RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ADARB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052551

Ensembl transcript IDs: ENSMUST00000064473.13, ENSMUST00000123187.2, ENSMUST00000135574.8

Found 460 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCCCACTGCTGGAACCTGAGGAGCCACACACGTGCACCTTTCTACTaGACCAGAGATTATTCGGCGGGAATCGGGTCCCCTCCCCCTTCC +
Preference number: 1 (lower is better)
Translates to: AHCWNLRSHTRAPFY*TRDYSAGIGSPPPS
Trigger: GGAAGGGGGAGGGGACCCGATTCCCGCCGAATAATCTCTGGTCCAGTAGAAAGGTGCACGTGTGTGGCTCCTCAGGTTCCAGCAGTGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR GCA 90 bp TTGCTCGGGGTGGAGCTTCCTGCTCATTCGTTCTGCCACGCCCACTaGTGGAACCTGAGGAGCCACACACGTGCACCTTTCTACTGGACC +
Preference number: 1 (lower is better)
Translates to: LLGVELPAHSFCHAH*WNLRSHTRAPFYWT
Trigger: GGTCCAGTAGAAAGGTGCACGTGTGTGGCTCCTCAGGTTCCAGCAGTGGGCGTGGCAGAACGAATGAGCAGGAAGCTCCACCCCGAGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR CCA 90 bp CTCGGGGTGGAGCTTCCTGCTCATTCGTTCTGCCACGCCCACTGCTaGAACCTGAGGAGCCACACACGTGCACCTTTCTACTGGACCAGA +
Preference number: 1 (lower is better)
Translates to: LGVELPAHSFCHAHC*NLRSHTRAPFYWTR
Trigger: TCTGGTCCAGTAGAAAGGTGCACGTGTGTGGCTCCTCAGGTTCCAGCAGTGGGCGTGGCAGAACGAATGAGCAGGAAGCTCCACCCCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR CCA 90 bp GTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATaGATGGCTGTAAGCTGCCGTGTGGAAGCTGGGAACTCAACCAGA +
Preference number: 1 (lower is better)
Translates to: VGALHGCVELLGLEL*MAVSCRVEAGNSTR
Trigger: TCTGGTTGAGTTCCCAGCTTCCACACGGCAGCTTACAGCCATCCATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR CCA 90 bp CTGCAGGTGAATGAGCGTGCTTACATGTCCTCGTGGCCTTTACCGTaGGGCTGGATCCTGTGGGAGGCTTCACAAATGATCAGACGCTGG +
Preference number: 1 (lower is better)
Translates to: LQVNERAYMSSWPLP*GWILWEASQMIRRW
Trigger: CCAGCGTCTGATCATTTGTGAAGCCTCCCACAGGATCCAGCCCCACGGTAAAGGCCACGAGGACATGTAAGCACGCTCATTCACCTGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR CCA 90 bp CCACCCGAACACACAGGGAACGTCCTCCACGAGCAGCAGTCTCCCTaGCACTTCACTTCTCTCGGATATACCAGGGGATCGGAACAAAGT +
Preference number: 1 (lower is better)
Translates to: PPEHTGNVLHEQQSP*HFTSLGYTRGSEQS
Trigger: ACTTTGTTCCGATCCCCTGGTATATCCGAGAGAAGTGAAGTGCCAGGGAGACTGCTGCTCGTGGAGGACGTTCCCTGTGTGTTCGGGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR CCA 90 bp ACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCCGTTCTCCATaGCTTCTCTCTGGTGGCTTCCACCTATGTCATTTTGCGTCTGTT +
Preference number: 1 (lower is better)
Translates to: TWGWEELYGTMLRSP*LLSGGFHLCHFASV
Trigger: AACAGACGCAAAATGACATAGGTGGAAGCCACCAGAGAGAAGCCATGGAGAACGGAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR GCA 90 bp CCGTTCTCCATGGCTTCTCTCTGGTGGCTTCCACCTATGTCATTTTaGGTCTGTTTCCTTATTTCCCCACATCACTCATCACCTTCATAC +
Preference number: 1 (lower is better)
Translates to: PFSMASLWWLPPMSF*VCFLISPHHSSPSY
Trigger: GTATGAAGGTGATGAGTGATGTGGGGAAATAAGGAAACAGACGCAAAATGACATAGGTGGAAGCCACCAGAGAGAAGCCATGGAGAACGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR CCA 90 bp AACTCAGTGGTTAAAAGCATCTTCCAGAGAACCCATTTGGCTTCCTaGCACCCACACAGGGTATCTCACAACTGCGTAAGACTCTCACTT +
Preference number: 1 (lower is better)
Translates to: NSVVKSIFQRTHLAS*HPHRVSHNCVRLSL
Trigger: AAGTGAGAGTCTTACGCAGTTGTGAGATACCCTGTGTGGGTGCCAGGAAGCCAAATGGGTTCTCTGGAAGATGCTTTTAACCACTGAGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR TCA 90 bp ACTGCTTTCTCTGACTCTTGCATAGGCCAAAGTGATGGTATTCTCTaGGAATATCTGAAAGGTACCCCACTCTGCCTCCTTCCATCTTGT +
Preference number: 1 (lower is better)
Translates to: TAFSDSCIGQSDGIL*EYLKGTPLCLLPSC
Trigger: ACAAGATGGAAGGAGGCAGAGTGGGGTACCTTTCAGATATTCTCAGAGAATACCATCACTTTGGCCTATGCAAGAGTCAGAGAAAGCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR TCA 90 bp AGGGGCAGCACATATATGACCCAACATGGTATAGATGTGGAATCCTaGTGTTGCTACCTTTCTGCTTCAGATAATCAATGTACCCTGGCC +
Preference number: 1 (lower is better)
Translates to: RGSTYMTQHGIDVES*CCYLSASDNQCTLA
Trigger: GGCCAGGGTACATTGATTATCTGAAGCAGAAAGGTAGCAACATCAGGATTCCACATCTATACCATGTTGGGTCATATATGTGCTGCCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR CCA 90 bp AACAATACAGCATTCCTGTTGGGTTCTTTGGAGTTGGGGAGCCCCTaGCTTTCCTGTTCACCTGTGGCTTATCTTGAAATGTCATATAAA +
Preference number: 1 (lower is better)
Translates to: NNTAFLLGSLELGSP*LSCSPVAYLEMSYK
Trigger: TTTATATGACATTTCAAGATAAGCCACAGGTGAACAGGAAAGCCAGGGGCTCCCCAACTCCAAAGAACCCAACAGGAATGCTGTATTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR TCA 90 bp ATTCTGAAAACTGTCCTAGATAAGAGTGATGGAGAAACATTTTGCTaGATGCTGAGACTTCGTCAGGAAGCAGTGGTCACAGCAGTCAAA +
Preference number: 1 (lower is better)
Translates to: ILKTVLDKSDGETFC*MLRLRQEAVVTAVK
Trigger: TTTGACTGCTGTGACCACTGCTTCCTGACGAAGTCTCAGCATTCAGCAAAATGTTTCTCCATCACTCTTATCTAGGACAGTTTTCAGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR TCA 90 bp GTGCTGAAAATTAGCTGGGCACTGCTGGGAAAGATTTCTTTAAATTaGTTCACAGACTTCTGGCTGATAGAAATTGGGTGCCCATGTGAA +
Preference number: 1 (lower is better)
Translates to: VLKISWALLGKISLN*FTDFWLIEIGCPCE
Trigger: TTCACATGGGCACCCAATTTCTATCAGCCAGAAGTCTGTGAATCAATTTAAAGAAATCTTTCCCAGCAGTGCCCAGCTAATTTTCAGCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR GCA 90 bp TATTTTAACTTTATGTCTATGATAATTTGCCCACATTTATGTAGGTaGACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGGAT +
Preference number: 1 (lower is better)
Translates to: YFNFMSMIICPHLCR*TAWMCGAAGAGVMD
Trigger: ATCCATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAATTATCATAGACATAAAGTTAAAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR TCA 90 bp GACAGTGTCTGTCTCAAGTTCTTCTTGAAAGAAGTTGGAAAGGTCTaGATGAATAATGAGAACAATACAGCATTCCTGTTGGGTTCTTTG +
Preference number: 1 (lower is better)
Translates to: DSVCLKFFLKEVGKV*MNNENNTAFLLGSL
Trigger: CAAAGAACCCAACAGGAATGCTGTATTGTTCTCATTATTCATTCAGACCTTTCCAACTTCTTTCAAGAAGAACTTGAGACAGACACTGTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CCA 90 bp TGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGGATGGCTGTAAGCACTGCATGGATGTGTaGAGCTGCTGGGGCTGGAGT +
Preference number: 2 (lower is better)
Translates to: CTAWMCGAAGAGVMDGCKHCMDV*SCWGWS
Trigger: ACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTG...CTTACAGCCATCCATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CCA 90 bp GGGGATCGGAACAAAGTGGGCAGATGTTTAGCAGGAGGGAAGCACAGCAAGGTGTACAAGTCAGAACCGTaGACAAAGCCCAGGGGTCAC +
Preference number: 2 (lower is better)
Translates to: GDRNKVGRCLAGGKHSKVYKSEP*TKPRGH
Trigger: GTGACCCCTGGGCTTTGTCCACGGTTCTGACTTGTA...CACCTTGCTGTGCTTCCCTCCTGCTAAACATCTGCCCACTTTGTTCCGATCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR TCA 90 bp TCCTCCACGAGCAGCAGTCTCCCTGGCACTTCACTTCTCTCGGATATACCAGGGCATTTTGCTGAATGCTaGGACTTCGTCAGGAAGCAG +
Preference number: 2 (lower is better)
Translates to: SSTSSSLPGTSLLSDIPGHFAEC*DFVRKQ
Trigger: CTGCTTCCTGACGAAGTCTCAGCATTCAGCAAAATG...CCCTGGTATATCCGAGAGAAGTGAAGTGCCAGGGAGACTGCTGCTCGTGGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR TCA 90 bp CTTTTGCTGCAGGTGAATGAGCGTGCTTACATGTCCTCGTGGCCTTTACCGTGGAGCCACTGCTTTCTCTaGCTCTTGCATAGGCCAAAG +
Preference number: 2 (lower is better)
Translates to: LLLQVNERAYMSSWPLPWSHCFL*LLHRPK
Trigger: CTTTGGCCTATGCAAGAGTCAGAGAAAGCAGTGGCT...CCACGGTAAAGGCCACGAGGACATGTAAGCACGCTCATTCACCTGCAGCAAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR-3UTR GCA 90 bp TGGTTAAAAGCATCTTCCAGAGAACCCATTTGGCTTCCTGGCACCCACACAGGGATGGATGTGTGGAGCTaGTGGGGCTGGAGTTATGGA +
Preference number: 2 (lower is better)
Translates to: WLKASSREPIWLPGTHTGMDVWS*WGWSYG
Trigger: TCCATAACTCCAGCCCCAGCAGCTCCACACATCCAT...CCCTGTGTGGGTGCCAGGAAGCCAAATGGGTTCTCTGGAAGATGCTTTTAACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR-3UTR GCA 90 bp ATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTATGGATGTGTGGAGCTaGTGGGGCTGGAGTTATGGA +
Preference number: 2 (lower is better)
Translates to: ICPHLCRCTAWMCGAAGAMDVWS*WGWSYG
Trigger: TCCATAACTCCAGCCCCAGCAGCTCCACACATCCAT...AGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR GCA 90 bp CTTTTGCTGCAGGTGAATGAGCGTGCTTACATGTCCTCGTGGCCTTTACCGTGGGTACACCAGATGCTATaGCAGATTTGGTGGCTGGCT +
Preference number: 2 (lower is better)
Translates to: LLLQVNERAYMSSWPLPWVHQML*QIWWLA
Trigger: AGCCAGCCACCAAATCTGGCATAGCATCTGGTGTAC...CCACGGTAAAGGCCACGAGGACATGTAAGCACGCTCATTCACCTGCAGCAAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR-3UTR CCA 90 bp AAGCTGGGAACTCAACCAGAGTCCTCTATAGAAGCAGCAAAGCTCCTAACTGCTTCCTGTTGGGTTCTTTaGAGTTGGGGAGCCCCTGGC +
Preference number: 2 (lower is better)
Translates to: KLGTQPESSIEAAKLLTASCWVL*SWGAPG
Trigger: GCCAGGGGCTCCCCAACTCCAAAGAACCCAACAGGA...AGCAGTTAGGAGCTTTGCTGCTTCTATAGAGGACTCTGGTTGAGTTCCCAGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CCA 90 bp CCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATCTGATCTTGCTCCGGTaGTTTTCTCACCCAGGTGCC +
Preference number: 2 (lower is better)
Translates to: PVRDGADTTKLLSLAMVDLILLR*FSHPGA
Trigger: GGCACCTGGGTGAGAAAACCACCGGAGCAAGATCAG...ATCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000123187.2
3UTR-3UTR TCA 90 bp CAGCCCGACCCAAACTCAAACCTAGTCTCTCATCCACACATGGAGCCACATGTTACAAAGGTCAAGAACTaGTGGACACACCACACCATC +
Preference number: 2 (lower is better)
Translates to: QPDPNSNLVSHPHMEPHVTKVKN*WTHHTI
Trigger: GATGGTGTGGTGTGTCCATCAGTTCTTGACCTTTGT...AACATGTGGCTCCATGTGTGGATGAGAGACTAGGTTTGAGTTTGGGTCGGGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR TCA 90 bp GTCTGTTTCCTTATTTCCCCACATCACTCATCACCTTCATACTTTGAGGAAGAACCCACTGCTGGAACCTaGGGAGCCACACACGTGCAC +
Preference number: 2 (lower is better)
Translates to: VCFLISPHHSSPSYFEEEPTAGT*GATHVH
Trigger: GTGCACGTGTGTGGCTCCTCAGGTTCCAGCAGTGGG...TTCTTCCTCAAAGTATGAAGGTGATGAGTGATGTGGGGAAATAAGGAAACAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR CCA 90 bp CTGTGCCTAACCGTTGAAGGATTACAGCTAAGCCATATTCAGCTCTCAAGGTTTCACTGCATGGATGTGTaGAGCTGCTGGGGCTGGAGT +
Preference number: 2 (lower is better)
Translates to: LCLTVEGLQLSHIQLSRFHCMDV*SCWGWS
Trigger: ACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTG...AAACCTTGAGAGCTGAATATGGCTTAGCTGTAATCCTTCAACGGTTAGGCACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR-3UTR CCA 90 bp CTTTTGCTGCAGGTGAATGAGCGTGCTTACATGTCCTCGTGGCCTTTACCGTGGAAGAAACAGCCAAGCTaGCTAAGATGCCTGAATGTC +
Preference number: 2 (lower is better)
Translates to: LLLQVNERAYMSSWPLPWKKQPS*LRCLNV
Trigger: GACATTCAGGCATCTTAGCCAGCTTGGCTGTTTCTT...CCACGGTAAAGGCCACGAGGACATGTAAGCACGCTCATTCACCTGCAGCAAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR-3UTR CCA 90 bp AATACCACAGTCTGCGCCCATGTTTCCTCTAACAACATTATATCATTCCTCCACTGCCACGCCCACTGCTaGAACCTGAGGAGCCACACA +
Preference number: 2 (lower is better)
Translates to: NTTVCAHVSSNNIISFLHCHAHC*NLRSHT
Trigger: TGTGTGGCTCCTCAGGTTCCAGCAGTGGGCGTGGCA...GTGGAGGAATGATATAATGTTGTTAGAGGAAACATGGGCGCAGACTGTGGTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR CCA 90 bp AATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCCGTCCATGGCTTCTCTCTaGTGGCTTCCACCTATGTCA +
Preference number: 2 (lower is better)
Translates to: NCGGNDLGMGGTVWNNAPSMASL*WLPPMS
Trigger: TGACATAGGTGGAAGCCACCAGAGAGAAGCCATGGA...CGGAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR TCA 90 bp CCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATACAAAGGTCAAGAACTaGTGGACACACCACACCATC +
Preference number: 2 (lower is better)
Translates to: PVRDGADTTKLLSLAMVDTKVKN*WTHHTI
Trigger: GATGGTGTGGTGTGTCCATCAGTTCTTGACCTTTGT...ATCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR TCA 90 bp GTGGTTAAAAGCATCTTCCAGAGAACCCATTTGGCTTCCTGGCACCCACACAGGCATGTTCCTGAACAGTaGAGGAGAACAAAGGTCAAG +
Preference number: 2 (lower is better)
Translates to: VVKSIFQRTHLASWHPHRHVPEQ*RRTKVK
Trigger: CTTGACCTTTGTTCTCCTTCACTGTTCAGGAACATG...CCTGTGTGGGTGCCAGGAAGCCAAATGGGTTCTCTGGAAGATGCTTTTAACCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR-3UTR TCA 90 bp GTGGTTAAAAGCATCTTCCAGAGAACCCATTTGGCTTCCTGGCACCCACACAGGCAGAGAATTTCCTTTTaGTACCCAGTAAGGGATGGG +
Preference number: 2 (lower is better)
Translates to: VVKSIFQRTHLASWHPHRQRISF*YPVRDG
Trigger: CCCATCCCTTACTGGGTATCAAAAGGAAATTCTCTG...CCTGTGTGGGTGCCAGGAAGCCAAATGGGTTCTCTGGAAGATGCTTTTAACCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR-3UTR TCA 90 bp TACCCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGCTGGACTCCCTTGCCTaGACAGAGAATTTCCTTTTG +
