RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ADCY9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000005580

Ensembl transcript IDs: ENSMUST00000005719.4, ENSMUST00000117801.8, ENSMUST00000120080.8

Found 542 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGGCTGAAATGACCACGTaGCACCACATCTGGGGACAG +
Preference number: 2 (lower is better)
Translates to: GQTLKALESLHAADWIPWAEMTT*HHIWGQ
Trigger: CTGTCCCCAGATGTGGTGTCACGTGGTCATTTCAGC...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
3UTR-3UTR TCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCGCTGAAATGACCACGTaGCACCACATCTGGGGACAG +
Preference number: 2 (lower is better)
Translates to: HQWPQPQTQGQTLKALESAEMTT*HHIWGQ
Trigger: CTGTCCCCAGATGTGGTGTCACGTGGTCATTTCAGC...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
3UTR-3UTR TCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCACGAAATGGGTGGAAATaGACCCTGAATAACTGTGCT +
Preference number: 2 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPRNGWK*TLNNCA
Trigger: AGCACAGTTATTCAGGGTTCATTTCCACCCATTTCG...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
3UTR-3UTR TCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCGGTGGAAATGAACCCTaGATAACTGTGCTCCACACA +
Preference number: 2 (lower is better)
Translates to: HQWPQPQTQGQTLKALESGGNEP*ITVLHT
Trigger: TGTGTGGAGCACAGTTATTCAGGGTTCATTTCCACC...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
3UTR-3UTR TCA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGTGGAAATGAACCCTaGATAACTGTGCTCCACACA +
Preference number: 2 (lower is better)
Translates to: RAMIPPVASAPDARPDPEGGNEP*ITVLHT
Trigger: TGTGTGGAGCACAGTTATTCAGGGTTCATTTCCACC...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
3UTR-3UTR CCA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAAGATGTTACTGTGTTTaGACACGCAGAGCACCTTGG +
Preference number: 2 (lower is better)
Translates to: RAMIPPVASAPDARPDPERCYCV*TRRAPW
Trigger: CCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCT...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
3UTR-3UTR CCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGAGATGTTACTGTGTTTaGACACGCAGAGCACCTTGG +
Preference number: 2 (lower is better)
Translates to: GQTLKALESLHAADWIPWRCYCV*TRRAPW
Trigger: CCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCT...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
3UTR-3UTR CCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTAAAGGAAAACCGAAATaGGTGGAAATGAACCCTGAA +
Preference number: 2 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLKGKPK*VEMNPE
Trigger: TTCAGGGTTCATTTCCACCCATTTCGGTTTTCCTTT...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
3UTR-3UTR CAA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTGACACGCAGAGCACCTaGGCAGCTCTCGGCGCTGCC +
Preference number: 3 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLDTQST*AALGAA
Trigger: GGCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTC...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
3UTR CCA 72 bp ACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTaGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCAGG +
Preference number: 3 (lower is better)
Translates to: TLKALESLHAAD*IPWLGWGQASR
Trigger: CCTGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
3UTR TCA 72 bp ACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTaGAGGCACTTGAATCCCTCCACGCTGCTGACTGGA +
Preference number: 3 (lower is better)
Translates to: TSGLSPRRKARP*RHLNPSTLLTG
Trigger: TCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
3UTR-3UTR CAA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCGACACGCAGAGCACCTaGGCAGCTCTCGGCGCTGCC +
Preference number: 3 (lower is better)
Translates to: HVTPHLGTETEVLDSTTADTQST*AALGAA
Trigger: GGCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTC...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
3UTR-3UTR CAA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTCAGATGTTACTGTGTTaGGACACGCAGAGCACCTTG +
Preference number: 3 (lower is better)
Translates to: PRAMIPPVASAPDARPDPQMLLC*DTQSTL
Trigger: CAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTG...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
3UTR-3UTR CAA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCAGATGTTACTGTGTTaGGACACGCAGAGCACCTTG +
Preference number: 3 (lower is better)
Translates to: GQTLKALESLHAADWIPWQMLLC*DTQSTL
Trigger: CAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTG...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
3UTR CCA 72 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTaGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTG +
Preference number: 3 (lower is better)
Translates to: STTAYRHRCYCV*TRRAPWQLSAL
Trigger: CAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
3UTR-3UTR CAA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCCAGATGTTACTGTGTTaGGACACGCAGAGCACCTTG +
Preference number: 3 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAQMLLC*DTQSTL
Trigger: CAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTG...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTCTCAGCAGCTCCCAGTaGAGGGCCCCAGGGCCCGGA +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPLSSSQ*RAPGPG
Trigger: TCCGGGCCCTGGGGCCCTGCACTGGGAGCTGCTGAG...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTGCAGTAGGCATGGTCTaGCCGGGGCTCCGGACACCC +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLAVGMV*PGLRTP
Trigger: GGGTGTCCGGAGCCCCGGGCAGACCATGCCTACTGC...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTTACCGGAAGCGGCGCTaGGTCTGCGGAAAGCAGCGC +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPYRKRR*VCGKQR
Trigger: GCGCTGCTTTCCGCAGACCCAGCGCCGCTTCCGGTA...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR TCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCCCGGGGAAGGCCCCCTaGGTCTCCCGAGCTGCTACA +
Preference number: 4 (lower is better)
Translates to: HQWPQPQTQGQTLKALESPGKAP*VSRAAT
Trigger: TGTAGCAGCTCGGGAGACTCAGGGGGCCTTCCCCGG...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR TCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCAGGCCGTGTTCAGCCCTaGGGCTGCCATGTATGTGGC +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPGRVQP*GCHVCG
Trigger: GCCACATACATGGCAGCCTCAGGGCTGAACACGGCC...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGCAGTAGGCATGGTCTaGCCGGGGCTCCGGACACCC +
Preference number: 4 (lower is better)
Translates to: RAMIPPVASAPDARPDPEAVGMV*PGLRTP
Trigger: GGGTGTCCGGAGCCCCGGGCAGACCATGCCTACTGC...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCGCAGTAGGCATGGTCTaGCCGGGGCTCCGGACACCC +
Preference number: 4 (lower is better)
Translates to: HQWPQPQTQGQTLKALESAVGMV*PGLRTP
Trigger: GGGTGTCCGGAGCCCCGGGCAGACCATGCCTACTGC...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCAGAGACCGCCCAATGCTaGCGTCCACCTGGACTCGGA +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPETAQC*RPPGLG
Trigger: TCCGAGTCCAGGTGGACGGCAGCATTGGGCGGTCTC...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTGGGAGGAGGGCTGACTaGTCCAAGCTCACCCCTGCC +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLGRRAD*SKLTPA
Trigger: GGCAGGGGTGAGCTTGGACCAGTCAGCCCTCCTCCC...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGTTGCTGTCTCCGCTTaGGTCGCAGCTCACCTCGGT +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPVAVSA*VAAHLG
Trigger: ACCGAGGTGAGCTGCGACTCAAGCGGAGACAGCAAC...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR GCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCATCCTCATGCCCAGGATaGCACACAGGACAGTCCCCG +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPSSCPG*HTGQSP
Trigger: CGGGGACTGTCCTGTGTGGCATCCTGGGCATGAGGA...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTTCCTCATGCCCAGGATaGCACACAGGACAGTCCCCG +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPSSCPG*HTGQSP
Trigger: CGGGGACTGTCCTGTGTGGCATCCTGGGCATGAGGA...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGGCCCAGCCCCCACGATaGTGGCAAGGGAGGACCTCA +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWAQPPR*WQGRTS
Trigger: TGAGGTCCTCCCTTGCCACCATCGTGGGGGCTGGGC...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGGCACTCCACACCAGTaGTGTCCATCCTGCTGGCGA +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPGTPHQ*CPSCWR
Trigger: TCGCCAGCAGGATGGACACCACTGGTGTGGAGTGCC...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTGCCGTCCTGCAGCACTaGGCTGTTGCATGGGTTCCT +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLAVLQH*AVAWVP
Trigger: AGGAACCCATGCAACAGCTCAGTGCTGCAGGACGGC...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCCGTGTTCAGCCCTaGGGCTGCCATGTATGTGGC +
Preference number: 4 (lower is better)
Translates to: RAMIPPVASAPDARPDPEGRVQP*GCHVCG
Trigger: GCCACATACATGGCAGCCTCAGGGCTGAACACGGCC...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTCGCAGCTCACCTCGGTaGTATGGTGATGCAGCAGCT +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPRSSPR*YGDAAA
Trigger: AGCTGCTGCATCACCATAGCACCGAGGTGAGCTGCG...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR GCA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCCTCAGCAGCTCCCAGTaGAGGGCCCCAGGGCCCGGA +
Preference number: 4 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCLSSSQ*RAPGPG
Trigger: TCCGGGCCCTGGGGCCCTGCACTGGGAGCTGCTGAG...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTAGAAAGCAGGGCCTCTaGACAGCTGCAGTGGGACTC +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPRKQGL*TAAVGL
Trigger: GAGTCCCACTGCAGCTGTGCAGAGGCCCTGCTTTCT...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCAAGAAAGCAGGGCCTCTaGACAGCTGCAGTGGGACTC +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPRKQGL*TAAVGL
Trigger: GAGTCCCACTGCAGCTGTGCAGAGGCCCTGCTTTCT...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTGTCCAAGCTCACCCCTaGCCACCGTCCCTTCTCTTG +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLVQAHP*PPSLLL
Trigger: CAAGAGAAGGGACGGTGGGCAGGGGTGAGCTTGGAC...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTTGCTCTGGATCTTGGTaGGGTGTAGGTCGGCCTCCA +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPCSGSW*GVGRPP
Trigger: TGGAGGCCGACCTACACCGCACCAAGATCCAGAGCA...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCTGGGAGACCGCCCAATaGTGCCGTCCACCTGGACTC +
Preference number: 4 (lower is better)
Translates to: HQWPQPQTQGQTLKALESWETAQ*CRPPGL
Trigger: GAGTCCAGGTGGACGGCAGCATTGGGCGGTCTCCCA...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCCAGCCCCCACGATGGTaGCAAGGGAGGACCTCATCC +
Preference number: 4 (lower is better)
Translates to: HQWPQPQTQGQTLKALESQPPRW*QGRTSS
Trigger: GGATGAGGTCCTCCCTTGCCACCATCGTGGGGGCTG...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTGGCACTCCACACCAGTaGTGTCCATCCTGCTGGCGA +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLGTPHQ*CPSCWR
Trigger: TCGCCAGCAGGATGGACACCACTGGTGTGGAGTGCC...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTTGGATTGTCCCACCTTaGGAAAGGTGCTCCTGGACC +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPWIVPP*ERCSWT
Trigger: GGTCCAGGAGCACCTTTCTCAAGGTGGGACAATCCA...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCCATCCAGAAGGGAGCTaGAGGTGGCACTGGCGAACG +
Preference number: 4 (lower is better)
Translates to: HQWPQPQTQGQTLKALESHPEGS*RWHWRT
Trigger: CGTTCGCCAGTGCCACCTTCAGCTCCCTTCTGGATG...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGGCCGTCCTGCAGCACTaGGCTGTTGCATGGGTTCCT +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWAVLQH*AVAWVP
Trigger: AGGAACCCATGCAACAGCTCAGTGCTGCAGGACGGC...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTAGGTCTGAGAGACCTTaGGCTGCTCAGCCACATGGT +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPRSERP*AAQPHG
Trigger: ACCATGTGGCTGAGCAGCTCAAGGTCTCTCAGACCT...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTCAATGCTGGCAAAGATaGCTCCCCCGCTGTCATGGT +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPQCWQR*LPRCHG
Trigger: ACCATGACAGCGGGGGAGTCATCTTTGCCAGCATTG...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTACCTTTCCTCTGCTTTaGCTGGCTCTCTCCAGGACC +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPTFPLL*LALSRT
Trigger: GGTCCTGGAGAGAGCCAGTCAAAGCAGAGGAAAGGT...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAACGTGAAGCAGGGCTCTaGTCAGCAGCTCCCAGTGCA +
Preference number: 4 (lower is better)
Translates to: RAMIPPVASAPDARPDPEREAGL*SAAPSA
Trigger: TGCACTGGGAGCTGCTGAGCAGAGCCCTGCTTCACG...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCGTGAAGCAGGGCTCTaGTCAGCAGCTCCCAGTGCA +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWREAGL*SAAPSA
Trigger: TGCACTGGGAGCTGCTGAGCAGAGCCCTGCTTCACG...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCTCCTCATGCCCAGGATaGCACACAGGACAGTCCCCG +
Preference number: 4 (lower is better)
Translates to: HQWPQPQTQGQTLKALESSSCPG*HTGQSP
Trigger: CGGGGACTGTCCTGTGTGGCATCCTGGGCATGAGGA...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTAGTGAGCTTCTCCTCTaGAGGAGGGCTCAGAAGTCC +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPSELLL*RRAQKS
Trigger: GGACTTCTGAGCCCTCCTGCAGAGGAGAAGCTCACT...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGGTCCAAGCTCACCCCTaGCCACCGTCCCTTCTCTTG +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWVQAHP*PPSLLL
Trigger: CAAGAGAAGGGACGGTGGGCAGGGGTGAGCTTGGAC...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGTCCAAGCTCACCCCTaGCCACCGTCCCTTCTCTTG +
Preference number: 4 (lower is better)
Translates to: RAMIPPVASAPDARPDPEVQAHP*PPSLLL
Trigger: CAAGAGAAGGGACGGTGGGCAGGGGTGAGCTTGGAC...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTATCACTGACACTCCCTaGCGATGCTGTCCCCTGTCC +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLITDTP*RCCPLS
Trigger: GGACAGGGGACAGCATCGCCAGGGAGTGTCAGTGAT...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTTCATGCTCTGGATCTTaGTGCGGTGTAGGTCGGCCT +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPSCSGS*CGVGRP
Trigger: AGGCCGACCTACACCGCACCAAGATCCAGAGCATGA...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCATCATGCTCTGGATCTTaGTGCGGTGTAGGTCGGCCT +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPSCSGS*CGVGRP
Trigger: AGGCCGACCTACACCGCACCAAGATCCAGAGCATGA...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAAGAGGTGTCCAAACCTaGAACTGCGCAGCCAGGGTC +
Preference number: 4 (lower is better)
Translates to: RAMIPPVASAPDARPDPERGVQT*NCAARV
Trigger: GACCCTGGCTGCGCAGTTTCAGGTTTGGACACCTCT...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR TCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTTGGATTGTCCCACCTTaGGAAAGGTGCTCCTGGACC +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLWIVPP*ERCSWT
Trigger: GGTCCAGGAGCACCTTTCTCAAGGTGGGACAATCCA...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCAAGTCCCCCAGAGTGCTaGTCTTCTCACACTTGGTCT +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPSPPEC*SSHTWS
Trigger: AGACCAAGTGTGAGAAGATCAGCACTCTGGGGGACT...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTGTGGCCTCAGATATGTaGACTTTGCCAGCCACTCCC +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLVASDM*TLPATP
Trigger: GGGAGTGGCTGGCAAAGTTCACATATCTGAGGCCAC...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCACCCGTGAGTCGTCAATaGCCTCAAAGCCAGAAAGCA +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPPVSRQ*PQSQKA
Trigger: TGCTTTCTGGCTTTGAGGTCATTGACGACTCACGGG...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCAGTAGCTGGTTCTATATaGTCGCTCCAGCTCCTGGTC +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPVAGSI*SLQLLV
Trigger: GACCAGGAGCTGGAGCGATCATATAGAACCAGCTAC...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCAACAATGGAACTGTCCTaGCACAGGGAGATGTGGAGC +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPTMELS*HREMWS
Trigger: GCTCCACATCTCCCTGTGTCAGGACAGTTCCATTGT...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCAAGGAGATGCTGTACTTaGAGTGCTTCGGGTGGGTGT +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPRRCCT*SASGGC
Trigger: ACACCCACCCGAAGCACTGCAAGTACAGCATCTCCT...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR GCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCAGCCACTCCCAGCTaGTCCATGAGATTAGCCAAG +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLPATPS*SMRLAK
Trigger: CTTGGCTAATCTCATGGAGCAGCTGGGAGTGGCTGG...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAAGAAAGCAGGGCCTCTaGACAGCTGCAGTGGGACTC +
Preference number: 4 (lower is better)
Translates to: RAMIPPVASAPDARPDPERKQGL*TAAVGL
Trigger: GAGTCCCACTGCAGCTGTGCAGAGGCCCTGCTTTCT...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTAGTGAGCTTCTCCTCTaGAGGAGGGCTCAGAAGTCC +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLSELLL*RRAQKS
Trigger: GGACTTCTGAGCCCTCCTGCAGAGGAGAAGCTCACT...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGCAGCACTGAGCTGTTaGATGGGTTCCTCTGGGCAC +
Preference number: 4 (lower is better)
Translates to: RAMIPPVASAPDARPDPEAALSC*MGSSGH
Trigger: GTGCCCAGAGGAACCCATGCAACAGCTCAGTGCTGC...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGGCAGCACTGAGCTGTTaGATGGGTTCCTCTGGGCAC +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWAALSC*MGSSGH
Trigger: GTGCCCAGAGGAACCCATGCAACAGCTCAGTGCTGC...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGTGCTCTGGATCTTGGTaGGGTGTAGGTCGGCCTCCA +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWCSGSW*GVGRPP
Trigger: TGGAGGCCGACCTACACCGCACCAAGATCCAGAGCA...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAATGCTCTGGATCTTGGTaGGGTGTAGGTCGGCCTCCA +
Preference number: 4 (lower is better)
Translates to: RAMIPPVASAPDARPDPECSGSW*GVGRPP
Trigger: TGGAGGCCGACCTACACCGCACCAAGATCCAGAGCA...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCATCTGGGTTTTGGAGTTaGGTCCTCCAGAAGCCTTGG +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPSGFWS*VLQKPW
