RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ADGRE1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000004730

Ensembl transcript IDs: ENSMUST00000004850.8, ENSMUST00000086763.13, ENSMUST00000232808.2, ENSMUST00000233376.2, ENSMUST00000233840.2

Found 219 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp TGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCTGTGTTTCTCCTTGGTaGATGAAACTCCTGGAGTTT +
Preference number: 2 (lower is better)
Translates to: WNTTRKCIGNTKMVISCTCVSPW*MKLLEF
Trigger: AAACTCCAGGAGTTTCATGCACCAAGGAGAAACACA...GGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
3UTR-3UTR CCA 90 bp AACACAAAAATGGTAATCTCTTGTACCGTTGAAATAGGACGTGCTCTTTTCAAATCCTGTGTTTCTCCTTaGTGCATGAAACTCCTGGAG +
Preference number: 2 (lower is better)
Translates to: NTKMVISCTVEIGRALFKSCVSP*CMKLLE
Trigger: CTCCAGGAGTTTCATGCACCAAGGAGAAACACAGGA...TTTGAAAAGAGCACGTCCTATTTCAACGGTACAAGAGATTACCATTTTTGTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
3UTR-3UTR GCA 90 bp AACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTTGTGTTTCTCCTTGGTaGATGAAACTCCTGGAGTTT +
Preference number: 2 (lower is better)
Translates to: NTTRKCIGNTKMVISCTVCVSPW*MKLLEF
Trigger: AAACTCCAGGAGTTTCATGCACCAAGGAGAAACACA...AACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
3UTR-3UTR CCA 90 bp GAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTGAAACTCCTGGAGTTTaGTTCCATCTATCCATGTTT +
Preference number: 2 (lower is better)
Translates to: EHHKKVHRKHKNGNLLYRETPGV*FHLSMF
Trigger: AAACATGGATAGATGGAACCAAACTCCAGGAGTTTC...ACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
3UTR-3UTR CCA 90 bp GAGAATTTCTGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCGAAACTCCTGGAGTTTaGTTCCATCTATCCATGTTT +
Preference number: 2 (lower is better)
Translates to: ENFWNTTRKCIGNTKMVIETPGV*FHLSMF
Trigger: AAACATGGATAGATGGAACCAAACTCCAGGAGTTTC...GATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCAGAAATTCTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
3UTR-3UTR CCA 90 bp AACACAAAAATGGTAATCTCTTGTACCGTTGAAATAGGACGTGCTCTTTTCAAATCTTTTCAAAACATGTaGAGCTTCATAGTTGTAAGG +
Preference number: 2 (lower is better)
Translates to: NTKMVISCTVEIGRALFKSFQNM*SFIVVR
Trigger: CCTTACAACTATGAAGCTCCACATGTTTTGAAAAGA...TTTGAAAAGAGCACGTCCTATTTCAACGGTACAAGAGATTACCATTTTTGTGTT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
3UTR TCA 72 bp TATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCATaGAACTCCTGGAGTTTGGTTCCATCTATCCATGTT +
Preference number: 3 (lower is better)
Translates to: YLGRYPVFLLGA*NSWSLVPSIHV
Trigger: AACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACAGGATATCTACCCAAATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
3UTR-3UTR CAA 90 bp ACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTGAAATCCTGTGTTTCTCCTaGGTGCATGAAACTCCTGGA +
Preference number: 3 (lower is better)
Translates to: TTRKCIGNTKMVISCTVEILCFS*VHETPG
Trigger: TCCAGGAGTTTCATGCACCAAGGAGAAACACAGGAT...TTCAACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
3UTR TCA 72 bp GAGTTAGTCTGTGTTTACTGCTTGATGGGTATTAAATaGGAATTTCTGGAACACCACAAGAAAGTGCATAGG +
Preference number: 3 (lower is better)
Translates to: ELVCVYCLMGIK*EFLEHHKKVHR
Trigger: CCTATGCACTTTCTTGTGGTGTTCCAGAAATTCTCATTTAATACCCATCAAGCAGTAAACACAGACTAACTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp CTGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTGTCTGTGGTGTCAGTaGAGGTGGCATAAGCTGGGC +
Preference number: 4 (lower is better)
Translates to: LCFSLVHETPGVWFHLSMCLWCQ*RWHKLG
Trigger: GCCCAGCTTATGCCACCTGCACTGACACCACAGACA...CATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp TCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTGAGTGTCTGTGGTGTCAGTaGAGGTGGCATAAGCTGGGC +
Preference number: 4 (lower is better)
Translates to: SPWCMKLLEFGSIYPCFECLWCQ*RWHKLG
Trigger: GCCCAGCTTATGCCACCTGCACTGACACCACAGACA...CTCAAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp TGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTCTCCCCGGTCACAGTaGCACCAACAACACGGGAAT +
Preference number: 4 (lower is better)
Translates to: CVSPWCMKLLEFGSIYPCSPRSQ*HQQHGN
Trigger: ATTCCCGTGTTGTTGGTGGCACTGTGACCGGGGAGA...ACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp TCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTGAGTGGTGTCAGTGCAGGTaGCATAAGCTGGGCAAGTGG +
Preference number: 4 (lower is better)
Translates to: SPWCMKLLEFGSIYPCFEWCQCR*HKLGKW
Trigger: CCACTTGCCCAGCTTATGCCACCTGCACTGACACCA...CTCAAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp CTGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGCTTCCGAGAGTGTTGTaGCAGGTTGCATGTTCAGGG +
Preference number: 4 (lower is better)
Translates to: LCFSLVHETPGVWFHLSMLPRVL*QVACSG
Trigger: CCCTGAACATGCAACCTGCCACAACACTCTCGGAAG...CATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp TGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTGGGACCACAGAGAGTTaGATTCCTGGAGCACTCATC +
Preference number: 4 (lower is better)
Translates to: CVSPWCMKLLEFGSIYPCGTTES*IPGALI
Trigger: GATGAGTGCTCCAGGAATTCAACTCTCTGTGGTCCC...ACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp CTGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGCTGTCCATTGCTAGATaGAAAGCCAGGGTGGCAAGT +
Preference number: 4 (lower is better)
Translates to: LCFSLVHETPGVWFHLSMLSIAR*KARVAS
Trigger: ACTTGCCACCCTGGCTTTGCATCTAGCAATGGACAG...CATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp GTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTATCTGTACATCCCACTaGAGCCCCAGAAGAGGAGCA +
Preference number: 4 (lower is better)
Translates to: VSPWCMKLLEFGSIYPCFICTSH*SPRRGA
Trigger: TGCTCCTCTTCTGGGGCTTCAGTGGGATGTACAGAT...AAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp CTGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTCCATGTGTGCAAATaGGACAAAAGCCACTCCTGG +
Preference number: 4 (lower is better)
Translates to: LCFSLVHETPGVWFHLSMFHVCK*DKSHSW
Trigger: CCAGGAGTGGCTTTTGTCTCATTTGCACACATGGAA...CATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp GTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTATCCCTGCCCTGCACTaGTTGGCATTGCTGTATCTG +
Preference number: 4 (lower is better)
Translates to: VSPWCMKLLEFGSIYPCFIPALH*LALLYL
Trigger: CAGATACAGCAATGCCAAGCAGTGCAGGGCAGGGAT...AAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp AGGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCACCATCCGGTTACAGCTaGAGACTGTGTGTGTCTCGG +
Preference number: 4 (lower is better)
Translates to: RHKRQTYLGRYPVFLLGAPSGYS*RLCVSR
Trigger: CCGAGACACACACAGTCTGCAGCTGTAACCGGATGG...TGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp AAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTGAGAATCTTCAGACATTGGGCCAATCTGGAAAATaGCCAGCACCCAGGAGCAGC +
Preference number: 4 (lower is better)
Translates to: KLLEFGSIYPCFENLQTLGQSGK*PAPRSS
Trigger: GCTGCTCCTGGGTGCTGGGCATTTTCCAGATTGGCC...CAATGTCTGAAGATTCTCAAAACATGGATAGATGGAACCAAACTCCAGGAGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004850.8
CDS-3UTR CCA 90 bp TGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTGCAGGTGGCATAAGCTaGGCAAGTGGTAGTATCTTG +
Preference number: 4 (lower is better)
Translates to: CVSPWCMKLLEFGSIYPCAGGIS*ASGSIL
Trigger: CAAGATACTACCACTTGCCCAGCTTATGCCACCTGC...ACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp TGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTAGCTTCCGGAAGGACTaGCCATCTTCAAAGAAGCGT +
Preference number: 4 (lower is better)
Translates to: CVSPWCMKLLEFGSIYPCSFRKD*PSSKKR
Trigger: ACGCTTCTTTGAAGATGGCCAGTCCTTCCGGAAGCT...ACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp GTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTGCAGGAAGGTGGCTATaGCCAAGGCAAGACATACCA +
Preference number: 4 (lower is better)
Translates to: VSPWCMKLLEFGSIYPCFAGRWL*PRQDIP
Trigger: TGGTATGTCTTGCCTTGGCCATAGCCACCTTCCTGC...AAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp GAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTGCCAAGGGGCCAATCTaGAAAATGCCCAGCACCCAG +
Preference number: 4 (lower is better)
Translates to: EHHKKVHRKHKNGNLLYRAKGPI*KMPSTQ
Trigger: CTGGGTGCTGGGCATTTTCCAGATTGGCCCCTTGGC...ACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp TGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGCCAAGGGGCCAATCTaGAAAATGCCCAGCACCCAG +
Preference number: 4 (lower is better)
Translates to: WNTTRKCIGNTKMVISCTAKGPI*KMPSTQ
Trigger: CTGGGTGCTGGGCATTTTCCAGATTGGCCCCTTGGC...GGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp GGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCATATCTGTACATCCCACTaGAGCCCCAGAAGAGGAGCA +
Preference number: 4 (lower is better)
Translates to: GTKDKLIWVDILCFSLVHICTSH*SPRRGA
Trigger: TGCTCCTCTTCTGGGGCTTCAGTGGGATGTACAGAT...ATGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp TCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTGAGCATTCGTTAACATCTTaGCATTCCACTCCTGGGCCT +