Preference number: 2 (lower is better)
Translates to: YPVRDGADTTKLLSLAMVLDSLA*TENFLL
Trigger: CAAAAGGAAATTCTCTGTTCAGGCAAGGGAGTCCAG...CACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR GCA 90 bp ATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTAGCTTTCACTTTGGCTaGTCTTTGACAGTGTCTGTC +
Preference number: 2 (lower is better)
Translates to: ICPHLCRCTAWMCGAAGASFHFG*SLTVSV
Trigger: GACAGACACTGTCAAAGAGCAGCCAAAGTGAAAGCT...AGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CCA 90 bp TCTATGATAATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGAGTTGGGGAGCCCCTaGCTTTCCTGTTCACCTGTG +
Preference number: 2 (lower is better)
Translates to: SMIICPHLCRCTAWMCGAELGSP*LSCSPV
Trigger: CACAGGTGAACAGGAAAGCCAGGGGCTCCCCAACTC...AGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAATTATCATAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CCA 90 bp ATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTATACAGCATTCCTGTTaGGTTCTTTGGAGTTGGGGA +
Preference number: 2 (lower is better)
Translates to: ICPHLCRCTAWMCGAAGAIQHSC*VLWSWG
Trigger: TCCCCAACTCCAAAGAACCCAACAGGAATGCTGTAT...AGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CCA 90 bp TGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGGATGGCTGTAAGTCAAGTGGAAAGGCTTaGGTTTGTTTGCAACATACT +
Preference number: 2 (lower is better)
Translates to: CTAWMCGAAGAGVMDGCKSSGKA*VCLQHT
Trigger: AGTATGTTGCAAACAAACCCAAGCCTTTCCACTTGA...CTTACAGCCATCCATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR TCA 90 bp CCCCACATCACTCATCACCTTCATACTTTGAGGAAGAAGTTTAACAAGAGCCACGCTGGGACAGCACTTTaGGTTCTCCACTCCTTCATG +
Preference number: 2 (lower is better)
Translates to: PHITHHLHTLRKKFNKSHAGTAL*VLHSFM
Trigger: CATGAAGGAGTGGAGAACTCAAAGTGCTGTCCCAGC...GTGGCTCTTGTTAAACTTCTTCCTCAAAGTATGAAGGTGATGAGTGATGTGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR CCA 90 bp TCTATGATAATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTCTGCCGTGTGGAAGCTaGGAACTCAACCAGAGTCCT +
Preference number: 2 (lower is better)
Translates to: SMIICPHLCRCTAWMCGALPCGS*ELNQSP
Trigger: AGGACTCTGGTTGAGTTCCCAGCTTCCACACGGCAG...AGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAATTATCATAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CCA 90 bp GTCTGTTTCCTTATTTCCCCACATCACTCATCACCTTCATACTTTGAGGAAGAACCTGCTTGCTCGGGGTaGAGCTTCCTGCTCATTCGT +
Preference number: 2 (lower is better)
Translates to: VCFLISPHHSSPSYFEEEPACSG*SFLLIR
Trigger: ACGAATGAGCAGGAAGCTCCACCCCGAGCAAGCAGG...TTCTTCCTCAAAGTATGAAGGTGATGAGTGATGTGGGGAAATAAGGAAACAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR CCA 90 bp TTCTGGCTGATAGAAATTGGGTGCCCATGTGAAAGAGGCACTAGAATTCAGATAGGAAGCACAGCAAGGTaGTGGTGGGAAGGGAGAAGT +
Preference number: 2 (lower is better)
Translates to: FWLIEIGCPCERGTRIQIGSTAR*WWEGRS
Trigger: ACTTCTCCCTTCCCACCACCACCTTGCTGTGCTTCC...TATCTGAATTCTAGTGCCTCTTTCACATGGGCACCCAATTTCTATCAGCCAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR TCA 90 bp CATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGGTCTCAAGTTCTTCTTaGAAGAAGTTGGAAAGGTCT +
Preference number: 2 (lower is better)
Translates to: HLCRCTAWMCGAAGAGVMVSSSS*KKLERS
Trigger: AGACCTTTCCAACTTCTTTCAAGAAGAACTTGAGAC...CATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CCA 90 bp TTCCTGAACAGTGAAGGAGAACAAAGGTCAAGAACTGATGGACACACCACACCATCTCTCATCCACACATaGAGCCACATGTTCCTGAAC +
Preference number: 2 (lower is better)
Translates to: FLNSEGEQRSRTDGHTTPSLIHT*SHMFLN
Trigger: GTTCAGGAACATGTGGCTCCATGTGTGGATGAGAGA...TGGTGTGGTGTGTCCATCAGTTCTTGACCTTTGTTCTCCTTCACTGTTCAGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CCA 90 bp TGGGTAGTGGTTAATCACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATTGGGTTCTTTGGAGTTaGGGAGCCCCTGGCTTTCCT +
Preference number: 2 (lower is better)
Translates to: WVVVNHPTVVTSVAIIIYWVLWS*GAPGFP
Trigger: AGGAAAGCCAGGGGCTCCCCAACTCCAAAGAACCCA...ATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGTGATTAACCACTACCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR CAA 90 bp ATGAATAATGAGAACAATACAGCATTCCTGTTGGGTTCTTTGGAGTaGGGGAGCCCCTGGCTTTCCTGTTCACCTGTGGCTTATCTTGAA +
Preference number: 2 (lower is better)
Translates to: MNNENNTAFLLGSLE*GSPWLSCSPVAYLE
Trigger: TTCAAGATAAGCCACAGGTGAACAGGAAAGCCAGGGGCTCCCCAACTCCAAAGAACCCAACAGGAATGCTGTATTGTTCTCATTATTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR TCA 90 bp TCTATGATAATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTAGTAAGGGATGGGGCTaGCACAACAAAGCTTCTCTC +
Preference number: 2 (lower is better)
Translates to: SMIICPHLCRCTAWMCGASKGWG*HNKASL
Trigger: GAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACT...AGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAATTATCATAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR TCA 90 bp TGGTTAAAAGCATCTTCCAGAGAACCCATTTGGCTTCCTGGCACCCACACAGGGCTCTATAAACAAATTTaGTCCCCTAGTCTCTTAGGA +
Preference number: 2 (lower is better)
Translates to: WLKASSREPIWLPGTHTGLYKQI*SPSLLG
Trigger: TCCTAAGAGACTAGGGGATCAAATTTGTTTATAGAG...CCCTGTGTGGGTGCCAGGAAGCCAAATGGGTTCTCTGGAAGATGCTTTTAACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR-3UTR CCA 90 bp ACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATAAAAGCAATGGAGAGGTTTCAGTCCTGCCTCTaGACTCCCTTGCCTGAACAG +
Preference number: 2 (lower is better)
Translates to: TLQLSLLWLSLSIKAMERFQSCL*TPLPEQ
Trigger: CTGTTCAGGCAAGGGAGTCCAGAGGCAGGACTGAAA...CCTCTCCATTGCTTTTATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CCA 90 bp CATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGTTTCCTGTTCACCTGTaGCTTATCTTGAAATGTCAT +
Preference number: 2 (lower is better)
Translates to: HLCRCTAWMCGAAGAGVMFPVHL*LILKCH
Trigger: ATGACATTTCAAGATAAGCCACAGGTGAACAGGAAA...CATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR GCA 90 bp TGTTCACCTGTGGCTTATCTTGAAATGTCATATAAACTTGTGCTGGTGAGACTTACTACCTTTCAGTCCTaGCTCTGGACTCCCTTGCCT +
Preference number: 2 (lower is better)
Translates to: CSPVAYLEMSYKLVLVRLTTFQS*LWTPLP
Trigger: AGGCAAGGGAGTCCAGAGGCAGGACTGAAAGGTAGT...AAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGCCACAGGTGAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR GCA 90 bp AGAATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCCCACCTATGTCATTTTaGGTCTGTTTCCTTATTTCC +
Preference number: 2 (lower is better)
Translates to: RIVGEMTWGWEELYGTMLPPMSF*VCFLIS
Trigger: GGAAATAAGGAAACAGACGCAAAATGACATAGGTGG...GAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR TCA 90 bp TATAAAAGCAATGGAGAGGTTGTCATCAAGTGGAAAGGCTTGGGTTTGTTTGCAGGAGCCACATGTTCCTaGACAGTGAAGGAGAACAAA +
Preference number: 2 (lower is better)
Translates to: YKSNGEVVIKWKGLGLFAGATCS*TVKENK
Trigger: TTTGTTCTCCTTCACTGTTCAGGAACATGTGGCTCC...TGCAAACAAACCCAAGCCTTTCCACTTGATGACAACCTCTCCATTGCTTTTATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR TCA 90 bp TTCTGGCTGATAGAAATTGGGTGCCCATGTGAAAGAGGCACTAGAATTCAGATAGGAGAAACATTTTGCTaGATGCTGAGACTTCGTCAG +
Preference number: 2 (lower is better)
Translates to: FWLIEIGCPCERGTRIQIGETFC*MLRLRQ
Trigger: CTGACGAAGTCTCAGCATTCAGCAAAATGTTTCTCC...TATCTGAATTCTAGTGCCTCTTTCACATGGGCACCCAATTTCTATCAGCCAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR GCA 90 bp GTCTGTTTCCTTATTTCCCCACATCACTCATCACCTTCATACTTTGAGGAAGAATGGTGCTATAGCCTTTaGTGGGACAGCACTTTGAGT +
Preference number: 2 (lower is better)
Translates to: VCFLISPHHSSPSYFEEEWCYSL*WDSTLS
Trigger: ACTCAAAGTGCTGTCCCAGCAAAGGCTATAGCACCA...TTCTTCCTCAAAGTATGAAGGTGATGAGTGATGTGGGGAAATAAGGAAACAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR CCA 90 bp ACACTCACTTATCAGGTATCACCAAAGTGCAATTTACAGAACTTAGAAGAGGCAACAGCAAGGTGGTGGTaGGAAGGGAGAAGTGAATCT +
Preference number: 2 (lower is better)
Translates to: TLTYQVSPKCNLQNLEEATARWW*EGRSES
Trigger: AGATTCACTTCTCCCTTCCCACCACCACCTTGCTGT...TGCCTCTTCTAAGTTCTGTAAATTGCACTTTGGTGATACCTGATAAGTGAGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR CCA 90 bp ACTCACTTATCAGGTATCACCAAAGTGCAATTTACAGAACTTAGAAGAGGCAAAAGCACAGCAAGGTGGTaGTGGGAAGGGAGAAGTGAA +
Preference number: 2 (lower is better)
Translates to: THLSGITKVQFTELRRGKSTARW*WEGRSE
Trigger: TTCACTTCTCCCTTCCCACCACCACCTTGCTGTGCT...TTTGCCTCTTCTAAGTTCTGTAAATTGCACTTTGGTGATACCTGATAAGTGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR CCA 90 bp TGGGTAGTGGTTAATCACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATATACAGCATTCCTGTTaGGTTCTTTGGAGTTGGGGA +
Preference number: 2 (lower is better)
Translates to: WVVVNHPTVVTSVAIIIYIQHSC*VLWSWG
Trigger: TCCCCAACTCCAAAGAACCCAACAGGAATGCTGTAT...ATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGTGATTAACCACTACCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR TCA 90 bp TTGTCTTGTAGCATTAAAGAATTCTTTTACCTCTACAAACAAATGTGGATCCCCAGTAAGGGATGGGGCTaGCACAACAAAGCTTCTCTC +
Preference number: 2 (lower is better)
Translates to: LSCSIKEFFYLYKQMWIPSKGWG*HNKASL
Trigger: GAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACT...GGGGATCCACATTTGTTTGTAGAGGTAAAAGAATTCTTTAATGCTACAAGACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR-3UTR TCA 90 bp TGGGTAGTGGTTAATCACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATAGACTTAGTAGAAACTaGTCTTGCTCCGGTGGTTTT +
Preference number: 2 (lower is better)
Translates to: WVVVNHPTVVTSVAIIIYRLSRN*SCSGGF
Trigger: AAAACCACCGGAGCAAGATCAGTTTCTACTAAGTCT...ATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGTGATTAACCACTACCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123187.2
3UTR-3UTR GCA 90 bp TATAAAAGCAATGGAGAGGTTGTCATCAAGTGGAAAGGCTTGGGTTTGTTTGCAAGGCTTGGGTTTGTTTaGAACATACTATCATTGGGC +
Preference number: 2 (lower is better)
Translates to: YKSNGEVVIKWKGLGLFARLGFV*NILSLG
Trigger: GCCCAATGATAGTATGTTGCAAACAAACCCAAGCCT...TGCAAACAAACCCAAGCCTTTCCACTTGATGACAACCTCTCCATTGCTTTTATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CCA 90 bp CCCCACATCACTCATCACCTTCATACTTTGAGGAAGAAGTTTAACAAGAGCCACGTAAACATCCAGAGCTaGGGTAGTTTTAGAAATGTT +
Preference number: 2 (lower is better)
Translates to: PHITHHLHTLRKKFNKSHVNIQS*GSFRNV
Trigger: AACATTTCTAAAACTACCCCAGCTCTGGATGTTTAC...GTGGCTCTTGTTAAACTTCTTCCTCAAAGTATGAAGGTGATGAGTGATGTGGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR TCA 90 bp TTGTCACTTCTGTGGCTATCATTATCTATAAAAGCAATGGAGAGGTTGTCATCACATGTTCCTGAACAGTaGAGGAGAACAAAGGTCAAG +
Preference number: 2 (lower is better)
Translates to: LSLLWLSLSIKAMERLSSHVPEQ*RRTKVK
Trigger: CTTGACCTTTGTTCTCCTTCACTGTTCAGGAACATG...TGATGACAACCTCTCCATTGCTTTTATAGATAATGATAGCCACAGAAGTGACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CCA 90 bp ACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATAAAAGCAATGGAGAGGTCAAGTGGAAAGGCTTaGGTTTGTTTGCAACATACT +
Preference number: 2 (lower is better)
Translates to: TLQLSLLWLSLSIKAMERSSGKA*VCLQHT
Trigger: AGTATGTTGCAAACAAACCCAAGCCTTTCCACTTGA...CCTCTCCATTGCTTTTATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CCA 90 bp AATACCACAGTCTGCGCCCATGTTTCCTCTAACAACATTATATCATTCCTCCACCCCTTCCTTCATAACTaGTGTCGCAACAATAAAATT +
Preference number: 2 (lower is better)
Translates to: NTTVCAHVSSNNIISFLHPFLHN*CRNNKI
Trigger: AATTTTATTGTTGCGACACCAGTTATGAAGGAAGGG...GTGGAGGAATGATATAATGTTGTTAGAGGAAACATGGGCGCAGACTGTGGTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR CAA 90 bp AAAGCAATGGAGAGGTTGTCATCAAGTGGAAAGGCTTGGGTTTGTTaGCAACATACTATCATTGGGCAGTTTAATAACAGTTTTCTTAGC +
Preference number: 2 (lower is better)
Translates to: KAMERLSSSGKAWVC*QHTIIGQFNNSFLS
Trigger: GCTAAGAAAACTGTTATTAAACTGCCCAATGATAGTATGTTGCAAACAAACCCAAGCCTTTCCACTTGATGACAACCTCTCCATTGCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR CAA 90 bp TTGTCACTTCTGTGGCTATCATTATCTATAAAAGCAATGGAGAGGTaGTCATCAAGTGGAAAGGCTTGGGTTTGTTTGCAACATACTATC +
Preference number: 2 (lower is better)
Translates to: LSLLWLSLSIKAMER*SSSGKAWVCLQHTI
Trigger: GATAGTATGTTGCAAACAAACCCAAGCCTTTCCACTTGATGACAACCTCTCCATTGCTTTTATAGATAATGATAGCCACAGAAGTGACAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CCA 90 bp TATAAAAGCAATGGAGAGGTTGTCATCAAGTGGAAAGGCTTGGGTTTGTTTGCATTTCCTGTTCACCTGTaGCTTATCTTGAAATGTCAT +
Preference number: 2 (lower is better)
Translates to: YKSNGEVVIKWKGLGLFAFPVHL*LILKCH
