTTTTATA +
Preference number: 4 (lower is better)
Translates to: TQISSWGSPLKAYNFNAFVAEGI*QDDIFI
Trigger: TATAAAAATATCATCCTGTCAGATGCCTTCAGCCAC...GAAGGCGTTAAAATTATAGGCCTTGAGAGGAGAACCCCAAGAAGAAATTTGAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000238680.2
CDS-3UTR GCA 90 bp CCGATTCTGATGAGTTTGATTCAATTACAGTCTAAGAAGTCCTGTATTCTTGCCCTCCAAAAGTCATTGTaGCAGTCTATGACATTCCCA +
Preference number: 4 (lower is better)
Translates to: PILMSLIQLQSKKSCILALQKSL*QSMTFP
Trigger: TGGGAATGTCATAGACTGGCACAATGACTTTTGGAG...GGCAAGAATACAGGACTTCTTAGACTGTAATTGAATCAAACTCATCAGAATCGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp GCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCATCCAAAGACACGATGGTGGAATCACATaGAACTGTTTCATAGTTCTT +
Preference number: 4 (lower is better)
Translates to: AIFIENSTGTEPVSIQRHDGGIT*NCFIVL
Trigger: AAGAACTATGAAACAGTTCCATGTGATTCCACCATC...GTGTCTTTGGATGCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp GCTAAACTCAAATTTCTTCTTGGGGTTCTCCTCTCAAGGCCTATAATTTTAACGGATACTAAAGTCACTTaGAAAGGACACATGCATCTC +
Preference number: 4 (lower is better)
Translates to: AKLKFLLGVLLSRPIILTDTKVT*KGHMHL
Trigger: GAGATGCATGTGTCCTTTTCAAGTGACTTTAGTATC...CGTTAAAATTATAGGCCTTGAGAGGAGAACCCCAAGAAGAAATTTGAGTTTAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp ACTGAAAAAGGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAAGCTCCAAGTTTTCTGTaGAGATGTCCTCTTTGTCCT +
Preference number: 4 (lower is better)
Translates to: TEKGNDAAIFIENSTGTEAPSFL*RCPLCP
Trigger: AGGACAAAGAGGACATCTTCACAGAAAACTTGGAGC...TTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCCTTTTTCAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp GCTAAACTCAAATTTCTTCTTGGGGTTCTCCTCTCAAGGCCTATAATTTTAACGAGTCATAGATACAGTTaGGAGCTTCTTCAATGTCGA +
Preference number: 4 (lower is better)
Translates to: AKLKFLLGVLLSRPIILTSHRYS*ELLQCR
Trigger: TCGACATTGAAGAAGCTCCCAACTGTATCTATGACT...CGTTAAAATTATAGGCCTTGAGAGGAGAACCCCAAGAAGAAATTTGAGTTTAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp GCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCATCCAAAGACACGGTTTAAAATCTCATTaGCCACTTCATTTGATTGTC +
Preference number: 4 (lower is better)
Translates to: AIFIENSTGTEPVSIQRHGLKSH*PLHLIV
Trigger: GACAATCAAATGAAGTGGCCAATGAGATTTTAAACC...GTGTCTTTGGATGCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp ACTGAAAAAGGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAAACGAGGACTTTTCTTTaGGATCCAACATCCTGGAAA +
Preference number: 4 (lower is better)
Translates to: TEKGNDAAIFIENSTGTETRTFL*DPTSWK
Trigger: TTTCCAGGATGTTGGATCTCAAAGAAAAGTCCTCGT...TTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCCTTTTTCAGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp GCTAAACTCAAATTTCTTCTTGGGGTTCTCCTCTCAAGGCCTATAATTTTAACGAACCTTGTAATGAATTaGAGATGGAGAAGAGGTACA +
Preference number: 4 (lower is better)
Translates to: AKLKFLLGVLLSRPIILTNLVMN*RWRRGT
Trigger: TGTACCTCTTCTCCATCTTCAATTCATTACAAGGTT...CGTTAAAATTATAGGCCTTGAGAGGAGAACCCCAAGAAGAAATTTGAGTTTAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR GCA 90 bp ATAAATATGTACAGAAGAGACATTGCCAAAGGTACTCTACACAGTAAGAAACAGCTCCAAAAGTCATTGTaGCAGTCTATGACATTCCCA +
Preference number: 4 (lower is better)
Translates to: INMYRRDIAKGTLHSKKQLQKSL*QSMTFP
Trigger: TGGGAATGTCATAGACTGGCACAATGACTTTTGGAG...CTGTTTCTTACTGTGTAGAGTACCTTTGGCAATGTCTCTTCTGTACATATTTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR CCA 90 bp AACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGTTCTCGATGGTGGAATCACATaGAACTGTTTCATAGTTCTT +
Preference number: 4 (lower is better)
Translates to: NYEVWYMRAKLKFLLGVLDGGIT*NCFIVL
Trigger: AAGAACTATGAAACAGTTCCATGTGATTCCACCATC...GAGAACCCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp AACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGTTCTCTTGAATTGGAGCCAATaGAGCTTGAAGACAAAGATT +
Preference number: 4 (lower is better)
Translates to: NYEVWYMRAKLKFLLGVLLNWSQ*SLKTKI
Trigger: AATCTTTGTCTTCAAGCTCCATTGGCTCCAATTCAA...GAGAACCCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR TCA 90 bp ACTGAAAAAGGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAAGATACTAAAGTCACTTaGAAAGGACACATGCATCTC +
Preference number: 4 (lower is better)
Translates to: TEKGNDAAIFIENSTGTEDTKVT*KGHMHL
Trigger: GAGATGCATGTGTCCTTTTCAAGTGACTTTAGTATC...TTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCCTTTTTCAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR GCA 90 bp ACTGAAAAAGGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAAGTTCAGGAATGGAGATaGTTTTTGCAACTGATACCT +
Preference number: 4 (lower is better)
Translates to: TEKGNDAAIFIENSTGTEVQEWR*FLQLIP
Trigger: AGGTATCAGTTGCAAAAAGCATCTCCATTCCTGAAC...TTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCCTTTTTCAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp ACTGAAAAAGGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAAAGTCATAGATACAGTTaGGAGCTTCTTCAATGTCGA +
Preference number: 4 (lower is better)
Translates to: TEKGNDAAIFIENSTGTESHRYS*ELLQCR
Trigger: TCGACATTGAAGAAGCTCCCAACTGTATCTATGACT...TTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCCTTTTTCAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp AAGCCTAACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGGTTTAAAATCTCATTaGCCACTTCATTTGATTGTC +
Preference number: 4 (lower is better)
Translates to: KPNYEVWYMRAKLKFLLGGLKSH*PLHLIV
Trigger: GACAATCAAATGAAGTGGCCAATGAGATTTTAAACC...CCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTTAGGCTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp GTTTGCCCTCACAGTTGCTTTACCTGTCATATTCAACAATATCACTACAGAAAAATTCTCAAGCAAATTTaGAGGCAAAATCACAGATGC +