Preference number: 4 (lower is better)
Translates to: SPWCMKLLEFGSIYPCFEHSLTS*HSTPGP
Trigger: AGGCCCAGGAGTGGAATGTCAAGATGTTAACGAATG...CTCAAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp GGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCATCCTTCTGGATCCATTTaGAAGTCAGGGAGGCAGCCA +
Preference number: 4 (lower is better)
Translates to: GTKDKLIWVDILCFSLVHPSGSI*KSGRQP
Trigger: TGGCTGCCTCCCTGACTTTCAAATGGATCCAGAAGG...ATGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp AGGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCAATGTCTCCTCCTTGCTaGGCTCAAACCATGTGGTCG +
Preference number: 4 (lower is better)
Translates to: RHKRQTYLGRYPVFLLGAMSPPC*AQTMWS
Trigger: CGACCACATGGTTTGAGCTCAGCAAGGAGGAGACAT...TGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp AGGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCAATCCCTGCCCTGCACTaGTTGGCATTGCTGTATCTG +
Preference number: 4 (lower is better)
Translates to: RHKRQTYLGRYPVFLLGAIPALH*LALLYL
Trigger: CAGATACAGCAATGCCAAGCAGTGCAGGGCAGGGAT...TGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp GAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTCTCCCCGGTCACAGTaGCACCAACAACACGGGAAT +
Preference number: 4 (lower is better)
Translates to: EHHKKVHRKHKNGNLLYRSPRSQ*HQQHGN
Trigger: ATTCCCGTGTTGTTGGTGGCACTGTGACCGGGGAGA...ACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp GAGAATTTCTGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCGGCCAATCTGGAAAATaGCCAGCACCCAGGAGCAGC +
Preference number: 4 (lower is better)
Translates to: ENFWNTTRKCIGNTKMVIGQSGK*PAPRSS
Trigger: GCTGCTCCTGGGTGCTGGGCATTTTCCAGATTGGCC...GATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCAGAAATTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp TGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTAATGGTGAACAGGTATaGCATGATGCTTGCCAAGGG +
Preference number: 4 (lower is better)
Translates to: CVSPWCMKLLEFGSIYPCNGEQV*HDACQG
Trigger: CCCTTGGCAAGCATCATGGCATACCTGTTCACCATT...ACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp TCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTGAGTGGTTTGTCCATTGCTaGACAGGAAGCCTCGTTTAC +
Preference number: 4 (lower is better)
Translates to: SPWCMKLLEFGSIYPCFEWFVHC*TGSLVY
Trigger: GTAAACGAGGCTTCCTGTCCAGCAATGGACAAACCA...CTCAAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp GGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCATCTCAGACTTCTGCTTTaGCTGGATGTGCTGGAGGGT +
Preference number: 4 (lower is better)
Translates to: GTKDKLIWVDILCFSLVHLRLLL*LDVLEG
Trigger: ACCCTCCAGCACATCCAGCCAAAGCAGAAGTCTGAG...ATGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp AGGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCATCCACTCCTGGGCCTTaGAAGTTGGTTTGTCCATTG +
Preference number: 4 (lower is better)
Translates to: RHKRQTYLGRYPVFLLGASTPGP*KLVCPL
Trigger: CAATGGACAAACCAACTTTCAAGGCCCAGGAGTGGA...TGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp GAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTCCTTCTGGATCCATTTaGAAGTCAGGGAGGCAGCCA +
Preference number: 4 (lower is better)
Translates to: EHHKKVHRKHKNGNLLYRPSGSI*KSGRQP
Trigger: TGGCTGCCTCCCTGACTTTCAAATGGATCCAGAAGG...ACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp TGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCAGGAGCAGCCCAAGATaGAAATCTGGGCAATGGCCT +
Preference number: 4 (lower is better)
Translates to: WNTTRKCIGNTKMVISCTRSSPR*KSGQWP
Trigger: AGGCCATTGCCCAGATTTTCATCTTGGGCTGCTCCT...GGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp GTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTAGTTGGTTTGTCCATTaGTGGACAGGAAGCCTCGTT +
Preference number: 4 (lower is better)
Translates to: VSPWCMKLLEFGSIYPCFSWFVH*WTGSLV
Trigger: AACGAGGCTTCCTGTCCAGCAATGGACAAACCAACT...AAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp GAGAATTTCTGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCCCATCCGGTTACAGCTaGAGACTGTGTGTGTCTCGG +
Preference number: 4 (lower is better)
Translates to: ENFWNTTRKCIGNTKMVIPSGYS*RLCVSR
Trigger: CCGAGACACACACAGTCTGCAGCTGTAACCGGATGG...GATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCAGAAATTCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp TGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTGACATTCCACTCCTaGGCCTTGAAAGTTGGTTTG +
Preference number: 4 (lower is better)
Translates to: CVSPWCMKLLEFGSIYPCLTFHS*ALKVGL
Trigger: CAAACCAACTTTCAAGGCCCAGGAGTGGAATGTCAA...ACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp CTGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGAGAGAGTTGAATTCCTaGAGCACTCATCCACATCTT +
Preference number: 4 (lower is better)
Translates to: LCFSLVHETPGVWFHLSMRELNS*STHPHL
Trigger: AAGATGTGGATGAGTGCTCCAGGAATTCAACTCTCT...CATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp GGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCATAGCTTCCGGAAGGACTaGCCATCTTCAAAGAAGCGT +
Preference number: 4 (lower is better)
Translates to: GTKDKLIWVDILCFSLVHSFRKD*PSSKKR
Trigger: ACGCTTCTTTGAAGATGGCCAGTCCTTCCGGAAGCT...ATGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp AAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTGAGAATCTTCAGACATTGCTCAGACTTCTGCTTTaGCTGGATGTGCTGGAGGGT +
Preference number: 4 (lower is better)
Translates to: KLLEFGSIYPCFENLQTLLRLLL*LDVLEG
Trigger: ACCCTCCAGCACATCCAGCCAAAGCAGAAGTCTGAG...CAATGTCTGAAGATTCTCAAAACATGGATAGATGGAACCAAACTCCAGGAGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004850.8
CDS-3UTR CCA 90 bp CTGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGATGACTGTACCCACATaGCTGATGATATACAAGGAG +
Preference number: 4 (lower is better)
Translates to: LCFSLVHETPGVWFHLSMMTVPT*LMIYKE
Trigger: CTCCTTGTATATCATCAGCCATGTGGGTACAGTCAT...CATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp GAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTATGACCACCAGGACTaGAAGCCCATAGCCAAAGGC +
Preference number: 4 (lower is better)
Translates to: EHHKKVHRKHKNGNLLYRYDHQD*KPIAKG
Trigger: GCCTTTGGCTATGGGCTTCCAGTCCTGGTGGTCATA...ACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp TGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCTCCACTCCTGGGCCTTaGAAGTTGGTTTGTCCATTG +
Preference number: 4 (lower is better)
Translates to: WNTTRKCIGNTKMVISCTSTPGP*KLVCPL
Trigger: CAATGGACAAACCAACTTTCAAGGCCCAGGAGTGGA...GGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp ACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTGAAGGGACCACAGAGAGTTaGATTCCTGGAGCACTCATC +
Preference number: 4 (lower is better)
Translates to: TTRKCIGNTKMVISCTVEGTTES*IPGALI
Trigger: GATGAGTGCTCCAGGAATTCAACTCTCTGTGGTCCC...TTCAACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp ACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTGAAATGTCTCCTCCTTGCTaGGCTCAAACCATGTGGTCG +
Preference number: 4 (lower is better)
Translates to: TTRKCIGNTKMVISCTVEMSPPC*AQTMWS
Trigger: CGACCACATGGTTTGAGCTCAGCAAGGAGGAGACAT...TTCAACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp AGGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCAGAGTTTAGAGACTTCTaGGCTGACACTGCAGAGCTT +
Preference number: 4 (lower is better)
Translates to: RHKRQTYLGRYPVFLLGAEFRDF*ADTAEL
Trigger: AAGCTCTGCAGTGTCAGCTCAGAAGTCTCTAAACTC...TGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp GGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCATAGCCTGGTACATTGGTaGAGACAGAATTCAGTCCAC +
Preference number: 4 (lower is better)
Translates to: GTKDKLIWVDILCFSLVHSLVHW*RQNSVH
Trigger: GTGGACTGAATTCTGTCTGCACCAATGTACCAGGCT...ATGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp GAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTCCAAAGGCACAGAGGTaGAGCATCTTGATGTTGCGA +
Preference number: 4 (lower is better)
Translates to: EHHKKVHRKHKNGNLLYRPKAQR*SILMLR
Trigger: TCGCAACATCAAGATGCTGCACCTCTGTGCCTTTGG...ACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp AGGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCAAATGGTGAACAGGTATaGCATGATGCTTGCCAAGGG +
Preference number: 4 (lower is better)
Translates to: RHKRQTYLGRYPVFLLGANGEQV*HDACQG
Trigger: CCCTTGGCAAGCATCATGGCATACCTGTTCACCATT...TGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp GTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTAAGATGAAAGCCCCCTaGAGACTGTTGATAATGGTG +
Preference number: 4 (lower is better)
Translates to: VSPWCMKLLEFGSIYPCFKMKAP*RLLIMV
Trigger: CACCATTATCAACAGTCTGCAGGGGGCTTTCATCTT...AAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp AACACAAAAATGGTAATCTCTTGTACCGTTGAAATAGGACGTGCTCTTTTCAAATGGTGTCAGTGCAGGTaGCATAAGCTGGGCAAGTGG +
Preference number: 4 (lower is better)
Translates to: NTKMVISCTVEIGRALFKWCQCR*HKLGKW