Trigger: ATGACATTTCAAGATAAGCCACAGGTGAACAGGAAA...TGCAAACAAACCCAAGCCTTTCCACTTGATGACAACCTCTCCATTGCTTTTATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR TCA 90 bp ACTCACTTATCAGGTATCACCAAAGTGCAATTTACAGAACTTAGAAGAGGCAAACGCAACAATAAAATTTaGGCCTTGATCAGAGTAACT +
Preference number: 2 (lower is better)
Translates to: THLSGITKVQFTELRRGKRNNKI*ALIRVT
Trigger: AGTTACTCTGATCAAGGCTCAAATTTTATTGTTGCG...TTTGCCTCTTCTAAGTTCTGTAAATTGCACTTTGGTGATACCTGATAAGTGAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR GCA 72 bp GAGCTGCTGGGGCTGGAGTTATGGATGGCTGTAAGCTaGCGTGTGGAAGCTGGGAACTCAACCAGAGTCCTC +
Preference number: 3 (lower is better)
Translates to: ELLGLELWMAVS*RVEAGNSTRVL
Trigger: GAGGACTCTGGTTGAGTTCCCAGCTTCCACACGGCAGCTTACAGCCATCCATAACTCCAGCCCCAGCAGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR CCA 72 bp CTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATaGATGGCTGTAAGCTGCCGTGTGGAAGCTGGGAAC +
Preference number: 3 (lower is better)
Translates to: LHGCVELLGLEL*MAVSCRVEAGN
Trigger: GTTCCCAGCTTCCACACGGCAGCTTACAGCCATCCATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR CCA 72 bp CACACAGGGAACGTCCTCCACGAGCAGCAGTCTCCCTaGCACTTCACTTCTCTCGGATATACCAGGGGATCG +
Preference number: 3 (lower is better)
Translates to: HTGNVLHEQQSP*HFTSLGYTRGS
Trigger: CGATCCCCTGGTATATCCGAGAGAAGTGAAGTGCCAGGGAGACTGCTGCTCGTGGAGGACGTTCCCTGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR CCA 72 bp TGGAACCTGAGGAGCCACACACGTGCACCTTTCTACTaGACCAGAGATTATTCGGCGGGAATCGGGTCCCCT +
Preference number: 3 (lower is better)
Translates to: WNLRSHTRAPFY*TRDYSAGIGSP
Trigger: AGGGGACCCGATTCCCGCCGAATAATCTCTGGTCCAGTAGAAAGGTGCACGTGTGTGGCTCCTCAGGTTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR CCA 72 bp TGCCAGATTTGGTGGCTGGCTACTTCTGGAGTGGGTTaGGTTTCTGCAGGTCAGGGGCAGCACATATATGAC +
Preference number: 3 (lower is better)
Translates to: CQIWWLATSGVG*VSAGQGQHIYD
Trigger: GTCATATATGTGCTGCCCCTGACCTGCAGAAACCCAACCCACTCCAGAAGTAGCCAGCCACCAAATCTGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR-3UTR CAA 90 bp GGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATGGGGTTCTTGGATGGTGGATGGGGTTCTaGGAACTAACAGCCCAGGGA +
Preference number: 3 (lower is better)
Translates to: GADTTKLLSLAMVDGVLGWWMGF*ELTAQG
Trigger: TCCCTGGGCTGTTAGTTCCAAGAACCCCATCCACCA...TCCAAGAACCCCATCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR CCA 72 bp TGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATaGAACAATGCTCCGTTCTCCATGGCTTCTCTCTGG +
Preference number: 3 (lower is better)
Translates to: CGGNDLGMGGTV*NNAPFSMASLW
Trigger: CCAGAGAGAAGCCATGGAGAACGGAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR CAA 90 bp AAGCTGGGAACTCAACCAGAGTCCTCTATAGAAGCAGCAAAGCTCCTAACTGCTTTCCTGTTGGGTTCTTaGGAGTTGGGGAGCCCCTGG +
Preference number: 3 (lower is better)
Translates to: KLGTQPESSIEAAKLLTAFLLGS*ELGSPW
Trigger: CCAGGGGCTCCCCAACTCCAAAGAACCCAACAGGAA...AGCAGTTAGGAGCTTTGCTGCTTCTATAGAGGACTCTGGTTGAGTTCCCAGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CAA 90 bp GGGGATCGGAACAAAGTGGGCAGATGTTTAGCAGGAGGGAAGCACAGCAAGGTGGCTACATTTCTTCTTTaGCCCCGTCTAGATTCCTCT +
Preference number: 3 (lower is better)
Translates to: GDRNKVGRCLAGGKHSKVATFLL*PRLDSS
Trigger: AGAGGAATCTAGACGGGGCAAAAGAAGAAATGTAGC...CACCTTGCTGTGCTTCCCTCCTGCTAAACATCTGCCCACTTTGTTCCGATCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR TCA 72 bp GGAAGAGAAGGGAGGGGAGGTCCAAAGGAAGATGCATaGAGCTACGCTTTAGTACTACCTTTCAGTCCTGCC +
Preference number: 3 (lower is better)
Translates to: GREGRGGPKEDA*SYALVLPFSPA
Trigger: GGCAGGACTGAAAGGTAGTACTAAAGCGTAGCTTCATGCATCTTCCTTTGGACCTCCCCTCCCTTCTCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR CCA 72 bp AGAACAATACAGCATTCCTGTTGGGTTCTTTGGAGTTaGGGAGCCCCTGGCTTTCCTGTTCACCTGTGGCTT +
Preference number: 3 (lower is better)
Translates to: RTIQHSCWVLWS*GAPGFPVHLWL
Trigger: AAGCCACAGGTGAACAGGAAAGCCAGGGGCTCCCCAACTCCAAAGAACCCAACAGGAATGCTGTATTGTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CAA 90 bp TGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGGATGGCTGTAAGACAGAGAATTTCCTTTaGATACCCAGTAAGGGATGG +
Preference number: 3 (lower is better)
Translates to: CTAWMCGAAGAGVMDGCKTENFL*IPSKGW
Trigger: CCATCCCTTACTGGGTATCAAAAGGAAATTCTCTGT...CTTACAGCCATCCATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR GCA 72 bp CCTTGGAAGAGAAGGGAGGGGAGGTCCAAAGGAAGATaGATGAAGCTACGCTTTAGTACTACCTTTCAGTCC +
Preference number: 3 (lower is better)
Translates to: PWKRREGRSKGR*MKLRFSTTFQS
Trigger: GGACTGAAAGGTAGTACTAAAGCGTAGCTTCATGCATCTTCCTTTGGACCTCCCCTCCCTTCTCTTCCAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CAA 90 bp ACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATAAAAGCAATGGAGAGGCCACTAGAGAGGCCCTaGGAAGAGAAGGGAGGGGAG +
Preference number: 3 (lower is better)
Translates to: TLQLSLLWLSLSIKAMERPLERP*EEKGGE
Trigger: CTCCCCTCCCTTCTCTTCCAAGGGCCTCTCTAGTGG...CCTCTCCATTGCTTTTATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CAA 90 bp CTTTTGCTGCAGGTGAATGAGCGTGCTTACATGTCCTCGTGGCCTTTACCGTGGAAGGCTTGGGTTTGTTaGCAACATACTATCATTGGG +
Preference number: 3 (lower is better)
Translates to: LLLQVNERAYMSSWPLPWKAWVC*QHTIIG
Trigger: CCCAATGATAGTATGTTGCAAACAAACCCAAGCCTT...CCACGGTAAAGGCCACGAGGACATGTAAGCACGCTCATTCACCTGCAGCAAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR GCA 72 bp TGCATGAAGCTACGCTTTAGTACTACCTTTCAGTCCTaGCTCTGGACTCCCTTGCCTGAACAGAGAATTTCC +
Preference number: 3 (lower is better)
Translates to: CMKLRFSTTFQS*LWTPLPEQRIS
Trigger: GGAAATTCTCTGTTCAGGCAAGGGAGTCCAGAGGCAGGACTGAAAGGTAGTACTAAAGCGTAGCTTCATGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR CCA 72 bp ATAATGAGAACAATACAGCATTCCTGTTGGGTTCTTTaGAGTTGGGGAGCCCCTGGCTTTCCTGTTCACCTG +
Preference number: 3 (lower is better)
Translates to: IMRTIQHSCWVL*SWGAPGFPVHL
Trigger: CAGGTGAACAGGAAAGCCAGGGGCTCCCCAACTCCAAAGAACCCAACAGGAATGCTGTATTGTTCTCATTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR CCA 72 bp GTTAAAAGCATCTTCCAGAGAACCCATTTGGCTTCCTaGCACCCACACAGGGTATCTCACAACTGCGTAAGA +
Preference number: 3 (lower is better)
Translates to: VKSIFQRTHLAS*HPHRVSHNCVR
Trigger: TCTTACGCAGTTGTGAGATACCCTGTGTGGGTGCCAGGAAGCCAAATGGGTTCTCTGGAAGATGCTTTTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR CCA 72 bp TTAGTTGTTTTCGTGTTCAACTACAAGTCAGAACCGTaGACAAAGCCCAGGGGTCACTCTGCTCCAAGCTCT +
Preference number: 3 (lower is better)
Translates to: LVVFVFNYKSEP*TKPRGHSAPSS
Trigger: AGAGCTTGGAGCAGAGTGACCCCTGGGCTTTGTCCACGGTTCTGACTTGTAGTTGAACACGAAAACAACTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR CCA 72 bp TGGAACAATGCTCCGTTCTCCATGGCTTCTCTCTGGTaGCTTCCACCTATGTCATTTTGCGTCTGTTTCCTT +
Preference number: 3 (lower is better)
Translates to: WNNAPFSMASLW*LPPMSFCVCFL
Trigger: AAGGAAACAGACGCAAAATGACATAGGTGGAAGCCACCAGAGAGAAGCCATGGAGAACGGAGCATTGTTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR CCA 72 bp GTATGGAACAATGCTCCGTTCTCCATGGCTTCTCTCTaGTGGCTTCCACCTATGTCATTTTGCGTCTGTTTC +
Preference number: 3 (lower is better)
Translates to: VWNNAPFSMASL*WLPPMSFCVCF
Trigger: GAAACAGACGCAAAATGACATAGGTGGAAGCCACCAGAGAGAAGCCATGGAGAACGGAGCATTGTTCCATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR CCA 72 bp TGGGAGGAACTGTATGGAACAATGCTCCGTTCTCCATaGCTTCTCTCTGGTGGCTTCCACCTATGTCATTTT +
Preference number: 3 (lower is better)
Translates to: WEELYGTMLRSP*LLSGGFHLCHF
Trigger: AAAATGACATAGGTGGAAGCCACCAGAGAGAAGCCATGGAGAACGGAGCATTGTTCCATACAGTTCCTCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR CAA 90 bp TATAAAAGCAATGGAGAGGTTGTCATCAAGTGGAAAGGCTTGGGTTTGTTTGCATTCCTGTTGGGTTCTTaGGAGTTGGGGAGCCCCTGG +
Preference number: 3 (lower is better)
Translates to: YKSNGEVVIKWKGLGLFAFLLGS*ELGSPW
Trigger: CCAGGGGCTCCCCAACTCCAAAGAACCCAACAGGAA...TGCAAACAAACCCAAGCCTTTCCACTTGATGACAACCTCTCCATTGCTTTTATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR CCA 72 bp CTCCTAACTGCTGAGCCATCTCTCCAGCCCGTCACATaGGGTTCAATAGAAAAGATTAGACGCATGTTAACT +
Preference number: 3 (lower is better)
Translates to: LLTAEPSLQPVT*GSIEKIRRMLT
Trigger: AGTTAACATGCGTCTAATCTTTTCTATTGAACCCCATGTGACGGGCTGGAGAGATGGCTCAGCAGTTAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR CCA 72 bp ATGATAATTTGCCCACATTTATGTAGGTGCACTGCATaGATGTGTGGAGCTGCTGGGGCTGGAGTTATGGAT +
Preference number: 3 (lower is better)
Translates to: MIICPHLCRCTA*MCGAAGAGVMD
Trigger: ATCCATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAATTATCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR CCA 72 bp TCTGCAGGTCAGGGGCAGCACATATATGACCCAACATaGTATAGATGTGGAATCCTGATGTTGCTACCTTTC +
Preference number: 3 (lower is better)
Translates to: SAGQGQHIYDPT*YRCGILMLLPF
Trigger: GAAAGGTAGCAACATCAGGATTCCACATCTATACCATGTTGGGTCATATATGTGCTGCCCCTGACCTGCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR-3UTR CAA 90 bp CATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGCACCTGTGGCTTATCTaGAAATGTCATATAAACTTG +
Preference number: 3 (lower is better)
Translates to: HLCRCTAWMCGAAGAGVMHLWLI*KCHINL
Trigger: CAAGTTTATATGACATTTCAAGATAAGCCACAGGTG...CATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR TCA 72 bp GAGAATTTCCTTTTGATACCCAGTAAGGGATGGGGCTaGCACAACAAAGCTTCTCTCTCTAGCTATGGTGGA +
Preference number: 3 (lower is better)
Translates to: ENFLLIPSKGWG*HNKASLSSYGG
Trigger: TCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGGGTATCAAAAGGAAATTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR TCA 72 bp TCTGACTCTTGCATAGGCCAAAGTGATGGTATTCTCTaGGAATATCTGAAAGGTACCCCACTCTGCCTCCTT +
Preference number: 3 (lower is better)
Translates to: SDSCIGQSDGIL*EYLKGTPLCLL
Trigger: AAGGAGGCAGAGTGGGGTACCTTTCAGATATTCTCAGAGAATACCATCACTTTGGCCTATGCAAGAGTCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR TCA 72 bp TTGTGTTTTCCTGCTTCTTGGAAGATTGTCTTTTCCTaGCCTCTGCTTCTAAGCACGTGGCAGGGTTCACTT +
Preference number: 3 (lower is better)
Translates to: LCFPASWKIVFS*PLLLSTWQGSL
Trigger: AAGTGAACCCTGCCACGTGCTTAGAAGCAGAGGTCAGGAAAAGACAATCTTCCAAGAAGCAGGAAAACACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR GCA 72 bp TTTATGTCTATGATAATTTGCCCACATTTATGTAGGTaGACTGCATGGATGTGTGGAGCTGCTGGGGCTGGA +
Preference number: 3 (lower is better)
Translates to: FMSMIICPHLCR*TAWMCGAAGAG
Trigger: TCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAATTATCATAGACATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR GCA 72 bp ATGGCTTCTCTCTGGTGGCTTCCACCTATGTCATTTTaGGTCTGTTTCCTTATTTCCCCACATCACTCATCA +
Preference number: 3 (lower is better)
Translates to: MASLWWLPPMSF*VCFLISPHHSS
Trigger: TGATGAGTGATGTGGGGAAATAAGGAAACAGACGCAAAATGACATAGGTGGAAGCCACCAGAGAGAAGCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR CAA 90 bp TGTTCACCTGTGGCTTATCTTGAAATGTCATATAAACTTGTGCTGGTGAGACTTTGCCTCTGGACTCCCTaGCCTGAACAGAGAATTTCC +
Preference number: 3 (lower is better)
Translates to: CSPVAYLEMSYKLVLVRLCLWTP*PEQRIS
Trigger: GGAAATTCTCTGTTCAGGCAAGGGAGTCCAGAGGCA...AAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGCCACAGGTGAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR TCA 72 bp TTATACATTGTTGTGAAATCTTTTGCTGCAGGTGAATaGGCGTGCTTACATGTCCTCGTGGCCTTTACCGTG +
Preference number: 3 (lower is better)
Translates to: LYIVVKSFAAGE*ACLHVLVAFTV
Trigger: CACGGTAAAGGCCACGAGGACATGTAAGCACGCTCATTCACCTGCAGCAAAAGATTTCACAACAATGTATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR TCA 72 bp ACTGTCCTAGATAAGAGTGATGGAGAAACATTTTGCTaGATGCTGAGACTTCGTCAGGAAGCAGTGGTCACA +
Preference number: 3 (lower is better)
Translates to: TVLDKSDGETFC*MLRLRQEAVVT
Trigger: TGTGACCACTGCTTCCTGACGAAGTCTCAGCATTCAGCAAAATGTTTCTCCATCACTCTTATCTAGGACAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR CAA 90 bp TATAAAAGCAATGGAGAGGTTGTCATCAAGTGGAAAGGCTTGGGTTTGTTTGCACACTTTGGCTGCTCTTaGACAGTGTCTGTCTCAAGT +
Preference number: 3 (lower is better)
Translates to: YKSNGEVVIKWKGLGLFAHFGCS*TVSVSS
Trigger: ACTTGAGACAGACACTGTCAAAGAGCAGCCAAAGTG...TGCAAACAAACCCAAGCCTTTCCACTTGATGACAACCTCTCCATTGCTTTTATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR TCA 72 bp TGGCTTATCTTGAAATGTCATATAAACTTGTGCTGGTaGGACTTGATCACACCACTAGAGAGGCCCTTGGAA +
Preference number: 3 (lower is better)
Translates to: WLILKCHINLCW*DLITPLERPLE
Trigger: TTCCAAGGGCCTCTCTAGTGGTGTGATCAAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CAA 90 bp TATAAAAGCAATGGAGAGGTTGTCATCAAGTGGAAAGGCTTGGGTTTGTTTGCAAAAGCAATGGAGAGGTaGTCATCAAGTGGAAAGGCT +
Preference number: 3 (lower is better)