Preference number: 4 (lower is better)
Translates to: VCPHSCFTCHIQQYHYRKILKQI*RQNHRC
Trigger: GCATCTGTGATTTTGCCTCCAAATTTGCTTGAGAAT...TTTTCTGTAGTGATATTGTTGAATATGACAGGTAAAGCAACTGTGAGGGCAAAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR CCA 90 bp GTTTGCCCTCACAGTTGCTTTACCTGTCATATTCAACAATATCACTACAGAAAACGATTCATTATTGCTTaGAAGGCCAATGCTAAAATT +
Preference number: 4 (lower is better)
Translates to: VCPHSCFTCHIQQYHYRKRFIIA*KANAKI
Trigger: AATTTTAGCATTGGCCTTCCAAGCAATAATGAATCG...TTTTCTGTAGTGATATTGTTGAATATGACAGGTAAAGCAACTGTGAGGGCAAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR CCA 90 bp ACTGAAAAAGGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAAATTCTCAAGCAAATTTaGAGGCAAAATCACAGATGC +
Preference number: 4 (lower is better)
Translates to: TEKGNDAAIFIENSTGTEILKQI*RQNHRC
Trigger: GCATCTGTGATTTTGCCTCCAAATTTGCTTGAGAAT...TTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCCTTTTTCAGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CCA 90 bp ACTGAAAAAGGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAAGGATCTTTCAGATTCTaGATAGTAATGTTTCCAATG +
Preference number: 4 (lower is better)
Translates to: TEKGNDAAIFIENSTGTEGSFRF*IVMFPM
Trigger: CATTGGAAACATTACTATCCAGAATCTGAAAGATCC...TTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCCTTTTTCAGT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS TCA 90 bp GTGGTGACAGTGGGTGGTGGAGTAGAAGGAGGGCTTACAGTAGCTTaGCAGAGAGTCCCCAGTTCTGAACAGTTTGTCAGCTCTGCTGCA +
Preference number: 5 (lower is better)
Translates to: VVTVGGGVEGGLTVA*QRVPSSEQFVSSAA
Trigger: TGCAGCAGAGCTGACAAACTGTTCAGAACTGGGGACTCTCTGTCAAGCTACTGTAAGCCCTCCTTCTACTCCACCACCCACTGTCACCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208429.3
CDS TCA 90 bp AGTAGAAGGAGGGCTTACAGTAGCTTGACAGAGAGTCCCCAGTTCTaGACAGTTTGTCAGCTCTGCTGCAGGAAGCTGGATCAGGTAGGA +
Preference number: 5 (lower is better)
Translates to: SRRRAYSSLTESPQF*TVCQLCCRKLDQVG
Trigger: TCCTACCTGATCCAGCTTCCTGCAGCAGAGCTGACAAACTGTTCAGAACTGGGGACTCTCTGTCAAGCTACTGTAAGCCCTCCTTCTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208429.3
CDS GCA 90 bp CCCTCGGCTTTCAGAGCTTGGGTTGAGATGCTCCAAAAGTCATTGTaGCAGTCTATGACATTCCCAGACACACTACAGCTGAGGTTGGAG +
Preference number: 5 (lower is better)
Translates to: PSAFRAWVEMLQKSL*QSMTFPDTLQLRLE
Trigger: CTCCAACCTCAGCTGTAGTGTGTCTGGGAATGTCATAGACTGGCACAATGACTTTTGGAGCATCTCAACCCAAGCTCTGAAAGCCGAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CCA 90 bp ATGGACTCTGTTAGTAACGGGGATATTAGTGGTGACAGTGGGTGGTaGAGTAGAAGGAGGGCTTACAGTAGCTTGACAGAGAGTCCCCAG +
Preference number: 5 (lower is better)
Translates to: MDSVSNGDISGDSGW*SRRRAYSSLTESPQ
Trigger: CTGGGGACTCTCTGTCAAGCTACTGTAAGCCCTCCTTCTACTCCACCACCCACTGTCACCACTAATATCCCCGTTACTAACAGAGTCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208429.3
CDS-3UTR CAA 90 bp CTCCTGCCTTCTAGCAGGCTGGCTCTGCTAAAATCTCCCTTTGTGGTCACTGTGTGTTCAACAAGCATCTaGAGCCAGAGATGGACAGGA +
Preference number: 5 (lower is better)
Translates to: LLPSSRLALLKSPFVVTVCSTSI*SQRWTG
Trigger: TCCTGTCCATCTCTGGCTCAAGATGCTTGTTGAACA...CACAGTGACCACAAAGGGAGATTTTAGCAGAGCCAGCCTGCTAGAAGGCAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR CAA 90 bp GCCCTCTGTAGGGTCTCATCCACTCTGATCAGAGGGCTCGGTGCAAACAGTTTTTGGAGCCAATGGAGCTaGAAGACAAAGATTTCCCCA +
Preference number: 5 (lower is better)
Translates to: ALCRVSSTLIRGLGANSFWSQWS*KTKISP
Trigger: TGGGGAAATCTTTGTCTTCAAGCTCCATTGGCTCCA...AAAACTGTTTGCACCGAGCCCTCTGATCAGAGTGGATGAGACCCTACAGAGGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR CAA 90 bp AGATGCAGTCAGTCCTCTAAGCTCTGCAGTTCCCTACAGAGCAGCACACTGACACATATGTCAGGAGAGTaGCAGCTGAGAAAATGGCAG +
Preference number: 5 (lower is better)
Translates to: RCSQSSKLCSSLQSSTLTHMSGE*QLRKWQ
Trigger: CTGCCATTTTCTCAGCTGCAACTCTCCTGACATATG...TGTCAGTGTGCTGCTCTGTAGGGAACTGCAGAGCTTAGAGGACTGACTGCATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS TCA 90 bp TTTGTGAGGCACTCCTTGGAAGATCCATCAGAACTCCAAAGTGAGTaGAGTGGCTGCACAGACAAATGGTCTCACCAGCGTCCAAATCAG +
Preference number: 5 (lower is better)
Translates to: FVRHSLEDPSELQSE*SGCTDKWSHQRPNQ
Trigger: CTGATTTGGACGCTGGTGAGACCATTTGTCTGTGCAGCCACTTCACTCACTTTGGAGTTCTGATGGATCTTCCAAGGAGTGCCTCACAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CCA 90 bp TTTATGGACTCTGTTAGTAACGGGGATATTAGTGGTGACAGTGGGTaGTGGAGTAGAAGGAGGGCTTACAGTAGCTTGACAGAGAGTCCC +
Preference number: 5 (lower is better)
Translates to: FMDSVSNGDISGDSG*WSRRRAYSSLTESP
Trigger: GGGACTCTCTGTCAAGCTACTGTAAGCCCTCCTTCTACTCCACCACCCACTGTCACCACTAATATCCCCGTTACTAACAGAGTCCATAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208429.3
CDS-3UTR CAA 90 bp CTCCTGCCTTCTAGCAGGCTGGCTCTGCTAAAATCTCCCTTTGTGGTCACTGTGTTATCGGAGCTCTTCTaGATGATATTGGTAGCTGTC +
Preference number: 5 (lower is better)
Translates to: LLPSSRLALLKSPFVVTVLSELF*MILVAV
Trigger: GACAGCTACCAATATCATCAAGAAGAGCTCCGATAA...CACAGTGACCACAAAGGGAGATTTTAGCAGAGCCAGCCTGCTAGAAGGCAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS TCA 90 bp ATTACTGGCCTTTTCAAGACTGAGCAGCTGTGTAAGGGACTCGTCTaGGTAGGAGAAAGCTGTCCAGTCACCACCTTCATTGCCAACTTT +
Preference number: 5 (lower is better)
Translates to: ITGLFKTEQLCKGLV*VGESCPVTTFIANF
Trigger: AAAGTTGGCAATGAAGGTGGTGACTGGACAGCTTTCTCCTACTCAGACGAGTCCCTTACACAGCTGCTCAGTCTTGAAAAGGCCAGTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp AGATGCAGTCAGTCCTCTAAGCTCTGCAGTTCCCTACAGAGCAGCACACTGACAAGCCATTCTGCTACTTaGGTCTGCACTTTTACTTCA +