Trigger: CCACTTGCCCAGCTTATGCCACCTGCACTGACACCA...TTTGAAAAGAGCACGTCCTATTTCAACGGTACAAGAGATTACCATTTTTGTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp GTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTAGTAATAACTGTCTGTaGTGTCAGTGCAGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: VSPWCMKLLEFGSIYPCFSNNCL*CQCRWH
Trigger: ATGCCACCTGCACTGACACCACAGACAGTTATTACT...AAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp AGGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCATCCTTGGGAGCCTTCTaGATCCATTTGAAAGTCAGG +
Preference number: 4 (lower is better)
Translates to: RHKRQTYLGRYPVFLLGASLGAF*IHLKVR
Trigger: CCTGACTTTCAAATGGATCCAGAAGGCTCCCAAGGA...TGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp TGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTAAGTTTCCATATCCTTaGGAGCCTTCTGGATCCATT +
Preference number: 4 (lower is better)
Translates to: CVSPWCMKLLEFGSIYPCKFPYP*EPSGSI
Trigger: AATGGATCCAGAAGGCTCCCAAGGATATGGAAACTT...ACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp GAGAATTTCTGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCCTGCCCTGCACTGCTTaGCATTGCTGTATCTGCTCA +
Preference number: 4 (lower is better)
Translates to: ENFWNTTRKCIGNTKMVILPCTA*HCCICS
Trigger: TGAGCAGATACAGCAATGCCAAGCAGTGCAGGGCAG...GATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCAGAAATTCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp GAGAATTTCTGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTATGACCACCAGGACTaGAAGCCCATAGCCAAAGGC +
Preference number: 4 (lower is better)
Translates to: ENFWNTTRKCIGNTKMVIYDHQD*KPIAKG
Trigger: GCCTTTGGCTATGGGCTTCCAGTCCTGGTGGTCATA...GATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCAGAAATTCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp TGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTCAAGGTGAGTCACTTTaGAGACATTCGTTAACATCT +
Preference number: 4 (lower is better)
Translates to: CVSPWCMKLLEFGSIYPCQGESL*RHSLTS
Trigger: AGATGTTAACGAATGTCTTCAAAGTGACTCACCTTG...ACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp GGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCATGGATCCTTTTGCAGTTaGAGTTTCCATATCCTTGGG +
Preference number: 4 (lower is better)
Translates to: GTKDKLIWVDILCFSLVHGSFCS*SFHILG
Trigger: CCCAAGGATATGGAAACTTCAACTGCAAAAGGATCC...ATGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp GAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTCTTGTCTATACCGGTaGGGAAGAGAATCTTGGCCA +
Preference number: 4 (lower is better)
Translates to: EHHKKVHRKHKNGNLLYRSCLYR*GRESWP
Trigger: TGGCCAAGATTCTCTTCCTCACCGGTATAGACAAGA...ACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp TGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCTCTTGTCTATACCGGTaGGGAAGAGAATCTTGGCCA +
Preference number: 4 (lower is better)
Translates to: WNTTRKCIGNTKMVISCTSCLYR*GRESWP
Trigger: TGGCCAAGATTCTCTTCCTCACCGGTATAGACAAGA...GGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp AACACAAAAATGGTAATCTCTTGTACCGTTGAAATAGGACGTGCTCTTTTCAAAAGGAGCAGCCCAAGATaGAAATCTGGGCAATGGCCT +
Preference number: 4 (lower is better)
Translates to: NTKMVISCTVEIGRALFKRSSPR*KSGQWP
Trigger: AGGCCATTGCCCAGATTTTCATCTTGGGCTGCTCCT...TTTGAAAAGAGCACGTCCTATTTCAACGGTACAAGAGATTACCATTTTTGTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp TCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTGAGGTAATGGATCTTGGGTaGACTCATCAATATCTTCAC +
Preference number: 4 (lower is better)
Translates to: SPWCMKLLEFGSIYPCFEVMDLG*THQYLH
Trigger: GTGAAGATATTGATGAGTGCACCCAAGATCCATTAC...CTCAAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp ACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTGAACATAACCAAGATCCCTaGCCTGCACTGCTTGGCATT +
Preference number: 4 (lower is better)
Translates to: TTRKCIGNTKMVISCTVEHNQDP*PALLGI
Trigger: AATGCCAAGCAGTGCAGGGCAGGGATCTTGGTTATG...TTCAACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp AACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTCATAACCAAGATCCCTaGCCTGCACTGCTTGGCATT +
Preference number: 4 (lower is better)
Translates to: NTTRKCIGNTKMVISCTVHNQDP*PALLGI
Trigger: AATGCCAAGCAGTGCAGGGCAGGGATCTTGGTTATG...AACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp GAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTCTTGTCCCCTCTGGCTaGCAAGTTAATGGACTCATT +
Preference number: 4 (lower is better)
Translates to: EHHKKVHRKHKNGNLLYRLVPSG*QVNGLI
Trigger: AATGAGTCCATTAACTTGGCAGCCAGAGGGGACAAG...ACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp AACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTCCAAAGGCACAGAGGTaGAGCATCTTGATGTTGCGA +
Preference number: 4 (lower is better)
Translates to: NTTRKCIGNTKMVISCTVPKAQR*SILMLR
Trigger: TCGCAACATCAAGATGCTGCACCTCTGTGCCTTTGG...AACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp GAGAATTTCTGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCGCAGGTGGCATAAGCTaGGCAAGTGGTAGTATCTTG +
Preference number: 4 (lower is better)
Translates to: ENFWNTTRKCIGNTKMVIAGGIS*ASGSIL
Trigger: CAAGATACTACCACTTGCCCAGCTTATGCCACCTGC...GATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCAGAAATTCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp TGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCTGGTTTGTCCATTGCTaGACAGGAAGCCTCGTTTAC +
Preference number: 4 (lower is better)
Translates to: WNTTRKCIGNTKMVISCTWFVHC*TGSLVY
Trigger: GTAAACGAGGCTTCCTGTCCAGCAATGGACAAACCA...GGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp TGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCCTGGGCCTTGAAAGTTaGTTTGTCCATTGCTGGACA +
Preference number: 4 (lower is better)
Translates to: WNTTRKCIGNTKMVISCTLGLES*FVHCWT
Trigger: TGTCCAGCAATGGACAAACCAACTTTCAAGGCCCAG...GGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp AACACAAAAATGGTAATCTCTTGTACCGTTGAAATAGGACGTGCTCTTTTCAAACTTCCGAGAGTGTTGTaGCAGGTTGCATGTTCAGGG +
Preference number: 4 (lower is better)
Translates to: NTKMVISCTVEIGRALFKLPRVL*QVACSG
Trigger: CCCTGAACATGCAACCTGCCACAACACTCTCGGAAG...TTTGAAAAGAGCACGTCCTATTTCAACGGTACAAGAGATTACCATTTTTGTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp GTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTAAGGATCTGAAAAGTTaGCAAAGAGAATCCAGCTGG +
Preference number: 4 (lower is better)
Translates to: VSPWCMKLLEFGSIYPCFKDLKS*QRESSW
Trigger: CCAGCTGGATTCTCTTTGCCAACTTTTCAGATCCTT...AAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp TGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCAGGAGCCTGGTACATTaGTGCAGACAGAATTCAGTC +
Preference number: 4 (lower is better)
Translates to: WNTTRKCIGNTKMVISCTRSLVH*CRQNSV
Trigger: GACTGAATTCTGTCTGCACCAATGTACCAGGCTCCT...GGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp GAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTAGGAGCCTGGTACATTaGTGCAGACAGAATTCAGTC +
Preference number: 4 (lower is better)
Translates to: EHHKKVHRKHKNGNLLYRRSLVH*CRQNSV
Trigger: GACTGAATTCTGTCTGCACCAATGTACCAGGCTCCT...ACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp GAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTCCTTGGGAGCCTTCTaGATCCATTTGAAAGTCAGG +
Preference number: 4 (lower is better)
Translates to: EHHKKVHRKHKNGNLLYRSLGAF*IHLKVR
Trigger: CCTGACTTTCAAATGGATCCAGAAGGCTCCCAAGGA...ACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp AACACAAAAATGGTAATCTCTTGTACCGTTGAAATAGGACGTGCTCTTTTCAAAGCAGGAAGGTGGCTATaGCCAAGGCAAGACATACCA +
Preference number: 4 (lower is better)
Translates to: NTKMVISCTVEIGRALFKAGRWL*PRQDIP
Trigger: TGGTATGTCTTGCCTTGGCCATAGCCACCTTCCTGC...TTTGAAAAGAGCACGTCCTATTTCAACGGTACAAGAGATTACCATTTTTGTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp AAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTGAGAATCTTCAGACATTGCCCAAGATGAAAATCTaGGCAATGGCCTTGAAGGTC +
Preference number: 4 (lower is better)
Translates to: KLLEFGSIYPCFENLQTLPKMKI*AMALKV
Trigger: GACCTTCAAGGCCATTGCCCAGATTTTCATCTTGGG...CAATGTCTGAAGATTCTCAAAACATGGATAGATGGAACCAAACTCCAGGAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004850.8
3UTR CAA 72 bp GACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTaGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTA +
Preference number: 4 (lower is better)
Translates to: DKLIWVDILCFS*VHETPGVWFHL
Trigger: TAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp GTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTCAAGGTGAGTCACTTTaGAGACATTCGTTAACATCT +
Preference number: 4 (lower is better)
Translates to: VSPWCMKLLEFGSIYPCFQGESL*RHSLTS
Trigger: AGATGTTAACGAATGTCTTCAAAGTGACTCACCTTG...AAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp AAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTGAGAATCTTCAGACATTGGGATGGCCAAGGATCTaGAAAGTTGGCAAAGAGAAT +
Preference number: 4 (lower is better)
Translates to: KLLEFGSIYPCFENLQTLGWPRI*KVGKEN
Trigger: ATTCTCTTTGCCAACTTTTCAGATCCTTGGCCATCC...CAATGTCTGAAGATTCTCAAAACATGGATAGATGGAACCAAACTCCAGGAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004850.8