Translates to: YKSNGEVVIKWKGLGLFAKAMER*SSSGKA
Trigger: AGCCTTTCCACTTGATGACAACCTCTCCATTGCTTT...TGCAAACAAACCCAAGCCTTTCCACTTGATGACAACCTCTCCATTGCTTTTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR TCA 72 bp CCTTATTTCCCCACATCACTCATCACCTTCATACTTTaGGGAAGAAGTTTAACAAGAGCCACGGATACCTTA +
Preference number: 3 (lower is better)
Translates to: PYFPTSLITFIL*GRSLTRATDTL
Trigger: TAAGGTATCCGTGGCTCTTGTTAAACTTCTTCCTCAAAGTATGAAGGTGATGAGTGATGTGGGGAAATAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR TCA 72 bp ATTAGCTGGGCACTGCTGGGAAAGATTTCTTTAAATTaGTTCACAGACTTCTGGCTGATAGAAATTGGGTGC +
Preference number: 3 (lower is better)
Translates to: ISWALLGKISLN*FTDFWLIEIGC
Trigger: GCACCCAATTTCTATCAGCCAGAAGTCTGTGAATCAATTTAAAGAAATCTTTCCCAGCAGTGCCCAGCTAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR CCA 72 bp AAAGCAATGGAGAGGTTGTCATCAAGTGGAAAGGCTTaGGTTTGTTTGCAACATACTATCATTGGGCAGTTT +
Preference number: 3 (lower is better)
Translates to: KAMERLSSSGKA*VCLQHTIIGQF
Trigger: AAACTGCCCAATGATAGTATGTTGCAAACAAACCCAAGCCTTTCCACTTGATGACAACCTCTCCATTGCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CAA 90 bp TGGGTAGTGGTTAATCACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATAAGGCTTGGGTTTGTTaGCAACATACTATCATTGGG +
Preference number: 3 (lower is better)
Translates to: WVVVNHPTVVTSVAIIIYKAWVC*QHTIIG
Trigger: CCCAATGATAGTATGTTGCAAACAAACCCAAGCCTT...ATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGTGATTAACCACTACCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CAA 90 bp GGAAATACGATGGAATTTTCTCCAGGTTTTGATACTGTACATTTCCCTGCAGGGTCCACCTATGTCATTTaGCGTCTGTTTCCTTATTTC +
Preference number: 3 (lower is better)
Translates to: GNTMEFSPGFDTVHFPAGSTYVI*RLFPYF
Trigger: GAAATAAGGAAACAGACGCAAAATGACATAGGTGGA...CCCTGCAGGGAAATGTACAGTATCAAAACCTGGAGAAAATTCCATCGTATTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR CAA 90 bp GCTTATCTTGAAATGTCATATAAACTTGTGCTGGTGAGACTTGATCACACCACTACAGAGAATTTCCTTTaGATACCCAGTAAGGGATGG +
Preference number: 3 (lower is better)
Translates to: AYLEMSYKLVLVRLDHTTTENFL*IPSKGW
Trigger: CCATCCCTTACTGGGTATCAAAAGGAAATTCTCTGT...AGTGGTGTGATCAAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR TCA 72 bp CCCTTCCTTCATAACTGGTGTCGCAACAATAAAATTTaGGCCTTGATCAGAGTAACTGTCTTGGCTACATTT +
Preference number: 3 (lower is better)
Translates to: PFLHNWCRNNKI*ALIRVTVLATF
Trigger: AAATGTAGCCAAGACAGTTACTCTGATCAAGGCTCAAATTTTATTGTTGCGACACCAGTTATGAAGGAAGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR CCA 72 bp CTCCACTCCTTCATGAACTATGTAAACATCCAGAGCTaGGGTAGTTTTAGAAATGTTCAGCATAGTGCATTT +
Preference number: 3 (lower is better)
Translates to: LHSFMNYVNIQS*GSFRNVQHSAF
Trigger: AAATGCACTATGCTGAACATTTCTAAAACTACCCCAGCTCTGGATGTTTACATAGTTCATGAAGGAGTGGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR-3UTR CAA 90 bp TGGCATGATTCTGTCCCTTTAATTTTGTCAGCTATGGCAAGTCATCATTATCTTTTAATCACCCTACAGTaGTCACTTCTGTGGCTATCA +
Preference number: 3 (lower is better)
Translates to: WHDSVPLILSAMASHHYLLITLQ*SLLWLS
Trigger: TGATAGCCACAGAAGTGACAACTGTAGGGTGATTAA...AAGATAATGATGACTTGCCATAGCTGACAAAATTAAAGGGACAGAATCATGCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR GCA 72 bp AATTCAAGAAACATTGGTTGGCAACATGCCTCCTCTTaGCTGTATTTTGTTTTCCTCTTAGAGATGATGATG +
Preference number: 3 (lower is better)
Translates to: NSRNIGWQHASS*LYFVFLLEMMM
Trigger: CATCATCATCTCTAAGAGGAAAACAAAATACAGGCAAGAGGAGGCATGTTGCCAACCAATGTTTCTTGAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR-3UTR CAA 90 bp TTGTCACTTCTGTGGCTATCATTATCTATAAAAGCAATGGAGAGGTTGTCATCATGTCTCAAGTTCTTCTaGAAAGAAGTTGGAAAGGTC +
Preference number: 3 (lower is better)
Translates to: LSLLWLSLSIKAMERLSSCLKFF*KEVGKV
Trigger: GACCTTTCCAACTTCTTTCAAGAAGAACTTGAGACA...TGATGACAACCTCTCCATTGCTTTTATAGATAATGATAGCCACAGAAGTGACAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR TCA 72 bp ACATATATGACCCAACATGGTATAGATGTGGAATCCTaGTGTTGCTACCTTTCTGCTTCAGATAATCAATGT +
Preference number: 3 (lower is better)
Translates to: TYMTQHGIDVES*CCYLSASDNQC
Trigger: ACATTGATTATCTGAAGCAGAAAGGTAGCAACATCAGGATTCCACATCTATACCATGTTGGGTCATATATGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR TCA 72 bp ATCCTGAACTCAATAACTCGATATTATACATTGTTGTaGAATCTTTTGCTGCAGGTGAATGAGCGTGCTTAC +
Preference number: 3 (lower is better)
Translates to: ILNSITRYYTLL*NLLLQVNERAY
Trigger: GTAAGCACGCTCATTCACCTGCAGCAAAAGATTTCACAACAATGTATAATATCGAGTTATTGAGTTCAGGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR CCA 72 bp AATAAACAAGCAAATCTCTATGCTAGTGCTCAGGGGTaGAATGAATCCTTCTTTCAGAAGGAGAAAATTATC +
Preference number: 3 (lower is better)
Translates to: NKQANLYASAQG*NESFFQKEKII
Trigger: GATAATTTTCTCCTTCTGAAAGAAGGATTCATTCCACCCCTGAGCACTAGCATAGAGATTTGCTTGTTTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR TCA 72 bp TGTCTCAAGTTCTTCTTGAAAGAAGTTGGAAAGGTCTaGATGAATAATGAGAACAATACAGCATTCCTGTTG +
Preference number: 3 (lower is better)
Translates to: CLKFFLKEVGKV*MNNENNTAFLL
Trigger: CAACAGGAATGCTGTATTGTTCTCATTATTCATTCAGACCTTTCCAACTTCTTTCAAGAAGAACTTGAGACA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR CCA 72 bp ATTATCTATAAAAGCAATGGAGAGGTTGTCATCAAGTaGAAAGGCTTGGGTTTGTTTGCAACATACTATCAT +
Preference number: 3 (lower is better)
Translates to: IIYKSNGEVVIK*KGLGLFATYYH
Trigger: ATGATAGTATGTTGCAAACAAACCCAAGCCTTTCCACTTGATGACAACCTCTCCATTGCTTTTATAGATAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp TCCTCCACGAGCAGCAGTCTCCCTGGCACTTCACTTCTCTCGGATATACCAGGGCAGCCTGGTCAGAGGTaGAGTCAGTGCACGGGCTGG +
Preference number: 4 (lower is better)
Translates to: SSTSSSLPGTSLLSDIPGQPGQR*SQCTGW
Trigger: CCAGCCCGTGCACTGACTTCACCTCTGACCAGGCTG...CCCTGGTATATCCGAGAGAAGTGAAGTGCCAGGGAGACTGCTGCTCGTGGAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp TCCTCCACGAGCAGCAGTCTCCCTGGCACTTCACTTCTCTCGGATATACCAGGGACGGGCTGGTACTACTaGCCATGGCCAGGTGGGCCT +
Preference number: 4 (lower is better)
Translates to: SSTSSSLPGTSLLSDIPGTGWYY*PWPGGP
Trigger: AGGCCCACCTGGCCATGGGCAGTAGTACCAGCCCGT...CCCTGGTATATCCGAGAGAAGTGAAGTGCCAGGGAGACTGCTGCTCGTGGAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CCA 90 bp CAGGGAACGTCCTCCACGAGCAGCAGTCTCCCTGGCACTTCACTTCTCTCGGATCCCCAGACTCAATCTTaGTGCGCAGGTGCCCTCGGA +
Preference number: 4 (lower is better)
Translates to: QGTSSTSSSLPGTSLLSDPQTQS*CAGALG
Trigger: TCCGAGGGCACCTGCGCACCAAGATTGAGTCTGGGG...ATCCGAGAGAAGTGAAGTGCCAGGGAGACTGCTGCTCGTGGAGGACGTTCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp TGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGGATGGCTGTAAGGCCCTCCAGACCCTCTaGCACTCCCCAGGACAGATG +
Preference number: 4 (lower is better)
Translates to: CTAWMCGAAGAGVMDGCKALQTL*HSPGQM
Trigger: CATCTGTCCTGGGGAGTGGCAGAGGGTCTGGAGGGC...CTTACAGCCATCCATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp TCTCACCCAGGTGCCAAGACCGGCTTTCTGAAAGGCCTTGAAGAGCTGCTGTTTGCGAAAACTGGGGCGTaGACCGGGCCCGTCTGTGAC +
Preference number: 4 (lower is better)
Translates to: SHPGAKTGFLKGLEELLFAKTGA*TGPVCD
Trigger: GTCACAGACGGGCCCGGTGCACGCCCCAGTTTTCGC...AAACAGCAGCTCTTCAAGGCCTTTCAGAAAGCCGGTCTTGGCACCTGGGTGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp CGTGCACCTTTCTACTGGACCAGAGATTATTCGGCGGGAATCGGGTCCCCTCCCCAAGGCAGCTTGTGCTaGTTGGCCCTTGGCCAGCTT +
Preference number: 4 (lower is better)
Translates to: RAPFYWTRDYSAGIGSPPQGSLC*LALGQL
Trigger: AAGCTGGCCAAGGGCCAAGCAGCACAAGCTGCCTTG...GGGAGGGGACCCGATTCCCGCCGAATAATCTCTGGTCCAGTAGAAAGGTGCACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp TCCTCCACGAGCAGCAGTCTCCCTGGCACTTCACTTCTCTCGGATATACCAGGGCAGCATGACAGTCGTTaGCAACCAGCCCCTGGTCAC +
Preference number: 4 (lower is better)
Translates to: SSTSSSLPGTSLLSDIPGQHDSR*QPAPGH
Trigger: GTGACCAGGGGCTGGTTGTCAACGACTGTCATGCTG...CCCTGGTATATCCGAGAGAAGTGAAGTGCCAGGGAGACTGCTGCTCGTGGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp TCCTCCACGAGCAGCAGTCTCCCTGGCACTTCACTTCTCTCGGATATACCAGGGCTCTCGGGGTCCTCTTaGTGCTTGCTCAAGTGCAGC +
Preference number: 4 (lower is better)
Translates to: SSTSSSLPGTSLLSDIPGLSGSS*CLLKCS
Trigger: GCTGCACTTGAGCAAGCATCAAGAGGACCCCGAGAG...CCCTGGTATATCCGAGAGAAGTGAAGTGCCAGGGAGACTGCTGCTCGTGGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp TGCTGGAACCTGAGGAGCCACACACGTGCACCTTTCTACTGGACCAGAGATTATGCGAAAACTGGGGCGTaGACCGGGCCCGTCTGTGAC +
Preference number: 4 (lower is better)
Translates to: CWNLRSHTRAPFYWTRDYAKTGA*TGPVCD
Trigger: GTCACAGACGGGCCCGGTGCACGCCCCAGTTTTCGC...ATAATCTCTGGTCCAGTAGAAAGGTGCACGTGTGTGGCTCCTCAGGTTCCAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp TCCTCCACGAGCAGCAGTCTCCCTGGCACTTCACTTCTCTCGGATATACCAGGGATCTTGGTGCGCAGGTaGCCTCGGAACTTCCTGACG +
Preference number: 4 (lower is better)
Translates to: SSTSSSLPGTSLLSDIPGILVRR*PRNFLT
Trigger: CGTCAGGAAGTTCCGAGGGCACCTGCGCACCAAGAT...CCCTGGTATATCCGAGAGAAGTGAAGTGCCAGGGAGACTGCTGCTCGTGGAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp TGGTTAAAAGCATCTTCCAGAGAACCCATTTGGCTTCCTGGCACCCACACAGGGATCCCACGTCTGGACTaGACTGGGGCCCCGCACAGG +
Preference number: 4 (lower is better)
Translates to: WLKASSREPIWLPGTHTGIPRLD*TGAPHR
Trigger: CCTGTGCGGGGCCCCAGTGCAGTCCAGACGTGGGAT...CCCTGTGTGGGTGCCAGGAAGCCAAATGGGTTCTCTGGAAGATGCTTTTAACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR GCA 90 bp GGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATGGGGTTCTTGGAATCCCACGTCTGGACTaGACTGGGGCCCCGCACAGG +
Preference number: 4 (lower is better)
Translates to: GADTTKLLSLAMVDGVLGIPRLD*TGAPHR
Trigger: CCTGTGCGGGGCCCCAGTGCAGTCCAGACGTGGGAT...TCCAAGAACCCCATCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp ACAGCCCAGGGAGAAGCAGCCCGACCCAAACTCAAACCTAGTCTCTCATCCACAGTGGCTCATGACCCGTaGAAGATGGCCCGTGTGGTG +
Preference number: 4 (lower is better)
Translates to: TAQGEAARPKLKPSLSSTVAHDP*KMARVV
Trigger: CACCACACGGGCCATCTTGCACGGGTCATGAGCCAC...TGTGGATGAGAGACTAGGTTTGAGTTTGGGTCGGGCTGCTTCTCCCTGGGCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp CAGCCCGACCCAAACTCAAACCTAGTCTCTCATCCACACATGGAGCCACATGTTTCTCCAGGTCGGCGCTaGCCACGACCCAGTTGGCAC +
Preference number: 4 (lower is better)
Translates to: QPDPNSNLVSHPHMEPHVSPGRR*PRPSWH
Trigger: GTGCCAACTGGGTCGTGGGCAGCGCCGACCTGGAGA...AACATGTGGCTCCATGTGTGGATGAGAGACTAGGTTTGAGTTTGGGTCGGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp CAGCCCGACCCAAACTCAAACCTAGTCTCTCATCCACACATGGAGCCACATGTTAGCCACTGCGAAAACTaGGGCGTGCACCGGGCCCGT +
Preference number: 4 (lower is better)
Translates to: QPDPNSNLVSHPHMEPHVSHCEN*GVHRAR
Trigger: ACGGGCCCGGTGCACGCCCCAGTTTTCGCAGTGGCT...AACATGTGGCTCCATGTGTGGATGAGAGACTAGGTTTGAGTTTGGGTCGGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp GGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATGGGGTTCTTGGACTGCCCATGGCCAGGTaGGCCTGGAAGGCATTGGGG +
Preference number: 4 (lower is better)
Translates to: GADTTKLLSLAMVDGVLGLPMAR*AWKALG
Trigger: CCCCAATGCCTTCCAGGCCCACCTGGCCATGGGCAG...TCCAAGAACCCCATCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp ACAGCCCAGGGAGAAGCAGCCCGACCCAAACTCAAACCTAGTCTCTCATCCACATGGTACTACTGCCCATaGCCAGGTGGGCCTGGAAGG +
Preference number: 4 (lower is better)
Translates to: TAQGEAARPKLKPSLSSTWYYCP*PGGPGR
Trigger: CCTTCCAGGCCCACCTGGCCATGGGCAGTAGTACCA...TGTGGATGAGAGACTAGGTTTGAGTTTGGGTCGGGCTGCTTCTCCCTGGGCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp TCCTCCACGAGCAGCAGTCTCCCTGGCACTTCACTTCTCTCGGATATACCAGGGGCAGCTTGTGCTGCTTaGCCCTTGGCCAGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: SSTSSSLPGTSLLSDIPGAACAA*PLASFL
Trigger: CAAGAAGCTGGCCAAGGGCCAAGCAGCACAAGCTGC...CCCTGGTATATCCGAGAGAAGTGAAGTGCCAGGGAGACTGCTGCTCGTGGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CCA 90 bp TGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGGATGGCTGTAAGATGACCCGTGCAAGATaGCCCGTGTGGTGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: CTAWMCGAAGAGVMDGCKMTRAR*PVWCRL
Trigger: CAGCCTGCACCACACGGGCCATCTTGCACGGGTCAT...CTTACAGCCATCCATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp CGTGCACCTTTCTACTGGACCAGAGATTATTCGGCGGGAATCGGGTCCCCTCCCTGTGAGCCCCCTGCTTaGCCTCACAGTACATGGATG +
Preference number: 4 (lower is better)
Translates to: RAPFYWTRDYSAGIGSPPCEPPA*PHSTWM
Trigger: CATCCATGTACTGTGAGGCCAAGCAGGGGGCTCACA...GGGAGGGGACCCGATTCCCGCCGAATAATCTCTGGTCCAGTAGAAAGGTGCACG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp CATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGCACCGGGCCCGTCTGTaGCACCATTCGGTACTGCAG +