Trigger: CCAAGGCTTCTGGAGGACCCAACTCCAAAACCCAGA...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCATCACAGAGGGAGGTCTaGCTGTTAGTGAGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPSQREV*LLVSFS
Trigger: GGAGAAGCTCACTAACAGCCAGACCTCCCTCTGTGA...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCGCCCAGCCCCCACGATaGTGGCAAGGGAGGACCTCA +
Preference number: 4 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCAQPPR*WQGRTS
Trigger: TGAGGTCCTCCCTTGCCACCATCGTGGGGGCTGGGC...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTAGTAGCCAGTCAGCCTaGTCTCTCATGCTCTGGATC +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPSSQSA*SLMLWI
Trigger: GATCCAGAGCATGAGAGACCAGGCTGACTGGCTACT...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTCGCGCATCATCTCCTTaGCGAACTCGAAGAGGATAC +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPRASSP*RTRRGY
Trigger: GTATCCTCTTCGAGTTCGCCAAGGAGATGATGCGCG...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAACTGGACTCGGATGTCTaGGGAGATGGACAGCTGGTG +
Preference number: 4 (lower is better)
Translates to: RAMIPPVASAPDARPDPELDSDV*GDGQLV
Trigger: CACCAGCTGTCCATCTCCCCAGACATCCGAGTCCAG...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCAACCTCACCTGAGACATaGCAAACAGATGGATCCCGA +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPTSPET*QTDGSR
Trigger: TCGGGATCCATCTGTTTGTCATGTCTCAGGTGAGGT...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTAGGTGGCATGCCTCTTaGCGGAATTCTCACTCTCCT +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLRWHAS*RNSHSP
Trigger: AGGAGAGTGAGAATTCCGTCAAGAGGCATGCCACCT...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTTGGCGCTCATCTTGGTaGAACCCACAATGTCTGCAA +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPWRSSW*NPQCLQ
Trigger: TTGCAGACATTGTGGGTTTCACCAAGATGAGCGCCA...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTGACTCCTTGGCTCTCTaGCCCGATATCAGGTATGTC +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLDSLAL*PDIRYV
Trigger: GACATACCTGATATCGGGTCAGAGAGCCAAGGAGTC...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCAAAGTTCAGGCTGAACTaGTTGATGGGCGGCTTGAAG +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPKFRLN*LMGGLK
Trigger: CTTCAAGCCGCCCATCAATCAGTTCAGCCTGAACTT...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTAAGTTCAGGCTGAACTaGTTGATGGGCGGCTTGAAG +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPKFRLN*LMGGLK
Trigger: CTTCAAGCCGCCCATCAATCAGTTCAGCCTGAACTT...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCCCACATGGTAGGGGATaGTGTTCCGCAGTAGCCAGT +
Preference number: 4 (lower is better)
Translates to: HQWPQPQTQGQTLKALESPHGRG*CSAVAS
Trigger: ACTGGCTACTGCGGAACATCATCCCCTACCATGTGG...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCAGGTCTGAGAGACCTTaGGCTGCTCAGCCACATGGT +
Preference number: 4 (lower is better)
Translates to: HQWPQPQTQGQTLKALESRSERP*AAQPHG
Trigger: ACCATGTGGCTGAGCAGCTCAAGGTCTCTCAGACCT...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCAATGCTGGCAAAGATaGCTCCCCCGCTGTCATGGT +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWQCWQR*LPRCHG
Trigger: ACCATGACAGCGGGGGAGTCATCTTTGCCAGCATTG...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCATACAGCTGGAGGAGATaGTGTACTTGCAGTGCTTCG +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPYSWRR*CTCSAS
Trigger: CGAAGCACTGCAAGTACAGCATCTCCTCCAGCTGTA...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR GCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCACACAGTTCCTCCTTCTaGACCAGCTTCAGATTTGGG +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPHSSSF*TSFRFG
Trigger: CCCAAATCTGAAGCTGGTGCAGAAGGAGGAACTGTG...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCCGAGCTGCTACAGCTaGAGGAGATGCTGTACTTGC +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWPSCYS*RRCCTC
Trigger: GCAAGTACAGCATCTCCTCCAGCTGTAGCAGCTCGG...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTTGCAGTGGGACTCCTTaGCTCTCTGACCCGATATCA +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLCSGTP*LSDPIS
Trigger: TGATATCGGGTCAGAGAGCCAAGGAGTCCCACTGCA...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTCGCTGTCATGGTTCTTaGAGTAGGTCTGAGAGACCT +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPRCHGS*SRSERP
Trigger: AGGTCTCTCAGACCTACTCCAAGAACCATGACAGCG...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTCTCTTCGCTCACCTaGATACGGCACTCCACACCA +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWLSSLT*IRHSTP
Trigger: TGGTGTGGAGTGCCGTATCCAGGTGAGCGAAGAGAG...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGATGGACAGCTGGTGCTaGGGAACCACTCCATTGTCC +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWMDSWC*GTTPLS
Trigger: GGACAATGGAGTGGTTCCCCAGCACCAGCTGTCCAT...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCGGAAGGCACCAAGTTaGCAATCTCATCTGTGGGAG +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLRKAPS*QSHLWE
Trigger: CTCCCACAGATGAGATTGCCAACTTGGTGCCTTCCG...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCATTCCTCTGCTTTGACTaGCTCTCTCCAGGACCTCTT +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPFLCFD*LSPGPL
Trigger: AAGAGGTCCTGGAGAGAGCCAGTCAAAGCAGAGGAA...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACCCGGGGAAGGCCCCCTaGGTCTCCCGAGCTGCTACA +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHPGKAP*VSRAAT
Trigger: TGTAGCAGCTCGGGAGACTCAGGGGGCCTTCCCCGG...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR TCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTACCTCACCTGAGACATaGCAAACAGATGGATCCCGA +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLTSPET*QTDGSR
Trigger: TCGGGATCCATCTGTTTGTCATGTCTCAGGTGAGGT...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTCCTGGACCTCACCTaGGACATGACAAACAGATGG +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWLLDLT*DMTNRW
Trigger: CCATCTGTTTGTCATGTCTCAGGTGAGGTCCAGGAG...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCCTCCTGGACCTCACCTaGGACATGACAAACAGATGG +
Preference number: 4 (lower is better)
Translates to: HQWPQPQTQGQTLKALESLLDLT*DMTNRW
Trigger: CCATCTGTTTGTCATGTCTCAGGTGAGGTCCAGGAG...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGAGGTGGCATGCCTCTTaGCGGAATTCTCACTCTCCT +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWRWHAS*RNSHSP
Trigger: AGGAGAGTGAGAATTCCGTCAAGAGGCATGCCACCT...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGAGTCCCCCAGAGTGCTaGTCTTCTCACACTTGGTCT +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWSPPEC*SSHTWS
Trigger: AGACCAAGTGTGAGAAGATCAGCACTCTGGGGGACT...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGGACTCCTTGGCTCTCTaGCCCGATATCAGGTATGTC +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWDSLAL*PDIRYV
Trigger: GACATACCTGATATCGGGTCAGAGAGCCAAGGAGTC...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCCCCGTGAGTCGTCAATaGCCTCAAAGCCAGAAAGCA +
Preference number: 4 (lower is better)
Translates to: HQWPQPQTQGQTLKALESPVSRQ*PQSQKA
Trigger: TGCTTTCTGGCTTTGAGGTCATTGACGACTCACGGG...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGGTAGCTGGTTCTATATaGTCGCTCCAGCTCCTGGTC +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWVAGSI*SLQLLV
Trigger: GACCAGGAGCTGGAGCGATCATATAGAACCAGCTAC...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTCAGGAGAATTCTTTATaGCCTCTTCCTGGTAGCTGG +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPQENSL*PLPGSW
Trigger: CCAGCTACCAGGAAGAGGTCATAAAGAATTCTCCTG...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTCAAGAACACGGTGGTTaGCAGAAACACATCCAGAAG +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPQEHGG*QKHIQK
Trigger: CTTCTGGATGTGTTTCTGTCAACCACCGTGTTCTTG...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGACAATGGAACTGTCCTaGCACAGGGAGATGTGGAGC +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWTMELS*HREMWS
Trigger: GCTCCACATCTCCCTGTGTCAGGACAGTTCCATTGT...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCATGGCCCCGATGGTCTTaGTCTTCTCGATGCTATTAT +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPWPRWS*SSRCYY
Trigger: ATAATAGCATCGAGAAGATCAAGACCATCGGGGCCA...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTGTGTTGGAGGACAGCTaGTTAGGGTTGATCTTGACC +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLVLEDS*LGLILT
Trigger: GGTCAAGATCAACCCTAAGCAGCTGTCCTCCAACAC...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR GCA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCAAGCGGCGCTGGGTCTaGGGAAAGCAGCGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSKRRWV*GKQRSR
Trigger: CCTGGAGCGCTGCTTTCCGCAGACCCAGCGCCGCTT...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR GCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCGGACAGCGAAATAGATaGTCCAGAGAAGGCAGGCGA +
Preference number: 4 (lower is better)
Translates to: HQWPQPQTQGQTLKALESGQRNR*SREGRR
Trigger: TCGCCTGCCTTCTCTGGAGCATCTATTTCGCTGTCC...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR GCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCATCCAGATCTTTGCCGTaGATAATGGATTGTCCCACC +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPSRSLP*IMDCPT
Trigger: GGTGGGACAATCCATTATGCACGGCAAAGATCTGGA...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCACTGACTTCTTCAATCTaGTGCATCTTAAAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPLTSSI*CILKGR
Trigger: CCGCCCCTTTAAGATGCAGCAGATTGAAGAAGTCAG...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTTTCTCACACTTGGTCTaGTCACACAGGCGGTCAAAG +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLFSHLV*SHRRSK
Trigger: CTTTGACCGCCTGTGTGAGCAGACCAAGTGTGAGAA...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTTGGAAACCTTTCCTCTaGTTTGACTGGCTCTCTCCA +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPWKPFL*FDWLSP
Trigger: TGGAGAGAGCCAGTCAAAGCAGAGGAAAGGTTTCCA...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCGGTCCCACCACCGGCTaGAGGCCCTCTCAAAAAGCT +
Preference number: 4 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCGPTTG*RPSQKA
Trigger: AGCTTTTTGAGAGGGCCTCCAGCCGGTGGTGGGACC...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTACCGGAAGCGGCGCTaGGTCTGCGGAAAGCAGCGC +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAYRKRR*VCGKQR
Trigger: GCGCTGCTTTCCGCAGACCCAGCGCCGCTTCCGGTA...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCTGCAGTGGGACTCCTTaGCTCTCTGACCCGATATCA +
Preference number: 4 (lower is better)
Translates to: HQWPQPQTQGQTLKALESCSGTP*LSDPIS
Trigger: TGATATCGGGTCAGAGAGCCAAGGAGTCCCACTGCA...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCTCTGGGTTTTGGAGTTaGGTCCTCCAGAAGCCTTGG +
Preference number: 4 (lower is better)
Translates to: HQWPQPQTQGQTLKALESSGFWS*VLQKPW
Trigger: CCAAGGCTTCTGGAGGACCCAACTCCAAAACCCAGA...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCAGTAGCCAGTCAGCCTaGTCTCTCATGCTCTGGATC +
Preference number: 4 (lower is better)
Translates to: HQWPQPQTQGQTLKALESSSQSA*SLMLWI
Trigger: GATCCAGAGCATGAGAGACCAGGCTGACTGGCTACT...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCGCTGTCATGGTTCTTaGAGTAGGTCTGAGAGACCT +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLRCHGS*SRSERP
Trigger: AGGTCTCTCAGACCTACTCCAAGAACCATGACAGCG...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCGGGGAGATGGACAGCTaGTGCTGGGGAACCACTCCA +
Preference number: 4 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCGEMDS*CWGTTP
Trigger: TGGAGTGGTTCCCCAGCACCAGCTGTCCATCTCCCC...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCATGCTGCCGTCCACCTaGACTCGGATGTCTGGGGAG +
Preference number: 4 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCMLPST*TRMSGE
Trigger: CTCCCCAGACATCCGAGTCCAGGTGGACGGCAGCAT...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAACGGAAGGCACCAAGTTaGCAATCTCATCTGTGGGAG +
Preference number: 4 (lower is better)
Translates to: RAMIPPVASAPDARPDPERKAPS*QSHLWE
Trigger: CTCCCACAGATGAGATTGCCAACTTGGTGCCTTCCG...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCCGGAAGGCACCAAGTTaGCAATCTCATCTGTGGGAG +
Preference number: 4 (lower is better)
Translates to: HQWPQPQTQGQTLKALESRKAPS*QSHLWE
Trigger: CTCCCACAGATGAGATTGCCAACTTGGTGCCTTCCG...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCAGAGGTGTCCAAACCTaGAACTGCGCAGCCAGGGTC +
Preference number: 4 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCRGVQT*NCAARV
Trigger: GACCCTGGCTGCGCAGTTTCAGGTTTGGACACCTCT...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR TCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCAACAGAGGTAACTGCATaGCTGTGTAGAGCAAAAGGA +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPTEVTA*LCRAKG
Trigger: TCCTTTTGCTCTACACAGTCATGCAGTTACCTCTGT...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR TCA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAACCTCACCTGAGACATaGCAAACAGATGGATCCCGA +
Preference number: 4 (lower is better)
Translates to: RAMIPPVASAPDARPDPETSPET*QTDGSR
Trigger: TCGGGATCCATCTGTTTGTCATGTCTCAGGTGAGGT...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGGTTATCAAAGGTTTTaGCAGTCTGCGCCAAATCAC +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPGYQRF*QSAPNH
Trigger: GTGATTTGGCGCAGACTGTCAAAACCTTTGATAACC...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCAGGAGAATTCTTTATaGCCTCTTCCTGGTAGCTGG +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLQENSL*PLPGSW
Trigger: CCAGCTACCAGGAAGAGGTCATAAAGAATTCTCCTG...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCATCTCAAACTCAGAGGTaGTGTGTGAATAGACAGCCA +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPSQTQR*CVNRQP
Trigger: TGGCTGTCTATTCACACATCACCTCTGAGTTTGAGA...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCCACCGATCAGCTCGTTaGGGACACGGTAGCACTCCT +
Preference number: 4 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCHRSAR*GHGSTP
Trigger: AGGAGTGCTACCGTGTCCTCAACGAGCTGATCGGTG...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACAAGCGGCGCTGGGTCTaGGGAAAGCAGCGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHKRRWV*GKQRSR
Trigger: CCTGGAGCGCTGCTTTCCGCAGACCCAGCGCCGCTT...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR GCA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAACAGATATGTGAACTTTaGCAGCCACTCCCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: RAMIPPVASAPDARPDPEQICEL*QPLPAA
Trigger: AGCAGCTGGGAGTGGCTGGCAAAGTTCACATATCTG...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCAAAGGTTTTGACAGTCTaGGCCAAATCACTGACACTC +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPKVLTV*AKSLTL
Trigger: GAGTGTCAGTGATTTGGCGCAGACTGTCAAAACCTT...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCACAGTTCCTCCTTCTaGACCAGCTTCAGATTTGGG +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWHSSSF*TSFRFG
Trigger: CCCAAATCTGAAGCTGGTGCAGAAGGAGGAACTGTG...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCGAGACCGCCCAATGCTaGCGTCCACCTGGACTCGGA +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAETAQC*RPPGLG
Trigger: TCCGAGTCCAGGTGGACGGCAGCATTGGGCGGTCTC...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTGGGAGACCGCCCAATaGTGCCGTCCACCTGGACTC +
Preference number: 4 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSWETAQ*CRPPGL
Trigger: GAGTCCAGGTGGACGGCAGCATTGGGCGGTCTCCCA...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTGGGAGACCGCCCAATaGTGCCGTCCACCTGGACTC +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAWETAQ*CRPPGL
Trigger: GAGTCCAGGTGGACGGCAGCATTGGGCGGTCTCCCA...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCAGCACTTCGATGCATATaGAGAAGCTTCCTACTTGAG +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPALRCI*RSFLLE
Trigger: CTCAAGTAGGAAGCTTCTCCATATGCATCGAAGTGC...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGCACTTCGATGCATATaGAGAAGCTTCCTACTTGAG +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPALRCI*RSFLLE
Trigger: CTCAAGTAGGAAGCTTCTCCATATGCATCGAAGTGC...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTTCGGTGCCTTCTGTATaGAGGACTTCTTCTTCCTGT +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLSVPSV*RTSSSC
Trigger: ACAGGAAGAAGAAGTCCTCCATACAGAAGGCACCGA...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGGTCCATTCTGGGTTTTaGAGTTGGGTCCTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWVHSGF*SWVLQK
Trigger: CTTCTGGAGGACCCAACTCCAAAACCCAGAATGGAC...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCCAGCCCCCACGATGGTaGCAAGGGAGGACCTCATCC +
Preference number: 4 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSQPPRW*QGRTSS
Trigger: GGATGAGGTCCTCCCTTGCCACCATCGTGGGGGCTG...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCCCAGCCCCCACGATaGTGGCAAGGGAGGACCTCA +
Preference number: 4 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSAQPPR*WQGRTS
Trigger: TGAGGTCCTCCCTTGCCACCATCGTGGGGGCTGGGC...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTCGAACACCAGCAGGGTaGGAGCCAGCGAGGTCCACG +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPRTPAG*EPARST
Trigger: CGTGGACCTCGCTGGCTCTCACCCTGCTGGTGTTCG...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR TCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCCAAGAACACGGTGGTTaGCAGAAACACATCCAGAAG +
Preference number: 4 (lower is better)
Translates to: HQWPQPQTQGQTLKALESQEHGG*QKHIQK
Trigger: CTTCTGGATGTGTTTCTGTCAACCACCGTGTTCTTG...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGTGGCCCCGATGGTCTTaGTCTTCTCGATGCTATTAT +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWWPRWS*SSRCYY
Trigger: ATAATAGCATCGAGAAGATCAAGACCATCGGGGCCA...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGGGCCGTGTTCAGCCCTaGGGCTGCCATGTATGTGGC +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQGRVQP*GCHVCG