CDS-3UTR TCA 90 bp GAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTGGATCCTTTTGCAGTTaGAGTTTCCATATCCTTGGG +
Preference number: 4 (lower is better)
Translates to: EHHKKVHRKHKNGNLLYRGSFCS*SFHILG
Trigger: CCCAAGGATATGGAAACTTCAACTGCAAAAGGATCC...ACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp GTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTGGCCCCTGTAGATACTaGTTCTTTGATTATGAAACA +
Preference number: 4 (lower is better)
Translates to: VSPWCMKLLEFGSIYPCFGPCRY*FFDYET
Trigger: TGTTTCATAATCAAAGAATCAGTATCTACAGGGGCC...AAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp AACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTGAGTTTAGAGACTTCTaGGCTGACACTGCAGAGCTT +
Preference number: 4 (lower is better)
Translates to: NTTRKCIGNTKMVISCTVEFRDF*ADTAEL
Trigger: AAGCTCTGCAGTGTCAGCTCAGAAGTCTCTAAACTC...AACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp ACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTGAAAGTTGGTTTGTCCATTaGTGGACAGGAAGCCTCGTT +
Preference number: 4 (lower is better)
Translates to: TTRKCIGNTKMVISCTVESWFVH*WTGSLV
Trigger: AACGAGGCTTCCTGTCCAGCAATGGACAAACCAACT...TTCAACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp AACACAAAAATGGTAATCTCTTGTACCGTTGAAATAGGACGTGCTCTTTTCAAACTGTCCATTGCTAGATaGAAAGCCAGGGTGGCAAGT +
Preference number: 4 (lower is better)
Translates to: NTKMVISCTVEIGRALFKLSIAR*KARVAS
Trigger: ACTTGCCACCCTGGCTTTGCATCTAGCAATGGACAG...TTTGAAAAGAGCACGTCCTATTTCAACGGTACAAGAGATTACCATTTTTGTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp ACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTGAAAGCCTGGTACATTGGTaGAGACAGAATTCAGTCCAC +
Preference number: 4 (lower is better)
Translates to: TTRKCIGNTKMVISCTVESLVHW*RQNSVH
Trigger: GTGGACTGAATTCTGTCTGCACCAATGTACCAGGCT...TTCAACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp GAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTAAGATGAAAGCCCCCTaGAGACTGTTGATAATGGTG +
Preference number: 4 (lower is better)
Translates to: EHHKKVHRKHKNGNLLYRKMKAP*RLLIMV
Trigger: CACCATTATCAACAGTCTGCAGGGGGCTTTCATCTT...ACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp ACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTGAACTGGGCCTTGAAAGTTaGTTTGTCCATTGCTGGACA +
Preference number: 4 (lower is better)
Translates to: TTRKCIGNTKMVISCTVELGLES*FVHCWT
Trigger: TGTCCAGCAATGGACAAACCAACTTTCAAGGCCCAG...TTCAACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp GGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCATATTCAAGACAAAGCCTaGTTGACAGGTACAGCTGTA +
Preference number: 4 (lower is better)
Translates to: GTKDKLIWVDILCFSLVHIQDKA*LTGTAV
Trigger: TACAGCTGTACCTGTCAACCAGGCTTTGTCTTGAAT...ATGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp AGGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCAAAGTTTCCATATCCTTaGGAGCCTTCTGGATCCATT +
Preference number: 4 (lower is better)
Translates to: RHKRQTYLGRYPVFLLGAKFPYP*EPSGSI
Trigger: AATGGATCCAGAAGGCTCCCAAGGATATGGAAACTT...TGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp GAGAATTTCTGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCCCCAAGATGAAAATCTaGGCAATGGCCTTGAAGGTC +
Preference number: 4 (lower is better)
Translates to: ENFWNTTRKCIGNTKMVIPKMKI*AMALKV
Trigger: GACCTTCAAGGCCATTGCCCAGATTTTCATCTTGGG...GATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCAGAAATTCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp ACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTGAAGGATGGCCAAGGATCTaGAAAGTTGGCAAAGAGAAT +
Preference number: 4 (lower is better)
Translates to: TTRKCIGNTKMVISCTVEGWPRI*KVGKEN
Trigger: ATTCTCTTTGCCAACTTTTCAGATCCTTGGCCATCC...TTCAACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp AACACAAAAATGGTAATCTCTTGTACCGTTGAAATAGGACGTGCTCTTTTCAAATTCCATGTGTGCAAATaGGACAAAAGCCACTCCTGG +
Preference number: 4 (lower is better)
Translates to: NTKMVISCTVEIGRALFKFHVCK*DKSHSW
Trigger: CCAGGAGTGGCTTTTGTCTCATTTGCACACATGGAA...TTTGAAAAGAGCACGTCCTATTTCAACGGTACAAGAGATTACCATTTTTGTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp GGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCATGTAATGGATCTTGGGTaGACTCATCAATATCTTCAC +
Preference number: 4 (lower is better)
Translates to: GTKDKLIWVDILCFSLVHVMDLG*THQYLH
Trigger: GTGAAGATATTGATGAGTGCACCCAAGATCCATTAC...ATGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp AACACAAAAATGGTAATCTCTTGTACCGTTGAAATAGGACGTGCTCTTTTCAAACTTGTCCCCTCTGGCTaGCAAGTTAATGGACTCATT +
Preference number: 4 (lower is better)
Translates to: NTKMVISCTVEIGRALFKLVPSG*QVNGLI
Trigger: AATGAGTCCATTAACTTGGCAGCCAGAGGGGACAAG...TTTGAAAAGAGCACGTCCTATTTCAACGGTACAAGAGATTACCATTTTTGTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp GAGAATTTCTGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTTGACATTCCACTCCTaGGCCTTGAAAGTTGGTTTG +
Preference number: 4 (lower is better)
Translates to: ENFWNTTRKCIGNTKMVILTFHS*ALKVGL
Trigger: CAAACCAACTTTCAAGGCCCAGGAGTGGAATGTCAA...GATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCAGAAATTCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp TGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCAGAGAGTTGAATTCCTaGAGCACTCATCCACATCTT +
Preference number: 4 (lower is better)
Translates to: WNTTRKCIGNTKMVISCTRELNS*STHPHL
Trigger: AAGATGTGGATGAGTGCTCCAGGAATTCAACTCTCT...GGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp AAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTGAGAATCTTCAGACATTGATGACTGTACCCACATaGCTGATGATATACAAGGAG +
Preference number: 4 (lower is better)
Translates to: KLLEFGSIYPCFENLQTLMTVPT*LMIYKE
Trigger: CTCCTTGTATATCATCAGCCATGTGGGTACAGTCAT...CAATGTCTGAAGATTCTCAAAACATGGATAGATGGAACCAAACTCCAGGAGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004850.8
CDS-3UTR CCA 90 bp AACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTATTCAAGACAAAGCCTaGTTGACAGGTACAGCTGTA +
Preference number: 4 (lower is better)
Translates to: NTTRKCIGNTKMVISCTVIQDKA*LTGTAV
Trigger: TACAGCTGTACCTGTCAACCAGGCTTTGTCTTGAAT...AACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR TCA 90 bp GAGAATTTCTGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCGGCCCCTGTAGATACTaGTTCTTTGATTATGAAACA +
Preference number: 4 (lower is better)
Translates to: ENFWNTTRKCIGNTKMVIGPCRY*FFDYET
Trigger: TGTTTCATAATCAAAGAATCAGTATCTACAGGGGCC...GATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCAGAAATTCTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR GCA 90 bp GAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTACACTCATCAACATCTaGGCAGAGAAAATTATCCAA +
Preference number: 4 (lower is better)
Translates to: EHHKKVHRKHKNGNLLYRTLINI*AEKIIQ
Trigger: TTGGATAATTTTCTCTGCGCAGATGTTGATGAGTGT...ACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CCA 90 bp AACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTTGTATCTGCTCACTTTaGAGTATCAAGTCTTCCTTA +
Preference number: 4 (lower is better)
Translates to: NTTRKCIGNTKMVISCTVCICSL*SIKSSL
Trigger: TAAGGAAGACTTGATACTCCAAAGTGAGCAGATACA...AACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS GCA 90 bp CAAGTTTGCCATCCGGTTACAGCTGCAGACTGTGTGTGTCTCGGATaGTTCCACAATCTCACAGCCCGAGGGTGTCCATCTCCCATCCTC +
Preference number: 5 (lower is better)
Translates to: QVCHPVTAADCVCLG*FHNLTARGCPSPIL
Trigger: GAGGATGGGAGATGGACACCCTCGGGCTGTGAGATTGTGGAAGCATCCGAGACACACACAGTCTGCAGCTGTAACCGGATGGCAAACTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS TCA 90 bp GATTATGCATCCCATAGCCCCGTGGCTGTACAGAAGCAGAGATTATaGCCACCAGGACTGGAAGCCCATAGCCAAAGGCACAGAGGTGCA +
Preference number: 5 (lower is better)
Translates to: DYASHSPVAVQKQRL*PPGLEAHSQRHRGA
Trigger: TGCACCTCTGTGCCTTTGGCTATGGGCTTCCAGTCCTGGTGGTCATAATCTCTGCTTCTGTACAGCCACGGGGCTATGGGATGCATAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CCA 90 bp CGTCTCTGTATTCAACCAGCAGCGATTATGCATCCCATAGCCCCGTaGCTGTACAGAAGCAGAGATTATGACCACCAGGACTGGAAGCCC +
Preference number: 5 (lower is better)
Translates to: RLCIQPAAIMHPIAP*LYRSRDYDHQDWKP
Trigger: GGGCTTCCAGTCCTGGTGGTCATAATCTCTGCTTCTGTACAGCCACGGGGCTATGGGATGCATAATCGCTGCTGGTTGAATACAGAGACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CCA 90 bp TCATCTGACTGGCATTCCCAGAGGGTATCAGAAGAGCAGCTAACATaGTGCTTTCCACAGTCTCCAGCAAGATGGTGCCCAGAGTGGATG +
Preference number: 5 (lower is better)
Translates to: SSDWHSQRVSEEQLT*CFPQSPARWCPEWM
Trigger: CATCCACTCTGGGCACCATCTTGCTGGAGACTGTGGAAAGCACCATGTTAGCTGCTCTTCTGATACCCTCTGGGAATGCCAGTCAGATGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CCA 90 bp ATAGCCCCGTGGCTGTACAGAAGCAGAGATTATGACCACCAGGACTaGAAGCCCATAGCCAAAGGCACAGAGGTGCAGCATCTTGATGTT +
Preference number: 5 (lower is better)
Translates to: IAPWLYRSRDYDHQD*KPIAKGTEVQHLDV
Trigger: AACATCAAGATGCTGCACCTCTGTGCCTTTGGCTATGGGCTTCCAGTCCTGGTGGTCATAATCTCTGCTTCTGTACAGCCACGGGGCTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS GCA 90 bp GAATTCCATCGTAAGCTCCCCAGAAGCCATGATGATAGCCAAGTTTaGCATCCGGTTACAGCTGCAGACTGTGTGTGTCTCGGATGCTTC +