Preference number: 4 (lower is better)
Translates to: HLCRCTAWMCGAAGAGVMHRARL*HHSVLQ
Trigger: CTGCAGTACCGAATGGTGTCACAGACGGGCCCGGTG...CATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp TGGTTAAAAGCATCTTCCAGAGAACCCATTTGGCTTCCTGGCACCCACACAGGGCAGCCTGGTCAGAGGTaGAGTCAGTGCACGGGCTGG +
Preference number: 4 (lower is better)
Translates to: WLKASSREPIWLPGTHTGQPGQR*SQCTGW
Trigger: CCAGCCCGTGCACTGACTTCACCTCTGACCAGGCTG...CCCTGTGTGGGTGCCAGGAAGCCAAATGGGTTCTCTGGAAGATGCTTTTAACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR TCA 90 bp ATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTCAGCCTGGTCAGAGGTaGAGTCAGTGCACGGGCTGG +
Preference number: 4 (lower is better)
Translates to: ICPHLCRCTAWMCGAAGAQPGQR*SQCTGW
Trigger: CCAGCCCGTGCACTGACTTCACCTCTGACCAGGCTG...AGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp ACAGCCCAGGGAGAAGCAGCCCGACCCAAACTCAAACCTAGTCTCTCATCCACACGACCCAGTTGGCACTaGAGTGGGGAGACTTTCCTG +
Preference number: 4 (lower is better)
Translates to: TAQGEAARPKLKPSLSSTRPSWH*SGETFL
Trigger: CAGGAAAGTCTCCCCACTTCAGTGCCAACTGGGTCG...TGTGGATGAGAGACTAGGTTTGAGTTTGGGTCGGGCTGCTTCTCCCTGGGCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp GGGGATCGGAACAAAGTGGGCAGATGTTTAGCAGGAGGGAAGCACAGCAAGGTGCGACCCAGTTGGCACTaGAGTGGGGAGACTTTCCTG +
Preference number: 4 (lower is better)
Translates to: GDRNKVGRCLAGGKHSKVRPSWH*SGETFL
Trigger: CAGGAAAGTCTCCCCACTTCAGTGCCAACTGGGTCG...CACCTTGCTGTGCTTCCCTCCTGCTAAACATCTGCCCACTTTGTTCCGATCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp GGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATGGGGTTCTTGGAGCCCTCCAGACCCTCTaGCACTCCCCAGGACAGATG +
Preference number: 4 (lower is better)
Translates to: GADTTKLLSLAMVDGVLGALQTL*HSPGQM
Trigger: CATCTGTCCTGGGGAGTGGCAGAGGGTCTGGAGGGC...TCCAAGAACCCCATCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp TCCTCCACGAGCAGCAGTCTCCCTGGCACTTCACTTCTCTCGGATATACCAGGGCTTCAGGGCCATTTCTaGTGCCCGCATCTTGGCCTT +
Preference number: 4 (lower is better)
Translates to: SSTSSSLPGTSLLSDIPGLQGHF*CPHLGL
Trigger: AAGGCCAAGATGCGGGCAGCAGAAATGGCCCTGAAG...CCCTGGTATATCCGAGAGAAGTGAAGTGCCAGGGAGACTGCTGCTCGTGGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp ACAGCCCAGGGAGAAGCAGCCCGACCCAAACTCAAACCTAGTCTCTCATCCACAATCTTGGTGCGCAGGTaGCCTCGGAACTTCCTGACG +
Preference number: 4 (lower is better)
Translates to: TAQGEAARPKLKPSLSSTILVRR*PRNFLT
Trigger: CGTCAGGAAGTTCCGAGGGCACCTGCGCACCAAGAT...TGTGGATGAGAGACTAGGTTTGAGTTTGGGTCGGGCTGCTTCTCCCTGGGCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp GTGGACAAAGCCCAGGGGTCACTCTGCTCCAAGCTCTCCATAGAATACCACAGTGTGGCTCATGACCCGTaGAAGATGGCCCGTGTGGTG +
Preference number: 4 (lower is better)
Translates to: VDKAQGSLCSKLSIEYHSVAHDP*KMARVV
Trigger: CACCACACGGGCCATCTTGCACGGGTCATGAGCCAC...ACTGTGGTATTCTATGGAGAGCTTGGAGCAGAGTGACCCCTGGGCTTTGTCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CCA 90 bp TCCTCCACGAGCAGCAGTCTCCCTGGCACTTCACTTCTCTCGGATATACCAGGGGGGCCTGGAAGGCATTaGGGAACTGCACAAAGGACT +
Preference number: 4 (lower is better)
Translates to: SSTSSSLPGTSLLSDIPGGPGRH*GTAQRT
Trigger: AGTCCTTTGTGCAGTTCCCCAATGCCTTCCAGGCCC...CCCTGGTATATCCGAGAGAAGTGAAGTGCCAGGGAGACTGCTGCTCGTGGAGGA
57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp TACCCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGCACCGGGCCCGTCTGTaGCACCATTCGGTACTGCAG +
Preference number: 4 (lower is better)
Translates to: YPVRDGADTTKLLSLAMVHRARL*HHSVLQ
Trigger: CTGCAGTACCGAATGGTGTCACAGACGGGCCCGGTG...CACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp GGGGATCGGAACAAAGTGGGCAGATGTTTAGCAGGAGGGAAGCACAGCAAGGTGGCCCTCGGAACTTCCTaGCGATGTGTTTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: GDRNKVGRCLAGGKHSKVALGTS*RCVCCC
Trigger: ACAGCAGCAAACACATCGTCAGGAAGTTCCGAGGGC...CACCTTGCTGTGCTTCCCTCCTGCTAAACATCTGCCCACTTTGTTCCGATCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp TGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGGATGGCTGTAAGACAGGCTCGATGAAGTaGCAGAGGAGAGCGCCTTGT +
Preference number: 4 (lower is better)
Translates to: CTAWMCGAAGAGVMDGCKTGSMK*QRRAPC
Trigger: ACAAGGCGCTCTCCTCTGTCACTTCATCGAGCCTGT...CTTACAGCCATCCATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp ACAGCCCAGGGAGAAGCAGCCCGACCCAAACTCAAACCTAGTCTCTCATCCACACAGGGCCATTTCTGCTaGCCGCATCTTGGCCTTCTT +
Preference number: 4 (lower is better)
Translates to: TAQGEAARPKLKPSLSSTQGHFC*PHLGLL
Trigger: AAGAAGGCCAAGATGCGGGCAGCAGAAATGGCCCTG...TGTGGATGAGAGACTAGGTTTGAGTTTGGGTCGGGCTGCTTCTCCCTGGGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp TCTCACCCAGGTGCCAAGACCGGCTTTCTGAAAGGCCTTGAAGAGCTGCTGTTTCAAGGCAGCTTGTGCTaGTTGGCCCTTGGCCAGCTT +
Preference number: 4 (lower is better)
Translates to: SHPGAKTGFLKGLEELLFQGSLC*LALGQL
Trigger: AAGCTGGCCAAGGGCCAAGCAGCACAAGCTGCCTTG...AAACAGCAGCTCTTCAAGGCCTTTCAGAAAGCCGGTCTTGGCACCTGGGTGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp CAGCCCGACCCAAACTCAAACCTAGTCTCTCATCCACACATGGAGCCACATGTTCTGCAAGGCAGCTTGTaGTGCTTGGCCCTTGGCCAG +
Preference number: 4 (lower is better)
Translates to: QPDPNSNLVSHPHMEPHVLQGSL*CLALGQ
Trigger: CTGGCCAAGGGCCAAGCAGCACAAGCTGCCTTGCAG...AACATGTGGCTCCATGTGTGGATGAGAGACTAGGTTTGAGTTTGGGTCGGGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp TGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGGATGGCTGTAAGCAGACTCAATCTTGGTaGGCAGGTGCCCTCGGAACT +
Preference number: 4 (lower is better)
Translates to: CTAWMCGAAGAGVMDGCKQTQSW*AGALGT
Trigger: AGTTCCGAGGGCACCTGCGCACCAAGATTGAGTCTG...CTTACAGCCATCCATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp ACAGCCCAGGGAGAAGCAGCCCGACCCAAACTCAAACCTAGTCTCTCATCCACAGGACCAGCGCATTCTTaGGTGTCACAGACCAGGAGA +
Preference number: 4 (lower is better)
Translates to: TAQGEAARPKLKPSLSSTGPAHS*VSQTRR
Trigger: TCTCCTGGTCTGTGACACCCAAGAATGCGCTGGTCC...TGTGGATGAGAGACTAGGTTTGAGTTTGGGTCGGGCTGCTTCTCCCTGGGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp TGGTTAAAAGCATCTTCCAGAGAACCCATTTGGCTTCCTGGCACCCACACAGGGTGGTACTACTGCCCATaGCCAGGTGGGCCTGGAAGG +
Preference number: 4 (lower is better)
Translates to: WLKASSREPIWLPGTHTGWYYCP*PGGPGR
Trigger: CCTTCCAGGCCCACCTGGCCATGGGCAGTAGTACCA...CCCTGTGTGGGTGCCAGGAAGCCAAATGGGTTCTCTGGAAGATGCTTTTAACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR CCA 90 bp TGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGGATGGCTGTAAGCAGTTGGCACTGAAGTaGGGAGACTTTCCTGGCTGC +
Preference number: 4 (lower is better)
Translates to: CTAWMCGAAGAGVMDGCKQLALK*GDFPGC
Trigger: GCAGCCAGGAAAGTCTCCCCACTTCAGTGCCAACTG...CTTACAGCCATCCATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp GTGGTTAAAAGCATCTTCCAGAGAACCCATTTGGCTTCCTGGCACCCACACAGGCAGCATGACAGTCGTTaGCAACCAGCCCCTGGTCAC +
Preference number: 4 (lower is better)
Translates to: VVKSIFQRTHLASWHPHRQHDSR*QPAPGH
Trigger: GTGACCAGGGGCTGGTTGTCAACGACTGTCATGCTG...CCTGTGTGGGTGCCAGGAAGCCAAATGGGTTCTCTGGAAGATGCTTTTAACCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR TCA 90 bp ATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGTACACAGGCTCGATaGAGTGACAGAGGAGAGCGC +
Preference number: 4 (lower is better)
Translates to: ICPHLCRCTAWMCGAAGAGTQAR*SDRGER
Trigger: GCGCTCTCCTCTGTCACTTCATCGAGCCTGTGTACC...AGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp GGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATGGGGTTCTTGGAGCAGGCTGCCCACAATaGTGCTGTGGAGGTACACAG +
Preference number: 4 (lower is better)
Translates to: GADTTKLLSLAMVDGVLGAGCPQ*CCGGTQ
Trigger: CTGTGTACCTCCACAGCATCATTGTGGGCAGCCTGC...TCCAAGAACCCCATCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp AAGCTGGGAACTCAACCAGAGTCCTCTATAGAAGCAGCAAAGCTCCTAACTGCTTGCCGGGCCTCTGCGTaGCTCACGCCACTAAGGAGA +
Preference number: 4 (lower is better)
Translates to: KLGTQPESSIEAAKLLTACRASA*LTPLRR
Trigger: TCTCCTTAGTGGCGTGAGTCACGCAGAGGCCCGGCA...AGCAGTTAGGAGCTTTGCTGCTTCTATAGAGGACTCTGGTTGAGTTCCCAGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp CATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGCGACCCAGTTGGCACTaGAGTGGGGAGACTTTCCTG +
Preference number: 4 (lower is better)
Translates to: HLCRCTAWMCGAAGAGVMRPSWH*SGETFL
Trigger: CAGGAAAGTCTCCCCACTTCAGTGCCAACTGGGTCG...CATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp AAGCTGGGAACTCAACCAGAGTCCTCTATAGAAGCAGCAAAGCTCCTAACTGCTACGGGCTGGTACTACTaGCCATGGCCAGGTGGGCCT +
Preference number: 4 (lower is better)
Translates to: KLGTQPESSIEAAKLLTATGWYY*PWPGGP
Trigger: AGGCCCACCTGGCCATGGGCAGTAGTACCAGCCCGT...AGCAGTTAGGAGCTTTGCTGCTTCTATAGAGGACTCTGGTTGAGTTCCCAGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp ATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTTGGCCAGCTTCTTGCTaGGTCCAGAGCCTTCGAACG +
Preference number: 4 (lower is better)
Translates to: ICPHLCRCTAWMCGAAGAWPASC*VQSLRT
Trigger: CGTTCGAAGGCTCTGGACGCAGCAAGAAGCTGGCCA...AGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp CATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGCAAGGCAGCTTGTGCTaGTTGGCCCTTGGCCAGCTT +
Preference number: 4 (lower is better)
Translates to: HLCRCTAWMCGAAGAGVMQGSLC*LALGQL
Trigger: AAGCTGGCCAAGGGCCAAGCAGCACAAGCTGCCTTG...CATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp TACCCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGCTGCAAGGCAGCTTGTaGTGCTTGGCCCTTGGCCAG +
Preference number: 4 (lower is better)
Translates to: YPVRDGADTTKLLSLAMVLQGSL*CLALGQ
Trigger: CTGGCCAAGGGCCAAGCAGCACAAGCTGCCTTGCAG...CACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp TCCTCCACGAGCAGCAGTCTCCCTGGCACTTCACTTCTCTCGGATATACCAGGGCTGGGACACAGAGTCTaGAAAATCCTGTGGCAAGAG +
Preference number: 4 (lower is better)
Translates to: SSTSSSLPGTSLLSDIPGLGHRV*KILWQE
Trigger: CTCTTGCCACAGGATTTTGCAGACTCTGTGTCCCAG...CCCTGGTATATCCGAGAGAAGTGAAGTGCCAGGGAGACTGCTGCTCGTGGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp TGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGGATGGCTGTAAGCTCCACAGGGGGATGTaGTCACGTAGAGATGGAAGA +
Preference number: 4 (lower is better)
Translates to: CTAWMCGAAGAGVMDGCKLHRGM*SRRDGR
Trigger: TCTTCCATCTCTACGTGAGCACATCCCCCTGTGGAG...CTTACAGCCATCCATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp AATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCCGTGGTACTACTGCCCATaGCCAGGTGGGCCTGGAAGG +
Preference number: 4 (lower is better)
Translates to: NCGGNDLGMGGTVWNNAPWYYCP*PGGPGR
Trigger: CCTTCCAGGCCCACCTGGCCATGGGCAGTAGTACCA...CGGAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CCA 90 bp CTTTTGCTGCAGGTGAATGAGCGTGCTTACATGTCCTCGTGGCCTTTACCGTGGTTGACAACCAGCCCCTaGTCACTGATGTGCTCACCG +
Preference number: 4 (lower is better)
Translates to: LLLQVNERAYMSSWPLPWLTTSP*SLMCSP
Trigger: CGGTGAGCACATCAGTGACCAGGGGCTGGTTGTCAA...CCACGGTAAAGGCCACGAGGACATGTAAGCACGCTCATTCACCTGCAGCAAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR CCA 90 bp CCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATCCCCAGACTCAATCTTaGTGCGCAGGTGCCCTCGGA +
Preference number: 4 (lower is better)
Translates to: PVRDGADTTKLLSLAMVDPQTQS*CAGALG
Trigger: TCCGAGGGCACCTGCGCACCAAGATTGAGTCTGGGG...ATCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp TACCCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGCAAGATGGCCCGTGTaGTGCAGGCTGCCCACAATG +
Preference number: 4 (lower is better)
Translates to: YPVRDGADTTKLLSLAMVARWPV*CRLPTM
Trigger: CATTGTGGGCAGCCTGCACCACACGGGCCATCTTGC...CACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp CCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATATGACCCGTGCAAGATaGCCCGTGTGGTGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: PVRDGADTTKLLSLAMVDMTRAR*PVWCRL
Trigger: CAGCCTGCACCACACGGGCCATCTTGCACGGGTCAT...ATCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp GGGGATCGGAACAAAGTGGGCAGATGTTTAGCAGGAGGGAAGCACAGCAAGGTGTGGCCTCACAGTACATaGATGGTGTGTCTCCATGGC +
Preference number: 4 (lower is better)
Translates to: GDRNKVGRCLAGGKHSKVWPHST*MVCLHG
Trigger: GCCATGGAGACACACCATCCATGTACTGTGAGGCCA...CACCTTGCTGTGCTTCCCTCCTGCTAAACATCTGCCCACTTTGTTCCGATCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp TCCTCCACGAGCAGCAGTCTCCCTGGCACTTCACTTCTCTCGGATATACCAGGGAGGAGCAAGGAAGGTTaGCAGTATGCTGACTTTGTC +
Preference number: 4 (lower is better)
Translates to: SSTSSSLPGTSLLSDIPGRSKEG*QYADFV