Trigger: GCCACATACATGGCAGCCTCAGGGCTGAACACGGCC...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCAAAAGGAGCACTTCGATaGATATGGAGAAGCTTCCTA +
Preference number: 4 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPKGALR*IWRSFL
Trigger: TAGGAAGCTTCTCCATATGCATCGAAGTGCTCCTTT...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR GCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCTCCAGATCTTTGCCGTaGATAATGGATTGTCCCACC +
Preference number: 4 (lower is better)
Translates to: HQWPQPQTQGQTLKALESSRSLP*IMDCPT
Trigger: GGTGGGACAATCCATTATGCACGGCAAAGATCTGGA...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCCCAGCCACTCCCAGCTaGTCCATGAGATTAGCCAAG +
Preference number: 4 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCPATPS*SMRLAK
Trigger: CTTGGCTAATCTCATGGAGCAGCTGGGAGTGGCTGG...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAATTCAAACCTTTCAACTaGTCAGCCACCACACTCTGC +
Preference number: 4 (lower is better)
Translates to: RAMIPPVASAPDARPDPEFKPFN*SATTLC
Trigger: GCAGAGTGTGGTGGCTGACCAGTTGAAAGGTTTGAA...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTGGGAGGAGGGCTGACTaGTCCAAGCTCACCCCTGCC +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPGRRAD*SKLTPA
Trigger: GGCAGGGGTGAGCTTGGACCAGTCAGCCCTCCTCCC...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGTTGCATGGGTTCCTCTaGGCACTGAAATTCTGTGCT +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWLHGFL*ALKFCA
Trigger: AGCACAGAATTTCAGTGCCCAGAGGAACCCATGCAA...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCTCATGCTCTGGATCTTaGTGCGGTGTAGGTCGGCCT +
Preference number: 4 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCSCSGS*CGVGRP
Trigger: AGGCCGACCTACACCGCACCAAGATCCAGAGCATGA...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCACGCAGATGCTCCTGTaGGTGGCCACCCTCCTGACA +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTATQMLL*VATLLT
Trigger: TGTCAGGAGGGTGGCCACCCACAGGAGCATCTGCGT...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCATGCTGCCGTCCACCTaGACTCGGATGTCTGGGGAG +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAMLPST*TRMSGE
Trigger: CTCCCCAGACATCCGAGTCCAGGTGGACGGCAGCAT...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGGTTGCTGTCTCCGCTTaGGTCGCAGCTCACCTCGGT +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQVAVSA*VAAHLG
Trigger: ACCGAGGTGAGCTGCGACTCAAGCGGAGACAGCAAC...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR TCA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGATTCTTGGCATCACTaGATGAATCATCCTCTCTTT +
Preference number: 4 (lower is better)
Translates to: PRAMIPPVASAPDARPDPDSWHH*MNHPLF
Trigger: AAAGAGAGGATGATTCATTCAGTGATGCCAAGAATC...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCATCCAGAAGGGAGCTaGAGGTGGCACTGGCGAACG +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQHPEGS*RWHWRT
Trigger: CGTTCGCCAGTGCCACCTTCAGCTCCCTTCTGGATG...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGCATCCAGAAGGGAGCTaGAGGTGGCACTGGCGAACG +
Preference number: 4 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSHPEGS*RWHWRT
Trigger: CGTTCGCCAGTGCCACCTTCAGCTCCCTTCTGGATG...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTATAACATATTGTTGTTaGAGTCATCCACCACGCGCA +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLITYCC*SHPPRA
Trigger: TGCGCGTGGTGGATGACTTCAACAACAATATGTTAT...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTCTGCCCTTTCCCCTTaGCATTCACGGTCCCTCGGT +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTASALSP*HSRSLG
Trigger: ACCGAGGGACCGTGAATGTCAAGGGGAAAGGGCAGA...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACCGTGAAGCAGGGCTCTaGTCAGCAGCTCCCAGTGCA +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHREAGL*SAAPSA
Trigger: TGCACTGGGAGCTGCTGAGCAGAGCCCTGCTTCACG...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTACTTCTTCAATCTGCTaGATCTTAAAGGGGCGGAAT +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLTSSIC*ILKGRN
Trigger: ATTCCGCCCCTTTAAGATGCAGCAGATTGAAGAAGT...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCGATGGCTTTTATCATaGCTAAGCCCATTTCAATGC +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLRWLLS*LSPFQC
Trigger: GCATTGAAATGGGCTTAGGCATGATAAAAGCCATCG...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGTTCTCCTGGCAGAACTaGTCGATGGCTTTTATCATG +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWFSWQN*SMAFIM
Trigger: CATGATAAAAGCCATCGAGCAGTTCTGCCAGGAGAA...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAATTCTCCTGGCAGAACTaGTCGATGGCTTTTATCATG +
Preference number: 4 (lower is better)
Translates to: RAMIPPVASAPDARPDPEFSWQN*SMAFIM
Trigger: CATGATAAAAGCCATCGAGCAGTTCTGCCAGGAGAA...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCGCAGCACTGAGCTGTTaGATGGGTTCCTCTGGGCAC +
Preference number: 4 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSAALSC*MGSSGH
Trigger: GTGCCCAGAGGAACCCATGCAACAGCTCAGTGCTGC...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCATCACTGACACTCCCTaGCGATGCTGTCCCCTGTCC +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAITDTP*RCCPLS
Trigger: GGACAGGGGACAGCATCGCCAGGGAGTGTCAGTGAT...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCTCACAGAGGGAGGTCTaGCTGTTAGTGAGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCSQREV*LLVSFS
Trigger: GGAGAAGCTCACTAACAGCCAGACCTCCCTCTGTGA...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTCAGCCCCCACGATGGTaGCAAGGGAGGACCTCATCC +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPQPPRW*QGRTSS
Trigger: GGATGAGGTCCTCCCTTGCCACCATCGTGGGGGCTG...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGACGCAGATGCTCCTGTaGGTGGCCACCCTCCTGACA +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQTQMLL*VATLLT
Trigger: TGTCAGGAGGGTGGCCACCCACAGGAGCATCTGCGT...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACGGGGAGATGGACAGCTaGTGCTGGGGAACCACTCCA +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHGEMDS*CWGTTP
Trigger: TGGAGTGGTTCCCCAGCACCAGCTGTCCATCTCCCC...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGGGGAGATGGACAGCTaGTGCTGGGGAACCACTCCA +
Preference number: 4 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSGEMDS*CWGTTP
Trigger: TGGAGTGGTTCCCCAGCACCAGCTGTCCATCTCCCC...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACATGCTGCCGTCCACCTaGACTCGGATGTCTGGGGAG +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHMLPST*TRMSGE
Trigger: CTCCCCAGACATCCGAGTCCAGGTGGACGGCAGCAT...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTAGCTGTCCTTTTCTATaGCTTTGCCAAATGGAAACC +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLSCPFL*LCQMET
Trigger: GGTTTCCATTTGGCAAAGCCATAGAAAAGGACAGCT...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCGTGGCCTCAGATATGTaGACTTTGCCAGCCACTCCC +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAVASDM*TLPATP
Trigger: GGGAGTGGCTGGCAAAGTTCACATATCTGAGGCCAC...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCCTCAGAGGTGATGTGTaGATAGACAGCCAGGGCAGG +
Preference number: 4 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSLRGDV*IDSQGR
Trigger: CCTGCCCTGGCTGTCTATTCACACATCACCTCTGAG...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTGCCGTCCTGCAGCACTaGGCTGTTGCATGGGTTCCT +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPAVLQH*AVAWVP
Trigger: AGGAACCCATGCAACAGCTCAGTGCTGCAGGACGGC...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCCCACATGGTAGGGGATaGTGTTCCGCAGTAGCCAGT +
Preference number: 4 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSPHGRG*CSAVAS
Trigger: ACTGGCTACTGCGGAACATCATCCCCTACCATGTGG...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCACCGATCAGCTCGTTaGGGACACGGTAGCACTCCT +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQHRSAR*GHGSTP
Trigger: AGGAGTGCTACCGTGTCCTCAACGAGCTGATCGGTG...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGCACCGATCAGCTCGTTaGGGACACGGTAGCACTCCT +
Preference number: 4 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSHRSAR*GHGSTP
Trigger: AGGAGTGCTACCGTGTCCTCAACGAGCTGATCGGTG...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGTCTGCCCTTTCCCCTTaGCATTCACGGTCCCTCGGT +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQSALSP*HSRSLG
Trigger: ACCGAGGGACCGTGAATGTCAAGGGGAAAGGGCAGA...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGCGCAGCTCACCTCGGTaGTATGGTGATGCAGCAGCT +
Preference number: 4 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSRSSPR*YGDAAA
Trigger: AGCTGCTGCATCACCATAGCACCGAGGTGAGCTGCG...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR GCA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAACTTCTTCAATCTGCTaGATCTTAAAGGGGCGGAAT +
Preference number: 4 (lower is better)
Translates to: RAMIPPVASAPDARPDPETSSIC*ILKGRN
Trigger: ATTCCGCCCCTTTAAGATGCAGCAGATTGAAGAAGT...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCCCAGCCACTCCCAGCTaGTCCATGAGATTAGCCAAG +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAPATPS*SMRLAK
Trigger: CTTGGCTAATCTCATGGAGCAGCTGGGAGTGGCTGG...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCCACGGTAGCACTCCTTaGCCCCCTCATAGTTCTCCT +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAHGSTP*PPHSSP
Trigger: AGGAGAACTATGAGGGGGGCAAGGAGTGCTACCGTG...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGTTGCAGTGCTTCGGGTaGGTGTTGGAGGACAGCTGC +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQLQCFG*VLEDSC
Trigger: GCAGCTGTCCTCCAACACCCACCCGAAGCACTGCAA...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCCCGAGCTGCTACAGCTaGAGGAGATGCTGTACTTGC +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAPSCYS*RRCCTC
Trigger: GCAAGTACAGCATCTCCTCCAGCTGTAGCAGCTCGG...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGTCATGGAGTCGAATTTaGGGTCCCACCACCGGCTGG +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQSWSRI*GPTTGW
Trigger: CCAGCCGGTGGTGGGACCCCAAATTCGACTCCATGA...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGATCACTGACACTCCCTaGCGATGCTGTCCCCTGTCC +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQITDTP*RCCPLS
Trigger: GGACAGGGGACAGCATCGCCAGGGAGTGTCAGTGAT...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCGTCCATTCTGGGTTTTaGAGTTGGGTCCTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCVHSGF*SWVLQK
Trigger: CTTCTGGAGGACCCAACTCCAAAACCCAGAATGGAC...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTGGCACTCCACACCAGTaGTGTCCATCCTGCTGGCGA +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPGTPHQ*CPSCWR
Trigger: TCGCCAGCAGGATGGACACCACTGGTGTGGAGTGCC...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCCTCTCTTCGCTCACCTaGATACGGCACTCCACACCA +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTALSSLT*IRHSTP
Trigger: TGGTGTGGAGTGCCGTATCCAGGTGAGCGAAGAGAG...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCATTGTCCGTGCACTTTaGGTAAAGGTAGGTCTTCAT +
Preference number: 4 (lower is better)
Translates to: HQWPQPQTQGQTLKALESIVRAL*VKVGLH
Trigger: ATGAAGACCTACCTTTACCCAAAGTGCACGGACAAT...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCATGGACAGCTGGTGCTaGGGAACCACTCCATTGTCC +
Preference number: 4 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSMDSWC*GTTPLS
Trigger: GGACAATGGAGTGGTTCCCCAGCACCAGCTGTCCAT...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTGGACTCGGATGTCTaGGGAGATGGACAGCTGGTG +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQLDSDV*GDGQLV
Trigger: CACCAGCTGTCCATCTCCCCAGACATCCGAGTCCAG...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCTTCCTCTGCTTTGACTaGCTCTCTCCAGGACCTCTT +
Preference number: 4 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCFLCFD*LSPGPL
Trigger: AAGAGGTCCTGGAGAGAGCCAGTCAAAGCAGAGGAA...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGGATTCTTGGCATCACTaGATGAATCATCCTCTCTTT +
Preference number: 4 (lower is better)
Translates to: GQTLKALESLHAADWIPWDSWHH*MNHPLF
Trigger: AAAGAGAGGATGATTCATTCAGTGATGCCAAGAATC...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCTGCAAATAAAATACTaGCTTCTTCAATCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLLQIKY*LLQSAA
Trigger: TGCAGCAGATTGAAGAAGTCAGTATTTTATTTGCAG...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCAGTCCCCCAGAGTGCTaGTCTTCTCACACTTGGTCT +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTASPPEC*SSHTWS
Trigger: AGACCAAGTGTGAGAAGATCAGCACTCTGGGGGACT...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCCAGGAGAATTCTTTATaGCCTCTTCCTGGTAGCTGG +
Preference number: 4 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCQENSL*PLPGSW
Trigger: CCAGCTACCAGGAAGAGGTCATAAAGAATTCTCCTG...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCAGAGGTGATGTGTaGATAGACAGCCAGGGCAGG +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQLRGDV*IDSQGR
Trigger: CCTGCCCTGGCTGTCTATTCACACATCACCTCTGAG...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCACCTCATCCAGGAGCTaGGCTGGCAGAAGTTACAGT +
Preference number: 4 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSTSSRS*AGRSYS
Trigger: ACTGTAACTTCTGCCAGCTCAGCTCCTGGATGAGGT...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCCACATGGTAGGGGATaGTGTTCCGCAGTAGCCAGT +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQPHGRG*CSAVAS
Trigger: ACTGGCTACTGCGGAACATCATCCCCTACCATGTGG...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGAGGTCTGAGAGACCTTaGGCTGCTCAGCCACATGGT +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQRSERP*AAQPHG
Trigger: ACCATGTGGCTGAGCAGCTCAAGGTCTCTCAGACCT...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCAATGCTGGCAAAGATaGCTCCCCCGCTGTCATGGT +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQQCWQR*LPRCHG
Trigger: ACCATGACAGCGGGGGAGTCATCTTTGCCAGCATTG...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCTGGCCCCGATGGTCTTaGTCTTCTCGATGCTATTAT +
Preference number: 4 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCWPRWS*SSRCYY
Trigger: ATAATAGCATCGAGAAGATCAAGACCATCGGGGCCA...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTCTGCCCTTTCCCCTTaGCATTCACGGTCCCTCGGT +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPSALSP*HSRSLG
Trigger: ACCGAGGGACCGTGAATGTCAAGGGGAAAGGGCAGA...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGACCTTTCCTCTGCTTTaGCTGGCTCTCTCCAGGACC +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQTFPLL*LALSRT
Trigger: GGTCCTGGAGAGAGCCAGTCAAAGCAGAGGAAAGGT...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCGGACAGCGAAATAGATaGTCCAGAGAAGGCAGGCGA +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAGQRNR*SREGRR
Trigger: TCGCCTGCCTTCTCTGGAGCATCTATTTCGCTGTCC...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR GCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACAGTGAGCTTCTCCTCTaGAGGAGGGCTCAGAAGTCC +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHSELLL*RRAQKS
Trigger: GGACTTCTGAGCCCTCCTGCAGAGGAGAAGCTCACT...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCACGGTAGCACTCCTTaGCCCCCTCATAGTTCTCCT +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQHGSTP*PPHSSP
Trigger: AGGAGAACTATGAGGGGGGCAAGGAGTGCTACCGTG...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTTGCAGTGCTTCGGGTaGGTGTTGGAGGACAGCTGC +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPLQCFG*VLEDSC
Trigger: GCAGCTGTCCTCCAACACCCACCCGAAGCACTGCAA...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTCATGGAGTCGAATTTaGGGTCCCACCACCGGCTGG +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPSWSRI*GPTTGW
Trigger: CCAGCCGGTGGTGGGACCCCAAATTCGACTCCATGA...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCCTCCTCCAGGTTCATaGAGTCGAATTTGGGGTCCC +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQPPPGS*SRIWGP
Trigger: GGGACCCCAAATTCGACTCCATGAACCTGGAGGAGG...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTGGTCTCTCATGCTCTaGATCTTGGTGCGGTGTAGG +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAWSLML*ILVRCR
Trigger: CCTACACCGCACCAAGATCCAGAGCATGAGAGACCA...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCAGTAGCCAGTCAGCCTaGTCTCTCATGCTCTGGATC +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTASSQSA*SLMLWI
Trigger: GATCCAGAGCATGAGAGACCAGGCTGACTGGCTACT...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACCTCTCTTCGCTCACCTaGATACGGCACTCCACACCA +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHLSSLT*IRHSTP
Trigger: TGGTGTGGAGTGCCGTATCCAGGTGAGCGAAGAGAG...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTCTGGACTCGGATGTCTaGGGAGATGGACAGCTGGTG +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPLDSDV*GDGQLV
Trigger: CACCAGCTGTCCATCTCCCCAGACATCCGAGTCCAG...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGCTCCTGGACCTCACCTaGGACATGACAAACAGATGG +
Preference number: 4 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSLLDLT*DMTNRW
Trigger: CCATCTGTTTGTCATGTCTCAGGTGAGGTCCAGGAG...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGATTGTCCCACCTTaGGAAAGGTGCTCCTGGACC +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPWIVPP*ERCSWT
Trigger: GGTCCAGGAGCACCTTTCTCAAGGTGGGACAATCCA...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGAGGTGGCATGCCTCTTaGCGGAATTCTCACTCTCCT +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQRWHAS*RNSHSP
Trigger: AGGAGAGTGAGAATTCCGTCAAGAGGCATGCCACCT...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTGGCGCTCATCTTGGTaGAACCCACAATGTCTGCAA +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAWRSSW*NPQCLQ
Trigger: TTGCAGACATTGTGGGTTTCACCAAGATGAGCGCCA...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGGACTCCTTGGCTCTCTaGCCCGATATCAGGTATGTC +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQDSLAL*PDIRYV
Trigger: GACATACCTGATATCGGGTCAGAGAGCCAAGGAGTC...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGCCCGTGAGTCGTCAATaGCCTCAAAGCCAGAAAGCA +
Preference number: 4 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSPVSRQ*PQSQKA