Preference number: 5 (lower is better)
Translates to: RCSQSSKLCSSLQSSTLTSHSAT*VCTFTS
Trigger: TGAAGTAAAAGTGCAGACCAAAGTAGCAGAATGGCT...TGTCAGTGTGCTGCTCTGTAGGGAACTGCAGAGCTTAGAGGACTGACTGCATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp AGATGCAGTCAGTCCTCTAAGCTCTGCAGTTCCCTACAGAGCAGCACACTGACACATTGGCCACTTCATTaGATTGTCTTGAACAGTTGG +
Preference number: 5 (lower is better)
Translates to: RCSQSSKLCSSLQSSTLTHWPLH*IVLNSW
Trigger: CCAACTGTTCAAGACAATCAAATGAAGTGGCCAATG...TGTCAGTGTGCTGCTCTGTAGGGAACTGCAGAGCTTAGAGGACTGACTGCATCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS TCA 90 bp AGATATTCGATACATTATTCCGTCTTGACAGAGAGTCCCCAGTTCTaGACAGTTTGTCAGCTCTGCTGCAGGAAGCTGGATCAGGTAGGA +
Preference number: 5 (lower is better)
Translates to: RYSIHYSVLTESPQF*TVCQLCCRKLDQVG
Trigger: TCCTACCTGATCCAGCTTCCTGCAGCAGAGCTGACAAACTGTTCAGAACTGGGGACTCTCTGTCAAGACGGAATAATGTATCGAATATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp CAGTCTAAGAAGTCCTGTATTCTTGCCGGGCTCAGAGTGTTCTCAGCTCTTGAATTCACAGGTAACGCATaGTTCAACAAGCATCTTGAG +
Preference number: 5 (lower is better)
Translates to: QSKKSCILAGLRVFSALEFTGNA*FNKHLE
Trigger: CTCAAGATGCTTGTTGAACAATGCGTTACCTGTGAA...TTCAAGAGCTGAGAACACTCTGAGCCCGGCAAGAATACAGGACTTCTTAGACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp AGATGCAGTCAGTCCTCTAAGCTCTGCAGTTCCCTACAGAGCAGCACACTGACACTTCATTTGATTGTCTaGAACAGTTGGAAGTGTCAA +
Preference number: 5 (lower is better)
Translates to: RCSQSSKLCSSLQSSTLTLHLIV*NSWKCQ
Trigger: TTGACACTTCCAACTGTTCAAGACAATCAAATGAAG...TGTCAGTGTGCTGCTCTGTAGGGAACTGCAGAGCTTAGAGGACTGACTGCATCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp CCTTCTAGCAGGCTGGCTCTGCTAAAATCTCCCTTTGTGGTCACTGTGCTATCTCCGAAACTTTTGTTTTaGTTCATATCCCAGAAGGCA +
Preference number: 5 (lower is better)
Translates to: PSSRLALLKSPFVVTVLSPKLLF*FISQKA
Trigger: TGCCTTCTGGGATATGAACAAAAACAAAAGTTTCGG...AGATAGCACAGTGACCACAAAGGGAGATTTTAGCAGAGCCAGCCTGCTAGAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS TCA 90 bp CGCTCCACAGAATTTTGTCTGGCTCTCTCCATTATCGAGGGACAATaGGTCATAGATACAGTTGGGAGCTTCTTCAATGTCGAAGTCATT +
Preference number: 5 (lower is better)
Translates to: RSTEFCLALSIIEGQ*VIDTVGSFFNVEVI
Trigger: AATGACTTCGACATTGAAGAAGCTCCCAACTGTATCTATGACTCATTGTCCCTCGATAATGGAGAGAGCCAGACAAAATTCTGTGGAGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp CCGATTCTGATGAGTTTGATTCAATTACAGTCTAAGAAGTCCTGTATTCTTGCCACACTACAGCTGAGGTaGGAGAGGGCTTTCAGATCC +
Preference number: 5 (lower is better)
Translates to: PILMSLIQLQSKKSCILATLQLR*ERAFRS
Trigger: GGATCTGAAAGCCCTCTCCAACCTCAGCTGTAGTGT...GGCAAGAATACAGGACTTCTTAGACTGTAATTGAATCAAACTCATCAGAATCGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp AACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGTTCTCACACTACAGCTGAGGTaGGAGAGGGCTTTCAGATCC +
Preference number: 5 (lower is better)
Translates to: NYEVWYMRAKLKFLLGVLTLQLR*ERAFRS
Trigger: GGATCTGAAAGCCCTCTCCAACCTCAGCTGTAGTGT...GAGAACCCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp GGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCCTTTCAGAGCTTGGGTaGAGATGCTCCAAAAGTCAT +
Preference number: 5 (lower is better)
Translates to: GNDAAIFIENSTGTEPVSLSELG*RCSKSH
Trigger: ATGACTTTTGGAGCATCTCAACCCAAGCTCTGAAAG...GCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp CAGTCTAAGAAGTCCTGTATTCTTGCCGGGCTCAGAGTGTTCTCAGCTCTTGAAAAGTACGATTCATTATaGCTTGGAAGGCCAATGCTA +
Preference number: 5 (lower is better)
Translates to: QSKKSCILAGLRVFSALEKYDSL*LGRPML
Trigger: TAGCATTGGCCTTCCAAGCAATAATGAATCGTACTT...TTCAAGAGCTGAGAACACTCTGAGCCCGGCAAGAATACAGGACTTCTTAGACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp CAGTCTAAGAAGTCCTGTATTCTTGCCGGGCTCAGAGTGTTCTCAGCTCTTGAATGGAAAAGTCCGGTTTaGTTGAAGAAAGTGAACTGT +
Preference number: 5 (lower is better)
Translates to: QSKKSCILAGLRVFSALEWKSPV*LKKVNC
Trigger: ACAGTTCACTTTCTTCAACAAAACCGGACTTTTCCA...TTCAAGAGCTGAGAACACTCTGAGCCCGGCAAGAATACAGGACTTCTTAGACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS TCA 90 bp CCCAAGAATTATTCCACACAAGACAGAGCTGCTCCAAGTTTTCTGTaGAGATGTCCTCTTTGTCCTTCACAGGTAACGCATTGTTCAACA +
Preference number: 5 (lower is better)
Translates to: PKNYSTQDRAAPSFL*RCPLCPSQVTHCST
Trigger: TGTTGAACAATGCGTTACCTGTGAAGGACAAAGAGGACATCTTCACAGAAAACTTGGAGCAGCTCTGTCTTGTGTGGAATAATTCTTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS GCA 90 bp TTGAAACCTTTCTTCTGGATACTAAAGTCACTTGAAAAGGACACATaGATCTCATTCACGCTGGAGTTAAATGACAGGCCCTTGGCAGTC +
Preference number: 5 (lower is better)
Translates to: LKPFFWILKSLEKDT*ISFTLELNDRPLAV
Trigger: GACTGCCAAGGGCCTGTCATTTAACTCCAGCGTGAATGAGATGCATGTGTCCTTTTCAAGTGACTTTAGTATCCAGAAGAAAGGTTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp CCGATTCTGATGAGTTTGATTCAATTACAGTCTAAGAAGTCCTGTATTCTTGCCTTAAATGACAGGCCCTaGGCAGTCGCTCCACAGAAT +
Preference number: 5 (lower is better)
Translates to: PILMSLIQLQSKKSCILALNDRP*AVAPQN
Trigger: ATTCTGTGGAGCGACTGCCAAGGGCCTGTCATTTAA...GGCAAGAATACAGGACTTCTTAGACTGTAATTGAATCAAACTCATCAGAATCGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp ACTCAAATTTCTTCTTGGGGTTCTCCTCTCAAGGCCTATAATTTTAACGCCTTCCCTTCATTGCCAACTTaGGAGGCTTCAAAACAGAGC +
Preference number: 5 (lower is better)
Translates to: TQISSWGSPLKAYNFNAFPSLPT*EASKQS
Trigger: GCTCTGTTTTGAAGCCTCCAAAGTTGGCAATGAAGG...GAAGGCGTTAAAATTATAGGCCTTGAGAGGAGAACCCCAAGAAGAAATTTGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp AAGCCTAACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGCAGTCACCACCTTCATaGCCAACTTTGGAGGCTTCA +
Preference number: 5 (lower is better)
Translates to: KPNYEVWYMRAKLKFLLGQSPPS*PTLEAS