Preference number: 5 (lower is better)
Translates to: EFHRKLPRSHDDSQV*HPVTAADCVCLGCF
Trigger: GAAGCATCCGAGACACACACAGTCTGCAGCTGTAACCGGATGGCAAACTTGGCTATCATCATGGCTTCTGGGGAGCTTACGATGGAATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS TCA 90 bp GGATCCCAGAGTGTTGATGCAAATGAAGGTGGGACCACAGAGAGTTaGATTCCTGGAGCACTCATCCACATCTTCACAGGATTCGTCCAG +
Preference number: 5 (lower is better)
Translates to: GSQSVDANEGGTTES*IPGALIHIFTGFVQ
Trigger: CTGGACGAATCCTGTGAAGATGTGGATGAGTGCTCCAGGAATTCAACTCTCTGTGGTCCCACCTTCATTTGCATCAACACTCTGGGATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233376.2
CDS GCA 90 bp GAAAGTCAGGGAGGCAGCCACAGATGTAGGAGCCTGGTACATTGGTaGAGACAGAATTCAGTCCACATTGTAATGGATCTTGGGTGCACT +
Preference number: 5 (lower is better)
Translates to: ESQGGSHRCRSLVHW*RQNSVHIVMDLGCT
Trigger: AGTGCACCCAAGATCCATTACAATGTGGACTGAATTCTGTCTGCACCAATGTACCAGGCTCCTACATCTGTGGCTGCCTCCCTGACTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233840.2
CDS CCA 90 bp GAGGATCCTTTTGCAGTTGAAGTTTCCATATCCTTGGGAGCCTTCTaGATCCATTTGAAAGTCAGGGAGGCAGCCACAGATGTAGGAGCC +
Preference number: 5 (lower is better)
Translates to: EDPFAVEVSISLGAF*IHLKVREAATDVGA
Trigger: GGCTCCTACATCTGTGGCTGCCTCCCTGACTTTCAAATGGATCCAGAAGGCTCCCAAGGATATGGAAACTTCAACTGCAAAAGGATCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233840.2
CDS CCA 90 bp GGTGCAGTAATAACTGTCTGTGGTGTCAGTGCAGGTGGCATAAGCTaGGCAAGTGGTAGTATCTTGACACTCATTCACACCCCAGAAGAG +
Preference number: 5 (lower is better)
Translates to: GAVITVCGVSAGGIS*ASGSILTLIHTPEE
Trigger: CTCTTCTGGGGTGTGAATGAGTGTCAAGATACTACCACTTGCCCAGCTTATGCCACCTGCACTGACACCACAGACAGTTATTACTGCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232808.2
CDS GCA 90 bp GAAAGTTGGTTTGTCCATTGCTGGACAGGAAGCCTCGTTTACAGGTaGAGTAATAACTGTCTGTGGTGTCAGTGCAGGTGGCATAAGCTG +
Preference number: 5 (lower is better)
Translates to: ESWFVHCWTGSLVYR*SNNCLWCQCRWHKL
Trigger: CAGCTTATGCCACCTGCACTGACACCACAGACAGTTATTACTGCACCTGTAAACGAGGCTTCCTGTCCAGCAATGGACAAACCAACTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000232808.2
ENSMUST00000233840.2
CDS CCA 90 bp GGTGCAGTAATAACTGTCTGTGGTGTCAGTGCAGGTGGCATAAGCTaGGCAAGTGGTAGTATCTTGACACTCATTCACACCACCAAGTGT +
Preference number: 5 (lower is better)
Translates to: GAVITVCGVSAGGIS*ASGSILTLIHTTKC
Trigger: ACACTTGGTGGTGTGAATGAGTGTCAAGATACTACCACTTGCCCAGCTTATGCCACCTGCACTGACACCACAGACAGTTATTACTGCACC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233840.2
CDS CCA 90 bp CTTGACATTCCACTCCTGGGCCTTGAAAGTTGGTTTGTCCATTGCTaGACAGGAAGCCTCGTTTACAGGTGCAGTAATAACTGTCTGTGG +
Preference number: 5 (lower is better)
Translates to: LDIPLLGLESWFVHC*TGSLVYRCSNNCLW
Trigger: CCACAGACAGTTATTACTGCACCTGTAAACGAGGCTTCCTGTCCAGCAATGGACAAACCAACTTTCAAGGCCCAGGAGTGGAATGTCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000232808.2
ENSMUST00000233840.2
CDS CCA 90 bp TTTGAAAGTCAGGGAGGCAGCCACAGATGTAGGAGCCTGGTACATTaGTGCAGACAGAATTCAGTCCACATTGTAATGGATCTTGGGTGC +
Preference number: 5 (lower is better)
Translates to: FESQGGSHRCRSLVH*CRQNSVHIVMDLGC
Trigger: GCACCCAAGATCCATTACAATGTGGACTGAATTCTGTCTGCACCAATGTACCAGGCTCCTACATCTGTGGCTGCCTCCCTGACTTTCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233840.2
CDS CCA 90 bp GCTATGGCCAAGGCAAGACATACCAGGGAGATGACTGTACCCACATaGCTGATGATATACAAGGAGAATTCCATCGTAAGCTCCCCAGAA +
Preference number: 5 (lower is better)
Translates to: AMAKARHTREMTVPT*LMIYKENSIVSSPE
Trigger: TTCTGGGGAGCTTACGATGGAATTCTCCTTGTATATCATCAGCCATGTGGGTACAGTCATCTCCCTGGTATGTCTTGCCTTGGCCATAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp TGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTCTCAGACTTCTGCTTaGGCTGGATGTGCTGGAGGG +
Preference number: 5 (lower is better)
Translates to: CVSPWCMKLLEFGSIYPCSQTSA*AGCAGG
Trigger: CCCTCCAGCACATCCAGCCAAAGCAGAAGTCTGAGA...ACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS GCA 90 bp CATCTTGACATTCCACTCCTGGGCCTTGAAAGTTGGTTTGTCCATTaGTGGACAGGAAGCCTCGTTTACAGGTGCAGTAATAACTGTCTG +
Preference number: 5 (lower is better)
Translates to: HLDIPLLGLESWFVH*WTGSLVYRCSNNCL
Trigger: CAGACAGTTATTACTGCACCTGTAAACGAGGCTTCCTGTCCAGCAATGGACAAACCAACTTTCAAGGCCCAGGAGTGGAATGTCAAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000232808.2
ENSMUST00000233840.2
CDS GCA 90 bp CACAAGTGTACAGAAGGAAGCATAACCAAGATCCCTGCCCTGCACTaGTTGGCATTGCTGTATCTGCTCACTTTGGAGTATCAAGTCTTC +
Preference number: 5 (lower is better)
Translates to: HKCTEGSITKIPALH*LALLYLLTLEYQVF
Trigger: GAAGACTTGATACTCCAAAGTGAGCAGATACAGCAATGCCAAGCAGTGCAGGGCAGGGATCTTGGTTATGCTTCCTTCTGTACACTTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CCA 90 bp AGATCCCTGCCCTGCACTGCTTGGCATTGCTGTATCTGCTCACTTTaGAGTATCAAGTCTTCCTTACACTTGAAGAGGATCCTTTTGCAG +
Preference number: 5 (lower is better)
Translates to: RSLPCTAWHCCICSL*SIKSSLHLKRILLQ
Trigger: CTGCAAAAGGATCCTCTTCAAGTGTAAGGAAGACTTGATACTCCAAAGTGAGCAGATACAGCAATGCCAAGCAGTGCAGGGCAGGGATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233840.2
CDS-3UTR CAA 90 bp GTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTTCTCAGACTTCTGCTTaGGCTGGATGTGCTGGAGGG +
Preference number: 5 (lower is better)
Translates to: VSPWCMKLLEFGSIYPCFSQTSA*AGCAGG
Trigger: CCCTCCAGCACATCCAGCCAAAGCAGAAGTCTGAGA...AAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CCA 90 bp GTGCCACCAACAACACGGGAATTCATCCTCAGCTTCCGGAAGGACTaGCCATCTTCAAAGAAGCGTTCATTTAAAACTGATTCCATGTGT +
Preference number: 5 (lower is better)
Translates to: VPPTTREFILSFRKD*PSSKKRSFKTDSMC
Trigger: ACACATGGAATCAGTTTTAAATGAACGCTTCTTTGAAGATGGCCAGTCCTTCCGGAAGCTGAGGATGAATTCCCGTGTTGTTGGTGGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp CTGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGAAATTCAGCTGTCCATaGCTAGATGCAAAGCCAGGG +
Preference number: 5 (lower is better)
Translates to: LCFSLVHETPGVWFHLSMKFSCP*LDAKPG
Trigger: CCCTGGCTTTGCATCTAGCAATGGACAGCTGAATTT...CATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp TCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTGAGCTGCACTGCTTGGCATaGCTGTATCTGCTCACTTTG +
Preference number: 5 (lower is better)
Translates to: SPWCMKLLEFGSIYPCFELHCLA*LYLLTL
Trigger: CAAAGTGAGCAGATACAGCAATGCCAAGCAGTGCAG...CTCAAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp CTGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGGTGAGGAAGAGAATCTaGGCCAAGAAGAGACACACA +
Preference number: 5 (lower is better)
Translates to: LCFSLVHETPGVWFHLSMVRKRI*AKKRHT
Trigger: TGTGTGTCTCTTCTTGGCCAAGATTCTCTTCCTCAC...CATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp CTGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGAGCAACCTCGTGTCCTaGAGTTTAGAGACTTCTGAG +
Preference number: 5 (lower is better)
Translates to: LCFSLVHETPGVWFHLSMSNLVS*SLETSE
Trigger: CTCAGAAGTCTCTAAACTCAAGGACACGAGGTTGCT...CATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CCA 90 bp ATCTTGGAAGTGGATGGCATAGATGACAGTAAAATCCCAGAAGTCTaGGAATGGGAGCTAAGGTCAGTCTTCCTGGTGAGGAGTTTCTTA +
Preference number: 5 (lower is better)
Translates to: ILEVDGIDDSKIPEV*EWELRSVFLVRSFL
Trigger: TAAGAAACTCCTCACCAGGAAGACTGACCTTAGCTCCCATTCCCAGACTTCTGGGATTTTACTGTCATCTATGCCATCCACTTCCAAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CCA 90 bp ACACTCATCGATATCTTCACAAATGGAGCCATTCAAGACAAAGCCTaGTTGACAGGTACAGCTGTAGCTTCCCACAGAGTTAGAGCAGTT +
Preference number: 5 (lower is better)
Translates to: TLIDIFTNGAIQDKA*LTGTAVASHRVRAV
Trigger: AACTGCTCTAACTCTGTGGGAAGCTACAGCTGTACCTGTCAACCAGGCTTTGTCTTGAATGGCTCCATTTGTGAAGATATCGATGAGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233840.2
CDS-3UTR CAA 90 bp TCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTGAGAAATTCAGCTGTCCATaGCTAGATGCAAAGCCAGGG +
Preference number: 5 (lower is better)
Translates to: SPWCMKLLEFGSIYPCFEKFSCP*LDAKPG
Trigger: CCCTGGCTTTGCATCTAGCAATGGACAGCTGAATTT...CTCAAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp CTGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGGACACTGGGGCACTTTaGTTCTCACAGGTATTATCA +
Preference number: 5 (lower is better)
Translates to: LCFSLVHETPGVWFHLSMDTGAL*FSQVLS
Trigger: TGATAATACCTGTGAGAACAAAAGTGCCCCAGTGTC...CATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS GCA 90 bp GGAATACTTAGGGCAGATCCCAATTGTCAGACACTCATCAACATCTaGGCAGAGAAAATTATCCAAACTTCCCAGAATCCAGTCTTTCCC +
Preference number: 5 (lower is better)
Translates to: GILRADPNCQTLINI*AEKIIQTSQNPVFP
Trigger: GGGAAAGACTGGATTCTGGGAAGTTTGGATAATTTTCTCTGCGCAGATGTTGATGAGTGTCTGACAATTGGGATCTGCCCTAAGTATTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233840.2
CDS CCA 90 bp GAAGTGGATGGCATAGATGACAGTAAAATCCCAGAAGTCTGGGAATaGGAGCTAAGGTCAGTCTTCCTGGTGAGGAGTTTCTTATATTCA +
Preference number: 5 (lower is better)
Translates to: EVDGIDDSKIPEVWE*ELRSVFLVRSFLYS