Trigger: TGCTTTCTGGCTTTGAGGTCATTGACGACTCACGGG...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACGTAGCTGGTTCTATATaGTCGCTCCAGCTCCTGGTC +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHVAGSI*SLQLLV
Trigger: GACCAGGAGCTGGAGCGATCATATAGAACCAGCTAC...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGACCTCATCCAGGAGCTaGGCTGGCAGAAGTTACAGT +
Preference number: 4 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSTSSRS*AGRSYS
Trigger: ACTGTAACTTCTGCCAGCTCAGCTCCTGGATGAGGT...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACACCTCATCCAGGAGCTaGGCTGGCAGAAGTTACAGT +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHTSSRS*AGRSYS
Trigger: ACTGTAACTTCTGCCAGCTCAGCTCCTGGATGAGGT...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGACAATGGAACTGTCCTaGCACAGGGAGATGTGGAGC +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQTMELS*HREMWS
Trigger: GCTCCACATCTCCCTGTGTCAGGACAGTTCCATTGT...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCCAGATATGTGAACTTTaGCAGCCACTCCCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAQICEL*QPLPAA
Trigger: AGCAGCTGGGAGTGGCTGGCAAAGTTCACATATCTG...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTCCTCCTCCAGGTTCATaGAGTCGAATTTGGGGTCCC +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPPPPGS*SRIWGP
Trigger: GGGACCCCAAATTCGACTCCATGAACCTGGAGGAGG...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGTCTGGGTTTTGGAGTTaGGTCCTCCAGAAGCCTTGG +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQSGFWS*VLQKPW
Trigger: CCAAGGCTTCTGGAGGACCCAACTCCAAAACCCAGA...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGTCACAGAGGGAGGTCTaGCTGTTAGTGAGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSSQREV*LLVSFS
Trigger: GGAGAAGCTCACTAACAGCCAGACCTCCCTCTGTGA...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACTGGTCTCTCATGCTCTaGATCTTGGTGCGGTGTAGG +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHWSLML*ILVRCR
Trigger: CCTACACCGCACCAAGATCCAGAGCATGAGAGACCA...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCCGCTGTCATGGTTCTTaGAGTAGGTCTGAGAGACCT +
Preference number: 4 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSRCHGS*SRSERP
Trigger: AGGTCTCTCAGACCTACTCCAAGAACCATGACAGCG...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACCGCGCATCATCTCCTTaGCGAACTCGAAGAGGATAC +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHRASSP*RTRRGY
Trigger: GTATCCTCTTCGAGTTCGCCAAGGAGATGATGCGCG...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTATGGACAGCTGGTGCTaGGGAACCACTCCATTGTCC +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPMDSWC*GTTPLS
Trigger: GGACAATGGAGTGGTTCCCCAGCACCAGCTGTCCAT...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGTGGCGCTCATCTTGGTaGAACCCACAATGTCTGCAA +
Preference number: 4 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSWRSSW*NPQCLQ
Trigger: TTGCAGACATTGTGGGTTTCACCAAGATGAGCGCCA...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACAAGTTCAGGCTGAACTaGTTGATGGGCGGCTTGAAG +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHKFRLN*LMGGLK
Trigger: CTTCAAGCCGCCCATCAATCAGTTCAGCCTGAACTT...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCCAAGAACACGGTGGTTaGCAGAAACACATCCAGAAG +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAQEHGG*QKHIQK
Trigger: CTTCTGGATGTGTTTCTGTCAACCACCGTGTTCTTG...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCACTTTAGGAAGCAGGTaGTGGAGAGAATCAAGAACA +
Preference number: 4 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCTLGSR*WRESRT
Trigger: TGTTCTTGATTCTCTCCATCACCTGCTTCCTAAAGT...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACGTGTTGGAGGACAGCTaGTTAGGGTTGATCTTGACC +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHVLEDS*LGLILT
Trigger: GGTCAAGATCAACCCTAAGCAGCTGTCCTCCAACAC...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR GCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGTACAGCTGGAGGAGATaGTGTACTTGCAGTGCTTCG +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQYSWRR*CTCSAS
Trigger: CGAAGCACTGCAAGTACAGCATCTCCTCCAGCTGTA...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR GCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCCTGACTTCTTCAATCTaGTGCATCTTAAAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTALTSSI*CILKGR
Trigger: CCGCCCCTTTAAGATGCAGCAGATTGAAGAAGTCAG...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGTTCTCACACTTGGTCTaGTCACACAGGCGGTCAAAG +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQFSHLV*SHRRSK
Trigger: CTTTGACCGCCTGTGTGAGCAGACCAAGTGTGAGAA...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACTTCTCACACTTGGTCTaGTCACACAGGCGGTCAAAG +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHFSHLV*SHRRSK
Trigger: CTTTGACCGCCTGTGTGAGCAGACCAAGTGTGAGAA...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTCGGTGCCTTCTGTATaGAGGACTTCTTCTTCCTGT +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTASVPSV*RTSSSC
Trigger: ACAGGAAGAAGAAGTCCTCCATACAGAAGGCACCGA...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCGGCAGAACTGCTCGATaGCTTTTATCATGCCTAAGC +
Preference number: 4 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSGRTAR*LLSCLS
Trigger: GCTTAGGCATGATAAAAGCCATCGAGCAGTTCTGCC...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTCGCGCATCATCTCCTTaGCGAACTCGAAGAGGATAC +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPRASSP*RTRRGY
Trigger: GTATCCTCTTCGAGTTCGCCAAGGAGATGATGCGCG...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACTTCCTCTGCTTTGACTaGCTCTCTCCAGGACCTCTT +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHFLCFD*LSPGPL
Trigger: AAGAGGTCCTGGAGAGAGCCAGTCAAAGCAGAGGAA...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCCTTGGCATCACTGAATaGATCATCCTCTCTTTCAGG +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTALGITE*IILSFR
Trigger: CCTGAAAGAGAGGATGATTCATTCAGTGATGCCAAG...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCGGTTATCAAAGGTTTTaGCAGTCTGCGCCAAATCAC +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAGYQRF*QSAPNH
Trigger: GTGATTTGGCGCAGACTGTCAAAACCTTTGATAACC...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCATTTGGGAGCAAATGTaGTTCCACAAGAAGGGCAAG +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAIWEQM*FHKKGK
Trigger: CTTGCCCTTCTTGTGGAATCACATTTGCTCCCAAAT...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCAAACTCAGAGGTaGTGTGTGAATAGACAGCCA +
Preference number: 4 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSSQTQR*CVNRQP
Trigger: TGGCTGTCTATTCACACATCACCTCTGAGTTTGAGA...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGTCCAGATCTTTGCCGTaGATAATGGATTGTCCCACC +
Preference number: 4 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSSRSLP*IMDCPT
Trigger: GGTGGGACAATCCATTATGCACGGCAAAGATCTGGA...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTGACTTCTTCAATCTaGTGCATCTTAAAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQLTSSI*CILKGR
Trigger: CCGCCCCTTTAAGATGCAGCAGATTGAAGAAGTCAG...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTCAGATATGTGAACTTTaGCAGCCACTCCCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPQICEL*QPLPAA
Trigger: AGCAGCTGGGAGTGGCTGGCAAAGTTCACATATCTG...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGTGGAAACCTTTCCTCTaGTTTGACTGGCTCTCTCCA +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQWKPFL*FDWLSP
Trigger: TGGAGAGAGCCAGTCAAAGCAGAGGAAAGGTTTCCA...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACTGGAAACCTTTCCTCTaGTTTGACTGGCTCTCTCCA +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHWKPFL*FDWLSP
Trigger: TGGAGAGAGCCAGTCAAAGCAGAGGAAAGGTTTCCA...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGGCAGAACTGCTCGATaGCTTTTATCATGCCTAAGC +
Preference number: 4 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSGRTAR*LLSCLS
Trigger: GCTTAGGCATGATAAAAGCCATCGAGCAGTTCTGCC...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACGGCAGAACTGCTCGATaGCTTTTATCATGCCTAAGC +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHGRTAR*LLSCLS
Trigger: GCTTAGGCATGATAAAAGCCATCGAGCAGTTCTGCC...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACTTCAAACCTTTCAACTaGTCAGCCACCACACTCTGC +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHFKPFN*SATTLC
Trigger: GCAGAGTGTGGTGGCTGACCAGTTGAAAGGTTTGAA...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGTTGCATGGGTTCCTCTaGGCACTGAAATTCTGTGCT +
Preference number: 4 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSLHGFL*ALKFCA
Trigger: AGCACAGAATTTCAGTGCCCAGAGGAACCCATGCAA...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACTTGCATGGGTTCCTCTaGGCACTGAAATTCTGTGCT +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHLHGFL*ALKFCA
Trigger: AGCACAGAATTTCAGTGCCCAGAGGAACCCATGCAA...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTTGGCATCACTGAATaGATCATCCTCTCTTTCAGG +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQLGITE*IILSFR
Trigger: CCTGAAAGAGAGGATGATTCATTCAGTGATGCCAAG...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTTAAGTCGTCGGCTATaGTTCTTGGCATCACTGAAT +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTALSRRL*FLASLN
Trigger: ATTCAGTGATGCCAAGAATCATAGCCGACGACTTAA...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACGGTTATCAAAGGTTTTaGCAGTCTGCGCCAAATCAC +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHGYQRF*QSAPNH
Trigger: GTGATTTGGCGCAGACTGTCAAAACCTTTGATAACC...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACATTTGGGAGCAAATGTaGTTCCACAAGAAGGGCAAG +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHIWEQM*FHKKGK
Trigger: CTTGCCCTTCTTGTGGAATCACATTTGCTCCCAAAT...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCACTTTAGGAAGCAGGTaGTGGAGAGAATCAAGAACA +
Preference number: 4 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSTLGSR*WRESRT
Trigger: TGTTCTTGATTCTCTCCATCACCTGCTTCCTAAAGT...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACTCTCAAACTCAGAGGTaGTGTGTGAATAGACAGCCA +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHSQTQR*CVNRQP
Trigger: TGGCTGTCTATTCACACATCACCTCTGAGTTTGAGA...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCCGATGGCTTTTATCATaGCTAAGCCCATTTCAATGC +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTARWLLS*LSPFQC
Trigger: GCATTGAAATGGGCTTAGGCATGATAAAAGCCATCG...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGTTCTCCTGGCAGAACTaGTCGATGGCTTTTATCATG +
Preference number: 4 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSFSWQN*SMAFIM
Trigger: CATGATAAAAGCCATCGAGCAGTTCTGCCAGGAGAA...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCCTAAGTATTTTGCAGTaGCCTCAGATATGTGAACTT +
Preference number: 4 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCLSILQ*PQICEL
Trigger: AAGTTCACATATCTGAGGCCACTGCAAAATACTTAG...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCATTGTCCGTGCACTTTaGGTAAAGGTAGGTCTTCAT +
Preference number: 4 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSIVRAL*VKVGLH
Trigger: ATGAAGACCTACCTTTACCCAAAGTGCACGGACAAT...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTACAGAGGTAACTGCATaGCTGTGTAGAGCAAAAGGA +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPTEVTA*LCRAKG
Trigger: TCCTTTTGCTCTACACAGTCATGCAGTTACCTCTGT...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR TCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTCTTGGCATCACTGAATaGATCATCCTCTCTTTCAGG +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPLGITE*IILSFR
Trigger: CCTGAAAGAGAGGATGATTCATTCAGTGATGCCAAG...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGTTAAGTCGTCGGCTATaGTTCTTGGCATCACTGAAT +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQLSRRL*FLASLN
Trigger: ATTCAGTGATGCCAAGAATCATAGCCGACGACTTAA...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGACTTTAGGAAGCAGGTaGTGGAGAGAATCAAGAACA +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQTLGSR*WRESRT
Trigger: TGTTCTTGATTCTCTCCATCACCTGCTTCCTAAAGT...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCACTTTGTGCATGTCATaGCATCCTCTAGGAAAAACA +
Preference number: 4 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSTLCMS*HPLGKT
Trigger: TGTTTTTCCTAGAGGATGTCATGACATGCACAAAGT...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCACTTTGTGCATGTCATaGCATCCTCTAGGAAAAACA +
Preference number: 4 (lower is better)
Translates to: HVTPHLGTETEVLDSTTATLCMS*HPLGKT
Trigger: TGTTTTTCCTAGAGGATGTCATGACATGCACAAAGT...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACATAACATATTGTTGTTaGAGTCATCCACCACGCGCA +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHITYCC*SHPPRA
Trigger: TGCGCGTGGTGGATGACTTCAACAACAATATGTTAT...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGAAAGGAGCACTTCGATaGATATGGAGAAGCTTCCTA +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQKGALR*IWRSFL
Trigger: TAGGAAGCTTCTCCATATGCATCGAAGTGCTCCTTT...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR GCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACACTTCTTCAATCTGCTaGATCTTAAAGGGGCGGAAT +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHTSSIC*ILKGRN
Trigger: ATTCCGCCCCTTTAAGATGCAGCAGATTGAAGAAGT...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCGATGGCTTTTATCATaGCTAAGCCCATTTCAATGC +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQRWLLS*LSPFQC
Trigger: GCATTGAAATGGGCTTAGGCATGATAAAAGCCATCG...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR GCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTAAGGTTTTGACAGTCTaGGCCAAATCACTGACACTC +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPKVLTV*AKSLTL
Trigger: GAGTGTCAGTGATTTGGCGCAGACTGTCAAAACCTT...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGATTGTCCGTGCACTTTaGGTAAAGGTAGGTCTTCAT +
Preference number: 4 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSIVRAL*VKVGLH
Trigger: ATGAAGACCTACCTTTACCCAAAGTGCACGGACAAT...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACAGCTGTCCTTTTCTATaGCTTTGCCAAATGGAAACC +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHSCPFL*LCQMET
Trigger: GGTTTCCATTTGGCAAAGCCATAGAAAAGGACAGCT...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCCTGCAAATAAAATACTaGCTTCTTCAATCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSLQIKY*LLQSAA
Trigger: TGCAGCAGATTGAAGAAGTCAGTATTTTATTTGCAG...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGACTTTGTGCATGTCATaGCATCCTCTAGGAAAAACA +
Preference number: 4 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQTLCMS*HPLGKT
Trigger: TGTTTTTCCTAGAGGATGTCATGACATGCACAAAGT...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTATAACATATTGTTGTTaGAGTCATCCACCACGCGCA +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPITYCC*SHPPRA
Trigger: TGCGCGTGGTGGATGACTTCAACAACAATATGTTAT...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTAGCTGTCCTTTTCTATaGCTTTGCCAAATGGAAACC +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPSCPFL*LCQMET
Trigger: GGTTTCCATTTGGCAAAGCCATAGAAAAGGACAGCT...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR TCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACCTGCAAATAAAATACTaGCTTCTTCAATCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHLQIKY*LLQSAA
Trigger: TGCAGCAGATTGAAGAAGTCAGTATTTTATTTGCAG...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACCTAAGTATTTTGCAGTaGCCTCAGATATGTGAACTT +
Preference number: 4 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHLSILQ*PQICEL
Trigger: AAGTTCACATATCTGAGGCCACTGCAAAATACTTAG...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CCA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTCTAAGTATTTTGCAGTaGCCTCAGATATGTGAACTT +
Preference number: 4 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPLSILQ*PQICEL
Trigger: AAGTTCACATATCTGAGGCCACTGCAAAATACTTAG...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCATGTTGCTGTCTCCGCTaGAGTCGCAGCTCACCTCGG +
Preference number: 5 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPCCCLR*SRSSPR
Trigger: CCGAGGTGAGCTGCGACTCAAGCGGAGACAGCAACA...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CAA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTCTCATGCTCTGGATCTaGGTGCGGTGTAGGTCGGCC +
Preference number: 5 (lower is better)
Translates to: PRAMIPPVASAPDARPDPLMLWI*VRCRSA
Trigger: GGCCGACCTACACCGCACCAAGATCCAGAGCATGAG...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 90 bp GCCCAGCCCCCACGATGGTGGCAAGGGAGGACCTCATCCAGGAGCTaGGCTGGCAGAAGTTACAGTAGTGCACAACGGCCACCAGCACCG +
Preference number: 5 (lower is better)
Translates to: AQPPRWWQGRTSSRS*AGRSYSSAQRPPAP
Trigger: CGGTGCTGGTGGCCGTTGTGCACTACTGTAACTTCTGCCAGCTCAGCTCCTGGATGAGGTCCTCCCTTGCCACCATCGTGGGGGCTGGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 90 bp CATTCTGATGGACACTATGAGGGAAAGCACCTCCAGCAGCAGGTCTaGACCAAAGACGGCCAGGGCAGCCGGTGGGGGAGGGGTGGCGGT +
Preference number: 5 (lower is better)
Translates to: HSDGHYEGKHLQQQV*TKDGQGSRWGRGGG
Trigger: ACCGCCACCCCTCCCCCACCGGCTGCCCTGGCCGTCTTTGGTGCAGACCTGCTGCTGGAGGTGCTTTCCCTCATAGTGTCCATCAGAATG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTCCACCGTCCCTTCTCTaGCAGGATCTCACAGAGGGA +
Preference number: 5 (lower is better)
Translates to: PRAMIPPVASAPDARPDPPPSLL*QDLTEG
Trigger: TCCCTCTGTGAGATCCTGCAAGAGAAGGGACGGTGG...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTTGCAGCACTGAGCTGTaGCATGGGTTCCTCTGGGCA +
Preference number: 5 (lower is better)
Translates to: PRAMIPPVASAPDARPDPCSTEL*HGFLWA
Trigger: TGCCCAGAGGAACCCATGCAACAGCTCAGTGCTGCA...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 90 bp AAACCTGAAACTGCGCAGCCAGGGTCAGGGCGAACACCAGCAGGGTaGGAGCCAGCGAGGTCCACGCATAATGCCGGGCGTACAGCTTGG +
Preference number: 5 (lower is better)
Translates to: KPETAQPGSGRTPAG*EPARSTHNAGRTAW