Trigger: GACAAAGTCAGCATACTGTCAACCTTCCTTGCTCCT...CCCTGGTATATCCGAGAGAAGTGAAGTGCCAGGGAGACTGCTGCTCGTGGAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp TCCTCCACGAGCAGCAGTCTCCCTGGCACTTCACTTCTCTCGGATATACCAGGGCAGGACTTAGGTACTTaGAAGGAGCAAGGAAGGTTG +
Preference number: 4 (lower is better)
Translates to: SSTSSSLPGTSLLSDIPGQDLGT*KEQGRL
Trigger: CAACCTTCCTTGCTCCTTTCAAGTACCTAAGTCCTG...CCCTGGTATATCCGAGAGAAGTGAAGTGCCAGGGAGACTGCTGCTCGTGGAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp CCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATCAGCATGACAGTCGTTaGCAACCAGCCCCTGGTCAC +
Preference number: 4 (lower is better)
Translates to: PVRDGADTTKLLSLAMVDQHDSR*QPAPGH
Trigger: GTGACCAGGGGCTGGTTGTCAACGACTGTCATGCTG...ATCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp CCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATCTCTCGGGGTCCTCTTaGTGCTTGCTCAAGTGCAGC +
Preference number: 4 (lower is better)
Translates to: PVRDGADTTKLLSLAMVDLSGSS*CLLKCS
Trigger: GCTGCACTTGAGCAAGCATCAAGAGGACCCCGAGAG...ATCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp TACCCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGCTCTCGGGGTCCTCTTaGTGCTTGCTCAAGTGCAGC +
Preference number: 4 (lower is better)
Translates to: YPVRDGADTTKLLSLAMVLSGSS*CLLKCS
Trigger: GCTGCACTTGAGCAAGCATCAAGAGGACCCCGAGAG...CACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGGGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp TACCCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGCCAGGCTTCAGCTCATaGAGCTGGACCAGCGCATTC +
Preference number: 4 (lower is better)
Translates to: YPVRDGADTTKLLSLAMVPGFSS*SWTSAF
Trigger: GAATGCGCTGGTCCAGCTGCATGAGCTGAAGCCTGG...CACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGGGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp CCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATCCTTGGCCAGCTTCTTaGTGCGTCCAGAGCCTTCGA +
Preference number: 4 (lower is better)
Translates to: PVRDGADTTKLLSLAMVDPWPAS*CVQSLR
Trigger: TCGAAGGCTCTGGACGCAGCAAGAAGCTGGCCAAGG...ATCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp ACAGCCCAGGGAGAAGCAGCCCGACCCAAACTCAAACCTAGTCTCTCATCCACACCTGTGGCAAGAGGTTaGTTTTACTCCTGCTGGGTA +
Preference number: 4 (lower is better)
Translates to: TAQGEAARPKLKPSLSSTPVARG*FYSCWV
Trigger: TACCCAGCAGGAGTAAAAGCAACCTCTTGCCACAGG...TGTGGATGAGAGACTAGGTTTGAGTTTGGGTCGGGCTGCTTCTCCCTGGGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp CATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGGGTCATGACGATTCCTaGCAGTGTTTTGTGGCGGGC +
Preference number: 4 (lower is better)
Translates to: HLCRCTAWMCGAAGAGVMGHDDS*QCFVAG
Trigger: GCCCGCCACAAAACACTGGCAGGAATCGTCATGACC...CATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp TGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGGATGGCTGTAAGGACATGGTGATTAGCTaGTCCCCCAATAGGATGCCA +
Preference number: 4 (lower is better)
Translates to: CTAWMCGAAGAGVMDGCKDMVIS*SPNRMP
Trigger: TGGCATCCTATTGGGGGAGCAGCTAATCACCATGTC...CTTACAGCCATCCATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp AATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCCGAGATGGCCCGTGTGGTaGAGGCTGCCCACAATGATG +
Preference number: 4 (lower is better)
Translates to: NCGGNDLGMGGTVWNNAPRWPVW*RLPTMM
Trigger: CATCATTGTGGGCAGCCTGCACCACACGGGCCATCT...CGGAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CCA 90 bp AGAATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCATGACCCGTGCAAGATaGCCCGTGTGGTGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: RIVGEMTWGWEELYGTMLMTRAR*PVWCRL
Trigger: CAGCCTGCACCACACGGGCCATCTTGCACGGGTCAT...GAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CCA 90 bp GGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATGGGGTTCTTGGAGATGGTGTGTCTCCATaGCTGGGGATCCGTGTGCTT +
Preference number: 4 (lower is better)
Translates to: GADTTKLLSLAMVDGVLGDGVSP*LGIRVL
Trigger: AAGCACACGGATCCCCAGCCATGGAGACACACCATC...TCCAAGAACCCCATCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp TGCTGGAACCTGAGGAGCCACACACGTGCACCTTTCTACTGGACCAGAGATTATCTGATCTTGCTCCGGTaGTTTTCTCACCCAGGTGCC +
Preference number: 4 (lower is better)
Translates to: CWNLRSHTRAPFYWTRDYLILLR*FSHPGA
Trigger: GGCACCTGGGTGAGAAAACCACCGGAGCAAGATCAG...ATAATCTCTGGTCCAGTAGAAAGGTGCACGTGTGTGGCTCCTCAGGTTCCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR CAA 72 bp GAGAACAATACAGCATTCCTGTTGGGTTCTTTGGAGTaGGGGAGCCCCTGGCTTTCCTGTTCACCTGTGGCT +
Preference number: 4 (lower is better)
Translates to: ENNTAFLLGSLE*GSPWLSCSPVA
Trigger: AGCCACAGGTGAACAGGAAAGCCAGGGGCTCCCCAACTCCAAAGAACCCAACAGGAATGCTGTATTGTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp ATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTTCAGTATCAACGGGATaGCAGCCTGGGAAGTCTTCG +
Preference number: 4 (lower is better)
Translates to: ICPHLCRCTAWMCGAAGASVSTG*QPGKSS
Trigger: CGAAGACTTCCCAGGCTGTCATCCCGTTGATACTGA...AGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp AATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCCGCACGGAACTTCTGTGTaGCCAGCTGGGACACAGAGT +
Preference number: 4 (lower is better)
Translates to: NCGGNDLGMGGTVWNNAPHGTSV*PAGTQS
Trigger: ACTCTGTGTCCCAGCTGGTCACACAGAAGTTCCGTG...CGGAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp TGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGGATGGCTGTAAGTTTCATATGGAGAGTTaGCTCTGGCATCTCCACAGG +
Preference number: 4 (lower is better)
Translates to: CTAWMCGAAGAGVMDGCKFHMES*LWHLHR
Trigger: CCTGTGGAGATGCCAGAGTCAACTCTCCATATGAAA...CTTACAGCCATCCATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp TACCCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGCCCTCGGAACTTCCTaGCGATGTGTTTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: YPVRDGADTTKLLSLAMVALGTS*RCVCCC
Trigger: ACAGCAGCAAACACATCGTCAGGAAGTTCCGAGGGC...CACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGGGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp ATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTCTGTGCAGGACATGGTaGTTAGCTGCTCCCCCAATA +
Preference number: 4 (lower is better)
Translates to: ICPHLCRCTAWMCGAAGALCRTW*LAAPPI
Trigger: TATTGGGGGAGCAGCTAATCACCATGTCCTGCACAG...AGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp CCATGGCTTCTCTCTGGTGGCTTCCACCTATGTCATTTTGCGTCTGTTTCCTTAGCAGGCTGCCCACAATaGTGCTGTGGAGGTACACAG +
Preference number: 4 (lower is better)
Translates to: PWLLSGGFHLCHFASVSLAGCPQ*CCGGTQ
Trigger: CTGTGTACCTCCACAGCATCATTGTGGGCAGCCTGC...TAAGGAAACAGACGCAAAATGACATAGGTGGAAGCCACCAGAGAGAAGCCATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp CCCCACATCACTCATCACCTTCATACTTTGAGGAAGAAGTTTAACAAGAGCCACTGCCGGGCCTCTGCGTaGCTCACGCCACTAAGGAGA +
Preference number: 4 (lower is better)
Translates to: PHITHHLHTLRKKFNKSHCRASA*LTPLRR
Trigger: TCTCCTTAGTGGCGTGAGTCACGCAGAGGCCCGGCA...GTGGCTCTTGTTAAACTTCTTCCTCAAAGTATGAAGGTGATGAGTGATGTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp CATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGAAGGCATTGGGGAACTaGACAAAGGACTTCAGGGCC +
Preference number: 4 (lower is better)
Translates to: HLCRCTAWMCGAAGAGVMKALGN*TKDFRA
Trigger: GGCCCTGAAGTCCTTTGTGCAGTTCCCCAATGCCTT...CATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp AGAATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCCCTTGGCCAGCTTCTTaGTGCGTCCAGAGCCTTCGA +
Preference number: 4 (lower is better)
Translates to: RIVGEMTWGWEELYGTMLPWPAS*CVQSLR
Trigger: TCGAAGGCTCTGGACGCAGCAAGAAGCTGGCCAAGG...GAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp GGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATGGGGTTCTTGGAATATCGAAGAGGGCCTaGAAGGCAGCTTGTGCTGCT +
Preference number: 4 (lower is better)
Translates to: GADTTKLLSLAMVDGVLGISKRA*KAACAA
Trigger: AGCAGCACAAGCTGCCTTGCAGGCCCTCTTCGATAT...TCCAAGAACCCCATCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp CTTTTGCTGCAGGTGAATGAGCGTGCTTACATGTCCTCGTGGCCTTTACCGTGGGACAGAACGATGACCTaGGCTTGTTTGGTGTCCAAG +
Preference number: 4 (lower is better)
Translates to: LLLQVNERAYMSSWPLPWDRTMT*ACLVSK
Trigger: CTTGGACACCAAACAAGCGCAGGTCATCGTTCTGTC...CCACGGTAAAGGCCACGAGGACATGTAAGCACGCTCATTCACCTGCAGCAAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR GCA 90 bp ATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTCCCTGGTCACTGATGTaGTCACCGCTGATACACTTG +
Preference number: 4 (lower is better)
Translates to: ICPHLCRCTAWMCGAAGAPWSLM*SPLIHL
Trigger: CAAGTGTATCAGCGGTGAGCACATCAGTGACCAGGG...AGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp TGCTGGAACCTGAGGAGCCACACACGTGCACCTTTCTACTGGACCAGAGATTATCCCTGGTCACTGATGTaGTCACCGCTGATACACTTG +
Preference number: 4 (lower is better)
Translates to: CWNLRSHTRAPFYWTRDYPWSLM*SPLIHL
Trigger: CAAGTGTATCAGCGGTGAGCACATCAGTGACCAGGG...ATAATCTCTGGTCCAGTAGAAAGGTGCACGTGTGTGGCTCCTCAGGTTCCAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp AATACCACAGTCTGCGCCCATGTTTCCTCTAACAACATTATATCATTCCTCCACATCCCACGTCTGGACTaGACTGGGGCCCCGCACAGG +
Preference number: 4 (lower is better)
Translates to: NTTVCAHVSSNNIISFLHIPRLD*TGAPHR
Trigger: CCTGTGCGGGGCCCCAGTGCAGTCCAGACGTGGGAT...GTGGAGGAATGATATAATGTTGTTAGAGGAAACATGGGCGCAGACTGTGGTATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp TCTCACCCAGGTGCCAAGACCGGCTTTCTGAAAGGCCTTGAAGAGCTGCTGTTTGACATGGTGATTAGCTaGTCCCCCAATAGGATGCCA +
Preference number: 4 (lower is better)
Translates to: SHPGAKTGFLKGLEELLFDMVIS*SPNRMP
Trigger: TGGCATCCTATTGGGGGAGCAGCTAATCACCATGTC...AAACAGCAGCTCTTCAAGGCCTTTCAGAAAGCCGGTCTTGGCACCTGGGTGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp TTCTGGCTGATAGAAATTGGGTGCCCATGTGAAAGAGGCACTAGAATTCAGATAAGCCACTGCGAAAACTaGGGCGTGCACCGGGCCCGT +
Preference number: 4 (lower is better)
Translates to: FWLIEIGCPCERGTRIQISHCEN*GVHRAR
Trigger: ACGGGCCCGGTGCACGCCCCAGTTTTCGCAGTGGCT...TATCTGAATTCTAGTGCCTCTTTCACATGGGCACCCAATTTCTATCAGCCAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CCA 90 bp TACCCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGGGCCTGGAAGGCATTaGGGAACTGCACAAAGGACT +
Preference number: 4 (lower is better)
Translates to: YPVRDGADTTKLLSLAMVGPGRH*GTAQRT
Trigger: AGTCCTTTGTGCAGTTCCCCAATGCCTTCCAGGCCC...CACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGGGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp GGAAATACGATGGAATTTTCTCCAGGTTTTGATACTGTACATTTCCCTGCAGGGCTGCCCATGGCCAGGTaGGCCTGGAAGGCATTGGGG +
Preference number: 4 (lower is better)
Translates to: GNTMEFSPGFDTVHFPAGLPMAR*AWKALG
Trigger: CCCCAATGCCTTCCAGGCCCACCTGGCCATGGGCAG...CCCTGCAGGGAAATGTACAGTATCAAAACCTGGAGAAAATTCCATCGTATTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CCA 90 bp GTGGTTAAAAGCATCTTCCAGAGAACCCATTTGGCTTCCTGGCACCCACACAGGTGCTTTTACTCCTGCTaGGTATGTGACCAGGCAGCC +
Preference number: 4 (lower is better)
Translates to: VVKSIFQRTHLASWHPHRCFYSC*VCDQAA
Trigger: GGCTGCCTGGTCACATACCCAGCAGGAGTAAAAGCA...CCTGTGTGGGTGCCAGGAAGCCAAATGGGTTCTCTGGAAGATGCTTTTAACCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR CCA 90 bp TACCCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGTTGACAACCAGCCCCTaGTCACTGATGTGCTCACCG +
Preference number: 4 (lower is better)
Translates to: YPVRDGADTTKLLSLAMVLTTSP*SLMCSP
Trigger: CGGTGAGCACATCAGTGACCAGGGGCTGGTTGTCAA...CACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGGGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp AATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCCGTTGACAACCAGCCCCTaGTCACTGATGTGCTCACCG +
Preference number: 4 (lower is better)
Translates to: NCGGNDLGMGGTVWNNAPLTTSP*SLMCSP
Trigger: CGGTGAGCACATCAGTGACCAGGGGCTGGTTGTCAA...CGGAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CCA 90 bp TGGAGCCACATGTTCCTGAACAGTGAAGGAGAACAAAGGTCAAGAACTGATGGAGCAAGATGGCCCGTGTaGTGCAGGCTGCCCACAATG +
Preference number: 4 (lower is better)
Translates to: WSHMFLNSEGEQRSRTDGARWPV*CRLPTM
Trigger: CATTGTGGGCAGCCTGCACCACACGGGCCATCTTGC...TCCATCAGTTCTTGACCTTTGTTCTCCTTCACTGTTCAGGAACATGTGGCTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp AATACCACAGTCTGCGCCCATGTTTCCTCTAACAACATTATATCATTCCTCCACGTGGGGAGACTTTCCTaGCTGCCGGGCCTCTGCGTG +
Preference number: 4 (lower is better)
Translates to: NTTVCAHVSSNNIISFLHVGRLS*LPGLCV