Trigger: TGAAGCCTCCAAAGTTGGCAATGAAGGTGGTGACTG...CCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTTAGGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp GGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCATGCTCCAAAAGTCATaGTGCCAGTCTATGACATTC +
Preference number: 5 (lower is better)
Translates to: GNDAAIFIENSTGTEPVSMLQKS*CQSMTF
Trigger: GAATGTCATAGACTGGCACAATGACTTTTGGAGCAT...GCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp GGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCAGCCATTCTGCTACTTaGGTCTGCACTTTTACTTCA +
Preference number: 5 (lower is better)
Translates to: GNDAAIFIENSTGTEPVSSHSAT*VCTFTS
Trigger: TGAAGTAAAAGTGCAGACCAAAGTAGCAGAATGGCT...GCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS CCA 90 bp ATGCTGTTGATATTAGCCGAGGTGAGGTTCTGCCCATCACCAGTTTaGTTTAAAATCTCATTGGCCACTTCATTTGATTGTCTTGAACAG +
Preference number: 5 (lower is better)
Translates to: MLLILAEVRFCPSPV*FKISLATSFDCLEQ
Trigger: CTGTTCAAGACAATCAAATGAAGTGGCCAATGAGATTTTAAACCAAACTGGTGATGGGCAGAACCTCACCTCGGCTAATATCAACAGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp ATAAATATGTACAGAAGAGACATTGCCAAAGGTACTCTACACAGTAAGAAACAGAAGGTACCGGAAGGATaGGACAGGACAAGTCTGCAG +
Preference number: 5 (lower is better)
Translates to: INMYRRDIAKGTLHSKKQKVPEG*DRTSLQ
Trigger: CTGCAGACTTGTCCTGTCCAATCCTTCCGGTACCTT...CTGTTTCTTACTGTGTAGAGTACCTTTGGCAATGTCTCTTCTGTACATATTTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR CAA 90 bp ACTGAAAAAGGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAAAAGGTACCGGAAGGATaGGACAGGACAAGTCTGCAG +
Preference number: 5 (lower is better)
Translates to: TEKGNDAAIFIENSTGTEKVPEG*DRTSLQ
Trigger: CTGCAGACTTGTCCTGTCCAATCCTTCCGGTACCTT...TTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCCTTTTTCAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp AACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGTTCTCTGTTCAACAAGCATCTaGAGCCAGAGATGGACAGGA +
Preference number: 5 (lower is better)
Translates to: NYEVWYMRAKLKFLLGVLCSTSI*SQRWTG
Trigger: TCCTGTCCATCTCTGGCTCAAGATGCTTGTTGAACA...GAGAACCCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp CCGATTCTGATGAGTTTGATTCAATTACAGTCTAAGAAGTCCTGTATTCTTGCCGTGAAGATGTCCTCTTaGTCCTTCACAGGTAACGCA +
Preference number: 5 (lower is better)
Translates to: PILMSLIQLQSKKSCILAVKMSS*SFTGNA
Trigger: TGCGTTACCTGTGAAGGACAAAGAGGACATCTTCAC...GGCAAGAATACAGGACTTCTTAGACTGTAATTGAATCAAACTCATCAGAATCGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp AAGCCTAACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGTGAAGATGTCCTCTTaGTCCTTCACAGGTAACGCA +
Preference number: 5 (lower is better)
Translates to: KPNYEVWYMRAKLKFLLGVKMSS*SFTGNA
Trigger: TGCGTTACCTGTGAAGGACAAAGAGGACATCTTCAC...CCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTTAGGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp ACTCAAATTTCTTCTTGGGGTTCTCCTCTCAAGGCCTATAATTTTAACGCCTTCTCCATGATGTCTCTCTaGACTTTCATCCTGTCCTCT +
Preference number: 5 (lower is better)
Translates to: TQISSWGSPLKAYNFNAFSMMSL*TFILSS
Trigger: AGAGGACAGGATGAAAGTCAAGAGAGACATCATGGA...GAAGGCGTTAAAATTATAGGCCTTGAGAGGAGAACCCCAAGAAGAAATTTGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp CACTCTTCTGAGGAGGCAAATGAGAGCCACAGACTTGTAACTGAAGGCAAAATTAATTTGAAGGTGCATTaGTTCCTGGAATTAGGGATG +
Preference number: 5 (lower is better)
Translates to: HSSEEANESHRLVTEGKINLKVH*FLELGM
Trigger: CATCCCTAATTCCAGGAACAAATGCACCTTCAAATT...AATTTTGCCTTCAGTTACAAGTCTGTGGCTCTCATTTGCCTCCTCAGAAGAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR CAA 90 bp AACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGTTCTCTGGAGCCAATGGAGCTaGAAGACAAAGATTTCCCCA +
Preference number: 5 (lower is better)
Translates to: NYEVWYMRAKLKFLLGVLWSQWS*KTKISP
Trigger: TGGGGAAATCTTTGTCTTCAAGCTCCATTGGCTCCA...GAGAACCCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp GGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCGAGCTGGACTTTGATTaGGATGTGAGATATGTTGAA +
Preference number: 5 (lower is better)
Translates to: GNDAAIFIENSTGTEPVSELDFD*DVRYVE
Trigger: TTCAACATATCTCACATCCAAATCAAAGTCCAGCTC...GCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp ATAAATATGTACAGAAGAGACATTGCCAAAGGTACTCTACACAGTAAGAAACAGTTAAATGACAGGCCCTaGGCAGTCGCTCCACAGAAT +
Preference number: 5 (lower is better)
Translates to: INMYRRDIAKGTLHSKKQLNDRP*AVAPQN
Trigger: ATTCTGTGGAGCGACTGCCAAGGGCCTGTCATTTAA...CTGTTTCTTACTGTGTAGAGTACCTTTGGCAATGTCTCTTCTGTACATATTTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR CAA 90 bp ACTGAAAAAGGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAACAGTCACCACCTTCATaGCCAACTTTGGAGGCTTCA +
Preference number: 5 (lower is better)
Translates to: TEKGNDAAIFIENSTGTEQSPPS*PTLEAS
Trigger: TGAAGCCTCCAAAGTTGGCAATGAAGGTGGTGACTG...TTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCCTTTTTCAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp CCGATTCTGATGAGTTTGATTCAATTACAGTCTAAGAAGTCCTGTATTCTTGCCCTTTCAGAGCTTGGGTaGAGATGCTCCAAAAGTCAT +
Preference number: 5 (lower is better)
Translates to: PILMSLIQLQSKKSCILALSELG*RCSKSH
Trigger: ATGACTTTTGGAGCATCTCAACCCAAGCTCTGAAAG...GGCAAGAATACAGGACTTCTTAGACTGTAATTGAATCAAACTCATCAGAATCGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp GGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCCTTCATTTGATTGTCTaGAACAGTTGGAAGTGTCAA +
Preference number: 5 (lower is better)
Translates to: GNDAAIFIENSTGTEPVSLHLIV*NSWKCQ