Trigger: CCAAGCTGTACGCCCGGCATTATGCGTGGACCTCGCTGGCTCTCACCCTGCTGGTGTTCGCCCTGACCCTGGCTGCGCAGTTTCAGGTTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS CCA 90 bp TGTGGGAGACCGCCCAATGCTGCCGTCCACCTGGACTCGGATGTCTaGGGAGATGGACAGCTGGTGCTGGGGAACCACTCCATTGTCCGT +
Preference number: 5 (lower is better)
Translates to: CGRPPNAAVHLDSDV*GDGQLVLGNHSIVR
Trigger: ACGGACAATGGAGTGGTTCCCCAGCACCAGCTGTCCATCTCCCCAGACATCCGAGTCCAGGTGGACGGCAGCATTGGGCGGTCTCCCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAACTCATGCTCTGGATCTaGGTGCGGTGTAGGTCGGCC +
Preference number: 5 (lower is better)
Translates to: RAMIPPVASAPDARPDPELMLWI*VRCRSA
Trigger: GGCCGACCTACACCGCACCAAGATCCAGAGCATGAG...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 90 bp GGTGTAGGTCGGCCTCCACATCCCCATGGTAGTGCAGCCGGTAGCTaGCCTCGAACTCCCGGTTCAGGAACCAGACCAAGAGGAGCAGGA +
Preference number: 5 (lower is better)
Translates to: GVGRPPHPHGSAAGS*PRTPGSGTRPRGAG
Trigger: TCCTGCTCCTCTTGGTCTGGTTCCTGAACCGGGAGTTCGAGGTCAGCTACCGGCTGCACTACCATGGGGATGTGGAGGCCGACCTACACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 90 bp TCCGCAGTAGCCAGTCAGCCTGGTCTCTCATGCTCTGGATCTTGGTaGGGTGTAGGTCGGCCTCCACATCCCCATGGTAGTGCAGCCGGT +
Preference number: 5 (lower is better)
Translates to: SAVASQPGLSCSGSW*GVGRPPHPHGSAAG
Trigger: ACCGGCTGCACTACCATGGGGATGTGGAGGCCGACCTACACCGCACCAAGATCCAGAGCATGAGAGACCAGGCTGACTGGCTACTGCGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 90 bp ACCGCCCAATGCTGCCGTCCACCTGGACTCGGATGTCTGGGGAGATaGACAGCTGGTGCTGGGGAACCACTCCATTGTCCGTGCACTTTG +
Preference number: 5 (lower is better)
Translates to: TAQCCRPPGLGCLGR*TAGAGEPLHCPCTL
Trigger: CAAAGTGCACGGACAATGGAGTGGTTCCCCAGCACCAGCTGTCCATCTCCCCAGACATCCGAGTCCAGGTGGACGGCAGCATTGGGCGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 90 bp TTGGCAATCTCATCTGTGGGAGACCGCCCAATGCTGCCGTCCACCTaGACTCGGATGTCTGGGGAGATGGACAGCTGGTGCTGGGGAACC +
Preference number: 5 (lower is better)
Translates to: LAISSVGDRPMLPST*TRMSGEMDSWCWGT
Trigger: GGTTCCCCAGCACCAGCTGTCCATCTCCCCAGACATCCGAGTCCAGGTGGACGGCAGCATTGGGCGGTCTCCCACAGATGAGATTGCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCATGCTTAGGGTTGATCTaGACCCTCACGCTGTTGCTG +
Preference number: 5 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPCLGLI*TLTLLL
Trigger: CAGCAACAGCGTGAGGGTCAAGATCAACCCTAAGCA...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CAA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAATTCATGGAGTCGAATTaGGGGTCCCACCACCGGCTG +
Preference number: 5 (lower is better)
Translates to: RAMIPPVASAPDARPDPEFMESN*GSHHRL
Trigger: CAGCCGGTGGTGGGACCCCAAATTCGACTCCATGAA...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CAA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTGAGGTGGCATGCCTCTaGACGGAATTCTCACTCTCC +
Preference number: 5 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLEVACL*TEFSLS
Trigger: GGAGAGTGAGAATTCCGTCAAGAGGCATGCCACCTC...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCTGATCTTCTCACACTaGGTCTGCTCACACAGGCGG +
Preference number: 5 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLLIFSH*VCSHRR
Trigger: CCGCCTGTGTGAGCAGACCAAGTGTGAGAAGATCAG...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTTTCTGGGTTTTGGAGTaGGGTCCTCCAGAAGCCTTG +
Preference number: 5 (lower is better)
Translates to: PRAMIPPVASAPDARPDPFWVLE*GPPEAL
Trigger: CAAGGCTTCTGGAGGACCCAACTCCAAAACCCAGAA...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCCCACCGTCCCTTCTCTaGCAGGATCTCACAGAGGGA +
Preference number: 5 (lower is better)
Translates to: HQWPQPQTQGQTLKALESPPSLL*QDLTEG
Trigger: TCCCTCTGTGAGATCCTGCAAGAGAAGGGACGGTGG...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCAACGCGCATCATCTCCTaGGCGAACTCGAAGAGGATA +
Preference number: 5 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPTRIIS*ANSKRI
Trigger: TATCCTCTTCGAGTTCGCCAAGGAGATGATGCGCGT...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTACGGAAGGCACCAAGTaGGCAATCTCATCTGTGGGA +
Preference number: 5 (lower is better)
Translates to: PRAMIPPVASAPDARPDPTEGTK*AISSVG
Trigger: TCCCACAGATGAGATTGCCAACTTGGTGCCTTCCGT...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTAACCTTTCCTCTGCTTaGACTGGCTCTCTCCAGGAC +
Preference number: 5 (lower is better)
Translates to: PRAMIPPVASAPDARPDPNLSSA*TGSLQD
Trigger: GTCCTGGAGAGAGCCAGTCAAAGCAGAGGAAAGGTT...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 90 bp CGCCGGAGTGGCCGTGAGAGTATGATTGGAGCTGTCAACACGTCCTaGCAGAGGTGTCCAAACCTGAAACTGCGCAGCCAGGGTCAGGGC +
Preference number: 5 (lower is better)
Translates to: RRSGRESMIGAVNTS*QRCPNLKLRSQGQG
Trigger: GCCCTGACCCTGGCTGCGCAGTTTCAGGTTTGGACACCTCTGTCAGGACGTGTTGACAGCTCCAATCATACTCTCACGGCCACTCCGGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS GCA 90 bp AGGGCTGACTGGTCCAAGCTCACCCCTGCCCACCGTCCCTTCTCTTaGAGGATCTCACAGAGGGAGGTCTGGCTGTTAGTGAGCTTCTCC +
Preference number: 5 (lower is better)
Translates to: RADWSKLTPAHRPFS*RISQREVWLLVSFS
Trigger: GGAGAAGCTCACTAACAGCCAGACCTCCCTCTGTGAGATCCTGCAAGAGAAGGGACGGTGGGCAGGGGTGAGCTTGGACCAGTCAGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 90 bp CGGAAGGCACCAAGTTGGCAATCTCATCTGTGGGAGACCGCCCAATaGTGCCGTCCACCTGGACTCGGATGTCTGGGGAGATGGACAGCT +
Preference number: 5 (lower is better)
Translates to: RKAPSWQSHLWETAQ*CRPPGLGCLGRWTA
Trigger: AGCTGTCCATCTCCCCAGACATCCGAGTCCAGGTGGACGGCAGCATTGGGCGGTCTCCCACAGATGAGATTGCCAACTTGGTGCCTTCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 90 bp TGTTCCGCAGTAGCCAGTCAGCCTGGTCTCTCATGCTCTGGATCTTaGTGCGGTGTAGGTCGGCCTCCACATCCCCATGGTAGTGCAGCC +
Preference number: 5 (lower is better)
Translates to: CSAVASQPGLSCSGS*CGVGRPPHPHGSAA
Trigger: GGCTGCACTACCATGGGGATGTGGAGGCCGACCTACACCGCACCAAGATCCAGAGCATGAGAGACCAGGCTGACTGGCTACTGCGGAACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCGACAGCTGCTTAGGGTaGATCTTGACCCTCACGCTG +
Preference number: 5 (lower is better)
Translates to: HQWPQPQTQGQTLKALESDSCLG*ILTLTL
Trigger: CAGCGTGAGGGTCAAGATCAACCCTAAGCAGCTGTC...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CAA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGAGGTGGCATGCCTCTaGACGGAATTCTCACTCTCC +
Preference number: 5 (lower is better)
Translates to: RAMIPPVASAPDARPDPEEVACL*TEFSLS
Trigger: GGAGAGTGAGAATTCCGTCAAGAGGCATGCCACCTC...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGAAGAGACACCAAGATaGCCCCAATGCAGTGGCGAG +
Preference number: 5 (lower is better)
Translates to: RAMIPPVASAPDARPDPEEETPR*PQCSGE
Trigger: CTCGCCACTGCATTGGGGCAATCTTGGTGTCTCTTC...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTAACCTTTCCTCTGCTTaGACTGGCTCTCTCCAGGAC +
Preference number: 5 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLNLSSA*TGSLQD
Trigger: GTCCTGGAGAGAGCCAGTCAAAGCAGAGGAAAGGTT...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 90 bp GAAATAGATGCTCCAGAGAAGGCAGGCGAAGCCCACATAAAAGAGTaGGTACCGGAAGCGGCGCTGGGTCTGCGGAAAGCAGCGCTCCAG +
Preference number: 5 (lower is better)
Translates to: EIDAPEKAGEAHIKE*VPEAALGLRKAALQ
Trigger: CTGGAGCGCTGCTTTCCGCAGACCCAGCGCCGCTTCCGGTACGCACTCTTTTATGTGGGCTTCGCCTGCCTTCTCTGGAGCATCTATTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS GCA 90 bp AGGATAAGCTCCTTGCCTATGAGGCTGGCCGGCCTCCTGCCGTCCTaGAGCACTGAGCTGTTGCATGGGTTCCTCTGGGCACTGAAATTC +
Preference number: 5 (lower is better)
Translates to: RISSLPMRLAGLLPS*STELLHGFLWALKF
Trigger: GAATTTCAGTGCCCAGAGGAACCCATGCAACAGCTCAGTGCTGCAGGACGGCAGGAGGCCGGCCAGCCTCATAGGCAAGGAGCTTATCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 90 bp AAGGCACCAAGTTGGCAATCTCATCTGTGGGAGACCGCCCAATGCTaGCGTCCACCTGGACTCGGATGTCTGGGGAGATGGACAGCTGGT +
Preference number: 5 (lower is better)
Translates to: KAPSWQSHLWETAQC*RPPGLGCLGRWTAG
Trigger: ACCAGCTGTCCATCTCCCCAGACATCCGAGTCCAGGTGGACGGCAGCATTGGGCGGTCTCCCACAGATGAGATTGCCAACTTGGTGCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 90 bp GTTTTCTCACGGATGTTCTTGAACCTGAGCGGGAGGAGGGCTGACTaGTCCAAGCTCACCCCTGCCCACCGTCCCTTCTCTTGCAGGATC +
Preference number: 5 (lower is better)
Translates to: VFSRMFLNLSGRRAD*SKLTPAHRPFSCRI
Trigger: GATCCTGCAAGAGAAGGGACGGTGGGCAGGGGTGAGCTTGGACCAGTCAGCCCTCCTCCCGCTCAGGTTCAAGAACATCCGTGAGAAAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCATGGATTGTCCCACCTaGAGAAAGGTGCTCCTGGAC +
Preference number: 5 (lower is better)
Translates to: HQWPQPQTQGQTLKALESMDCPT*RKVLLD
Trigger: GTCCAGGAGCACCTTTCTCAAGGTGGGACAATCCAT...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAATGGATTGTCCCACCTaGAGAAAGGTGCTCCTGGAC +
Preference number: 5 (lower is better)
Translates to: RAMIPPVASAPDARPDPEMDCPT*RKVLLD
Trigger: GTCCAGGAGCACCTTTCTCAAGGTGGGACAATCCAT...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTGCCGTGCATAATGGATaGTCCCACCTTGAGAAAGGT +
Preference number: 5 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLAVHNG*SHLEKG
Trigger: ACCTTTCTCAAGGTGGGACAATCCATTATGCACGGC...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTGTCTTGACAGCCATTTaGCACAGTTCCTCCTTCTGC +
Preference number: 5 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLVLTAI*HSSSFC
Trigger: GCAGAAGGAGGAACTGTGCAAAATGGCTGTCAAGAC...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCTTCTGGGTTTTGGAGTaGGGTCCTCCAGAAGCCTTG +
Preference number: 5 (lower is better)
Translates to: HQWPQPQTQGQTLKALESFWVLE*GPPEAL
Trigger: CAAGGCTTCTGGAGGACCCAACTCCAAAACCCAGAA...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAACGCGCATCATCTCCTaGGCGAACTCGAAGAGGATA +
Preference number: 5 (lower is better)
Translates to: RAMIPPVASAPDARPDPETRIIS*ANSKRI
Trigger: TATCCTCTTCGAGTTCGCCAAGGAGATGATGCGCGT...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCATTTGAGACATTGAGCTaGCTGAGTTCACTGGCCTCT +
Preference number: 5 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPFETLS*LSSLAS
Trigger: AGAGGCCAGTGAACTCAGCAAGCTCAATGTCTCAAA...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 90 bp CTGCTTAGGGTTGATCTTGACCCTCACGCTGTTGCTGTCTCCGCTTaGGTCGCAGCTCACCTCGGTGCTATGGTGATGCAGCAGCTGCTG +
Preference number: 5 (lower is better)
Translates to: LLRVDLDPHAVAVSA*VAAHLGAMVMQQLL
Trigger: CAGCAGCTGCTGCATCACCATAGCACCGAGGTGAGCTGCGACTCAAGCGGAGACAGCAACAGCGTGAGGGTCAAGATCAACCCTAAGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS TCA 90 bp ATCAGTTTTCTCACGGATGTTCTTGAACCTGAGCGGGAGGAGGGCTaGCTGGTCCAAGCTCACCCCTGCCCACCGTCCCTTCTCTTGCAG +
Preference number: 5 (lower is better)
Translates to: ISFLTDVLEPEREEG*LVQAHPCPPSLLLQ
Trigger: CTGCAAGAGAAGGGACGGTGGGCAGGGGTGAGCTTGGACCAGTCAGCCCTCCTCCCGCTCAGGTTCAAGAACATCCGTGAGAAAACTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 90 bp GGCAGAACTGCTCGATGGCTTTTATCATGCCTAAGCCCATTTCAATaGAGCAGTAGGCATGGTCTGCCCGGGGCTCCGGACACCCTGCCA +
Preference number: 5 (lower is better)
Translates to: GRTARWLLSCLSPFQ*SSRHGLPGAPDTLP
Trigger: TGGCAGGGTGTCCGGAGCCCCGGGCAGACCATGCCTACTGCTGCATTGAAATGGGCTTAGGCATGATAAAAGCCATCGAGCAGTTCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 90 bp GTGAATAGACAGCCAGGGCAGGAAGAGACACCAAGATTGCCCCAATaGAGTGGCGAGGGAGCCAGCCAGCGATCCATTCCAGCAACCACT +
Preference number: 5 (lower is better)
Translates to: VNRQPGQEETPRLPQ*SGEGASQRSIPATT
Trigger: AGTGGTTGCTGGAATGGATCGCTGGCTGGCTCCCTCGCCACTGCATTGGGGCAATCTTGGTGTCTCTTCCTGCCCTGGCTGTCTATTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 90 bp GGCCTCCTGCCGTCCTGCAGCACTGAGCTGTTGCATGGGTTCCTCTaGGCACTGAAATTCTGTGCTGAGTCCAAGGGGGACATCACAATG +
Preference number: 5 (lower is better)
Translates to: GLLPSCSTELLHGFL*ALKFCAESKGDITM
Trigger: CATTGTGATGTCCCCCTTGGACTCAGCACAGAATTTCAGTGCCCAGAGGAACCCATGCAACAGCTCAGTGCTGCAGGACGGCAGGAGGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCTTCATGGAGTCGAATTaGGGGTCCCACCACCGGCTG +
Preference number: 5 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCFMESN*GSHHRL
Trigger: CAGCCGGTGGTGGGACCCCAAATTCGACTCCATGAA...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CAA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGCATGCGCAGATTTGTaGGCGCTCATCTTGGTGAAA +
Preference number: 5 (lower is better)
Translates to: RAMIPPVASAPDARPDPEACADL*ALILVK
Trigger: TTTCACCAAGATGAGCGCCAACAAATCTGCGCATGC...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCGCATGCGCAGATTTGTaGGCGCTCATCTTGGTGAAA +
Preference number: 5 (lower is better)
Translates to: HQWPQPQTQGQTLKALESACADL*ALILVK
Trigger: TTTCACCAAGATGAGCGCCAACAAATCTGCGCATGC...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTGCACCAGCTTCAGATTaGGGAGCAAATGTGATTCCA +
Preference number: 5 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLAPASD*GANVIP
Trigger: TGGAATCACATTTGCTCCCAAATCTGAAGCTGGTGC...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGGTCTTGACAGCCATTTaGCACAGTTCCTCCTTCTGC +
Preference number: 5 (lower is better)
Translates to: GQTLKALESLHAADWIPWVLTAI*HSSSFC
Trigger: GCAGAAGGAGGAACTGTGCAAAATGGCTGTCAAGAC...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAAGTCCATTCTGGGTTTaGGAGTTGGGTCCTCCAGAA +
Preference number: 5 (lower is better)
Translates to: RAMIPPVASAPDARPDPESPFWV*ELGPPE
Trigger: TTCTGGAGGACCCAACTCCAAAACCCAGAATGGACT...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCAGTCCATTCTGGGTTTaGGAGTTGGGTCCTCCAGAA +
Preference number: 5 (lower is better)
Translates to: HQWPQPQTQGQTLKALESSPFWV*ELGPPE
Trigger: TTCTGGAGGACCCAACTCCAAAACCCAGAATGGACT...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp GGCCAGACCCTGAAGGCACTTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGGTGGCCCCGATGGTCTaGATCTTCTCGATGCTATTA +
Preference number: 5 (lower is better)
Translates to: GQTLKALESLHAADWIPWVAPMV*IFSMLL
Trigger: TAATAGCATCGAGAAGATCAAGACCATCGGGGCCAC...CCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAAGTGCCTTCAGGGTCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTACACTCTTTGAGACATaGAGCTTGCTGAGTTCACTG +
Preference number: 5 (lower is better)
Translates to: PRAMIPPVASAPDARPDPTLFET*SLLSSL
Trigger: CAGTGAACTCAGCAAGCTCAATGTCTCAAAGAGTGT...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCAACACTCTTTGAGACATaGAGCTTGCTGAGTTCACTG +
Preference number: 5 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPTLFET*SLLSSL
Trigger: CAGTGAACTCAGCAAGCTCAATGTCTCAAAGAGTGT...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 90 bp TGTCCGAATACTGAACGGAAGGCACCAAGTTGGCAATCTCATCTGTaGGAGACCGCCCAATGCTGCCGTCCACCTGGACTCGGATGTCTG +
Preference number: 5 (lower is better)
Translates to: CPNTERKAPSWQSHL*ETAQCCRPPGLGCL
Trigger: CAGACATCCGAGTCCAGGTGGACGGCAGCATTGGGCGGTCTCCCACAGATGAGATTGCCAACTTGGTGCCTTCCGTTCAGTATTCGGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 90 bp ATCCCAGGGAAGCCTTGTCCGAATACTGAACGGAAGGCACCAAGTTaGCAATCTCATCTGTGGGAGACCGCCCAATGCTGCCGTCCACCT +
Preference number: 5 (lower is better)
Translates to: IPGKPCPNTERKAPS*QSHLWETAQCCRPP
Trigger: AGGTGGACGGCAGCATTGGGCGGTCTCCCACAGATGAGATTGCCAACTTGGTGCCTTCCGTTCAGTATTCGGACAAGGCTTCCCTGGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCATCTACTTCCAGATCTTaGCCGTGCATAATGGATTGT +
Preference number: 5 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPSTSRS*PCIMDC
Trigger: ACAATCCATTATGCACGGCAAAGATCTGGAAGTAGA...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCCTGATCTTCTCACACTaGGTCTGCTCACACAGGCGG +
Preference number: 5 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCLIFSH*VCSHRR
Trigger: CCGCCTGTGTGAGCAGACCAAGTGTGAGAAGATCAG...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTAGGTTATCAAAGGTTTaGACAGTCTGCGCCAAATCA +
Preference number: 5 (lower is better)
Translates to: PRAMIPPVASAPDARPDPRLSKV*TVCAKS
Trigger: TGATTTGGCGCAGACTGTCAAAACCTTTGATAACCT...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCGCACCAGCTTCAGATTaGGGAGCAAATGTGATTCCA +
Preference number: 5 (lower is better)
Translates to: HQWPQPQTQGQTLKALESAPASD*GANVIP
Trigger: TGGAATCACATTTGCTCCCAAATCTGAAGCTGGTGC...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTCCAATCAGGCTGTCTTCTTaGATGACATCAACAAAGTGG +
Preference number: 5 (lower is better)
Translates to: NPSTLLTGSPGWAGGRLPIRLSS*MTSTKW
Trigger: CCACTTTGTTGATGTCATCAAAGAAGACAGCCTGAT...TGGAAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCGAAGAGACACCAAGATaGCCCCAATGCAGTGGCGAG +
Preference number: 5 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCEETPR*PQCSGE
Trigger: CTCGCCACTGCATTGGGGCAATCTTGGTGTCTCTTC...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCTTTGAGACATTGAGCTaGCTGAGTTCACTGGCCTCT +
Preference number: 5 (lower is better)
Translates to: HQWPQPQTQGQTLKALESFETLS*LSSLAS
Trigger: AGAGGCCAGTGAACTCAGCAAGCTCAATGTCTCAAA...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAATTTGAGACATTGAGCTaGCTGAGTTCACTGGCCTCT +
Preference number: 5 (lower is better)
Translates to: RAMIPPVASAPDARPDPEFETLS*LSSLAS
Trigger: AGAGGCCAGTGAACTCAGCAAGCTCAATGTCTCAAA...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 90 bp CCGGTGGGGGAGGGGTGGCGGTGGCTCCATACTTTAGGAAGCAGGTaGTGGAGAGAATCAAGAACACGGTGGTTGACAGAAACACATCCA +
Preference number: 5 (lower is better)
Translates to: PVGEGWRWLHTLGSR*WRESRTRWLTETHP
Trigger: TGGATGTGTTTCTGTCAACCACCGTGTTCTTGATTCTCTCCATCACCTGCTTCCTAAAGTATGGAGCCACCGCCACCCCTCCCCCACCGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 90 bp GAGATGCTGTACTTGCAGTGCTTCGGGTGGGTGTTGGAGGACAGCTaGTTAGGGTTGATCTTGACCCTCACGCTGTTGCTGTCTCCGCTT +
Preference number: 5 (lower is better)
Translates to: EMLYLQCFGWVLEDS*LGLILTLTLLLSPL
Trigger: AAGCGGAGACAGCAACAGCGTGAGGGTCAAGATCAACCCTAAGCAGCTGTCCTCCAACACCCACCCGAAGCACTGCAAGTACAGCATCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS GCA 90 bp CAGGATCTCACAGAGGGAGGTCTGGCTGTTAGTGAGCTTCTCCTCTaGAGGAGGGCTCAGAAGTCCATTCTGGGTTTTGGAGTTGGGTCC +
Preference number: 5 (lower is better)
Translates to: QDLTEGGLAVSELLL*RRAQKSILGFGVGS