Trigger: TGAATATAAGAAACTCCTCACCAGGAAGACTGACCTTAGCTCCCATTCCCAGACTTCTGGGATTTTACTGTCATCTATGCCATCCACTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp GAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTCTAAGACAGCTGCACTaGGCTCTCCCCAGGATATTG +
Preference number: 5 (lower is better)
Translates to: EHHKKVHRKHKNGNLLYRLRQLH*ALPRIL
Trigger: CAATATCCTGGGGAGAGCCAAGTGCAGCTGTCTTAG...ACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp TGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCCTAAGACAGCTGCACTaGGCTCTCCCCAGGATATTG +
Preference number: 5 (lower is better)
Translates to: WNTTRKCIGNTKMVISCTLRQLH*ALPRIL
Trigger: CAATATCCTGGGGAGAGCCAAGTGCAGCTGTCTTAG...GGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp TCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTGAGCAAGGATCTGAAAAGTaGGCAAAGAGAATCCAGCTG +
Preference number: 5 (lower is better)
Translates to: SPWCMKLLEFGSIYPCFEQGSEK*AKRIQL
Trigger: CAGCTGGATTCTCTTTGCCAACTTTTCAGATCCTTG...CTCAAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp TCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTGAGGTCACCTCTAGGTCTTaGAAATTCAGCTGTCCATTG +
Preference number: 5 (lower is better)
Translates to: SPWCMKLLEFGSIYPCFEVTSRS*KFSCPL
Trigger: CAATGGACAGCTGAATTTCAAAGACCTAGAGGTGAC...CTCAAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp AACACAAAAATGGTAATCTCTTGTACCGTTGAAATAGGACGTGCTCTTTTCAAAAAACCATGTGGTCGCTaGCTCCAGCACGAGGGAGAC +
Preference number: 5 (lower is better)
Translates to: NTKMVISCTVEIGRALFKKPCGR*LQHEGD
Trigger: GTCTCCCTCGTGCTGGAGCAAGCGACCACATGGTTT...TTTGAAAAGAGCACGTCCTATTTCAACGGTACAAGAGATTACCATTTTTGTGTT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp CTGTGTTTCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGATGGACTCATTCTCCTaGCACTCTTCATTGATGACT +
Preference number: 5 (lower is better)
Translates to: LCFSLVHETPGVWFHLSMMDSFS*HSSLMT
Trigger: AGTCATCAATGAAGAGTGCAAGGAGAATGAGTCCAT...CATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGAAACACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp AGGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCACAGAGGTGCAGCATCTaGATGTTGCGAGAGCTGAAA +
Preference number: 5 (lower is better)
Translates to: RHKRQTYLGRYPVFLLGAQRCSI*MLRELK
Trigger: TTTCAGCTCTCGCAACATCAAGATGCTGCACCTCTG...TGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp GGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCATGCCCCCTGCAGACTGTaGATAATGGTGAACAGGTAT +
Preference number: 5 (lower is better)
Translates to: GTKDKLIWVDILCFSLVHAPCRL*IMVNRY
Trigger: ATACCTGTTCACCATTATCAACAGTCTGCAGGGGGC...ATGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp GAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTAAGTTGGTTTGTCCATaGCTGGACAGGAAGCCTCGT +
Preference number: 5 (lower is better)
Translates to: EHHKKVHRKHKNGNLLYRKLVCP*LDRKPR
Trigger: ACGAGGCTTCCTGTCCAGCAATGGACAAACCAACTT...ACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp AGGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCAACATTCGTTAACATCTaGACATTCCACTCCTGGGCC +
Preference number: 5 (lower is better)
Translates to: RHKRQTYLGRYPVFLLGATFVNI*TFHSWA
Trigger: GGCCCAGGAGTGGAATGTCAAGATGTTAACGAATGT...TGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp GAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTGGGACCACAGAGAGTaGAATTCCTGGAGCACTCAT +
Preference number: 5 (lower is better)
Translates to: EHHKKVHRKHKNGNLLYRWDHRE*NSWSTH
Trigger: ATGAGTGCTCCAGGAATTCAACTCTCTGTGGTCCCA...ACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp TGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCTGGGACCACAGAGAGTaGAATTCCTGGAGCACTCAT +
Preference number: 5 (lower is better)
Translates to: WNTTRKCIGNTKMVISCTWDHRE*NSWSTH
Trigger: ATGAGTGCTCCAGGAATTCAACTCTCTGTGGTCCCA...GGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp GGCACAAAAGACAAACTTATTTGGGTAGATATCCTGTGTTTCTCCTTGGTGCATGAAGTTTCCATATCCTaGGGAGCCTTCTGGATCCAT +
Preference number: 5 (lower is better)
Translates to: GTKDKLIWVDILCFSLVHEVSIS*GAFWIH
Trigger: ATGGATCCAGAAGGCTCCCAAGGATATGGAAACTTC...ATGCACCAAGGAGAAACACAGGATATCTACCCAAATAAGTTTGTCTTTTGTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp TCTCCTTGGTGCATGAAACTCCTGGAGTTTGGTTCCATCTATCCATGTTTTGAGAGGATCCTTTTGCAGTaGAAGTTTCCATATCCTTGG +
Preference number: 5 (lower is better)
Translates to: SPWCMKLLEFGSIYPCFERILLQ*KFPYPW
Trigger: CCAAGGATATGGAAACTTCAACTGCAAAAGGATCCT...CTCAAAACATGGATAGATGGAACCAAACTCCAGGAGTTTCATGCACCAAGGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp GAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTGTCTGGTTGTCAGTCTaGTCTATACCGGTGAGGAAG +
Preference number: 5 (lower is better)
Translates to: EHHKKVHRKHKNGNLLYRVWLSV*SIPVRK
Trigger: CTTCCTCACCGGTATAGACAAGACTGACAACCAGAC...ACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp TGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGCCCCCTGCAGACTGTaGATAATGGTGAACAGGTAT +
Preference number: 5 (lower is better)
Translates to: WNTTRKCIGNTKMVISCTAPCRL*IMVNRY
Trigger: ATACCTGTTCACCATTATCAACAGTCTGCAGGGGGC...GGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp GAGAATTTCTGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCAAGTTGGTTTGTCCATaGCTGGACAGGAAGCCTCGT +
Preference number: 5 (lower is better)
Translates to: ENFWNTTRKCIGNTKMVIKLVCP*LDRKPR
Trigger: ACGAGGCTTCCTGTCCAGCAATGGACAAACCAACTT...GATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCAGAAATTCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp GAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTGCCTTGAAAGTTGGTTaGTCCATTGCTGGACAGGAA +
Preference number: 5 (lower is better)
Translates to: EHHKKVHRKHKNGNLLYRALKVG*SIAGQE
Trigger: TTCCTGTCCAGCAATGGACAAACCAACTTTCAAGGC...ACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp GAGAATTTCTGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCCAAGACAAAGCCTGGTaGACAGGTACAGCTGTAGCT +
Preference number: 5 (lower is better)
Translates to: ENFWNTTRKCIGNTKMVIQDKAW*TGTAVA
Trigger: AGCTACAGCTGTACCTGTCAACCAGGCTTTGTCTTG...GATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCAGAAATTCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp ACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTGAACTGCACTGCTTGGCATaGCTGTATCTGCTCACTTTG +
Preference number: 5 (lower is better)
Translates to: TTRKCIGNTKMVISCTVELHCLA*LYLLTL
Trigger: CAAAGTGAGCAGATACAGCAATGCCAAGCAGTGCAG...TTCAACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp ACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTGAAGTCTGGTTGTCAGTCTaGTCTATACCGGTGAGGAAG +
Preference number: 5 (lower is better)
Translates to: TTRKCIGNTKMVISCTVEVWLSV*SIPVRK
Trigger: CTTCCTCACCGGTATAGACAAGACTGACAACCAGAC...TTCAACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp GAGAATTTCTGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCCAGAGGTGCAGCATCTaGATGTTGCGAGAGCTGAAA +
Preference number: 5 (lower is better)
Translates to: ENFWNTTRKCIGNTKMVIQRCSI*MLRELK
Trigger: TTTCAGCTCTCGCAACATCAAGATGCTGCACCTCTG...GATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCAGAAATTCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp AACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTGCCTTGAAAGTTGGTTaGTCCATTGCTGGACAGGAA +
Preference number: 5 (lower is better)
Translates to: NTTRKCIGNTKMVISCTVALKVG*SIAGQE
Trigger: TTCCTGTCCAGCAATGGACAAACCAACTTTCAAGGC...AACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp GAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTCAAGGATCTGAAAAGTaGGCAAAGAGAATCCAGCTG +
Preference number: 5 (lower is better)
Translates to: EHHKKVHRKHKNGNLLYRQGSEK*AKRIQL
Trigger: CAGCTGGATTCTCTTTGCCAACTTTTCAGATCCTTG...ACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp AACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTGAAGTTTCCATATCCTaGGGAGCCTTCTGGATCCAT +
Preference number: 5 (lower is better)
Translates to: NTTRKCIGNTKMVISCTVEVSIS*GAFWIH
Trigger: ATGGATCCAGAAGGCTCCCAAGGATATGGAAACTTC...AACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp TGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGACACTGGGGCACTTTaGTTCTCACAGGTATTATCA +
Preference number: 5 (lower is better)
Translates to: WNTTRKCIGNTKMVISCTDTGAL*FSQVLS
Trigger: TGATAATACCTGTGAGAACAAAAGTGCCCCAGTGTC...GGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp GAGAATTTCTGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCGTGAGGAAGAGAATCTaGGCCAAGAAGAGACACACA +
Preference number: 5 (lower is better)
Translates to: ENFWNTTRKCIGNTKMVIVRKRI*AKKRHT
Trigger: TGTGTGTCTCTTCTTGGCCAAGATTCTCTTCCTCAC...GATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCAGAAATTCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp AACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTAGCAACCTCGTGTCCTaGAGTTTAGAGACTTCTGAG +
Preference number: 5 (lower is better)
Translates to: NTTRKCIGNTKMVISCTVSNLVS*SLETSE