Trigger: TTGACACTTCCAACTGTTCAAGACAATCAAATGAAG...GCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp GCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCATCCAAAGACACTCAATGTTTTCTTCTTaGTTCACGATCCGTTTGACC +
Preference number: 5 (lower is better)
Translates to: AIFIENSTGTEPVSIQRHSMFSS*FTIRLT
Trigger: GGTCAAACGGATCGTGAACAAAGAAGAAAACATTGA...GTGTCTTTGGATGCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp GCTATATTCATAGAAAATAGCACTGGAACAGAACCCGTGAGCATCCAAAGACACAAGTACGATTCATTATaGCTTGGAAGGCCAATGCTA +
Preference number: 5 (lower is better)
Translates to: AIFIENSTGTEPVSIQRHKYDSL*LGRPML
Trigger: TAGCATTGGCCTTCCAAGCAATAATGAATCGTACTT...GTGTCTTTGGATGCTCACGGGTTCTGTTCCAGTGCTATTTTCTATGAATATAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp GTTTGCCCTCACAGTTGCTTTACCTGTCATATTCAACAATATCACTACAGAAAACATATGTCAGGAGAGTaGCAGCTGAGAAAATGGCAG +
Preference number: 5 (lower is better)
Translates to: VCPHSCFTCHIQQYHYRKHMSGE*QLRKWQ
Trigger: CTGCCATTTTCTCAGCTGCAACTCTCCTGACATATG...TTTTCTGTAGTGATATTGTTGAATATGACAGGTAAAGCAACTGTGAGGGCAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR CAA 90 bp AACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGTTCTCGAATGGAGATGCTTTTaGCAACTGATACCTGGTAAG +
Preference number: 5 (lower is better)
Translates to: NYEVWYMRAKLKFLLGVLEWRCF*QLIPGK
Trigger: CTTACCAGGTATCAGTTGCAAAAAGCATCTCCATTC...GAGAACCCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp ATAAATATGTACAGAAGAGACATTGCCAAAGGTACTCTACACAGTAAGAAACAGCCTTCATTGCCAACTTaGGAGGCTTCAAAACAGAGC +
Preference number: 5 (lower is better)
Translates to: INMYRRDIAKGTLHSKKQPSLPT*EASKQS
Trigger: GCTCTGTTTTGAAGCCTCCAAAGTTGGCAATGAAGG...CTGTTTCTTACTGTGTAGAGTACCTTTGGCAATGTCTCTTCTGTACATATTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR CAA 90 bp AACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGGTTCTCTTCACAGGTAACGCATaGTTCAACAAGCATCTTGAG +
Preference number: 5 (lower is better)
Translates to: NYEVWYMRAKLKFLLGVLFTGNA*FNKHLE
Trigger: CTCAAGATGCTTGTTGAACAATGCGTTACCTGTGAA...GAGAACCCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp GCTAAACTCAAATTTCTTCTTGGGGTTCTCCTCTCAAGGCCTATAATTTTAACGGTGAGATATGTTGAATaGGAGCCAATGGAGCTTGAA +
Preference number: 5 (lower is better)
Translates to: AKLKFLLGVLLSRPIILTVRYVE*EPMELE
Trigger: TTCAAGCTCCATTGGCTCCAATTCAACATATCTCAC...CGTTAAAATTATAGGCCTTGAGAGGAGAACCCCAAGAAGAAATTTGAGTTTAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp ATAAATATGTACAGAAGAGACATTGCCAAAGGTACTCTACACAGTAAGAAACAGTCCATGATGTCTCTCTaGACTTTCATCCTGTCCTCT +
Preference number: 5 (lower is better)
Translates to: INMYRRDIAKGTLHSKKQSMMSL*TFILSS
Trigger: AGAGGACAGGATGAAAGTCAAGAGAGACATCATGGA...CTGTTTCTTACTGTGTAGAGTACCTTTGGCAATGTCTCTTCTGTACATATTTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR CAA 90 bp AAGCCTAACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGAATTTGAAGGTGCATTaGTTCCTGGAATTAGGGATG +
Preference number: 5 (lower is better)
Translates to: KPNYEVWYMRAKLKFLLGNLKVH*FLELGM
Trigger: CATCCCTAATTCCAGGAACAAATGCACCTTCAAATT...CCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTTAGGCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp CCGATTCTGATGAGTTTGATTCAATTACAGTCTAAGAAGTCCTGTATTCTTGCCAAAAGTCCGGTTTTGTaGAAGAAAGTGAACTGTGCT +
Preference number: 5 (lower is better)
Translates to: PILMSLIQLQSKKSCILAKSPVL*KKVNCA
Trigger: AGCACAGTTCACTTTCTTCAACAAAACCGGACTTTT...GGCAAGAATACAGGACTTCTTAGACTGTAATTGAATCAAACTCATCAGAATCGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp AAGCCTAACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGAAAAGTCCGGTTTTGTaGAAGAAAGTGAACTGTGCT +
Preference number: 5 (lower is better)
Translates to: KPNYEVWYMRAKLKFLLGKSPVL*KKVNCA
Trigger: AGCACAGTTCACTTTCTTCAACAAAACCGGACTTTT...CCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTTAGGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp ATAAATATGTACAGAAGAGACATTGCCAAAGGTACTCTACACAGTAAGAAACAGCACGAGGACTTTTCTTaGAGATCCAACATCCTGGAA +
Preference number: 5 (lower is better)
Translates to: INMYRRDIAKGTLHSKKQHEDFS*RSNILE
Trigger: TTCCAGGATGTTGGATCTCAAAGAAAAGTCCTCGTG...CTGTTTCTTACTGTGTAGAGTACCTTTGGCAATGTCTCTTCTGTACATATTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR CAA 90 bp ACTGAAAAAGGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAACACGAGGACTTTTCTTaGAGATCCAACATCCTGGAA +
Preference number: 5 (lower is better)
Translates to: TEKGNDAAIFIENSTGTEHEDFS*RSNILE
Trigger: TTCCAGGATGTTGGATCTCAAAGAAAAGTCCTCGTG...TTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCCTTTTTCAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp AAGCCTAACTATGAGGTGTGGTATATGAGAGCTAAACTCAAATTTCTTCTTGGGCCGAAACTTTTGTTTTaGTTCATATCCCAGAAGGCA +
Preference number: 5 (lower is better)
Translates to: KPNYEVWYMRAKLKFLLGPKLLF*FISQKA
Trigger: TGCCTTCTGGGATATGAACAAAAACAAAAGTTTCGG...CCCAAGAAGAAATTTGAGTTTAGCTCTCATATACCACACCTCATAGTTAGGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp CCGATTCTGATGAGTTTGATTCAATTACAGTCTAAGAAGTCCTGTATTCTTGCCGAGCTGGACTTTGATTaGGATGTGAGATATGTTGAA +
Preference number: 5 (lower is better)
Translates to: PILMSLIQLQSKKSCILAELDFD*DVRYVE
Trigger: TTCAACATATCTCACATCCAAATCAAAGTCCAGCTC...GGCAAGAATACAGGACTTCTTAGACTGTAATTGAATCAAACTCATCAGAATCGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp ACTGAAAAAGGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAACATTGGCCACTTCATTaGATTGTCTTGAACAGTTGG +
Preference number: 5 (lower is better)
Translates to: TEKGNDAAIFIENSTGTEHWPLH*IVLNSW