Trigger: CACGCAGAGGCCCGGCAGCCAGGAAAGTCTCCCCAC...GTGGAGGAATGATATAATGTTGTTAGAGGAAACATGGGCGCAGACTGTGGTATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp TCTCACCCAGGTGCCAAGACCGGCTTTCTGAAAGGCCTTGAAGAGCTGCTGTTTAGGAGCAAGGAAGGTTaGCAGTATGCTGACTTTGTC +
Preference number: 4 (lower is better)
Translates to: SHPGAKTGFLKGLEELLFRSKEG*QYADFV
Trigger: GACAAAGTCAGCATACTGTCAACCTTCCTTGCTCCT...AAACAGCAGCTCTTCAAGGCCTTTCAGAAAGCCGGTCTTGGCACCTGGGTGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp CAGCCCGACCCAAACTCAAACCTAGTCTCTCATCCACACATGGAGCCACATGTTCCAAGCCTTTGGTCATaGCGATTCCTGCCAGTGTTT +
Preference number: 4 (lower is better)
Translates to: QPDPNSNLVSHPHMEPHVPSLWS*RFLPVF
Trigger: AAACACTGGCAGGAATCGTCATGACCAAAGGCTTGG...AACATGTGGCTCCATGTGTGGATGAGAGACTAGGTTTGAGTTTGGGTCGGGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp CCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATCTGTGCAGGACATGGTaGTTAGCTGCTCCCCCAATA +
Preference number: 4 (lower is better)
Translates to: PVRDGADTTKLLSLAMVDLCRTW*LAAPPI
Trigger: TATTGGGGGAGCAGCTAATCACCATGTCCTGCACAG...ATCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp AGAATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCACAGGCTCGATGAAGTaGCAGAGGAGAGCGCCTTGT +
Preference number: 4 (lower is better)
Translates to: RIVGEMTWGWEELYGTMLTGSMK*QRRAPC
Trigger: ACAAGGCGCTCTCCTCTGTCACTTCATCGAGCCTGT...GAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp GGAAATACGATGGAATTTTCTCCAGGTTTTGATACTGTACATTTCCCTGCAGGGGCCCTCCAGACCCTCTaGCACTCCCCAGGACAGATG +
Preference number: 4 (lower is better)
Translates to: GNTMEFSPGFDTVHFPAGALQTL*HSPGQM
Trigger: CATCTGTCCTGGGGAGTGGCAGAGGGTCTGGAGGGC...CCCTGCAGGGAAATGTACAGTATCAAAACCTGGAGAAAATTCCATCGTATTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp TGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGGATGGCTGTAAGAGATCAGCTGGAGTTTaGAGAAATGTCCCCCATTTC +
Preference number: 4 (lower is better)
Translates to: CTAWMCGAAGAGVMDGCKRSAGV*RNVPHF
Trigger: GAAATGGGGGACATTTCTGCAAACTCCAGCTGATCT...CTTACAGCCATCCATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp TTCCTGAACAGTGAAGGAGAACAAAGGTCAAGAACTGATGGACACACCACACCACCAGGCTTCAGCTCATaGAGCTGGACCAGCGCATTC +
Preference number: 4 (lower is better)
Translates to: FLNSEGEQRSRTDGHTTPPGFSS*SWTSAF
Trigger: GAATGCGCTGGTCCAGCTGCATGAGCTGAAGCCTGG...TGGTGTGGTGTGTCCATCAGTTCTTGACCTTTGTTCTCCTTCACTGTTCAGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp AGAATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCCAGGGCCATTTCTGCTaGCCGCATCTTGGCCTTCTT +
Preference number: 4 (lower is better)
Translates to: RIVGEMTWGWEELYGTMLQGHFC*PHLGLL
Trigger: AAGAAGGCCAAGATGCGGGCAGCAGAAATGGCCCTG...GAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp AATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCCGAAGGCATTGGGGAACTaGACAAAGGACTTCAGGGCC +
Preference number: 4 (lower is better)
Translates to: NCGGNDLGMGGTVWNNAPKALGN*TKDFRA
Trigger: GGCCCTGAAGTCCTTTGTGCAGTTCCCCAATGCCTT...CGGAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp AATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCCGATATCGAAGAGGGCCTaGAAGGCAGCTTGTGCTGCT +
Preference number: 4 (lower is better)
Translates to: NCGGNDLGMGGTVWNNAPISKRA*KAACAA
Trigger: AGCAGCACAAGCTGCCTTGCAGGCCCTCTTCGATAT...CGGAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp CAGCCCGACCCAAACTCAAACCTAGTCTCTCATCCACACATGGAGCCACATGTTCCTGTGGCAAGAGGTTaGTTTTACTCCTGCTGGGTA +
Preference number: 4 (lower is better)
Translates to: QPDPNSNLVSHPHMEPHVPVARG*FYSCWV
Trigger: TACCCAGCAGGAGTAAAAGCAACCTCTTGCCACAGG...AACATGTGGCTCCATGTGTGGATGAGAGACTAGGTTTGAGTTTGGGTCGGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp CAGCCCGACCCAAACTCAAACCTAGTCTCTCATCCACACATGGAGCCACATGTTCTGGGACACAGAGTCTaGAAAATCCTGTGGCAAGAG +
Preference number: 4 (lower is better)
Translates to: QPDPNSNLVSHPHMEPHVLGHRV*KILWQE
Trigger: CTCTTGCCACAGGATTTTGCAGACTCTGTGTCCCAG...AACATGTGGCTCCATGTGTGGATGAGAGACTAGGTTTGAGTTTGGGTCGGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp CCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATCCCTGGTCACTGATGTaGTCACCGCTGATACACTTG +
Preference number: 4 (lower is better)
Translates to: PVRDGADTTKLLSLAMVDPWSLM*SPLIHL
Trigger: CAAGTGTATCAGCGGTGAGCACATCAGTGACCAGGG...ATCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp TGGGTAGTGGTTAATCACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATTCTCCAGGTCGGCGCTaGCCACGACCCAGTTGGCAC +
Preference number: 4 (lower is better)
Translates to: WVVVNHPTVVTSVAIIIYSPGRR*PRPSWH
Trigger: GTGCCAACTGGGTCGTGGGCAGCGCCGACCTGGAGA...ATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGTGATTAACCACTACCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp GTCTGTTTCCTTATTTCCCCACATCACTCATCACCTTCATACTTTGAGGAAGAATCTCCAGGTCGGCGCTaGCCACGACCCAGTTGGCAC +
Preference number: 4 (lower is better)
Translates to: VCFLISPHHSSPSYFEEESPGRR*PRPSWH
Trigger: GTGCCAACTGGGTCGTGGGCAGCGCCGACCTGGAGA...TTCTTCCTCAAAGTATGAAGGTGATGAGTGATGTGGGGAAATAAGGAAACAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp AGAATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCCCTACCATGCAGCCGTaGCCACCAAGCAGAAAACAC +
Preference number: 4 (lower is better)
Translates to: RIVGEMTWGWEELYGTMLPTMQP*PPSRKH
Trigger: GTGTTTTCTGCTTGGTGGGCACGGCTGCATGGTAGG...GAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CCA 90 bp AATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCCGTGCTTTTACTCCTGCTaGGTATGTGACCAGGCAGCC +
Preference number: 4 (lower is better)
Translates to: NCGGNDLGMGGTVWNNAPCFYSC*VCDQAA
Trigger: GGCTGCCTGGTCACATACCCAGCAGGAGTAAAAGCA...CGGAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CCA 90 bp ACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATAAAAGCAATGGAGAGGGTGGGGAGACTTTCCTaGCTGCCGGGCCTCTGCGTG +
Preference number: 4 (lower is better)
Translates to: TLQLSLLWLSLSIKAMERVGRLS*LPGLCV
Trigger: CACGCAGAGGCCCGGCAGCCAGGAAAGTCTCCCCAC...CCTCTCCATTGCTTTTATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp AGAATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCCAGTTGGCACTGAAGTaGGGAGACTTTCCTGGCTGC +
Preference number: 4 (lower is better)
Translates to: RIVGEMTWGWEELYGTMLQLALK*GDFPGC
Trigger: GCAGCCAGGAAAGTCTCCCCACTTCAGTGCCAACTG...GAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CCA 90 bp AAGCTGGGAACTCAACCAGAGTCCTCTATAGAAGCAGCAAAGCTCCTAACTGCTTGTGAGCCCCCTGCTTaGCCTCACAGTACATGGATG +
Preference number: 4 (lower is better)
Translates to: KLGTQPESSIEAAKLLTACEPPA*PHSTWM
Trigger: CATCCATGTACTGTGAGGCCAAGCAGGGGGCTCACA...AGCAGTTAGGAGCTTTGCTGCTTCTATAGAGGACTCTGGTTGAGTTCCCAGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR CCA 90 bp AAGCTGGGAACTCAACCAGAGTCCTCTATAGAAGCAGCAAAGCTCCTAACTGCTCTGATCTTGCTCCGGTaGTTTTCTCACCCAGGTGCC +
Preference number: 4 (lower is better)
Translates to: KLGTQPESSIEAAKLLTALILLR*FSHPGA
Trigger: GGCACCTGGGTGAGAAAACCACCGGAGCAAGATCAG...AGCAGTTAGGAGCTTTGCTGCTTCTATAGAGGACTCTGGTTGAGTTCCCAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR TCA 90 bp TGGTTAAAAGCATCTTCCAGAGAACCCATTTGGCTTCCTGGCACCCACACAGGGAGGAGCAAGGAAGGTTaGCAGTATGCTGACTTTGTC +
Preference number: 4 (lower is better)
Translates to: WLKASSREPIWLPGTHTGRSKEG*QYADFV
Trigger: GACAAAGTCAGCATACTGTCAACCTTCCTTGCTCCT...CCCTGTGTGGGTGCCAGGAAGCCAAATGGGTTCTCTGGAAGATGCTTTTAACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR TCA 90 bp CCATGGCTTCTCTCTGGTGGCTTCCACCTATGTCATTTTGCGTCTGTTTCCTTATCAGTATCAACGGGATaGCAGCCTGGGAAGTCTTCG +
Preference number: 4 (lower is better)
Translates to: PWLLSGGFHLCHFASVSLSVSTG*QPGKSS
Trigger: CGAAGACTTCCCAGGCTGTCATCCCGTTGATACTGA...TAAGGAAACAGACGCAAAATGACATAGGTGGAAGCCACCAGAGAGAAGCCATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp GTGGTTAAAAGCATCTTCCAGAGAACCCATTTGGCTTCCTGGCACCCACACAGGTTTCATATGGAGAGTTaGCTCTGGCATCTCCACAGG +
Preference number: 4 (lower is better)
Translates to: VVKSIFQRTHLASWHPHRFHMES*LWHLHR
Trigger: CCTGTGGAGATGCCAGAGTCAACTCTCCATATGAAA...CCTGTGTGGGTGCCAGGAAGCCAAATGGGTTCTCTGGAAGATGCTTTTAACCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR TCA 90 bp TTCCTGAACAGTGAAGGAGAACAAAGGTCAAGAACTGATGGACACACCACACCAACAGGCTCGATGAAGTaGCAGAGGAGAGCGCCTTGT +
Preference number: 4 (lower is better)
Translates to: FLNSEGEQRSRTDGHTTPTGSMK*QRRAPC
Trigger: ACAAGGCGCTCTCCTCTGTCACTTCATCGAGCCTGT...TGGTGTGGTGTGTCCATCAGTTCTTGACCTTTGTTCTCCTTCACTGTTCAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp CCCCACATCACTCATCACCTTCATACTTTGAGGAAGAAGTTTAACAAGAGCCACCCAGGCTTCAGCTCATaGAGCTGGACCAGCGCATTC +
Preference number: 4 (lower is better)
Translates to: PHITHHLHTLRKKFNKSHPGFSS*SWTSAF
Trigger: GAATGCGCTGGTCCAGCTGCATGAGCTGAAGCCTGG...GTGGCTCTTGTTAAACTTCTTCCTCAAAGTATGAAGGTGATGAGTGATGTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp TTCCTGAACAGTGAAGGAGAACAAAGGTCAAGAACTGATGGACACACCACACCACTTCAGGGCCATTTCTaGTGCCCGCATCTTGGCCTT +
Preference number: 4 (lower is better)
Translates to: FLNSEGEQRSRTDGHTTPLQGHF*CPHLGL
Trigger: AAGGCCAAGATGCGGGCAGCAGAAATGGCCCTGAAG...TGGTGTGGTGTGTCCATCAGTTCTTGACCTTTGTTCTCCTTCACTGTTCAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp AAGCTGGGAACTCAACCAGAGTCCTCTATAGAAGCAGCAAAGCTCCTAACTGCTAAGGCATTGGGGAACTaGACAAAGGACTTCAGGGCC +
Preference number: 4 (lower is better)
Translates to: KLGTQPESSIEAAKLLTAKALGN*TKDFRA
Trigger: GGCCCTGAAGTCCTTTGTGCAGTTCCCCAATGCCTT...AGCAGTTAGGAGCTTTGCTGCTTCTATAGAGGACTCTGGTTGAGTTCCCAGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp GGAAATACGATGGAATTTTCTCCAGGTTTTGATACTGTACATTTCCCTGCAGGGCTGCAAGGCAGCTTGTaGTGCTTGGCCCTTGGCCAG +
Preference number: 4 (lower is better)
Translates to: GNTMEFSPGFDTVHFPAGLQGSL*CLALGQ
Trigger: CTGGCCAAGGGCCAAGCAGCACAAGCTGCCTTGCAG...CCCTGCAGGGAAATGTACAGTATCAAAACCTGGAGAAAATTCCATCGTATTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp AATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCCGGACAGAACGATGACCTaGGCTTGTTTGGTGTCCAAG +
Preference number: 4 (lower is better)
Translates to: NCGGNDLGMGGTVWNNAPDRTMT*ACLVSK
Trigger: CTTGGACACCAAACAAGCGCAGGTCATCGTTCTGTC...CGGAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CCA 90 bp TGGAGCCACATGTTCCTGAACAGTGAAGGAGAACAAAGGTCAAGAACTGATGGAGGACCAGCGCATTCTTaGGTGTCACAGACCAGGAGA +
Preference number: 4 (lower is better)
Translates to: WSHMFLNSEGEQRSRTDGGPAHS*VSQTRR
Trigger: TCTCCTGGTCTGTGACACCCAAGAATGCGCTGGTCC...TCCATCAGTTCTTGACCTTTGTTCTCCTTCACTGTTCAGGAACATGTGGCTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp GCTTATCTTGAAATGTCATATAAACTTGTGCTGGTGAGACTTGATCACACCACTAGCCACTGCGAAAACTaGGGCGTGCACCGGGCCCGT +
Preference number: 4 (lower is better)
Translates to: AYLEMSYKLVLVRLDHTTSHCEN*GVHRAR
Trigger: ACGGGCCCGGTGCACGCCCCAGTTTTCGCAGTGGCT...AGTGGTGTGATCAAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp TGTTCACCTGTGGCTTATCTTGAAATGTCATATAAACTTGTGCTGGTGAGACTTCTGCCCATGGCCAGGTaGGCCTGGAAGGCATTGGGG +
Preference number: 4 (lower is better)
Translates to: CSPVAYLEMSYKLVLVRLLPMAR*AWKALG
Trigger: CCCCAATGCCTTCCAGGCCCACCTGGCCATGGGCAG...AAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGCCACAGGTGAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp CAGCCCGACCCAAACTCAAACCTAGTCTCTCATCCACACATGGAGCCACATGTTTTCTGTGTGACCAGCTaGGACACAGAGTCTGCAAAA +
Preference number: 4 (lower is better)
Translates to: QPDPNSNLVSHPHMEPHVFCVTS*DTESAK
Trigger: TTTTGCAGACTCTGTGTCCCAGCTGGTCACACAGAA...AACATGTGGCTCCATGTGTGGATGAGAGACTAGGTTTGAGTTTGGGTCGGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp CCATGGCTTCTCTCTGGTGGCTTCCACCTATGTCATTTTGCGTCTGTTTCCTTAATTCCCTCCATCCTGTaGCTCATGACCCGTGCAAGA +
Preference number: 4 (lower is better)
Translates to: PWLLSGGFHLCHFASVSLIPSIL*LMTRAR
Trigger: TCTTGCACGGGTCATGAGCCACAGGATGGAGGGAAT...TAAGGAAACAGACGCAAAATGACATAGGTGGAAGCCACCAGAGAGAAGCCATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CCA 90 bp CCATGGCTTCTCTCTGGTGGCTTCCACCTATGTCATTTTGCGTCTGTTTCCTTACTCACAGTACATGGATaGTGTGTCTCCATGGCTGGG +
Preference number: 4 (lower is better)
Translates to: PWLLSGGFHLCHFASVSLLTVHG*CVSMAG
Trigger: CCCAGCCATGGAGACACACCATCCATGTACTGTGAG...TAAGGAAACAGACGCAAAATGACATAGGTGGAAGCCACCAGAGAGAAGCCATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp ATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTAGGTTGACAGTATGCTaGCTTTGTCTTTCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: ICPHLCRCTAWMCGAAGARLTVC*LCLSSW