Trigger: CTCAGAAGTCTCTAAACTCAAGGACACGAGGTTGCT...AACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp AACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTACAGAGTTAGAGCAGTaGGAATACTTAGGGCAGATC +
Preference number: 5 (lower is better)
Translates to: NTTRKCIGNTKMVISCTVTELEQ*EYLGQI
Trigger: GATCTGCCCTAAGTATTCCAACTGCTCTAACTCTGT...AACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp AACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTGTCACCTCTAGGTCTTaGAAATTCAGCTGTCCATTG +
Preference number: 5 (lower is better)
Translates to: NTTRKCIGNTKMVISCTVVTSRS*KFSCPL
Trigger: CAATGGACAGCTGAATTTCAAAGACCTAGAGGTGAC...AACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp TGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCTCCTTGCACTCTTCATaGATGACTTTGCTTTCGATG +
Preference number: 5 (lower is better)
Translates to: WNTTRKCIGNTKMVISCTSLHSS*MTLLSM
Trigger: CATCGAAAGCAAAGTCATCAATGAAGAGTGCAAGGA...GGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp ACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTGAACTGTATCTGCTCACTTaGGAGTATCAAGTCTTCCTT +
Preference number: 5 (lower is better)
Translates to: TTRKCIGNTKMVISCTVELYLLT*EYQVFL
Trigger: AAGGAAGACTTGATACTCCAAAGTGAGCAGATACAG...TTCAACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp GAGAATTTCTGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCCTTGCACTCTTCATaGATGACTTTGCTTTCGATG +
Preference number: 5 (lower is better)
Translates to: ENFWNTTRKCIGNTKMVISLHSS*MTLLSM
Trigger: CATCGAAAGCAAAGTCATCAATGAAGAGTGCAAGGA...GATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCAGAAATTCTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp TGGAACACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCTTGAAGAGGATCCTTTaGCAGTTGAAGTTTCCATAT +
Preference number: 5 (lower is better)
Translates to: WNTTRKCIGNTKMVISCTLKRIL*QLKFPY
Trigger: ATATGGAAACTTCAACTGCAAAAGGATCCTCTTCAA...GGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGTGTTCCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp AACACAAAAATGGTAATCTCTTGTACCGTTGAAATAGGACGTGCTCTTTTCAAACTGTATCTGCTCACTTaGGAGTATCAAGTCTTCCTT +
Preference number: 5 (lower is better)
Translates to: NTKMVISCTVEIGRALFKLYLLT*EYQVFL
Trigger: AAGGAAGACTTGATACTCCAAAGTGAGCAGATACAG...TTTGAAAAGAGCACGTCCTATTTCAACGGTACAAGAGATTACCATTTTTGTGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp AACACAAAAATGGTAATCTCTTGTACCGTTGAAATAGGACGTGCTCTTTTCAAAATGGACTCATTCTCCTaGCACTCTTCATTGATGACT +
Preference number: 5 (lower is better)
Translates to: NTKMVISCTVEIGRALFKMDSFS*HSSLMT
Trigger: AGTCATCAATGAAGAGTGCAAGGAGAATGAGTCCAT...TTTGAAAAGAGCACGTCCTATTTCAACGGTACAAGAGATTACCATTTTTGTGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS-3UTR CAA 90 bp ACCACAAGAAAGTGCATAGGAAACACAAAAATGGTAATCTCTTGTACCGTTGAATTGAAGAGGATCCTTTaGCAGTTGAAGTTTCCATAT +
Preference number: 5 (lower is better)
Translates to: TTRKCIGNTKMVISCTVELKRIL*QLKFPY
Trigger: ATATGGAAACTTCAACTGCAAAAGGATCCTCTTCAA...TTCAACGGTACAAGAGATTACCATTTTTGTGTTTCCTATGCACTTTCTTGTGGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS TCA 72 bp TCCCATAGCCCCGTGGCTGTACAGAAGCAGAGATTATaGCCACCAGGACTGGAAGCCCATAGCCAAAGGCAC +
Preference number: 6 (lower is better)
Translates to: SHSPVAVQKQRL*PPGLEAHSQRH
Trigger: GTGCCTTTGGCTATGGGCTTCCAGTCCTGGTGGTCATAATCTCTGCTTCTGTACAGCCACGGGGCTATGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS GCA 72 bp CATCCGGTTACAGCTGCAGACTGTGTGTGTCTCGGATaGTTCCACAATCTCACAGCCCGAGGGTGTCCATCT +
Preference number: 6 (lower is better)
Translates to: HPVTAADCVCLG*FHNLTARGCPS
Trigger: AGATGGACACCCTCGGGCTGTGAGATTGTGGAAGCATCCGAGACACACACAGTCTGCAGCTGTAACCGGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS TCA 72 bp GGTCAGCAACCTCGTGTCCTTGAGTTTAGAGACTTCTaGGCTGACACTGCAGAGCTTCTGCCTCAGAACCCA +
Preference number: 6 (lower is better)
Translates to: GQQPRVLEFRDF*ADTAELLPQNP
Trigger: TGGGTTCTGAGGCAGAAGCTCTGCAGTGTCAGCTCAGAAGTCTCTAAACTCAAGGACACGAGGTTGCTGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS GCA 72 bp CATTCCCAGAGGGTATCAGAAGAGCAGCTAACATGGTaGTTTCCACAGTCTCCAGCAAGATGGTGCCCAGAG +
Preference number: 6 (lower is better)
Translates to: HSQRVSEEQLTW*FPQSPARWCPE
Trigger: CTCTGGGCACCATCTTGCTGGAGACTGTGGAAAGCACCATGTTAGCTGCTCTTCTGATACCCTCTGGGAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CCA 72 bp CACTCATCCACATCTTCACAGGATTCGTCCAGGCCCTaGAACATTGGCCCTCCTCCACTAGATTCAAGTCCT +
Preference number: 6 (lower is better)
Translates to: HSSTSSQDSSRP*NIGPPPLDSSP
Trigger: AGGACTTGAATCTAGTGGAGGAGGGCCAATGTTCCAGGGCCTGGACGAATCCTGTGAAGATGTGGATGAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233376.2
CDS CCA 72 bp TGGCATTCCCAGAGGGTATCAGAAGAGCAGCTAACATaGTGCTTTCCACAGTCTCCAGCAAGATGGTGCCCA +
Preference number: 6 (lower is better)
Translates to: WHSQRVSEEQLT*CFPQSPARWCP
Trigger: TGGGCACCATCTTGCTGGAGACTGTGGAAAGCACCATGTTAGCTGCTCTTCTGATACCCTCTGGGAATGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CAA 72 bp CCCGCAATGATGGCACAAGCCGTCTGGTTGTCAGTCTaGTCTATACCGGTGAGGAAGAGAATCTTGGCCAAG +
Preference number: 6 (lower is better)
Translates to: PAMMAQAVWLSV*SIPVRKRILAK
Trigger: CTTGGCCAAGATTCTCTTCCTCACCGGTATAGACAAGACTGACAACCAGACGGCTTGTGCCATCATTGCGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CAA 72 bp AGTGCAGGTGGCATAAGCTGGGCAAGTGGTAGTATCTaGACACTCATTCACACCCCAGAAGAGGAGCAGCCA +
Preference number: 6 (lower is better)
Translates to: SAGGISWASGSI*TLIHTPEEEQP
Trigger: TGGCTGCTCCTCTTCTGGGGTGTGAATGAGTGTCAAGATACTACCACTTGCCCAGCTTATGCCACCTGCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232808.2
CDS CAA 90 bp TGTGGTGTCAGTGCAGGTGGCATAAGCTGGGCAAGTGGTAGTATCTaGACACTCATTCACACCACCAAGTGTTTGTCCCAGGGTGGGAAG +
Preference number: 6 (lower is better)
Translates to: CGVSAGGISWASGSI*TLIHTTKCLSQGGK
Trigger: CTTCCCACCCTGGGACAAACACTTGGTGGTGTGAATGAGTGTCAAGATACTACCACTTGCCCAGCTTATGCCACCTGCACTGACACCACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233840.2
CDS CCA 72 bp ATTCAACCAGCAGCGATTATGCATCCCATAGCCCCGTaGCTGTACAGAAGCAGAGATTATGACCACCAGGAC +
Preference number: 6 (lower is better)
Translates to: IQPAAIMHPIAP*LYRSRDYDHQD
Trigger: GTCCTGGTGGTCATAATCTCTGCTTCTGTACAGCCACGGGGCTATGGGATGCATAATCGCTGCTGGTTGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CAA 72 bp AATTCCCATCTGCCGGATGGCCAAGGATCTGAAAAGTaGGCAAAGAGAATCCAGCTGGGCATGAGCAGCTGT +
Preference number: 6 (lower is better)
Translates to: NSHLPDGQGSEK*AKRIQLGMSSC
Trigger: ACAGCTGCTCATGCCCAGCTGGATTCTCTTTGCCAACTTTTCAGATCCTTGGCCATCCGGCAGATGGGAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CAA 90 bp TGTAGGAATCCCGCAATGATGGCACAAGCCGTCTGGTTGTCAGTCTaGTCTATACCGGTGAGGAAGAGAATCTTGGCCAAGAAGAGACAC +
Preference number: 6 (lower is better)
Translates to: CRNPAMMAQAVWLSV*SIPVRKRILAKKRH
Trigger: GTGTCTCTTCTTGGCCAAGATTCTCTTCCTCACCGGTATAGACAAGACTGACAACCAGACGGCTTGTGCCATCATTGCGGGATTCCTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CAA 90 bp ATGAAAATCTGGGCAATGGCCTTGAAGGTCAGCAACCTCGTGTCCTaGAGTTTAGAGACTTCTGAGCTGACACTGCAGAGCTTCTGCCTC +
Preference number: 6 (lower is better)
Translates to: MKIWAMALKVSNLVS*SLETSELTLQSFCL
Trigger: GAGGCAGAAGCTCTGCAGTGTCAGCTCAGAAGTCTCTAAACTCAAGGACACGAGGTTGCTGACCTTCAAGGCCATTGCCCAGATTTTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS TCA 72 bp TCTGTACAATTCCCATCTGCCGGATGGCCAAGGATCTaGAAAGTTGGCAAAGAGAATCCAGCTGGGCATGAG +
Preference number: 6 (lower is better)
Translates to: SVQFPSAGWPRI*KVGKENPAGHE
Trigger: CTCATGCCCAGCTGGATTCTCTTTGCCAACTTTTCAGATCCTTGGCCATCCGGCAGATGGGAATTGTACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS TCA 72 bp CACAAGCCGTCTGGTTGTCAGTCTTGTCTATACCGGTaGGGAAGAGAATCTTGGCCAAGAAGAGACACACAC +
Preference number: 6 (lower is better)
Translates to: HKPSGCQSCLYR*GRESWPRRDTH
Trigger: GTGTGTGTCTCTTCTTGGCCAAGATTCTCTTCCTCACCGGTATAGACAAGACTGACAACCAGACGGCTTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS GCA 72 bp TCACAAGTGTACAGAAGGAAGCATAACCAAGATCCCTaGCCTGCACTGCTTGGCATTGCTGTATCTGCTCAC +
Preference number: 6 (lower is better)
Translates to: SQVYRRKHNQDP*PALLGIAVSAH
Trigger: GTGAGCAGATACAGCAATGCCAAGCAGTGCAGGGCAGGGATCTTGGTTATGCTTCCTTCTGTACACTTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS GCA 72 bp ACTGTTGATAATGGTGAACAGGTATGCCATGATGCTTaGCAAGGGGCCAATCTGGAAAATGCCCAGCACCCA +
Preference number: 6 (lower is better)
Translates to: TVDNGEQVCHDA*QGANLENAQHP
Trigger: TGGGTGCTGGGCATTTTCCAGATTGGCCCCTTGGCAAGCATCATGGCATACCTGTTCACCATTATCAACAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CCA 72 bp CCACTCCTGGGCCTTGAAAGTTGGTTTGTCCATTGCTaGACAGGAAGCCTCGTTTACAGGTGCAGTAATAAC +
Preference number: 6 (lower is better)
Translates to: PLLGLESWFVHC*TGSLVYRCSNN
Trigger: GTTATTACTGCACCTGTAAACGAGGCTTCCTGTCCAGCAATGGACAAACCAACTTTCAAGGCCCAGGAGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000232808.2
ENSMUST00000233840.2
CDS CCA 72 bp CAGGGAGGCAGCCACAGATGTAGGAGCCTGGTACATTaGTGCAGACAGAATTCAGTCCACATTGTAATGGAT +