Trigger: CCAACTGTTCAAGACAATCAAATGAAGTGGCCAATG...TTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCCTTTTTCAGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp GTTTGCCCTCACAGTTGCTTTACCTGTCATATTCAACAATATCACTACAGAAAATGGAAAAGTCCGGTTTaGTTGAAGAAAGTGAACTGT +
Preference number: 5 (lower is better)
Translates to: VCPHSCFTCHIQQYHYRKWKSPV*LKKVNC
Trigger: ACAGTTCACTTTCTTCAACAAAACCGGACTTTTCCA...TTTTCTGTAGTGATATTGTTGAATATGACAGGTAAAGCAACTGTGAGGGCAAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041168.6
CDS-3UTR CAA 90 bp ACTGAAAAAGGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAATTATCGGAGCTCTTCTaGATGATATTGGTAGCTGTC +
Preference number: 5 (lower is better)
Translates to: TEKGNDAAIFIENSTGTELSELF*MILVAV
Trigger: GACAGCTACCAATATCATCAAGAAGAGCTCCGATAA...TTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCCTTTTTCAGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS-3UTR CAA 90 bp ACTGAAAAAGGAAACGATGCTGCTATATTCATAGAAAATAGCACTGGAACAGAAGTGAGATATGTTGAATaGGAGCCAATGGAGCTTGAA +
Preference number: 5 (lower is better)
Translates to: TEKGNDAAIFIENSTGTEVRYVE*EPMELE
Trigger: TTCAAGCTCCATTGGCTCCAATTCAACATATCTCAC...TTCTGTTCCAGTGCTATTTTCTATGAATATAGCAGCATCGTTTCCTTTTTCAGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS TCA 90 bp ACTTATATTAACCACATAAACAGTGTAGTTCCAATTCTGAAAGGTTaGATTGAGCCATTCTGCTACTTTGGTCTGCACTTTTACTTCAGG +
Preference number: 5 (lower is better)
Translates to: TYINHINSVVPILKG*IEPFCYFGLHFYFR
Trigger: CCTGAAGTAAAAGTGCAGACCAAAGTAGCAGAATGGCTCAATTCAACCTTTCAGAATTGGAACTACACTGTTTATGTGGTTAATATAAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS GCA 72 bp CAGGAAGCTGGATCAGGTAGGAACCACAGCTCAGGTTaGCCTCGGCTTTCAGAGCTTGGGTTGAGATGCTCC +
Preference number: 6 (lower is better)
Translates to: QEAGSGRNHSSG*PRLSELGLRCS
Trigger: GGAGCATCTCAACCCAAGCTCTGAAAGCCGAGGGCAACCTGAGCTGTGGTTCCTACCTGATCCAGCTTCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS TCA 72 bp CAAACCCCCACGTCATGCCAAGCAGGAAGGTCAGGCTaGCCACACTGCGCAGGTTTCTTAAAACCTCTTCTC +
Preference number: 6 (lower is better)
Translates to: QTPTSCQAGRSG*PHCAGFLKPLL
Trigger: GAGAAGAGGTTTTAAGAAACCTGCGCAGTGTGGTCAGCCTGACCTTCCTGCTTGGCATGACGTGGGGGTTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 72 bp TTCCGTCTTGACAGAGAGTCCCCAGTTCTGAACAGTTaGTCAGCTCTGCTGCAGGAAGCTGGATCAGGTAGG +
Preference number: 6 (lower is better)
Translates to: FRLDRESPVLNS*SALLQEAGSGR
Trigger: CCTACCTGATCCAGCTTCCTGCAGCAGAGCTGACAAACTGTTCAGAACTGGGGACTCTCTGTCAAGACGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041168.6
ENSMUST00000238680.2
CDS CAA 72 bp TGTTCTCCACCAGCATGGGTCAGTTTTGACAGGGACTaGTCCGTGGAAGTGCTGTCCGAGTGGCTGTTTCTT +
Preference number: 6 (lower is better)
Translates to: CSPPAWVSFDRD*SVEVLSEWLFL
Trigger: AAGAAACAGCCACTCGGACAGCACTTCCACGGACAAGTCCCTGTCAAAACTGACCCATGCTGGTGGAGAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238680.2
CDS CAA 90 bp ACCACACTGCGCAGGTTTCTTAAAACCTCTTCTCTCAGGGTCCGGTaGCTTCTCTTTCCATTCCTCCCACAGATCTGCACCATGACCACA +
Preference number: 6 (lower is better)
Translates to: TTLRRFLKTSSLRVR*LLFPFLPQICTMTT
Trigger: TGTGGTCATGGTGCAGATCTGTGGGAGGAATGGAAAGAGAAGCAACCGGACCCTGAGAGAAGAGGTTTTAAGAAACCTGCGCAGTGTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS TCA 72 bp AGGGCTTACAGTAGCTTGACAGAGAGTCCCCAGTTCTaGACAGTTTGTCAGCTCTGCTGCAGGAAGCTGGAT +
Preference number: 6 (lower is better)
Translates to: RAYSSLTESPQF*TVCQLCCRKLD
Trigger: ATCCAGCTTCCTGCAGCAGAGCTGACAAACTGTTCAGAACTGGGGACTCTCTGTCAAGCTACTGTAAGCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208429.3
CDS GCA 72 bp TCTTACTCCAATCTGAGTTGTCTGCTAGCCGAAACCTaGCACAGCAGAGGTGACGCCTCCACTGTTTCTGAA +
Preference number: 6 (lower is better)
Translates to: SYSNLSCLLAET*HSRGDASTVSE
Trigger: TTCAGAAACAGTGGAGGCGTCACCTCTGCTGTGGCAGGTTTCGGCTAGCAGACAACTCAGATTGGAGTAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 90 bp TTGCCCTCGGCTTTCAGAGCTTGGGTTGAGATGCTCCAAAAGTCATaGTGCCAGTCTATGACATTCCCAGACACACTACAGCTGAGGTTG +
Preference number: 6 (lower is better)
Translates to: LPSAFRAWVEMLQKS*CQSMTFPDTLQLRL
Trigger: CAACCTCAGCTGTAGTGTGTCTGGGAATGTCATAGACTGGCACAATGACTTTTGGAGCATCTCAACCCAAGCTCTGAAAGCCGAGGGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CCA 72 bp GCCAGTGGATCTGTCTGTCCGTTCCCGAAGTCCATCTaGAAGTACGATTCATTATTGCTTGGAAGGCCAATG +
Preference number: 6 (lower is better)
Translates to: ASGSVCPFPKSI*KYDSLLLGRPM
Trigger: CATTGGCCTTCCAAGCAATAATGAATCGTACTTCCAGATGGACTTCGGGAACGGACAGACAGATCCACTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CCA 72 bp GGAAGAGCAAGGCCGAGCTCAGATTCATCAGGATTTTaGAGGGATAATCCCTGCGCAGCTTCTCAAAAGCAA +
Preference number: 6 (lower is better)
Translates to: GRARPSSDSSGF*RDNPCAASQKQ
Trigger: TTGCTTTTGAGAAGCTGCGCAGGGATTATCCCTCCAAAATCCTGATGAATCTGAGCTCGGCCTTGCTCTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CCA 72 bp GTTAGTAACGGGGATATTAGTGGTGACAGTGGGTGGTaGAGTAGAAGGAGGGCTTACAGTAGCTTGACAGAG +
Preference number: 6 (lower is better)
Translates to: VSNGDISGDSGW*SRRRAYSSLTE
Trigger: CTCTGTCAAGCTACTGTAAGCCCTCCTTCTACTCCACCACCCACTGTCACCACTAATATCCCCGTTACTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208429.3
CDS CAA 72 bp TGCATCTCATTCACGCTGGAGTTAAATGACAGGCCCTaGGCAGTCGCTCCACAGAATTTTGTCTGGCTCTCT +
Preference number: 6 (lower is better)
Translates to: CISFTLELNDRP*AVAPQNFVWLS
Trigger: AGAGAGCCAGACAAAATTCTGTGGAGCGACTGCCAAGGGCCTGTCATTTAACTCCAGCGTGAATGAGATGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 90 bp AAGGACACATGCATCTCATTCACGCTGGAGTTAAATGACAGGCCCTaGGCAGTCGCTCCACAGAATTTTGTCTGGCTCTCTCCATTATCG +
Preference number: 6 (lower is better)
Translates to: KDTCISFTLELNDRP*AVAPQNFVWLSPLS