Trigger: GGACCCAACTCCAAAACCCAGAATGGACTTCTGAGCCCTCCTGCAGAGGAGAAGCTCACTAACAGCCAGACCTCCCTCTGTGAGATCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGTGCTTCGGGTGGGTGTaGGAGGACAGCTGCTTAGGG +
Preference number: 5 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQCFGWV*EDSCLG
Trigger: CCCTAAGCAGCTGTCCTCCAACACCCACCCGAAGCA...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CAA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCGAGGAGATGCTGTACTaGCAGTGCTTCGGGTGGGTG +
Preference number: 5 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAEEMLY*QCFGWV
Trigger: CACCCACCCGAAGCACTGCAAGTACAGCATCTCCTC...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CAA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCAAGGCATGCGCAGATTaGTTGGCGCTCATCTTGGTG +
Preference number: 5 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCKACAD*LALILV
Trigger: CACCAAGATGAGCGCCAACAAATCTGCGCATGCCTT...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCCCACCGTCCCTTCTCTaGCAGGATCTCACAGAGGGA +
Preference number: 5 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAPPSLL*QDLTEG
Trigger: TCCCTCTGTGAGATCCTGCAAGAGAAGGGACGGTGG...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCTCAAGAACACGGTGGTaGACAGAAACACATCCAGAA +
Preference number: 5 (lower is better)
Translates to: HQWPQPQTQGQTLKALESSRTRW*TETHPE
Trigger: TTCTGGATGTGTTTCTGTCAACCACCGTGTTCTTGA...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACCTCATGCTCTGGATCTaGGTGCGGTGTAGGTCGGCC +
Preference number: 5 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHLMLWI*VRCRSA
Trigger: GGCCGACCTACACCGCACCAAGATCCAGAGCATGAG...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCACGCGCATCATCTCCTaGGCGAACTCGAAGAGGATA +
Preference number: 5 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCTRIIS*ANSKRI
Trigger: TATCCTCTTCGAGTTCGCCAAGGAGATGATGCGCGT...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CCCAGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTACCCTGAGCTTGAAGTaGAACCATAACATATTGTTG +
Preference number: 5 (lower is better)
Translates to: PRAMIPPVASAPDARPDPTLSLK*NHNILL
Trigger: CAACAATATGTTATGGTTCAACTTCAAGCTCAGGGT...AGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAACACTCTTTGAGACATaGAGCTTGCTGAGTTCACTG +
Preference number: 5 (lower is better)
Translates to: RAMIPPVASAPDARPDPETLFET*SLLSSL
Trigger: CAGTGAACTCAGCAAGCTCAATGTCTCAAAGAGTGT...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 90 bp ACTTGGTCTGCTCACACAGGCGGTCAAAGCGACCGAACAGGTCATTaGGTAGGCCTACCAAGGCATGCGCAGATTTGTTGGCGCTCATCT +
Preference number: 5 (lower is better)
Translates to: TWSAHTGGQSDRTGH*VGLPRHAQICWRSS
Trigger: AGATGAGCGCCAACAAATCTGCGCATGCCTTGGTAGGCCTACTCAATGACCTGTTCGGTCGCTTTGACCGCCTGTGTGAGCAGACCAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 90 bp GAAAGCAGGGCCTCTGCACAGCTGCAGTGGGACTCCTTGGCTCTCTaGCCCGATATCAGGTATGTCTTCAAACCTTTCAACTGGTCAGCC +
Preference number: 5 (lower is better)
Translates to: ESRASAQLQWDSLAL*PDIRYVFKPFNWSA
Trigger: GGCTGACCAGTTGAAAGGTTTGAAGACATACCTGATATCGGGTCAGAGAGCCAAGGAGTCCCACTGCAGCTGTGCAGAGGCCCTGCTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 90 bp GCCTGTGTGCTATCATCAGATCCCAGGGAAGCCTTGTCCGAATACTaGACGGAAGGCACCAAGTTGGCAATCTCATCTGTGGGAGACCGC +
Preference number: 5 (lower is better)
Translates to: ACVLSSDPREALSEY*TEGTKLAISSVGDR
Trigger: GCGGTCTCCCACAGATGAGATTGCCAACTTGGTGCCTTCCGTTCAGTATTCGGACAAGGCTTCCCTGGGATCTGATGATAGCACACAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGTTGCTGTCTCCGCTaGAGTCGCAGCTCACCTCGG +
Preference number: 5 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPCCCLR*SRSSPR
Trigger: CCGAGGTGAGCTGCGACTCAAGCGGAGACAGCAACA...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CAA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGCTTCGGGTGGGTGTaGGAGGACAGCTGCTTAGGG +
Preference number: 5 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPCFGWV*EDSCLG
Trigger: CCCTAAGCAGCTGTCCTCCAACACCCACCCGAAGCA...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CAA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACGAGGAGATGCTGTACTaGCAGTGCTTCGGGTGGGTG +
Preference number: 5 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHEEMLY*QCFGWV
Trigger: CACCCACCCGAAGCACTGCAAGTACAGCATCTCCTC...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CAA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCGAGGTGGCATGCCTCTaGACGGAATTCTCACTCTCC +
Preference number: 5 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAEVACL*TEFSLS
Trigger: GGAGAGTGAGAATTCCGTCAAGAGGCATGCCACCTC...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCGCATGCGCAGATTTGTaGGCGCTCATCTTGGTGAAA +
Preference number: 5 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCACADL*ALILVK
Trigger: TTTCACCAAGATGAGCGCCAACAAATCTGCGCATGC...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCCTGATCTTCTCACACTaGGTCTGCTCACACAGGCGG +
Preference number: 5 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSLIFSH*VCSHRR
Trigger: CCGCCTGTGTGAGCAGACCAAGTGTGAGAAGATCAG...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACTGCAGCACTGAGCTGTaGCATGGGTTCCTCTGGGCA +
Preference number: 5 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHCSTEL*HGFLWA
Trigger: TGCCCAGAGGAACCCATGCAACAGCTCAGTGCTGCA...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCGTGGCCCCGATGGTCTaGATCTTCTCGATGCTATTA +
Preference number: 5 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCVAPMV*IFSMLL
Trigger: TAATAGCATCGAGAAGATCAAGACCATCGGGGCCAC...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTACCCTGAGCTTGAAGTaGAACCATAACATATTGTTG +
Preference number: 5 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLTLSLK*NHNILL
Trigger: CAACAATATGTTATGGTTCAACTTCAAGCTCAGGGT...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAGGCACTTGAATCCTCCTTTTCTATGGCTTaGCCAAATGGAAACCTTTCC +
Preference number: 5 (lower is better)
Translates to: HQWPQPQTQGQTLKALESSFSMA*PNGNLS
Trigger: GGAAAGGTTTCCATTTGGCAAAGCCATAGAAAAGGA...GGATTCAAGTGCCTTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 90 bp AGAAGCTTCCTACTTGAGATAAGCAAGTGTCCGCCGGAGTGGCCGTaGGAGTATGATTGGAGCTGTCAACACGTCCTGACAGAGGTGTCC +
Preference number: 5 (lower is better)
Translates to: RSFLLEISKCPPEWP*EYDWSCQHVLTEVS
Trigger: GGACACCTCTGTCAGGACGTGTTGACAGCTCCAATCATACTCTCACGGCCACTCCGGCGGACACTTGCTTATCTCAAGTAGGAAGCTTCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS TCA 90 bp GAGTTGGGTCCTCCAGAAGCCTTGGTGCTGGTCTTAGGCTCGTCTTaGCAGCCATTTTGCACAGTTCCTCCTTCTGCACCAGCTTCAGAT +
Preference number: 5 (lower is better)
Translates to: ELGPPEALVLVLGSS*QPFCTVPPSAPASD
Trigger: ATCTGAAGCTGGTGCAGAAGGAGGAACTGTGCAAAATGGCTGTCAAGACGAGCCTAAGACCAGCACCAAGGCTTCTGGAGGACCCAACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 90 bp CTGTTAGTGAGCTTCTCCTCTGCAGGAGGGCTCAGAAGTCCATTCTaGGTTTTGGAGTTGGGTCCTCCAGAAGCCTTGGTGCTGGTCTTA +
Preference number: 5 (lower is better)
Translates to: LLVSFSSAGGLRSPF*VLELGPPEALVLVL
Trigger: TAAGACCAGCACCAAGGCTTCTGGAGGACCCAACTCCAAAACCCAGAATGGACTTCTGAGCCCTCCTGCAGAGGAGAAGCTCACTAACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 90 bp GATGGACAGCTGGTGCTGGGGAACCACTCCATTGTCCGTGCACTTTaGGTAAAGGTAGGTCTTCATCTGCCCTTTCCCCTTGACATTCAC +
Preference number: 5 (lower is better)
Translates to: DGQLVLGNHSIVRAL*VKVGLHLPFPLDIH
Trigger: GTGAATGTCAAGGGGAAAGGGCAGATGAAGACCTACCTTTACCCAAAGTGCACGGACAATGGAGTGGTTCCCCAGCACCAGCTGTCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTGCTTAGGGTTGATCTaGACCCTCACGCTGTTGCTG +
Preference number: 5 (lower is better)
Translates to: HVTPHLGTETEVLDSTTACLGLI*TLTLLL
Trigger: CAGCAACAGCGTGAGGGTCAAGATCAACCCTAAGCA...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CAA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCAAGGCATGCGCAGATTaGTTGGCGCTCATCTTGGTG +
Preference number: 5 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSKACAD*LALILV
Trigger: CACCAAGATGAGCGCCAACAAATCTGCGCATGCCTT...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCAAGGCATGCGCAGATTaGTTGGCGCTCATCTTGGTG +
Preference number: 5 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAKACAD*LALILV
Trigger: CACCAAGATGAGCGCCAACAAATCTGCGCATGCCTT...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGGAAGAGACACCAAGATaGCCCCAATGCAGTGGCGAG +
Preference number: 5 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQEETPR*PQCSGE
Trigger: CTCGCCACTGCATTGGGGCAATCTTGGTGTCTCTTC...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGCAGCACTGAGCTGTaGCATGGGTTCCTCTGGGCA +
Preference number: 5 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPCSTEL*HGFLWA
Trigger: TGCCCAGAGGAACCCATGCAACAGCTCAGTGCTGCA...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAAACCATAACATATTGTaGTTGAAGTCATCCACCACG +
Preference number: 5 (lower is better)
Translates to: RAMIPPVASAPDARPDPENHNIL*LKSSTT
Trigger: CGTGGTGGATGACTTCAACAACAATATGTTATGGTT...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp TTGAATCCCTCCACGCTGCTGACTGGATCCCCTGGCTGGGCTGGGGGCAGGCTTTTGAACCATAACATATaGTTGTTGAAGTCATCCACC +
Preference number: 5 (lower is better)
Translates to: LNPSTLLTGSPGWAGGRLLNHNI*LLKSST
Trigger: GGTGGATGACTTCAACAACAATATGTTATGGTTCAA...AAGCCTGCCCCCAGCCCAGCCAGGGGATCCAGTCAGCAGCGTGGAGGGATTCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AGGGCCATGATTCCACCAGTGGCCTCAGCCCCAGACGCAAGGCCAGACCCTGAAACCCTGAGCTTGAAGTaGAACCATAACATATTGTTG +
Preference number: 5 (lower is better)
Translates to: RAMIPPVASAPDARPDPETLSLK*NHNILL
Trigger: CAACAATATGTTATGGTTCAACTTCAAGCTCAGGGT...TTCAGGGTCTGGCCTTGCGTCTGGGGCTGAGGCCACTGGTGGAATCATGGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCCATTGTCCGTGCACTTaGGGTAAAGGTAGGTCTTCA +
Preference number: 5 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCHCPCT*GKGRSS
Trigger: TGAAGACCTACCTTTACCCAAAGTGCACGGACAATG...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCAACCTTTCCTCTGCTTaGACTGGCTCTCTCCAGGAC +
Preference number: 5 (lower is better)
Translates to: HVTPHLGTETEVLDSTTANLSSA*TGSLQD
Trigger: GTCCTGGAGAGAGCCAGTCAAAGCAGAGGAAAGGTT...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 90 bp CGGTCAAAGCGACCGAACAGGTCATTGAGTAGGCCTACCAAGGCATaGGCAGATTTGTTGGCGCTCATCTTGGTGAAACCCACAATGTCT +
Preference number: 5 (lower is better)
Translates to: RSKRPNRSLSRPTKA*ADLLALILVKPTMS
Trigger: AGACATTGTGGGTTTCACCAAGATGAGCGCCAACAAATCTGCGCATGCCTTGGTAGGCCTACTCAATGACCTGTTCGGTCGCTTTGACCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 90 bp CCACAAGAAGGGCAAGTCTTAAGGTTATCAAAGGTTTTGACAGTCTaGGCCAAATCACTGACACTCCCTGGCGATGCTGTCCCCTGTCCC +
Preference number: 5 (lower is better)
Translates to: PQEGQVLRLSKVLTV*AKSLTLPGDAVPCP
Trigger: GGGACAGGGGACAGCATCGCCAGGGAGTGTCAGTGATTTGGCGCAGACTGTCAAAACCTTTGATAACCTTAAGACTTGCCCTTCTTGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACATGGATTGTCCCACCTaGAGAAAGGTGCTCCTGGAC +
Preference number: 5 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHMDCPT*RKVLLD
Trigger: GTCCAGGAGCACCTTTCTCAAGGTGGGACAATCCAT...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCGCCGTGCATAATGGATaGTCCCACCTTGAGAAAGGT +
Preference number: 5 (lower is better)
Translates to: HVTPHLGTETEVLDSTTAAVHNG*SHLEKG
Trigger: ACCTTTCTCAAGGTGGGACAATCCATTATGCACGGC...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACTTCTGGGTTTTGGAGTaGGGTCCTCCAGAAGCCTTG +
Preference number: 5 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHFWVLE*GPPEAL
Trigger: CAAGGCTTCTGGAGGACCCAACTCCAAAACCCAGAA...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGACGGAAGGCACCAAGTaGGCAATCTCATCTGTGGGA +
Preference number: 5 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSTEGTK*AISSVG
Trigger: TCCCACAGATGAGATTGCCAACTTGGTGCCTTCCGT...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 90 bp CCGTGCACTTTGGGTAAAGGTAGGTCTTCATCTGCCCTTTCCCCTTaGCATTCACGGTCCCTCGGTAGTCAAAGTCATAACCCATCTTGC +
Preference number: 5 (lower is better)
Translates to: PCTLGKGRSSSALSP*HSRSLGSQSHNPSC
Trigger: GCAAGATGGGTTATGACTTTGACTACCGAGGGACCGTGAATGTCAAGGGGAAAGGGCAGATGAAGACCTACCTTTACCCAAAGTGCACGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGTGCCGGGCGTACAGCTaGGTGAAAGTAAACAGGAAA +
Preference number: 5 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSCRAYS*VKVNRK
Trigger: TTTCCTGTTTACTTTCACCAAGCTGTACGCCCGGCA...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CAA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACTGCCGGGCGTACAGCTaGGTGAAAGTAAACAGGAAA +
Preference number: 5 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHCRAYS*VKVNRK
Trigger: TTTCCTGTTTACTTTCACCAAGCTGTACGCCCGGCA...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS-3UTR CAA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACGCCGTGCATAATGGATaGTCCCACCTTGAGAAAGGT +
Preference number: 5 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHAVHNG*SHLEKG
Trigger: ACCTTTCTCAAGGTGGGACAATCCATTATGCACGGC...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCTCTACTTCCAGATCTTaGCCGTGCATAATGGATTGT +
Preference number: 5 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCSTSRS*PCIMDC
Trigger: ACAATCCATTATGCACGGCAAAGATCTGGAAGTAGA...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCTGTCGTCTAAGTATTTaGCAGTGGCCTCAGATATGT +
Preference number: 5 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCCRLSI*QWPQIC
Trigger: ACATATCTGAGGCCACTGCAAAATACTTAGACGACA...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp ACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGGCGCTGCATCAGGCTGTCTTCTTaGATGACATCAACAAAGTGG +
Preference number: 5 (lower is better)
Translates to: TDVTVFGHAEHLGSSRRCIRLSS*MTSTKW
Trigger: CCACTTTGTTGATGTCATCAAAGAAGACAGCCTGAT...GCAGCGCCGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACGTGGCCCCGATGGTCTaGATCTTCTCGATGCTATTA +
Preference number: 5 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHVAPMV*IFSMLL
Trigger: TAATAGCATCGAGAAGATCAAGACCATCGGGGCCAC...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCCATTGTCCGTGCACTTaGGGTAAAGGTAGGTCTTCA +
Preference number: 5 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSHCPCT*GKGRSS
Trigger: TGAAGACCTACCTTTACCCAAAGTGCACGGACAATG...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTACGGAAGGCACCAAGTaGGCAATCTCATCTGTGGGA +
Preference number: 5 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPTEGTK*AISSVG
Trigger: TCCCACAGATGAGATTGCCAACTTGGTGCCTTCCGT...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 90 bp AAAAGCCCACACACACCACCAGGAAGCACAGAGCTGGGACCACCATaGCAATCACTTTGGATTTCATGTGGACAGCGAAATAGATGCTCC +
Preference number: 5 (lower is better)
Translates to: KSPHTPPGSTELGPP*QSLWISCGQRNRCS
Trigger: GGAGCATCTATTTCGCTGTCCACATGAAATCCAAAGTGATTGTCATGGTGGTCCCAGCTCTGTGCTTCCTGGTGGTGTGTGTGGGCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS TCA 90 bp AGGACTTCTTCTTCCTGTTCTTGGGACTGGAGGTGGCATGCCTCTTaGCGGAATTCTCACTCTCCTCGTCCCCTTGTTTCATTAAGTCGT +
Preference number: 5 (lower is better)
Translates to: RTSSSCSWDWRWHAS*RNSHSPRPLVSLSR
Trigger: ACGACTTAATGAAACAAGGGGACGAGGAGAGTGAGAATTCCGTCAAGAGGCATGCCACCTCCAGTCCCAAGAACAGGAAGAAGAAGTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 90 bp TGTATGGAGGACTTCTTCTTCCTGTTCTTGGGACTGGAGGTGGCATaGCTCTTGACGGAATTCTCACTCTCCTCGTCCCCTTGTTTCATT +
Preference number: 5 (lower is better)
Translates to: CMEDFFFLFLGLEVA*LLTEFSLSSSPCFI
Trigger: AATGAAACAAGGGGACGAGGAGAGTGAGAATTCCGTCAAGAGGCATGCCACCTCCAGTCCCAAGAACAGGAAGAAGAAGTCCTCCATACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACGCACCAGCTTCAGATTaGGGAGCAAATGTGATTCCA +
Preference number: 5 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHAPASD*GANVIP
Trigger: TGGAATCACATTTGCTCCCAAATCTGAAGCTGGTGC...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGCATTGTCCGTGCACTTaGGGTAAAGGTAGGTCTTCA +
Preference number: 5 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSHCPCT*GKGRSS
Trigger: TGAAGACCTACCTTTACCCAAAGTGCACGGACAATG...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 90 bp ATCATCCTCTCTTTCAGGGCTTTCTCTACTTCCAGATCTTTGCCGTaGATAATGGATTGTCCCACCTTGAGAAAGGTGCTCCTGGACCTC +
Preference number: 5 (lower is better)
Translates to: IILSFRAFSTSRSLP*IMDCPTLRKVLLDL
Trigger: GAGGTCCAGGAGCACCTTTCTCAAGGTGGGACAATCCATTATGCACGGCAAAGATCTGGAAGTAGAGAAAGCCCTGAAAGAGAGGATGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 90 bp GACTTCTTCAATCTGCTGCATCTTAAAGGGGCGGAATGCTATCGGTaGCTTCTGTATGGAGGACTTCTTCTTCCTGTTCTTGGGACTGGA +
Preference number: 5 (lower is better)
Translates to: DFFNLLHLKGAECYR*LLYGGLLLPVLGTG
Trigger: TCCAGTCCCAAGAACAGGAAGAAGAAGTCCTCCATACAGAAGGCACCGATAGCATTCCGCCCCTTTAAGATGCAGCAGATTGAAGAAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 90 bp ACCCCAACACGCATGTTCACCATCTCTTTCTTCTCCTGGCAGAACTaGTCGATGGCTTTTATCATGCCTAAGCCCATTTCAATGCAGCAG +
Preference number: 5 (lower is better)
Translates to: TPTRMFTISFFSWQN*SMAFIMPKPISMQQ
Trigger: CTGCTGCATTGAAATGGGCTTAGGCATGATAAAAGCCATCGAGCAGTTCTGCCAGGAGAAGAAAGAGATGGTGAACATGCGTGTTGGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 90 bp GGTCTTAGGCTCGTCTTGACAGCCATTTTGCACAGTTCCTCCTTCTaGACCAGCTTCAGATTTGGGAGCAAATGTGATTCCACAAGAAGG +
Preference number: 5 (lower is better)
Translates to: GLRLVLTAILHSSSF*TSFRFGSKCDSTRR
Trigger: CCTTCTTGTGGAATCACATTTGCTCCCAAATCTGAAGCTGGTGCAGAAGGAGGAACTGTGCAAAATGGCTGTCAAGACGAGCCTAAGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTACTTCCAGATCTTaGCCGTGCATAATGGATTGT +
Preference number: 5 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSSTSRS*PCIMDC
Trigger: ACAATCCATTATGCACGGCAAAGATCTGGAAGTAGA...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCAGGTTATCAAAGGTTTaGACAGTCTGCGCCAAATCA +
Preference number: 5 (lower is better)