Preference number: 6 (lower is better)
Translates to: QGGSHRCRSLVH*CRQNSVHIVMD
Trigger: ATCCATTACAATGTGGACTGAATTCTGTCTGCACCAATGTACCAGGCTCCTACATCTGTGGCTGCCTCCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233840.2
CDS CCA 72 bp GTGGATGGCATAGATGACAGTAAAATCCCAGAAGTCTaGGAATGGGAGCTAAGGTCAGTCTTCCTGGTGAGG +
Preference number: 6 (lower is better)
Translates to: VDGIDDSKIPEV*EWELRSVFLVR
Trigger: CCTCACCAGGAAGACTGACCTTAGCTCCCATTCCCAGACTTCTGGGATTTTACTGTCATCTATGCCATCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CAA 72 bp AGTGCAGGTGGCATAAGCTGGGCAAGTGGTAGTATCTaGACACTCATTCACACCACCAAGTGTTTGTCCCAG +
Preference number: 6 (lower is better)
Translates to: SAGGISWASGSI*TLIHTTKCLSQ
Trigger: CTGGGACAAACACTTGGTGGTGTGAATGAGTGTCAAGATACTACCACTTGCCCAGCTTATGCCACCTGCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233840.2
CDS CAA 72 bp TGTAGGAATCCCGCAATGATGGCACAAGCCGTCTGGTaGTCAGTCTTGTCTATACCGGTGAGGAAGAGAATC +
Preference number: 6 (lower is better)
Translates to: CRNPAMMAQAVW*SVLSIPVRKRI
Trigger: GATTCTCTTCCTCACCGGTATAGACAAGACTGACAACCAGACGGCTTGTGCCATCATTGCGGGATTCCTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS GCA 72 bp ATTCCACTCCTGGGCCTTGAAAGTTGGTTTGTCCATTaGTGGACAGGAAGCCTCGTTTACAGGTGCAGTAAT +
Preference number: 6 (lower is better)
Translates to: IPLLGLESWFVH*WTGSLVYRCSN
Trigger: ATTACTGCACCTGTAAACGAGGCTTCCTGTCCAGCAATGGACAAACCAACTTTCAAGGCCCAGGAGTGGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000232808.2
ENSMUST00000233840.2
CDS GCA 72 bp GGAGGCAGCCACAGATGTAGGAGCCTGGTACATTGGTaGAGACAGAATTCAGTCCACATTGTAATGGATCTT +
Preference number: 6 (lower is better)
Translates to: GGSHRCRSLVHW*RQNSVHIVMDL
Trigger: AAGATCCATTACAATGTGGACTGAATTCTGTCTGCACCAATGTACCAGGCTCCTACATCTGTGGCTGCCTCC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233840.2
CDS GCA 72 bp AGATCCCTGCCCTGCACTGCTTGGCATTGCTGTATCTaGTCACTTTGGAGTATCAAGTCTTCCTTACACTTG +
Preference number: 6 (lower is better)
Translates to: RSLPCTAWHCCI*SLWSIKSSLHL
Trigger: CAAGTGTAAGGAAGACTTGATACTCCAAAGTGAGCAGATACAGCAATGCCAAGCAGTGCAGGGCAGGGATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233840.2
CDS CCA 72 bp ATAACTGTCTGTGGTGTCAGTGCAGGTGGCATAAGCTaGGCAAGTGGTAGTATCTTGACACTCATTCACACC +
Preference number: 6 (lower is better)
Translates to: ITVCGVSAGGIS*ASGSILTLIHT
Trigger: GGTGTGAATGAGTGTCAAGATACTACCACTTGCCCAGCTTATGCCACCTGCACTGACACCACAGACAGTTAT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000232808.2
ENSMUST00000233840.2
CDS CAA 72 bp CATGTCACCTCTAGGTCTTTGAAATTCAGCTGTCCATaGCTAGATGCAAAGCCAGGGTGGCAAGTGCAGAAG +
Preference number: 6 (lower is better)
Translates to: HVTSRSLKFSCP*LDAKPGWQVQK
Trigger: CTTCTGCACTTGCCACCCTGGCTTTGCATCTAGCAATGGACAGCTGAATTTCAAAGACCTAGAGGTGACATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233840.2
CDS CAA 90 bp CTTACACTTGAAGAGGATCCTTTTGCAGTTGAAGTTTCCATATCCTaGGGAGCCTTCTGGATCCATTTGAAAGTCAGGGAGGCAGCCACA +
Preference number: 6 (lower is better)
Translates to: LTLEEDPFAVEVSIS*GAFWIHLKVREAAT
Trigger: TGTGGCTGCCTCCCTGACTTTCAAATGGATCCAGAAGGCTCCCAAGGATATGGAAACTTCAACTGCAAAAGGATCCTCTTCAAGTGTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233840.2
CDS CAA 90 bp AAGATCCCTGCCCTGCACTGCTTGGCATTGCTGTATCTGCTCACTTaGGAGTATCAAGTCTTCCTTACACTTGAAGAGGATCCTTTTGCA +
Preference number: 6 (lower is better)
Translates to: KIPALHCLALLYLLT*EYQVFLTLEEDPFA
Trigger: TGCAAAAGGATCCTCTTCAAGTGTAAGGAAGACTTGATACTCCAAAGTGAGCAGATACAGCAATGCCAAGCAGTGCAGGGCAGGGATCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233840.2
CDS CAA 90 bp ACAGAAGGAAGCATAACCAAGATCCCTGCCCTGCACTGCTTGGCATaGCTGTATCTGCTCACTTTGGAGTATCAAGTCTTCCTTACACTT +
Preference number: 6 (lower is better)
Translates to: TEGSITKIPALHCLA*LYLLTLEYQVFLTL
Trigger: AAGTGTAAGGAAGACTTGATACTCCAAAGTGAGCAGATACAGCAATGCCAAGCAGTGCAGGGCAGGGATCTTGGTTATGCTTCCTTCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS TCA 72 bp AGTGTTGATGCAAATGAAGGTGGGACCACAGAGAGTTaGATTCCTGGAGCACTCATCCACATCTTCACAGGA +
Preference number: 6 (lower is better)
Translates to: SVDANEGGTTES*IPGALIHIFTG
Trigger: TCCTGTGAAGATGTGGATGAGTGCTCCAGGAATTCAACTCTCTGTGGTCCCACCTTCATTTGCATCAACACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233376.2
CDS CCA 72 bp CCCTGCACTGCTTGGCATTGCTGTATCTGCTCACTTTaGAGTATCAAGTCTTCCTTACACTTGAAGAGGATC +
Preference number: 6 (lower is better)
Translates to: PCTAWHCCICSL*SIKSSLHLKRI
Trigger: GATCCTCTTCAAGTGTAAGGAAGACTTGATACTCCAAAGTGAGCAGATACAGCAATGCCAAGCAGTGCAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233840.2
CDS CCA 72 bp TTTCGATGTCTAGGTACTCCGTCTGAATCATCTGACTaGCATTCCCAGAGGGTATCAGAAGAGCAGCTAACA +
Preference number: 6 (lower is better)
Translates to: FRCLGTPSESSD*HSQRVSEEQLT
Trigger: TGTTAGCTGCTCTTCTGATACCCTCTGGGAATGCCAGTCAGATGATTCAGACGGAGTACCTAGACATCGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CAA 72 bp ACATTCGTTAACATCTTGACATTCCACTCCTGGGCCTaGAAAGTTGGTTTGTCCATTGCTGGACAGGAAGCC +
Preference number: 6 (lower is better)
Translates to: TFVNILTFHSWA*KVGLSIAGQEA
Trigger: GGCTTCCTGTCCAGCAATGGACAAACCAACTTTCAAGGCCCAGGAGTGGAATGTCAAGATGTTAACGAATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000232808.2
ENSMUST00000233840.2
CDS CAA 72 bp GCCCTGCACTGCTTGGCATTGCTGTATCTGCTCACTTaGGAGTATCAAGTCTTCCTTACACTTGAAGAGGAT +
Preference number: 6 (lower is better)
Translates to: ALHCLALLYLLT*EYQVFLTLEED
Trigger: ATCCTCTTCAAGTGTAAGGAAGACTTGATACTCCAAAGTGAGCAGATACAGCAATGCCAAGCAGTGCAGGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233840.2
CDS CAA 90 bp TTCGTTAACATCTTGACATTCCACTCCTGGGCCTTGAAAGTTGGTTaGTCCATTGCTGGACAGGAAGCCTCGTTTACAGGTGCAGTAATA +
Preference number: 6 (lower is better)
Translates to: FVNILTFHSWALKVG*SIAGQEASFTGAVI
Trigger: TATTACTGCACCTGTAAACGAGGCTTCCTGTCCAGCAATGGACAAACCAACTTTCAAGGCCCAGGAGTGGAATGTCAAGATGTTAACGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000232808.2
ENSMUST00000233840.2
CDS CAA 90 bp TTCATCTTGTCCCCTCTGGCTGCCAAGTTAATGGACTCATTCTCCTaGCACTCTTCATTGATGACTTTGCTTTCGATGTCTAGGTACTCC +
Preference number: 6 (lower is better)
Translates to: FILSPLAAKLMDSFS*HSSLMTLLSMSRYS
Trigger: GGAGTACCTAGACATCGAAAGCAAAGTCATCAATGAAGAGTGCAAGGAGAATGAGTCCATTAACTTGGCAGCCAGAGGGGACAAGATGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CCA 72 bp CGTCTCGAGTCACACATTCATCTTCATCTTCACAAATaGAGCCATTCAAGACAAAGCCTGGTTGACAGGTAC +
Preference number: 6 (lower is better)
Translates to: RLESHIHLHLHK*SHSRQSLVDRY
Trigger: GTACCTGTCAACCAGGCTTTGTCTTGAATGGCTCCATTTGTGAAGATGAAGATGAATGTGTGACTCGAGACG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CCA 72 bp AAGGCAAGACATACCAGGGAGATGACTGTACCCACATaGCTGATGATATACAAGGAGAATTCCATCGTAAGC +
Preference number: 6 (lower is better)
Translates to: KARHTREMTVPT*LMIYKENSIVS
Trigger: GCTTACGATGGAATTCTCCTTGTATATCATCAGCCATGTGGGTACAGTCATCTCCCTGGTATGTCTTGCCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CAA 72 bp TCCCCTCTGGCTGCCAAGTTAATGGACTCATTCTCCTaGCACTCTTCATTGATGACTTTGCTTTCGATGTCT +
Preference number: 6 (lower is better)
Translates to: SPLAAKLMDSFS*HSSLMTLLSMS
Trigger: AGACATCGAAAGCAAAGTCATCAATGAAGAGTGCAAGGAGAATGAGTCCATTAACTTGGCAGCCAGAGGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CAA 90 bp ACTTTGAAGACATTCGTTAACATCTTGACATTCCACTCCTGGGCCTaGAAAGTTGGTTTGTCCATTGCTGGACAGGAAGCCTCGTTTACA +
Preference number: 6 (lower is better)
Translates to: TLKTFVNILTFHSWA*KVGLSIAGQEASFT
Trigger: TGTAAACGAGGCTTCCTGTCCAGCAATGGACAAACCAACTTTCAAGGCCCAGGAGTGGAATGTCAAGATGTTAACGAATGTCTTCAAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000232808.2
ENSMUST00000233840.2
CDS CAA 72 bp CTTGTAGCTGCACTCTGTAAGGACACTGGGGCACTTTaGTTCTCACAGGTATTATCAAGGATTGTGAAGGTA +
Preference number: 6 (lower is better)
Translates to: LVAALCKDTGAL*FSQVLSRIVKV
Trigger: TACCTTCACAATCCTTGATAATACCTGTGAGAACAAAAGTGCCCCAGTGTCCTTACAGAGTGCAGCTACAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS CAA 72 bp GCCAAGTTAATGGACTCATTCTCCTTGCACTCTTCATaGATGACTTTGCTTTCGATGTCTAGGTACTCCGTC +
Preference number: 6 (lower is better)
Translates to: AKLMDSFSLHSS*MTLLSMSRYSV
Trigger: GACGGAGTACCTAGACATCGAAAGCAAAGTCATCAATGAAGAGTGCAAGGAGAATGAGTCCATTAACTTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
CDS GCA 72 bp AGACAGAATTCAGTCCACATTGTAATGGATCTTGGGTaGACTCATCAATATCTTCACATGTCACCTCTAGGT +
Preference number: 6 (lower is better)
Translates to: RQNSVHIVMDLG*THQYLHMSPLG
Trigger: ACCTAGAGGTGACATGTGAAGATATTGATGAGTGCACCCAAGATCCATTACAATGTGGACTGAATTCTGTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233840.2
CDS CAA 72 bp CACTCATCAATATCTTCACATGTCACCTCTAGGTCTTaGAAATTCAGCTGTCCATTGCTAGATGCAAAGCCA +
Preference number: 6 (lower is better)
Translates to: HSSISSHVTSRS*KFSCPLLDAKP
Trigger: TGGCTTTGCATCTAGCAATGGACAGCTGAATTTCAAAGACCTAGAGGTGACATGTGAAGATATTGATGAGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004850.8
ENSMUST00000086763.13
ENSMUST00000233840.2