Trigger: CGATAATGGAGAGAGCCAGACAAAATTCTGTGGAGCGACTGCCAAGGGCCTGTCATTTAACTCCAGCGTGAATGAGATGCATGTGTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CCA 72 bp TCTGTTAGTAACGGGGATATTAGTGGTGACAGTGGGTaGTGGAGTAGAAGGAGGGCTTACAGTAGCTTGACA +
Preference number: 6 (lower is better)
Translates to: SVSNGDISGDSG*WSRRRAYSSLT
Trigger: TGTCAAGCTACTGTAAGCCCTCCTTCTACTCCACCACCCACTGTCACCACTAATATCCCCGTTACTAACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208429.3
CDS TCA 72 bp AAAGGACACATGCATCTCATTCACGCTGGAGTTAAATaGCAGGCCCTTGGCAGTCGCTCCACAGAATTTTGT +
Preference number: 6 (lower is better)
Translates to: KGHMHLIHAGVK*QALGSRSTEFC
Trigger: ACAAAATTCTGTGGAGCGACTGCCAAGGGCCTGTCATTTAACTCCAGCGTGAATGAGATGCATGTGTCCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 72 bp TGTCCTTCACAGGTAACGCATTGTTCAACAAGCATCTaGAGCCAGAGATGGACAGGAAGTAGCCATTACTGG +
Preference number: 6 (lower is better)
Translates to: CPSQVTHCSTSI*SQRWTGSSHYW
Trigger: CCAGTAATGGCTACTTCCTGTCCATCTCTGGCTCAAGATGCTTGTTGAACAATGCGTTACCTGTGAAGGACA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 72 bp GTGAAGATGTCCTCTTTGTCCTTCACAGGTAACGCATaGTTCAACAAGCATCTTGAGCCAGAGATGGACAGG +
Preference number: 6 (lower is better)
Translates to: VKMSSLSFTGNA*FNKHLEPEMDR
Trigger: CCTGTCCATCTCTGGCTCAAGATGCTTGTTGAACAATGCGTTACCTGTGAAGGACAAAGAGGACATCTTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 72 bp GCTTTCAGAGCTTGGGTTGAGATGCTCCAAAAGTCATaGTGCCAGTCTATGACATTCCCAGACACACTACAG +
Preference number: 6 (lower is better)
Translates to: AFRAWVEMLQKS*CQSMTFPDTLQ
Trigger: CTGTAGTGTGTCTGGGAATGTCATAGACTGGCACAATGACTTTTGGAGCATCTCAACCCAAGCTCTGAAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 72 bp TGCGCAGCTTCTCAAAAGCAACATATGTCAGGAGAGTaGCAGCTGAGAAAATGGCAGATATTCCGCACCCAA +
Preference number: 6 (lower is better)
Translates to: CAASQKQHMSGE*QLRKWQIFRTQ
Trigger: TTGGGTGCGGAATATCTGCCATTTTCTCAGCTGCAACTCTCCTGACATATGTTGCTTTTGAGAAGCTGCGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 90 bp TGTCCTCTTTGTCCTTCACAGGTAACGCATTGTTCAACAAGCATCTaGAGCCAGAGATGGACAGGAAGTAGCCATTACTGGCCTTTTCAA +
Preference number: 6 (lower is better)
Translates to: CPLCPSQVTHCSTSI*SQRWTGSSHYWPFQ
Trigger: TTGAAAAGGCCAGTAATGGCTACTTCCTGTCCATCTCTGGCTCAAGATGCTTGTTGAACAATGCGTTACCTGTGAAGGACAAAGAGGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 90 bp CACACAAGACAGAGCTGCTCCAAGTTTTCTGTGAAGATGTCCTCTTaGTCCTTCACAGGTAACGCATTGTTCAACAAGCATCTTGAGCCA +
Preference number: 6 (lower is better)
Translates to: HTRQSCSKFSVKMSS*SFTGNALFNKHLEP
Trigger: TGGCTCAAGATGCTTGTTGAACAATGCGTTACCTGTGAAGGACAAAGAGGACATCTTCACAGAAAACTTGGAGCAGCTCTGTCTTGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 90 bp TCATTGTGCCAGTCTATGACATTCCCAGACACACTACAGCTGAGGTaGGAGAGGGCTTTCAGATCCATGGTAAAATTCCAAAGTCGAAAG +
Preference number: 6 (lower is better)
Translates to: SLCQSMTFPDTLQLR*ERAFRSMVKFQSRK
Trigger: CTTTCGACTTTGGAATTTTACCATGGATCTGAAAGCCCTCTCCAACCTCAGCTGTAGTGTGTCTGGGAATGTCATAGACTGGCACAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CCA 72 bp GTAACGCATTGTTCAACAAGCATCTTGAGCCAGAGATaGACAGGAAGTAGCCATTACTGGCCTTTTCAAGAC +
Preference number: 6 (lower is better)
Translates to: VTHCSTSILSQR*TGSSHYWPFQD
Trigger: GTCTTGAAAAGGCCAGTAATGGCTACTTCCTGTCCATCTCTGGCTCAAGATGCTTGTTGAACAATGCGTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 72 bp CAGTCTATGACATTCCCAGACACACTACAGCTGAGGTaGGAGAGGGCTTTCAGATCCATGGTAAAATTCCAA +
Preference number: 6 (lower is better)
Translates to: QSMTFPDTLQLR*ERAFRSMVKFQ
Trigger: TTGGAATTTTACCATGGATCTGAAAGCCCTCTCCAACCTCAGCTGTAGTGTGTCTGGGAATGTCATAGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 72 bp TTGTTCACGATCCGTTTGACCTTTTCTACAATGCTGTaGATATTAGCCGAGGTGAGGTTCTGCCCATCACCA +
Preference number: 6 (lower is better)
Translates to: LFTIRLTFSTML*ILAEVRFCPSP
Trigger: TGGTGATGGGCAGAACCTCACCTCGGCTAATATCAACAGCATTGTAGAAAAGGTCAAACGGATCGTGAACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 90 bp GAGCCGAGGGTGATGTCAATGTTTTCTTCTTTGTTCACGATCCGTTaGACCTTTTCTACAATGCTGTTGATATTAGCCGAGGTGAGGTTC +
Preference number: 6 (lower is better)
Translates to: EPRVMSMFSSLFTIR*TFSTMLLILAEVRF
Trigger: GAACCTCACCTCGGCTAATATCAACAGCATTGTAGAAAAGGTCAAACGGATCGTGAACAAAGAAGAAAACATTGACATCACCCTCGGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 90 bp GAAGACAAAGATTTCCCCAGGTTATCGGAGCTCTTCTTGATGATATaGGTAGCTGTCTTACTCCAATCTGAGTTGTCTGCTAGCCGAAAC +
Preference number: 6 (lower is better)
Translates to: EDKDFPRLSELFLMI*VAVLLQSELSASRN
Trigger: GTTTCGGCTAGCAGACAACTCAGATTGGAGTAAGACAGCTACCAATATCATCAAGAAGAGCTCCGATAACCTGGGGAAATCTTTGTCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS GCA 72 bp TCTACAATGCTGTTGATATTAGCCGAGGTGAGGTTCTaGCCATCACCAGTTTGGTTTAAAATCTCATTGGCC +
Preference number: 6 (lower is better)
Translates to: STMLLILAEVRF*PSPVWFKISLA
Trigger: GGCCAATGAGATTTTAAACCAAACTGGTGATGGGCAGAACCTCACCTCGGCTAATATCAACAGCATTGTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 72 bp CAGAGCTGCTCCAAGTTTTCTGTGAAGATGTCCTCTTaGTCCTTCACAGGTAACGCATTGTTCAACAAGCAT +
Preference number: 6 (lower is better)
Translates to: QSCSKFSVKMSS*SFTGNALFNKH
Trigger: ATGCTTGTTGAACAATGCGTTACCTGTGAAGGACAAAGAGGACATCTTCACAGAAAACTTGGAGCAGCTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 72 bp AGAGTGGAGCCGAGGGTGATGTCAATGTTTTCTTCTTaGTTCACGATCCGTTTGACCTTTTCTACAATGCTG +
Preference number: 6 (lower is better)
Translates to: RVEPRVMSMFSS*FTIRLTFSTML