Translates to: HVTPHLGTETEVLDSTTARLSKV*TVCAKS
Trigger: TGATTTGGCGCAGACTGTCAAAACCTTTGATAACCT...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACTCAAGAACACGGTGGTaGACAGAAACACATCCAGAA +
Preference number: 5 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHSRTRW*TETHPE
Trigger: TTCTGGATGTGTTTCTGTCAACCACCGTGTTCTTGA...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCATAACATATTGTTGTaGAAGTCATCCACCACGCGC +
Preference number: 5 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQHNILL*KSSTTR
Trigger: GCGCGTGGTGGATGACTTCAACAACAATATGTTATG...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACCATAACATATTGTTGTaGAAGTCATCCACCACGCGC +
Preference number: 5 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHHNILL*KSSTTR
Trigger: GCGCGTGGTGGATGACTTCAACAACAATATGTTATG...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCCTTTTCTATGGCTTaGCCAAATGGAAACCTTTCC +
Preference number: 5 (lower is better)
Translates to: QPIDTDVTVFGHAEHLGSSFSMA*PNGNLS
Trigger: GGAAAGGTTTCCATTTGGCAAAGCCATAGAAAAGGA...GCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 90 bp CACAGGAGAATTCTTTATGACCTCTTCCTGGTAGCTGGTTCTATATaGTCGCTCCAGCTCCTGGTCCAGGAAGTTCAGGCTGAACTGATT +
Preference number: 5 (lower is better)
Translates to: HRRILYDLFLVAGSI*SLQLLVQEVQAELI
Trigger: AATCAGTTCAGCCTGAACTTCCTGGACCAGGAGCTGGAGCGATCATATAGAACCAGCTACCAGGAAGAGGTCATAAAGAATTCTCCTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 90 bp CACGCATGTTCACCATCTCTTTCTTCTCCTGGCAGAACTGCTCGATaGCTTTTATCATGCCTAAGCCCATTTCAATGCAGCAGTAGGCAT +
Preference number: 5 (lower is better)
Translates to: HACSPSLSSPGRTAR*LLSCLSPFQCSSRH
Trigger: ATGCCTACTGCTGCATTGAAATGGGCTTAGGCATGATAAAAGCCATCGAGCAGTTCTGCCAGGAGAAGAAAGAGATGGTGAACATGCGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGTGTCGTCTAAGTATTTaGCAGTGGCCTCAGATATGT +
Preference number: 5 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQCRLSI*QWPQIC
Trigger: ACATATCTGAGGCCACTGCAAAATACTTAGACGACA...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACTGTCGTCTAAGTATTTaGCAGTGGCCTCAGATATGT +
Preference number: 5 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHCRLSI*QWPQIC
Trigger: ACATATCTGAGGCCACTGCAAAATACTTAGACGACA...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACAGGTTATCAAAGGTTTaGACAGTCTGCGCCAAATCA +
Preference number: 5 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHRLSKV*TVCAKS
Trigger: TGATTTGGCGCAGACTGTCAAAACCTTTGATAACCT...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGATCAGGCTGTCTTCTTaGATGACATCAACAAAGTGG +
Preference number: 5 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSIRLSS*MTSTKW
Trigger: CCACTTTGTTGATGTCATCAAAGAAGACAGCCTGAT...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTCAAGAACACGGTGGTaGACAGAAACACATCCAGAA +
Preference number: 5 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPSRTRW*TETHPE
Trigger: TTCTGGATGTGTTTCTGTCAACCACCGTGTTCTTGA...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp AGCACAACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTCATAACATATTGTTGTaGAAGTCATCCACCACGCGC +
Preference number: 5 (lower is better)
Translates to: STTAYRHRCYCVWTRRAPHNILL*KSSTTR
Trigger: GCGCGTGGTGGATGACTTCAACAACAATATGTTATG...AGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGTTGTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CACGTGACACCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCAACCATAACATATTGTaGTTGAAGTCATCCACCACG +
Preference number: 5 (lower is better)
Translates to: HVTPHLGTETEVLDSTTANHNIL*LKSSTT
Trigger: CGTGGTGGATGACTTCAACAACAATATGTTATGGTT...GGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGGTGTCACGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp ACAGCCTATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGTCCTTTTCTATGGCTTaGCCAAATGGAAACCTTTCC +
Preference number: 5 (lower is better)
Translates to: TAYRHRCYCVWTRRAPWQSFSMA*PNGNLS
Trigger: GGAAAGGTTTCCATTTGGCAAAGCCATAGAAAAGGA...CTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATAGGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 90 bp ATTTCATACCTGTCGTCTAAGTATTTTGCAGTGGCCTCAGATATGTaGACTTTGCCAGCCACTCCCAGCTGCTCCATGAGATTAGCCAAG +
Preference number: 5 (lower is better)
Translates to: ISYLSSKYFAVASDM*TLPATPSCSMRLAK
Trigger: CTTGGCTAATCTCATGGAGCAGCTGGGAGTGGCTGGCAAAGTTCACATATCTGAGGCCACTGCAAAATACTTAGACGACAGGTATGAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp CCACATCTGGGGACAGAAACTGAGGTGCTAGATAGCACAACAGCCTATCGACACTTGAACCATAACATATaGTTGTTGAAGTCATCCACC +
Preference number: 5 (lower is better)
Translates to: PHLGTETEVLDSTTAYRHLNHNI*LLKSST
Trigger: GGTGGATGACTTCAACAACAATATGTTATGGTTCAA...GTGTCGATAGGCTGTTGTGCTATCTAGCACCTCAGTTTCTGTCCCCAGATGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS-3UTR CAA 90 bp TATCGACACAGATGTTACTGTGTTTGGACACGCAGAGCACCTTGGCAGCTCTCGTTGAACCATAACATATaGTTGTTGAAGTCATCCACC +
Preference number: 5 (lower is better)
Translates to: YRHRCYCVWTRRAPWQLSLNHNI*LLKSST
Trigger: GGTGGATGACTTCAACAACAATATGTTATGGTTCAA...CGAGAGCTGCCAAGGTGCTCTGCGTGTCCAAACACAGTAACATCTGTGTCGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 90 bp AATTCTCACTCTCCTCGTCCCCTTGTTTCATTAAGTCGTCGGCTATaGTTCTTGGCATCACTGAATGAATCATCCTCTCTTTCAGGGCTT +
Preference number: 5 (lower is better)
Translates to: NSHSPRPLVSLSRRL*FLASLNESSSLSGL
Trigger: AAGCCCTGAAAGAGAGGATGATTCATTCAGTGATGCCAAGAATCATAGCCGACGACTTAATGAAACAAGGGGACGAGGAGAGTGAGAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 90 bp CCTTGTTTCATTAAGTCGTCGGCTATGATTCTTGGCATCACTGAATaGATCATCCTCTCTTTCAGGGCTTTCTCTACTTCCAGATCTTTG +
Preference number: 5 (lower is better)
Translates to: PCFIKSSAMILGITE*IILSFRAFSTSRSL
Trigger: CAAAGATCTGGAAGTAGAGAAAGCCCTGAAAGAGAGGATGATTCATTCAGTGATGCCAAGAATCATAGCCGACGACTTAATGAAACAAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 72 bp TCCTTGCCTATGAGGCTGGCCGGCCTCCTGCCGTCCTaGAGCACTGAGCTGTTGCATGGGTTCCTCTGGGCA +
Preference number: 6 (lower is better)
Translates to: SLPMRLAGLLPS*STELLHGFLWA
Trigger: TGCCCAGAGGAACCCATGCAACAGCTCAGTGCTGCAGGACGGCAGGAGGCCGGCCAGCCTCATAGGCAAGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 72 bp CTCACGGATGTTCTTGAACCTGAGCGGGAGGAGGGCTaGCTGGTCCAAGCTCACCCCTGCCCACCGTCCCTT +
Preference number: 6 (lower is better)
Translates to: LTDVLEPEREEG*LVQAHPCPPSL
Trigger: AAGGGACGGTGGGCAGGGGTGAGCTTGGACCAGTCAGCCCTCCTCCCGCTCAGGTTCAAGAACATCCGTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 72 bp CGGATGTTCTTGAACCTGAGCGGGAGGAGGGCTGACTaGTCCAAGCTCACCCCTGCCCACCGTCCCTTCTCT +
Preference number: 6 (lower is better)
Translates to: RMFLNLSGRRAD*SKLTPAHRPFS
Trigger: AGAGAAGGGACGGTGGGCAGGGGTGAGCTTGGACCAGTCAGCCCTCCTCCCGCTCAGGTTCAAGAACATCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 72 bp TCATCTGTGGGAGACCGCCCAATGCTGCCGTCCACCTaGACTCGGATGTCTGGGGAGATGGACAGCTGGTGC +
Preference number: 6 (lower is better)
Translates to: SSVGDRPMLPST*TRMSGEMDSWC
Trigger: GCACCAGCTGTCCATCTCCCCAGACATCCGAGTCCAGGTGGACGGCAGCATTGGGCGGTCTCCCACAGATGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 72 bp CGGCCTCCACATCCCCATGGTAGTGCAGCCGGTAGCTaGCCTCGAACTCCCGGTTCAGGAACCAGACCAAGA +
Preference number: 6 (lower is better)
Translates to: RPPHPHGSAAGS*PRTPGSGTRPR
Trigger: TCTTGGTCTGGTTCCTGAACCGGGAGTTCGAGGTCAGCTACCGGCTGCACTACCATGGGGATGTGGAGGCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 72 bp CCCCTGAGTCTCCCGAGCTGCTACAGCTGGAGGAGATaGTGTACTTGCAGTGCTTCGGGTGGGTGTTGGAGG +
Preference number: 6 (lower is better)
Translates to: PLSLPSCYSWRR*CTCSASGGCWR
Trigger: CCTCCAACACCCACCCGAAGCACTGCAAGTACAGCATCTCCTCCAGCTGTAGCAGCTCGGGAGACTCAGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS GCA 72 bp GCTCCAGAGAAGGCAGGCGAAGCCCACATAAAAGAGTaGGTACCGGAAGCGGCGCTGGGTCTGCGGAAAGCA +
Preference number: 6 (lower is better)
Translates to: APEKAGEAHIKE*VPEAALGLRKA
Trigger: TGCTTTCCGCAGACCCAGCGCCGCTTCCGGTACGCACTCTTTTATGTGGGCTTCGCCTGCCTTCTCTGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS GCA 72 bp CAGCCAGGGCAGGAAGAGACACCAAGATTGCCCCAATaGAGTGGCGAGGGAGCCAGCCAGCGATCCATTCCA +
Preference number: 6 (lower is better)
Translates to: QPGQEETPRLPQ*SGEGASQRSIP
Trigger: TGGAATGGATCGCTGGCTGGCTCCCTCGCCACTGCATTGGGGCAATCTTGGTGTCTCTTCCTGCCCTGGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 72 bp CTTGGCGAACTCGAAGAGGATACGCAGATGCTCCTGTaGGTGGCCACCCTCCTGACACTGGGCCGTGTTCAG +
Preference number: 6 (lower is better)
Translates to: LGELEEDTQMLL*VATLLTLGRVQ
Trigger: CTGAACACGGCCCAGTGTCAGGAGGGTGGCCACCCACAGGAGCATCTGCGTATCCTCTTCGAGTTCGCCAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp TCCAGGCAGGCCTCCTCCAGGTTCATGGAGTCGAATTaGGGGTCCCACCACCGGCTGGAGGCCCTCTCAAAA +
Preference number: 6 (lower is better)
Translates to: SRQASSRFMESN*GSHHRLEALSK
Trigger: TTTTGAGAGGGCCTCCAGCCGGTGGTGGGACCCCAAATTCGACTCCATGAACCTGGAGGAGGCCTGCCTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS CAA 72 bp CTGGCCGGCCTCCTGCCGTCCTGCAGCACTGAGCTGTaGCATGGGTTCCTCTGGGCACTGAAATTCTGTGCT +
Preference number: 6 (lower is better)
Translates to: LAGLLPSCSTEL*HGFLWALKFCA
Trigger: AGCACAGAATTTCAGTGCCCAGAGGAACCCATGCAACAGCTCAGTGCTGCAGGACGGCAGGAGGCCGGCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 90 bp CCTATGAGGCTGGCCGGCCTCCTGCCGTCCTGCAGCACTGAGCTGTaGCATGGGTTCCTCTGGGCACTGAAATTCTGTGCTGAGTCCAAG +
Preference number: 6 (lower is better)
Translates to: PMRLAGLLPSCSTEL*HGFLWALKFCAESK
Trigger: CTTGGACTCAGCACAGAATTTCAGTGCCCAGAGGAACCCATGCAACAGCTCAGTGCTGCAGGACGGCAGGAGGCCGGCCAGCCTCATAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 72 bp GAGCTGTCAACACGTCCTGACAGAGGTGTCCAAACCTaGAACTGCGCAGCCAGGGTCAGGGCGAACACCAGC +
Preference number: 6 (lower is better)
Translates to: ELSTRPDRGVQT*NCAARVRANTS
Trigger: GCTGGTGTTCGCCCTGACCCTGGCTGCGCAGTTTCAGGTTTGGACACCTCTGTCAGGACGTGTTGACAGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS GCA 72 bp TGGTCCAAGCTCACCCCTGCCCACCGTCCCTTCTCTTaGAGGATCTCACAGAGGGAGGTCTGGCTGTTAGTG +
Preference number: 6 (lower is better)
Translates to: WSKLTPAHRPFS*RISQREVWLLV
Trigger: CACTAACAGCCAGACCTCCCTCTGTGAGATCCTGCAAGAGAAGGGACGGTGGGCAGGGGTGAGCTTGGACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 72 bp GCCAGTCAGCCTGGTCTCTCATGCTCTGGATCTTGGTaGGGTGTAGGTCGGCCTCCACATCCCCATGGTAGT +
Preference number: 6 (lower is better)
Translates to: ASQPGLSCSGSW*GVGRPPHPHGS
Trigger: ACTACCATGGGGATGTGGAGGCCGACCTACACCGCACCAAGATCCAGAGCATGAGAGACCAGGCTGACTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 72 bp ACCTGGACTCGGATGTCTGGGGAGATGGACAGCTGGTaGTGGGGAACCACTCCATTGTCCGTGCACTTTGGG +
Preference number: 6 (lower is better)
Translates to: TWTRMSGEMDSW*WGTTPLSVHFG
Trigger: CCCAAAGTGCACGGACAATGGAGTGGTTCCCCAGCACCAGCTGTCCATCTCCCCAGACATCCGAGTCCAGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 72 bp CCAAGTTGGCAATCTCATCTGTGGGAGACCGCCCAATaGTGCCGTCCACCTGGACTCGGATGTCTGGGGAGA +
Preference number: 6 (lower is better)
Translates to: PSWQSHLWETAQ*CRPPGLGCLGR
Trigger: TCTCCCCAGACATCCGAGTCCAGGTGGACGGCAGCATTGGGCGGTCTCCCACAGATGAGATTGCCAACTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 72 bp GTAGCCAGTCAGCCTGGTCTCTCATGCTCTGGATCTTaGTGCGGTGTAGGTCGGCCTCCACATCCCCATGGT +
Preference number: 6 (lower is better)
Translates to: VASQPGLSCSGS*CGVGRPPHPHG
Trigger: ACCATGGGGATGTGGAGGCCGACCTACACCGCACCAAGATCCAGAGCATGAGAGACCAGGCTGACTGGCTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 72 bp TTCCGCAGTAGCCAGTCAGCCTGGTCTCTCATGCTCTaGATCTTGGTGCGGTGTAGGTCGGCCTCCACATCC +
Preference number: 6 (lower is better)
Translates to: FRSSQSAWSLML*ILVRCRSASTS
Trigger: GGATGTGGAGGCCGACCTACACCGCACCAAGATCCAGAGCATGAGAGACCAGGCTGACTGGCTACTGCGGAA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp AGTAGCCAGTCAGCCTGGTCTCTCATGCTCTGGATCTaGGTGCGGTGTAGGTCGGCCTCCACATCCCCATGG +
Preference number: 6 (lower is better)
Translates to: SSQSAWSLMLWI*VRCRSASTSPW
Trigger: CCATGGGGATGTGGAGGCCGACCTACACCGCACCAAGATCCAGAGCATGAGAGACCAGGCTGACTGGCTACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 72 bp CCACGATGGTGGCAAGGGAGGACCTCATCCAGGAGCTaGGCTGGCAGAAGTTACAGTAGTGCACAACGGCCA +
Preference number: 6 (lower is better)
Translates to: PRWWQGRTSSRS*AGRSYSSAQRP
Trigger: TGGCCGTTGTGCACTACTGTAACTTCTGCCAGCTCAGCTCCTGGATGAGGTCCTCCCTTGCCACCATCGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 72 bp CCGTCCTGCAGCACTGAGCTGTTGCATGGGTTCCTCTaGGCACTGAAATTCTGTGCTGAGTCCAAGGGGGAC +
Preference number: 6 (lower is better)
Translates to: PSCSTELLHGFL*ALKFCAESKGD
Trigger: GTCCCCCTTGGACTCAGCACAGAATTTCAGTGCCCAGAGGAACCCATGCAACAGCTCAGTGCTGCAGGACGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 72 bp TCCACCTGGACTCGGATGTCTGGGGAGATGGACAGCTaGTGCTGGGGAACCACTCCATTGTCCGTGCACTTT +
Preference number: 6 (lower is better)
Translates to: STWTRMSGEMDS*CWGTTPLSVHF
Trigger: AAAGTGCACGGACAATGGAGTGGTTCCCCAGCACCAGCTGTCCATCTCCCCAGACATCCGAGTCCAGGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 72 bp ACTGAACGGAAGGCACCAAGTTGGCAATCTCATCTGTaGGAGACCGCCCAATGCTGCCGTCCACCTGGACTC +
Preference number: 6 (lower is better)
Translates to: TERKAPSWQSHL*ETAQCCRPPGL
Trigger: GAGTCCAGGTGGACGGCAGCATTGGGCGGTCTCCCACAGATGAGATTGCCAACTTGGTGCCTTCCGTTCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp GACAGCTGCTTAGGGTTGATCTTGACCCTCACGCTGTaGCTGTCTCCGCTTGAGTCGCAGCTCACCTCGGTG +
Preference number: 6 (lower is better)
Translates to: DSCLGLILTLTL*LSPLESQLTSV
Trigger: CACCGAGGTGAGCTGCGACTCAAGCGGAGACAGCAACAGCGTGAGGGTCAAGATCAACCCTAAGCAGCTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS CAA 90 bp GTGAGCTTCTCCTCTGCAGGAGGGCTCAGAAGTCCATTCTGGGTTTaGGAGTTGGGTCCTCCAGAAGCCTTGGTGCTGGTCTTAGGCTCG +
Preference number: 6 (lower is better)
Translates to: VSFSSAGGLRSPFWV*ELGPPEALVLVLGS
Trigger: CGAGCCTAAGACCAGCACCAAGGCTTCTGGAGGACCCAACTCCAAAACCCAGAATGGACTTCTGAGCCCTCCTGCAGAGGAGAAGCTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 72 bp GTTGATCTTGACCCTCACGCTGTTGCTGTCTCCGCTTaGGTCGCAGCTCACCTCGGTGCTATGGTGATGCAG +
Preference number: 6 (lower is better)
Translates to: VDLDPHAVAVSA*VAAHLGAMVMQ
Trigger: CTGCATCACCATAGCACCGAGGTGAGCTGCGACTCAAGCGGAGACAGCAACAGCGTGAGGGTCAAGATCAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS GCA 72 bp CAGTCCCCCAGAGTGCTGATCTTCTCACACTTGGTCTaGTCACACAGGCGGTCAAAGCGACCGAACAGGTCA +
Preference number: 6 (lower is better)
Translates to: QSPRVLIFSHLV*SHRRSKRPNRS
Trigger: TGACCTGTTCGGTCGCTTTGACCGCCTGTGTGAGCAGACCAAGTGTGAGAAGATCAGCACTCTGGGGGACTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 72 bp CCTCTGCAGGAGGGCTCAGAAGTCCATTCTGGGTTTTaGAGTTGGGTCCTCCAGAAGCCTTGGTGCTGGTCT +
Preference number: 6 (lower is better)
Translates to: PLQEGSEVHSGF*SWVLQKPWCWS
Trigger: AGACCAGCACCAAGGCTTCTGGAGGACCCAACTCCAAAACCCAGAATGGACTTCTGAGCCCTCCTGCAGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp GCAGGAGGGCTCAGAAGTCCATTCTGGGTTTTGGAGTaGGGTCCTCCAGAAGCCTTGGTGCTGGTCTTAGGC +
Preference number: 6 (lower is better)
Translates to: AGGLRSPFWVLE*GPPEALVLVLG
Trigger: GCCTAAGACCAGCACCAAGGCTTCTGGAGGACCCAACTCCAAAACCCAGAATGGACTTCTGAGCCCTCCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp TCCTCTGCAGGAGGGCTCAGAAGTCCATTCTGGGTTTaGGAGTTGGGTCCTCCAGAAGCCTTGGTGCTGGTC +
Preference number: 6 (lower is better)
Translates to: SSAGGLRSPFWV*ELGPPEALVLV
Trigger: GACCAGCACCAAGGCTTCTGGAGGACCCAACTCCAAAACCCAGAATGGACTTCTGAGCCCTCCTGCAGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 90 bp CTACAGCTGGAGGAGATGCTGTACTTGCAGTGCTTCGGGTGGGTGTaGGAGGACAGCTGCTTAGGGTTGATCTTGACCCTCACGCTGTTG +
Preference number: 6 (lower is better)
Translates to: LQLEEMLYLQCFGWV*EDSCLGLILTLTLL
Trigger: CAACAGCGTGAGGGTCAAGATCAACCCTAAGCAGCTGTCCTCCAACACCCACCCGAAGCACTGCAAGTACAGCATCTCCTCCAGCTGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS CAA 90 bp CACTTGGTCTGCTCACACAGGCGGTCAAAGCGACCGAACAGGTCATaGAGTAGGCCTACCAAGGCATGCGCAGATTTGTTGGCGCTCATC +
Preference number: 6 (lower is better)
Translates to: HLVCSHRRSKRPNRS*SRPTKACADLLALI
Trigger: GATGAGCGCCAACAAATCTGCGCATGCCTTGGTAGGCCTACTCAATGACCTGTTCGGTCGCTTTGACCGCCTGTGTGAGCAGACCAAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 72 bp GGCCGTGAGAGTATGATTGGAGCTGTCAACACGTCCTaGCAGAGGTGTCCAAACCTGAAACTGCGCAGCCAG +
Preference number: 6 (lower is better)
Translates to: GRESMIGAVNTS*QRCPNLKLRSQ
Trigger: CTGGCTGCGCAGTTTCAGGTTTGGACACCTCTGTCAGGACGTGTTGACAGCTCCAATCATACTCTCACGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS TCA 72 bp GATAAGCAAGTGTCCGCCGGAGTGGCCGTGAGAGTATaGTTGGAGCTGTCAACACGTCCTGACAGAGGTGTC +
Preference number: 6 (lower is better)
Translates to: DKQVSAGVAVRV*LELSTRPDRGV
Trigger: GACACCTCTGTCAGGACGTGTTGACAGCTCCAATCATACTCTCACGGCCACTCCGGCGGACACTTGCTTATC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS TCA 72 bp GCTCACACAGGCGGTCAAAGCGACCGAACAGGTCATTaGGTAGGCCTACCAAGGCATGCGCAGATTTGTTGG +
Preference number: 6 (lower is better)
Translates to: AHTGGQSDRTGH*VGLPRHAQICW
Trigger: CCAACAAATCTGCGCATGCCTTGGTAGGCCTACTCAATGACCTGTTCGGTCGCTTTGACCGCCTGTGTGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 72 bp TACTTGCAGTGCTTCGGGTGGGTGTTGGAGGACAGCTaGTTAGGGTTGATCTTGACCCTCACGCTGTTGCTG +
Preference number: 6 (lower is better)
Translates to: YLQCFGWVLEDS*LGLILTLTLLL
Trigger: CAGCAACAGCGTGAGGGTCAAGATCAACCCTAAGCAGCTGTCCTCCAACACCCACCCGAAGCACTGCAAGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS CCA 72 bp AGCTTCTCCTCTGCAGGAGGGCTCAGAAGTCCATTCTaGGTTTTGGAGTTGGGTCCTCCAGAAGCCTTGGTG +
Preference number: 6 (lower is better)
Translates to: SFSSAGGLRSPF*VLELGPPEALV
Trigger: CACCAAGGCTTCTGGAGGACCCAACTCCAAAACCCAGAATGGACTTCTGAGCCCTCCTGCAGAGGAGAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp GAGGAGATGCTGTACTTGCAGTGCTTCGGGTGGGTGTaGGAGGACAGCTGCTTAGGGTTGATCTTGACCCTC +