Trigger: CAGCATTGTAGAAAAGGTCAAACGGATCGTGAACAAAGAAGAAAACATTGACATCACCCTCGGCTCCACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 72 bp CCGTTCCCGAAGTCCATCTGGAAGTACGATTCATTATaGCTTGGAAGGCCAATGCTAAAATTTGAAGGTGCA +
Preference number: 6 (lower is better)
Translates to: PFPKSIWKYDSL*LGRPMLKFEGA
Trigger: TGCACCTTCAAATTTTAGCATTGGCCTTCCAAGCAATAATGAATCGTACTTCCAGATGGACTTCGGGAACGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 72 bp GATTTCCCCAGGTTATCGGAGCTCTTCTTGATGATATaGGTAGCTGTCTTACTCCAATCTGAGTTGTCTGCT +
Preference number: 6 (lower is better)
Translates to: DFPRLSELFLMI*VAVLLQSELSA
Trigger: AGCAGACAACTCAGATTGGAGTAAGACAGCTACCAATATCATCAAGAAGAGCTCCGATAACCTGGGGAAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 90 bp TCTGTCTGTCCGTTCCCGAAGTCCATCTGGAAGTACGATTCATTATaGCTTGGAAGGCCAATGCTAAAATTTGAAGGTGCATTTGTTCCT +
Preference number: 6 (lower is better)
Translates to: SVCPFPKSIWKYDSL*LGRPMLKFEGAFVP
Trigger: AGGAACAAATGCACCTTCAAATTTTAGCATTGGCCTTCCAAGCAATAATGAATCGTACTTCCAGATGGACTTCGGGAACGGACAGACAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 90 bp ATGGAGCTTGAAGACAAAGATTTCCCCAGGTTATCGGAGCTCTTCTaGATGATATTGGTAGCTGTCTTACTCCAATCTGAGTTGTCTGCT +
Preference number: 6 (lower is better)
Translates to: MELEDKDFPRLSELF*MILVAVLLQSELSA
Trigger: AGCAGACAACTCAGATTGGAGTAAGACAGCTACCAATATCATCAAGAAGAGCTCCGATAACCTGGGGAAATCTTTGTCTTCAAGCTCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS TCA 72 bp GAATTTTGTCTGGCTCTCTCCATTATCGAGGGACAATaGGTCATAGATACAGTTGGGAGCTTCTTCAATGTC +
Preference number: 6 (lower is better)
Translates to: EFCLALSIIEGQ*VIDTVGSFFNV
Trigger: GACATTGAAGAAGCTCCCAACTGTATCTATGACTCATTGTCCCTCGATAATGGAGAGAGCCAGACAAAATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS TCA 72 bp GGCGTTGAAACCTTTCTTCTGGATACTAAAGTCACTTaGAAAGGACACATGCATCTCATTCACGCTGGAGTT +
Preference number: 6 (lower is better)
Translates to: GVETFLLDTKVT*KGHMHLIHAGV
Trigger: AACTCCAGCGTGAATGAGATGCATGTGTCCTTTTCAAGTGACTTTAGTATCCAGAAGAAAGGTTTCAACGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS TCA 72 bp GAACGTGAGGACTTTTGTGTTTCTTCCATCTATTTGTaGGGCACTCCTTGGAAGATCCATCAGAACTCCAAA +
Preference number: 6 (lower is better)
Translates to: EREDFCVSSIYL*GTPWKIHQNSK
Trigger: TTTGGAGTTCTGATGGATCTTCCAAGGAGTGCCTCACAAATAGATGGAAGAAACACAAAAGTCCTCACGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS GCA 72 bp TTCTTCTGGATACTAAAGTCACTTGAAAAGGACACATaGATCTCATTCACGCTGGAGTTAAATGACAGGCCC +
Preference number: 6 (lower is better)
Translates to: FFWILKSLEKDT*ISFTLELNDRP
Trigger: GGGCCTGTCATTTAACTCCAGCGTGAATGAGATGCATGTGTCCTTTTCAAGTGACTTTAGTATCCAGAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 72 bp GAAGACAAAGATTTCCCCAGGTTATCGGAGCTCTTCTaGATGATATTGGTAGCTGTCTTACTCCAATCTGAG +
Preference number: 6 (lower is better)
Translates to: EDKDFPRLSELF*MILVAVLLQSE
Trigger: CTCAGATTGGAGTAAGACAGCTACCAATATCATCAAGAAGAGCTCCGATAACCTGGGGAAATCTTTGTCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 90 bp TTTTCTTCTTTGTTCACGATCCGTTTGACCTTTTCTACAATGCTGTaGATATTAGCCGAGGTGAGGTTCTGCCCATCACCAGTTTGGTTT +
Preference number: 6 (lower is better)
Translates to: FSSLFTIRLTFSTML*ILAEVRFCPSPVWF
Trigger: AAACCAAACTGGTGATGGGCAGAACCTCACCTCGGCTAATATCAACAGCATTGTAGAAAAGGTCAAACGGATCGTGAACAAAGAAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 72 bp CACCAGTTTGGTTTAAAATCTCATTGGCCACTTCATTaGATTGTCTTGAACAGTTGGAAGTGTCAACAGGGC +
Preference number: 6 (lower is better)
Translates to: HQFGLKSHWPLH*IVLNSWKCQQG
Trigger: GCCCTGTTGACACTTCCAACTGTTCAAGACAATCAAATGAAGTGGCCAATGAGATTTTAAACCAAACTGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 90 bp TTCTGTGTCTCAATGTTCACATGTGGGGTGCTATTCAGGTCTATTTaGAAGGCTAGCTCGTCAATTGTTTTTAAAGCTTCAGTAGAAGAC +
Preference number: 6 (lower is better)
Translates to: FCVSMFTCGVLFRSI*KASSSIVFKASVED
Trigger: GTCTTCTACTGAAGCTTTAAAAACAATTGACGAGCTAGCCTTCAAAATAGACCTGAATAGCACCCCACATGTGAACATTGAGACACAGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS TCA 72 bp TTGTTTTTGTTCATATCCCAGAAGGCACAGATAGGATaGTGCACTTCCTGTGTTCTGGTGTGTTTGATTTTG +
Preference number: 6 (lower is better)
Translates to: LFLFISQKAQIG*CTSCVLVCLIL
Trigger: CAAAATCAAACACACCAGAACACAGGAAGTGCATCATCCTATCTGTGCCTTCTGGGATATGAACAAAAACAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 72 bp GTGATGTCAATGTTTTCTTCTTTGTTCACGATCCGTTaGACCTTTTCTACAATGCTGTTGATATTAGCCGAG +
Preference number: 6 (lower is better)
Translates to: VMSMFSSLFTIR*TFSTMLLILAE
Trigger: CTCGGCTAATATCAACAGCATTGTAGAAAAGGTCAAACGGATCGTGAACAAAGAAGAAAACATTGACATCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS TCA 72 bp CATAAACAGTGTAGTTCCAATTCTGAAAGGTTGAATTaGGCCATTCTGCTACTTTGGTCTGCACTTTTACTT +
Preference number: 6 (lower is better)
Translates to: HKQCSSNSERLN*AILLLWSALLL
Trigger: AAGTAAAAGTGCAGACCAAAGTAGCAGAATGGCTCAATTCAACCTTTCAGAATTGGAACTACACTGTTTATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS TCA 72 bp TGCACTTCCTGTGTTCTGGTGTGTTTGATTTTGATTTaGACCGGATCTTTCAGATTCTGGATAGTAATGTTT +
Preference number: 6 (lower is better)
Translates to: CTSCVLVCLILI*TGSFRFWIVMF
Trigger: AAACATTACTATCCAGAATCTGAAAGATCCGGTTCAAATCAAAATCAAACACACCAGAACACAGGAAGTGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041168.6
ENSMUST00000208429.3
ENSMUST00000238680.2
CDS CAA 90 bp ATTGTGAATCACAACAGATATTCGATACATTATTCCGTCATTCTTTaGTTTATGGACTCTGTTAGTAACGGGGATATTAGTGGTGACAGT +
Preference number: 6 (lower is better)
Translates to: IVNHNRYSIHYSVIL*FMDSVSNGDISGDS
Trigger: ACTGTCACCACTAATATCCCCGTTACTAACAGAGTCCATAAACAAAAGAATGACGGAATAATGTATCGAATATCTGTTGTGATTCACAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208429.3