Preference number: 6 (lower is better)
Translates to: EEMLYLQCFGWV*EDSCLGLILTL
Trigger: GAGGGTCAAGATCAACCCTAAGCAGCTGTCCTCCAACACCCACCCGAAGCACTGCAAGTACAGCATCTCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS CAA 72 bp GCTGGTGCTGGGGAACCACTCCATTGTCCGTGCACTTaGGGTAAAGGTAGGTCTTCATCTGCCCTTTCCCCT +
Preference number: 6 (lower is better)
Translates to: AGAGEPLHCPCT*GKGRSSSALSP
Trigger: AGGGGAAAGGGCAGATGAAGACCTACCTTTACCCAAAGTGCACGGACAATGGAGTGGTTCCCCAGCACCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 90 bp GGAGTTGGGTCCTCCAGAAGCCTTGGTGCTGGTCTTAGGCTCGTCTaGACAGCCATTTTGCACAGTTCCTCCTTCTGCACCAGCTTCAGA +
Preference number: 6 (lower is better)
Translates to: GVGSSRSLGAGLRLV*TAILHSSSFCTSFR
Trigger: TCTGAAGCTGGTGCAGAAGGAGGAACTGTGCAAAATGGCTGTCAAGACGAGCCTAAGACCAGCACCAAGGCTTCTGGAGGACCCAACTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 72 bp CGACCGAACAGGTCATTGAGTAGGCCTACCAAGGCATaGGCAGATTTGTTGGCGCTCATCTTGGTGAAACCC +
Preference number: 6 (lower is better)
Translates to: RPNRSLSRPTKA*ADLLALILVKP
Trigger: GGGTTTCACCAAGATGAGCGCCAACAAATCTGCGCATGCCTTGGTAGGCCTACTCAATGACCTGTTCGGTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 72 bp ACAGAGGGAGGTCTGGCTGTTAGTGAGCTTCTCCTCTaGAGGAGGGCTCAGAAGTCCATTCTGGGTTTTGGA +
Preference number: 6 (lower is better)
Translates to: TEGGLAVSELLL*RRAQKSILGFG
Trigger: TCCAAAACCCAGAATGGACTTCTGAGCCCTCCTGCAGAGGAGAAGCTCACTAACAGCCAGACCTCCCTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 72 bp TCACGGTCCCTCGGTAGTCAAAGTCATAACCCATCTTaGTCAGCACACGGTAGCTCTCTTCGCTCACCTGGA +
Preference number: 6 (lower is better)
Translates to: SRSLGSQSHNPS*SAHGSSLRSPG
Trigger: TCCAGGTGAGCGAAGAGAGCTACCGTGTGCTGAGCAAGATGGGTTATGACTTTGACTACCGAGGGACCGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 72 bp AAAGCAGGGCCTCTGCACAGCTGCAGTGGGACTCCTTaGCTCTCTGACCCGATATCAGGTATGTCTTCAAAC +
Preference number: 6 (lower is better)
Translates to: KAGPLHSCSGTP*LSDPISGMSSN
Trigger: GTTTGAAGACATACCTGATATCGGGTCAGAGAGCCAAGGAGTCCCACTGCAGCTGTGCAGAGGCCCTGCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 72 bp CTGGTGCTGGGGAACCACTCCATTGTCCGTGCACTTTaGGTAAAGGTAGGTCTTCATCTGCCCTTTCCCCTT +
Preference number: 6 (lower is better)
Translates to: LVLGNHSIVRAL*VKVGLHLPFPL
Trigger: AAGGGGAAAGGGCAGATGAAGACCTACCTTTACCCAAAGTGCACGGACAATGGAGTGGTTCCCCAGCACCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp TGCTCACACAGGCGGTCAAAGCGACCGAACAGGTCATaGAGTAGGCCTACCAAGGCATGCGCAGATTTGTTG +
Preference number: 6 (lower is better)
Translates to: CSHRRSKRPNRS*SRPTKACADLL
Trigger: CAACAAATCTGCGCATGCCTTGGTAGGCCTACTCAATGACCTGTTCGGTCGCTTTGACCGCCTGTGTGAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 72 bp CTACTTGAGATAAGCAAGTGTCCGCCGGAGTGGCCGTaGGAGTATGATTGGAGCTGTCAACACGTCCTGACA +
Preference number: 6 (lower is better)
Translates to: LLEISKCPPEWP*EYDWSCQHVLT
Trigger: TGTCAGGACGTGTTGACAGCTCCAATCATACTCTCACGGCCACTCCGGCGGACACTTGCTTATCTCAAGTAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS TCA 72 bp AGGAGCACTTCGATGCATATGGAGAAGCTTCCTACTTaGGATAAGCAAGTGTCCGCCGGAGTGGCCGTGAGA +
Preference number: 6 (lower is better)
Translates to: RSTSMHMEKLPT*DKQVSAGVAVR
Trigger: TCTCACGGCCACTCCGGCGGACACTTGCTTATCTCAAGTAGGAAGCTTCTCCATATGCATCGAAGTGCTCCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS TCA 72 bp GCCTCTGCACAGCTGCAGTGGGACTCCTTGGCTCTCTaGCCCGATATCAGGTATGTCTTCAAACCTTTCAAC +
Preference number: 6 (lower is better)
Translates to: ASAQLQWDSLAL*PDIRYVFKPFN
Trigger: GTTGAAAGGTTTGAAGACATACCTGATATCGGGTCAGAGAGCCAAGGAGTCCCACTGCAGCTGTGCAGAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 72 bp GTTGCATGGGTTCCTCTGGGCACTGAAATTCTGTGCTaGGTCCAAGGGGGACATCACAATGGAACTGTCCTG +
Preference number: 6 (lower is better)
Translates to: VAWVPLGTEILC*VQGGHHNGTVL
Trigger: CAGGACAGTTCCATTGTGATGTCCCCCTTGGACTCAGCACAGAATTTCAGTGCCCAGAGGAACCCATGCAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp TCAACAAAGTGGGCATCAGTTTTCTCACGGATGTTCTaGAACCTGAGCGGGAGGAGGGCTGACTGGTCCAAG +
Preference number: 6 (lower is better)
Translates to: STKWASVFSRMF*NLSGRRADWSK
Trigger: CTTGGACCAGTCAGCCCTCCTCCCGCTCAGGTTCAAGAACATCCGTGAGAAAACTGATGCCCACTTTGTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 90 bp TTGATGACATCAACAAAGTGGGCATCAGTTTTCTCACGGATGTTCTaGAACCTGAGCGGGAGGAGGGCTGACTGGTCCAAGCTCACCCCT +
Preference number: 6 (lower is better)
Translates to: LMTSTKWASVFSRMF*NLSGRRADWSKLTP
Trigger: AGGGGTGAGCTTGGACCAGTCAGCCCTCCTCCCGCTCAGGTTCAAGAACATCCGTGAGAAAACTGATGCCCACTTTGTTGATGTCATCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 90 bp GAGGACTTCTTCTTCCTGTTCTTGGGACTGGAGGTGGCATGCCTCTaGACGGAATTCTCACTCTCCTCGTCCCCTTGTTTCATTAAGTCG +
Preference number: 6 (lower is better)
Translates to: EDFFFLFLGLEVACL*TEFSLSSSPCFIKS
Trigger: CGACTTAATGAAACAAGGGGACGAGGAGAGTGAGAATTCCGTCAAGAGGCATGCCACCTCCAGTCCCAAGAACAGGAAGAAGAAGTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 90 bp AATGCTATCGGTGCCTTCTGTATGGAGGACTTCTTCTTCCTGTTCTaGGGACTGGAGGTGGCATGCCTCTTGACGGAATTCTCACTCTCC +
Preference number: 6 (lower is better)
Translates to: NAIGAFCMEDFFFLF*GLEVACLLTEFSLS
Trigger: GGAGAGTGAGAATTCCGTCAAGAGGCATGCCACCTCCAGTCCCAAGAACAGGAAGAAGAAGTCCTCCATACAGAAGGCACCGATAGCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 90 bp TCCAGAAGCCTTGGTGCTGGTCTTAGGCTCGTCTTGACAGCCATTTaGCACAGTTCCTCCTTCTGCACCAGCTTCAGATTTGGGAGCAAA +
Preference number: 6 (lower is better)
Translates to: SRSLGAGLRLVLTAI*HSSSFCTSFRFGSK
Trigger: TTTGCTCCCAAATCTGAAGCTGGTGCAGAAGGAGGAACTGTGCAAAATGGCTGTCAAGACGAGCCTAAGACCAGCACCAAGGCTTCTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 90 bp CATAACATATTGTTGTTGAAGTCATCCACCACGCGCATCATCTCCTaGGCGAACTCGAAGAGGATACGCAGATGCTCCTGTGGGTGGCCA +
Preference number: 6 (lower is better)
Translates to: HNILLLKSSTTRIIS*ANSKRIRRCSCGWP
Trigger: TGGCCACCCACAGGAGCATCTGCGTATCCTCTTCGAGTTCGCCAAGGAGATGATGCGCGTGGTGGATGACTTCAACAACAATATGTTATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 90 bp CCTGCTGTGAGGGGTCCGTGGTTAAAGCCGACCCTGAGCTTGAAGTaGAACCATAACATATTGTTGTTGAAGTCATCCACCACGCGCATC +
Preference number: 6 (lower is better)
Translates to: PAVRGPWLKPTLSLK*NHNILLLKSSTTRI
Trigger: GATGCGCGTGGTGGATGACTTCAACAACAATATGTTATGGTTCAACTTCAAGCTCAGGGTCGGCTTTAACCACGGACCCCTCACAGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 72 bp GAAGCAGGTGATGGAGAGAATCAAGAACACGGTGGTTaGCAGAAACACATCCAGAAGGGAGCTGAAGGTGGC +
Preference number: 6 (lower is better)
Translates to: EAGDGENQEHGG*QKHIQKGAEGG
Trigger: GCCACCTTCAGCTCCCTTCTGGATGTGTTTCTGTCAACCACCGTGTTCTTGATTCTCTCCATCACCTGCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp TTGTTGTTGAAGTCATCCACCACGCGCATCATCTCCTaGGCGAACTCGAAGAGGATACGCAGATGCTCCTGT +
Preference number: 6 (lower is better)
Translates to: LLLKSSTTRIIS*ANSKRIRRCSC
Trigger: ACAGGAGCATCTGCGTATCCTCTTCGAGTTCGCCAAGGAGATGATGCGCGTGGTGGATGACTTCAACAACAA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 72 bp CACACACCACCAGGAAGCACAGAGCTGGGACCACCATaGCAATCACTTTGGATTTCATGTGGACAGCGAAAT +
Preference number: 6 (lower is better)
Translates to: HTPPGSTELGPP*QSLWISCGQRN
Trigger: ATTTCGCTGTCCACATGAAATCCAAAGTGATTGTCATGGTGGTCCCAGCTCTGTGCTTCCTGGTGGTGTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS TCA 72 bp CTGTCGTCTAAGTATTTTGCAGTGGCCTCAGATATGTaGACTTTGCCAGCCACTCCCAGCTGCTCCATGAGA +
Preference number: 6 (lower is better)
Translates to: LSSKYFAVASDM*TLPATPSCSMR
Trigger: TCTCATGGAGCAGCTGGGAGTGGCTGGCAAAGTTCACATATCTGAGGCCACTGCAAAATACTTAGACGACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 72 bp CTATCATCAGATCCCAGGGAAGCCTTGTCCGAATACTaGACGGAAGGCACCAAGTTGGCAATCTCATCTGTG +
Preference number: 6 (lower is better)
Translates to: LSSDPREALSEY*TEGTKLAISSV
Trigger: CACAGATGAGATTGCCAACTTGGTGCCTTCCGTTCAGTATTCGGACAAGGCTTCCCTGGGATCTGATGATAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 72 bp GGGCAAGTCTTAAGGTTATCAAAGGTTTTGACAGTCTaGGCCAAATCACTGACACTCCCTGGCGATGCTGTC +
Preference number: 6 (lower is better)
Translates to: GQVLRLSKVLTV*AKSLTLPGDAV
Trigger: GACAGCATCGCCAGGGAGTGTCAGTGATTTGGCGCAGACTGTCAAAACCTTTGATAACCTTAAGACTTGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp TCATTGAGTAGGCCTACCAAGGCATGCGCAGATTTGTaGGCGCTCATCTTGGTGAAACCCACAATGTCTGCA +
Preference number: 6 (lower is better)
Translates to: SLSRPTKACADL*ALILVKPTMSA
Trigger: TGCAGACATTGTGGGTTTCACCAAGATGAGCGCCAACAAATCTGCGCATGCCTTGGTAGGCCTACTCAATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp AGGTCATTGAGTAGGCCTACCAAGGCATGCGCAGATTaGTTGGCGCTCATCTTGGTGAAACCCACAATGTCT +
Preference number: 6 (lower is better)
Translates to: RSLSRPTKACAD*LALILVKPTMS
Trigger: AGACATTGTGGGTTTCACCAAGATGAGCGCCAACAAATCTGCGCATGCCTTGGTAGGCCTACTCAATGACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp CTTGGTGCTGGTCTTAGGCTCGTCTTGACAGCCATTTaGCACAGTTCCTCCTTCTGCACCAGCTTCAGATTT +
Preference number: 6 (lower is better)
Translates to: LGAGLRLVLTAI*HSSSFCTSFRF
Trigger: AAATCTGAAGCTGGTGCAGAAGGAGGAACTGTGCAAAATGGCTGTCAAGACGAGCCTAAGACCAGCACCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 90 bp TTTCAGGGCTTTCTCTACTTCCAGATCTTTGCCGTGCATAATGGATaGTCCCACCTTGAGAAAGGTGCTCCTGGACCTCACCTGAGACAT +
Preference number: 6 (lower is better)
Translates to: FQGFLYFQIFAVHNG*SHLEKGAPGPHLRH
Trigger: ATGTCTCAGGTGAGGTCCAGGAGCACCTTTCTCAAGGTGGGACAATCCATTATGCACGGCAAAGATCTGGAAGTAGAGAAAGCCCTGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 90 bp CGACCGAACAGGTCATTGAGTAGGCCTACCAAGGCATGCGCAGATTaGTTGGCGCTCATCTTGGTGAAACCCACAATGTCTGCAAATAAA +
Preference number: 6 (lower is better)
Translates to: RPNRSLSRPTKACAD*LALILVKPTMSANK
Trigger: TTTATTTGCAGACATTGTGGGTTTCACCAAGATGAGCGCCAACAAATCTGCGCATGCCTTGGTAGGCCTACTCAATGACCTGTTCGGTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 90 bp CCGTGGTTAAAGCCGACCCTGAGCTTGAAGTTGAACCATAACATATaGTTGTTGAAGTCATCCACCACGCGCATCATCTCCTTGGCGAAC +
Preference number: 6 (lower is better)
Translates to: PWLKPTLSLKLNHNI*LLKSSTTRIISLAN
Trigger: GTTCGCCAAGGAGATGATGCGCGTGGTGGATGACTTCAACAACAATATGTTATGGTTCAACTTCAAGCTCAGGGTCGGCTTTAACCACGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 72 bp ATTCTTTATGACCTCTTCCTGGTAGCTGGTTCTATATaGTCGCTCCAGCTCCTGGTCCAGGAAGTTCAGGCT +
Preference number: 6 (lower is better)
Translates to: ILYDLFLVAGSI*SLQLLVQEVQA
Trigger: AGCCTGAACTTCCTGGACCAGGAGCTGGAGCGATCATATAGAACCAGCTACCAGGAAGAGGTCATAAAGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS TCA 72 bp TTGGGTAAAGGTAGGTCTTCATCTGCCCTTTCCCCTTaGCATTCACGGTCCCTCGGTAGTCAAAGTCATAAC +
Preference number: 6 (lower is better)
Translates to: LGKGRSSSALSP*HSRSLGSQSHN
Trigger: GTTATGACTTTGACTACCGAGGGACCGTGAATGTCAAGGGGAAAGGGCAGATGAAGACCTACCTTTACCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 72 bp CTCGTCTTGACAGCCATTTTGCACAGTTCCTCCTTCTaGACCAGCTTCAGATTTGGGAGCAAATGTGATTCC +
Preference number: 6 (lower is better)
Translates to: LVLTAILHSSSF*TSFRFGSKCDS
Trigger: GGAATCACATTTGCTCCCAAATCTGAAGCTGGTGCAGAAGGAGGAACTGTGCAAAATGGCTGTCAAGACGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp TTTCTCTACTTCCAGATCTTTGCCGTGCATAATGGATaGTCCCACCTTGAGAAAGGTGCTCCTGGACCTCAC +
Preference number: 6 (lower is better)
Translates to: FLYFQIFAVHNG*SHLEKGAPGPH
Trigger: GTGAGGTCCAGGAGCACCTTTCTCAAGGTGGGACAATCCATTATGCACGGCAAAGATCTGGAAGTAGAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp CCACAAGAAGGGCAAGTCTTAAGGTTATCAAAGGTTTaGACAGTCTGCGCCAAATCACTGACACTCCCTGGC +
Preference number: 6 (lower is better)
Translates to: PQEGQVLRLSKV*TVCAKSLTLPG
Trigger: GCCAGGGAGTGTCAGTGATTTGGCGCAGACTGTCAAAACCTTTGATAACCTTAAGACTTGCCCTTCTTGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 90 bp TGGTTAAAGCCGACCCTGAGCTTGAAGTTGAACCATAACATATTGTaGTTGAAGTCATCCACCACGCGCATCATCTCCTTGGCGAACTCG +
Preference number: 6 (lower is better)
Translates to: WLKPTLSLKLNHNIL*LKSSTTRIISLANS
Trigger: CGAGTTCGCCAAGGAGATGATGCGCGTGGTGGATGACTTCAACAACAATATGTTATGGTTCAACTTCAAGCTCAGGGTCGGCTTTAACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 90 bp GCCTCTTCTACTCCTATGTCTTCACAGCTGTCCTTTTCTATGGCTTaGCCAAATGGAAACCTTTCCTCTGCTTTGACTGGCTCTCTCCAG +
Preference number: 6 (lower is better)
Translates to: ASSTPMSSQLSFSMA*PNGNLSSALTGSLQ
Trigger: CTGGAGAGAGCCAGTCAAAGCAGAGGAAAGGTTTCCATTTGGCAAAGCCATAGAAAAGGACAGCTGTGAAGACATAGGAGTAGAAGAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 90 bp CCGAACAGGTCATTGAGTAGGCCTACCAAGGCATGCGCAGATTTGTaGGCGCTCATCTTGGTGAAACCCACAATGTCTGCAAATAAAATA +
Preference number: 6 (lower is better)
Translates to: PNRSLSRPTKACADL*ALILVKPTMSANKI
Trigger: TATTTTATTTGCAGACATTGTGGGTTTCACCAAGATGAGCGCCAACAAATCTGCGCATGCCTTGGTAGGCCTACTCAATGACCTGTTCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 90 bp AATGTGATTCCACAAGAAGGGCAAGTCTTAAGGTTATCAAAGGTTTaGACAGTCTGCGCCAAATCACTGACACTCCCTGGCGATGCTGTC +
Preference number: 6 (lower is better)
Translates to: NVIPQEGQVLRLSKV*TVCAKSLTLPGDAV
Trigger: GACAGCATCGCCAGGGAGTGTCAGTGATTTGGCGCAGACTGTCAAAACCTTTGATAACCTTAAGACTTGCCCTTCTTGTGGAATCACATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 90 bp TTAAAGCCGACCCTGAGCTTGAAGTTGAACCATAACATATTGTTGTaGAAGTCATCCACCACGCGCATCATCTCCTTGGCGAACTCGAAG +
Preference number: 6 (lower is better)
Translates to: LKPTLSLKLNHNILL*KSSTTRIISLANSK
Trigger: CTTCGAGTTCGCCAAGGAGATGATGCGCGTGGTGGATGACTTCAACAACAATATGTTATGGTTCAACTTCAAGCTCAGGGTCGGCTTTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 72 bp TCTTTCAGGGCTTTCTCTACTTCCAGATCTTTGCCGTaGATAATGGATTGTCCCACCTTGAGAAAGGTGCTC +
Preference number: 6 (lower is better)
Translates to: SFRAFSTSRSLP*IMDCPTLRKVL
Trigger: GAGCACCTTTCTCAAGGTGGGACAATCCATTATGCACGGCAAAGATCTGGAAGTAGAGAAAGCCCTGAAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 72 bp AATCTGCTGCATCTTAAAGGGGCGGAATGCTATCGGTaGCTTCTGTATGGAGGACTTCTTCTTCCTGTTCTT +
Preference number: 6 (lower is better)
Translates to: NLLHLKGAECYR*LLYGGLLLPVL
Trigger: AAGAACAGGAAGAAGAAGTCCTCCATACAGAAGGCACCGATAGCATTCCGCCCCTTTAAGATGCAGCAGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 72 bp CGCATGTTCACCATCTCTTTCTTCTCCTGGCAGAACTaGTCGATGGCTTTTATCATGCCTAAGCCCATTTCA +
Preference number: 6 (lower is better)
Translates to: RMFTISFFSWQN*SMAFIMPKPIS
Trigger: TGAAATGGGCTTAGGCATGATAAAAGCCATCGAGCAGTTCTGCCAGGAGAAGAAAGAGATGGTGAACATGCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 72 bp TCACCATCTCTTTCTTCTCCTGGCAGAACTGCTCGATaGCTTTTATCATGCCTAAGCCCATTTCAATGCAGC +
Preference number: 6 (lower is better)
Translates to: SPSLSSPGRTAR*LLSCLSPFQCS
Trigger: GCTGCATTGAAATGGGCTTAGGCATGATAAAAGCCATCGAGCAGTTCTGCCAGGAGAAGAAAGAGATGGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp ACCCTGAGCTTGAAGTTGAACCATAACATATTGTTGTaGAAGTCATCCACCACGCGCATCATCTCCTTGGCG +
Preference number: 6 (lower is better)
Translates to: TLSLKLNHNILL*KSSTTRIISLA
Trigger: CGCCAAGGAGATGATGCGCGTGGTGGATGACTTCAACAACAATATGTTATGGTTCAACTTCAAGCTCAGGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp AAGCCGACCCTGAGCTTGAAGTTGAACCATAACATATaGTTGTTGAAGTCATCCACCACGCGCATCATCTCC +
Preference number: 6 (lower is better)
Translates to: KPTLSLKLNHNI*LLKSSTTRIIS
Trigger: GGAGATGATGCGCGTGGTGGATGACTTCAACAACAATATGTTATGGTTCAACTTCAAGCTCAGGGTCGGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp AGGGGTCCGTGGTTAAAGCCGACCCTGAGCTTGAAGTaGAACCATAACATATTGTTGTTGAAGTCATCCACC +
Preference number: 6 (lower is better)
Translates to: RGPWLKPTLSLK*NHNILLLKSST
Trigger: GGTGGATGACTTCAACAACAATATGTTATGGTTCAACTTCAAGCTCAGGGTCGGCTTTAACCACGGACCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS GCA 72 bp CAATCACTTTGGATTTCATGTGGACAGCGAAATAGATaGTCCAGAGAAGGCAGGCGAAGCCCACATAAAAGA +
Preference number: 6 (lower is better)
Translates to: QSLWISCGQRNR*SREGRRSPHKR
Trigger: TCTTTTATGTGGGCTTCGCCTGCCTTCTCTGGAGCATCTATTTCGCTGTCCACATGAAATCCAAAGTGATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
CDS CAA 72 bp ATCCTCTCTTTCAGGGCTTTCTCTACTTCCAGATCTTaGCCGTGCATAATGGATTGTCCCACCTTGAGAAAG +
Preference number: 6 (lower is better)
Translates to: ILSFRAFSTSRS*PCIMDCPTLRK
Trigger: CTTTCTCAAGGTGGGACAATCCATTATGCACGGCAAAGATCTGGAAGTAGAGAAAGCCCTGAAAGAGAGGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp CCTACCAAGGCATGCGCAGATTTGTTGGCGCTCATCTaGGTGAAACCCACAATGTCTGCAAATAAAATACTG +
Preference number: 6 (lower is better)
Translates to: PTKACADLLALI*VKPTMSANKIL
Trigger: CAGTATTTTATTTGCAGACATTGTGGGTTTCACCAAGATGAGCGCCAACAAATCTGCGCATGCCTTGGTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp ACTCCTATGTCTTCACAGCTGTCCTTTTCTATGGCTTaGCCAAATGGAAACCTTTCCTCTGCTTTGACTGGC +
Preference number: 6 (lower is better)
Translates to: TPMSSQLSFSMA*PNGNLSSALTG
Trigger: GCCAGTCAAAGCAGAGGAAAGGTTTCCATTTGGCAAAGCCATAGAAAAGGACAGCTGTGAAGACATAGGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 90 bp TTGAGTAGGCCTACCAAGGCATGCGCAGATTTGTTGGCGCTCATCTaGGTGAAACCCACAATGTCTGCAAATAAAATACTGACTTCTTCA +
Preference number: 6 (lower is better)
Translates to: LSRPTKACADLLALI*VKPTMSANKILTSS
Trigger: TGAAGAAGTCAGTATTTTATTTGCAGACATTGTGGGTTTCACCAAGATGAGCGCCAACAAATCTGCGCATGCCTTGGTAGGCCTACTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CAA 72 bp TCCCATCTTCCATTTCATACCTGTCGTCTAAGTATTTaGCAGTGGCCTCAGATATGTGAACTTTGCCAGCCA +
Preference number: 6 (lower is better)
Translates to: SHLPFHTCRLSI*QWPQICELCQP
Trigger: TGGCTGGCAAAGTTCACATATCTGAGGCCACTGCAAAATACTTAGACGACAGGTATGAAATGGAAGATGGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8
CDS CCA 72 bp TTCATCAGGCTGTCTTCTTTGATGACATCAACAAAGTaGGCATCAGTTTTCTCACGGATGTTCTTGAACCTG +
Preference number: 6 (lower is better)
Translates to: FIRLSSLMTSTK*ASVFSRMFLNL
Trigger: CAGGTTCAAGAACATCCGTGAGAAAACTGATGCCCACTTTGTTGATGTCATCAAAGAAGACAGCCTGATGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005719.4
ENSMUST00000117801.8
ENSMUST00000120080.8