Trigger: CCAAGAGGAAAGACAAAGTCAGCATACTGTCAACCT...AGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp AATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCCGTTTCATATGGAGAGTTaGCTCTGGCATCTCCACAGG +
Preference number: 4 (lower is better)
Translates to: NCGGNDLGMGGTVWNNAPFHMES*LWHLHR
Trigger: CCTGTGGAGATGCCAGAGTCAACTCTCCATATGAAA...CGGAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp CTGTGCCTAACCGTTGAAGGATTACAGCTAAGCCATATTCAGCTCTCAAGGTTTGCCCTCGGAACTTCCTaGCGATGTGTTTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: LCLTVEGLQLSHIQLSRFALGTS*RCVCCC
Trigger: ACAGCAGCAAACACATCGTCAGGAAGTTCCGAGGGC...AAACCTTGAGAGCTGAATATGGCTTAGCTGTAATCCTTCAACGGTTAGGCACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR GCA 90 bp CTGTGCCTAACCGTTGAAGGATTACAGCTAAGCCATATTCAGCTCTCAAGGTTTCAGGGCCATTTCTGCTaGCCGCATCTTGGCCTTCTT +
Preference number: 4 (lower is better)
Translates to: LCLTVEGLQLSHIQLSRFQGHFC*PHLGLL
Trigger: AAGAAGGCCAAGATGCGGGCAGCAGAAATGGCCCTG...AAACCTTGAGAGCTGAATATGGCTTAGCTGTAATCCTTCAACGGTTAGGCACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR GCA 90 bp GCTTATCTTGAAATGTCATATAAACTTGTGCTGGTGAGACTTGATCACACCACTACGGGCTGGTACTACTaGCCATGGCCAGGTGGGCCT +
Preference number: 4 (lower is better)
Translates to: AYLEMSYKLVLVRLDHTTTGWYY*PWPGGP
Trigger: AGGCCCACCTGGCCATGGGCAGTAGTACCAGCCCGT...AGTGGTGTGATCAAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp AAGCTGGGAACTCAACCAGAGTCCTCTATAGAAGCAGCAAAGCTCCTAACTGCTCTGGGACACAGAGTCTaGAAAATCCTGTGGCAAGAG +
Preference number: 4 (lower is better)
Translates to: KLGTQPESSIEAAKLLTALGHRV*KILWQE
Trigger: CTCTTGCCACAGGATTTTGCAGACTCTGTGTCCCAG...AGCAGTTAGGAGCTTTGCTGCTTCTATAGAGGACTCTGGTTGAGTTCCCAGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp TCTATGATAATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTATCTTGGTGCGCAGGTaGCCTCGGAACTTCCTGACG +
Preference number: 4 (lower is better)
Translates to: SMIICPHLCRCTAWMCGAILVRR*PRNFLT
Trigger: CGTCAGGAAGTTCCGAGGGCACCTGCGCACCAAGAT...AGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAATTATCATAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp ACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATAAAAGCAATGGAGAGGGTGGCTCATGACCCGTaGAAGATGGCCCGTGTGGTG +
Preference number: 4 (lower is better)
Translates to: TLQLSLLWLSLSIKAMERVAHDP*KMARVV
Trigger: CACCACACGGGCCATCTTGCACGGGTCATGAGCCAC...CCTCTCCATTGCTTTTATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp TGGCATGATTCTGTCCCTTTAATTTTGTCAGCTATGGCAAGTCATCATTATCTTGTGGGGAGACTTTCCTaGCTGCCGGGCCTCTGCGTG +
Preference number: 4 (lower is better)
Translates to: WHDSVPLILSAMASHHYLVGRLS*LPGLCV
Trigger: CACGCAGAGGCCCGGCAGCCAGGAAAGTCTCCCCAC...AAGATAATGATGACTTGCCATAGCTGACAAAATTAAAGGGACAGAATCATGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp AAGCTGGGAACTCAACCAGAGTCCTCTATAGAAGCAGCAAAGCTCCTAACTGCTCAGGACTTAGGTACTTaGAAGGAGCAAGGAAGGTTG +
Preference number: 4 (lower is better)
Translates to: KLGTQPESSIEAAKLLTAQDLGT*KEQGRL
Trigger: CAACCTTCCTTGCTCCTTTCAAGTACCTAAGTCCTG...AGCAGTTAGGAGCTTTGCTGCTTCTATAGAGGACTCTGGTTGAGTTCCCAGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp ACTCACTTATCAGGTATCACCAAAGTGCAATTTACAGAACTTAGAAGAGGCAAACACCGGGCCCGTCTGTaGCACCATTCGGTACTGCAG +
Preference number: 4 (lower is better)
Translates to: THLSGITKVQFTELRRGKHRARL*HHSVLQ
Trigger: CTGCAGTACCGAATGGTGTCACAGACGGGCCCGGTG...TTTGCCTCTTCTAAGTTCTGTAAATTGCACTTTGGTGATACCTGATAAGTGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp TGGGTAGTGGTTAATCACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATGGTACACAGGCTCGATaGAGTGACAGAGGAGAGCGC +
Preference number: 4 (lower is better)
Translates to: WVVVNHPTVVTSVAIIIYGTQAR*SDRGER
Trigger: GCGCTCTCCTCTGTCACTTCATCGAGCCTGTGTACC...ATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGTGATTAACCACTACCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp TTGTCTTGTAGCATTAAAGAATTCTTTTACCTCTACAAACAAATGTGGATCCCCGCGAAAACTGGGGCGTaGACCGGGCCCGTCTGTGAC +
Preference number: 4 (lower is better)
Translates to: LSCSIKEFFYLYKQMWIPAKTGA*TGPVCD
Trigger: GTCACAGACGGGCCCGGTGCACGCCCCAGTTTTCGC...GGGGATCCACATTTGTTTGTAGAGGTAAAAGAATTCTTTAATGCTACAAGACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR GCA 90 bp TGGGTAGTGGTTAATCACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATTGGCCAGCTTCTTGCTaGGTCCAGAGCCTTCGAACG +
Preference number: 4 (lower is better)
Translates to: WVVVNHPTVVTSVAIIIYWPASC*VQSLRT
Trigger: CGTTCGAAGGCTCTGGACGCAGCAAGAAGCTGGCCA...ATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGTGATTAACCACTACCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp TTCTGGCTGATAGAAATTGGGTGCCCATGTGAAAGAGGCACTAGAATTCAGATAGGTCATGACGATTCCTaGCAGTGTTTTGTGGCGGGC +
Preference number: 4 (lower is better)
Translates to: FWLIEIGCPCERGTRIQIGHDDS*QCFVAG
Trigger: GCCCGCCACAAAACACTGGCAGGAATCGTCATGACC...TATCTGAATTCTAGTGCCTCTTTCACATGGGCACCCAATTTCTATCAGCCAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp GGAAATACGATGGAATTTTCTCCAGGTTTTGATACTGTACATTTCCCTGCAGGGCAGACTCAATCTTGGTaGGCAGGTGCCCTCGGAACT +
Preference number: 4 (lower is better)
Translates to: GNTMEFSPGFDTVHFPAGQTQSW*AGALGT
Trigger: AGTTCCGAGGGCACCTGCGCACCAAGATTGAGTCTG...CCCTGCAGGGAAATGTACAGTATCAAAACCTGGAGAAAATTCCATCGTATTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp TGGGTAGTGGTTAATCACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATAGATGGCCCGTGTGGTaGAGGCTGCCCACAATGATG +
Preference number: 4 (lower is better)
Translates to: WVVVNHPTVVTSVAIIIYRWPVW*RLPTMM
Trigger: CATCATTGTGGGCAGCCTGCACCACACGGGCCATCT...ATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGTGATTAACCACTACCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp ACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATAAAAGCAATGGAGAGGGCAGCTTGTGCTGCTTaGCCCTTGGCCAGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: TLQLSLLWLSLSIKAMERAACAA*PLASFL
Trigger: CAAGAAGCTGGCCAAGGGCCAAGCAGCACAAGCTGC...CCTCTCCATTGCTTTTATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp GGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATGGGGTTCTTGGATGTGGTGATTTCATATaGAGAGTTGACTCTGGCATC +
Preference number: 4 (lower is better)
Translates to: GADTTKLLSLAMVDGVLGCGDFI*RVDSGI
Trigger: GATGCCAGAGTCAACTCTCCATATGAAATCACCACA...TCCAAGAACCCCATCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp ATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTTGTGGTGATTTCATATaGAGAGTTGACTCTGGCATC +
Preference number: 4 (lower is better)
Translates to: ICPHLCRCTAWMCGAAGACGDFI*RVDSGI
Trigger: GATGCCAGAGTCAACTCTCCATATGAAATCACCACA...AGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp ACACTCACTTATCAGGTATCACCAAAGTGCAATTTACAGAACTTAGAAGAGGCAGCAAGATGGCCCGTGTaGTGCAGGCTGCCCACAATG +
Preference number: 4 (lower is better)
Translates to: TLTYQVSPKCNLQNLEEAARWPV*CRLPTM
Trigger: CATTGTGGGCAGCCTGCACCACACGGGCCATCTTGC...TGCCTCTTCTAAGTTCTGTAAATTGCACTTTGGTGATACCTGATAAGTGAGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp ACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATAAAAGCAATGGAGAGGCACGGAACTTCTGTGTaGCCAGCTGGGACACAGAGT +
Preference number: 4 (lower is better)
Translates to: TLQLSLLWLSLSIKAMERHGTSV*PAGTQS
Trigger: ACTCTGTGTCCCAGCTGGTCACACAGAAGTTCCGTG...CCTCTCCATTGCTTTTATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp CATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGCTTCCTTTAAACGTATaGATATTGATCTCTCGGGGT +
Preference number: 4 (lower is better)
Translates to: HLCRCTAWMCGAAGAGVMLPLNV*ILISRG
Trigger: ACCCCGAGAGATCAATATTCATACGTTTAAAGGAAG...CATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp TTCTGGCTGATAGAAATTGGGTGCCCATGTGAAAGAGGCACTAGAATTCAGATACTGTGCAGGACATGGTaGTTAGCTGCTCCCCCAATA +
Preference number: 4 (lower is better)
Translates to: FWLIEIGCPCERGTRIQILCRTW*LAAPPI
Trigger: TATTGGGGGAGCAGCTAATCACCATGTCCTGCACAG...TATCTGAATTCTAGTGCCTCTTTCACATGGGCACCCAATTTCTATCAGCCAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp CACTCCTTCATGAACTATGTAAACATCCAGAGCTGGGGTAGTTTTAGAAATGTTGGTACACAGGCTCGATaGAGTGACAGAGGAGAGCGC +
Preference number: 4 (lower is better)
Translates to: HSFMNYVNIQSWGSFRNVGTQAR*SDRGER
Trigger: GCGCTCTCCTCTGTCACTTCATCGAGCCTGTGTACC...AACATTTCTAAAACTACCCCAGCTCTGGATGTTTACATAGTTCATGAAGGAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp TGTTCACCTGTGGCTTATCTTGAAATGTCATATAAACTTGTGCTGGTGAGACTTGCAGGCTGCCCACAATaGTGCTGTGGAGGTACACAG +
Preference number: 4 (lower is better)
Translates to: CSPVAYLEMSYKLVLVRLAGCPQ*CCGGTQ
Trigger: CTGTGTACCTCCACAGCATCATTGTGGGCAGCCTGC...AAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGCCACAGGTGAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp TTGTCTTGTAGCATTAAAGAATTCTTTTACCTCTACAAACAAATGTGGATCCCCTGCCGGGCCTCTGCGTaGCTCACGCCACTAAGGAGA +
Preference number: 4 (lower is better)
Translates to: LSCSIKEFFYLYKQMWIPCRASA*LTPLRR
Trigger: TCTCCTTAGTGGCGTGAGTCACGCAGAGGCCCGGCA...GGGGATCCACATTTGTTTGTAGAGGTAAAAGAATTCTTTAATGCTACAAGACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR GCA 90 bp TATAAAAGCAATGGAGAGGTTGTCATCAAGTGGAAAGGCTTGGGTTTGTTTGCACTTCAGGGCCATTTCTaGTGCCCGCATCTTGGCCTT +
Preference number: 4 (lower is better)
Translates to: YKSNGEVVIKWKGLGLFALQGHF*CPHLGL
Trigger: AAGGCCAAGATGCGGGCAGCAGAAATGGCCCTGAAG...TGCAAACAAACCCAAGCCTTTCCACTTGATGACAACCTCTCCATTGCTTTTATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp AGTGGTCACAGCAGTCAAATGGTAGCACATAAAAAGAAAGACCTTTTCTGTAGTTGGCCAGCTTCTTGCTaGGTCCAGAGCCTTCGAACG +
Preference number: 4 (lower is better)
Translates to: SGHSSQMVAHKKKDLFCSWPASC*VQSLRT
Trigger: CGTTCGAAGGCTCTGGACGCAGCAAGAAGCTGGCCA...ACTACAGAAAAGGTCTTTCTTTTTATGTGCTACCATTTGACTGCTGTGACCACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp TGGGTAGTGGTTAATCACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATGGTCATGACGATTCCTaGCAGTGTTTTGTGGCGGGC +
Preference number: 4 (lower is better)
Translates to: WVVVNHPTVVTSVAIIIYGHDDS*QCFVAG
Trigger: GCCCGCCACAAAACACTGGCAGGAATCGTCATGACC...ATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGTGATTAACCACTACCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp GGAAATACGATGGAATTTTCTCCAGGTTTTGATACTGTACATTTCCCTGCAGGGCTCCACAGGGGGATGTaGTCACGTAGAGATGGAAGA +
Preference number: 4 (lower is better)
Translates to: GNTMEFSPGFDTVHFPAGLHRGM*SRRDGR
Trigger: TCTTCCATCTCTACGTGAGCACATCCCCCTGTGGAG...CCCTGCAGGGAAATGTACAGTATCAAAACCTGGAGAAAATTCCATCGTATTTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp TGTTCACCTGTGGCTTATCTTGAAATGTCATATAAACTTGTGCTGGTGAGACTTAGATGGCCCGTGTGGTaGAGGCTGCCCACAATGATG +
Preference number: 4 (lower is better)
Translates to: CSPVAYLEMSYKLVLVRLRWPVW*RLPTMM
Trigger: CATCATTGTGGGCAGCCTGCACCACACGGGCCATCT...AAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGCCACAGGTGAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp TGGGTAGTGGTTAATCACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATCCTACCATGCAGCCGTaGCCACCAAGCAGAAAACAC +
Preference number: 4 (lower is better)
Translates to: WVVVNHPTVVTSVAIIIYPTMQP*PPSRKH
Trigger: GTGTTTTCTGCTTGGTGGGCACGGCTGCATGGTAGG...ATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGTGATTAACCACTACCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR CCA 90 bp GCTTATCTTGAAATGTCATATAAACTTGTGCTGGTGAGACTTGATCACACCACTGCAGCTTGTGCTGCTTaGCCCTTGGCCAGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: AYLEMSYKLVLVRLDHTTAACAA*PLASFL
Trigger: CAAGAAGCTGGCCAAGGGCCAAGCAGCACAAGCTGC...AGTGGTGTGATCAAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp TGGCATGATTCTGTCCCTTTAATTTTGTCAGCTATGGCAAGTCATCATTATCTTCCCCAGACTCAATCTTaGTGCGCAGGTGCCCTCGGA +
Preference number: 4 (lower is better)
Translates to: WHDSVPLILSAMASHHYLPQTQS*CAGALG
Trigger: TCCGAGGGCACCTGCGCACCAAGATTGAGTCTGGGG...AAGATAATGATGACTTGCCATAGCTGACAAAATTAAAGGGACAGAATCATGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp GTCTGTTTCCTTATTTCCCCACATCACTCATCACCTTCATACTTTGAGGAAGAAGATGGTGTGTCTCCATaGCTGGGGATCCGTGTGCTT +
Preference number: 4 (lower is better)
Translates to: VCFLISPHHSSPSYFEEEDGVSP*LGIRVL
Trigger: AAGCACACGGATCCCCAGCCATGGAGACACACCATC...TTCTTCCTCAAAGTATGAAGGTGATGAGTGATGTGGGGAAATAAGGAAACAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR CAA 72 bp AATAATGAGAACAATACAGCATTCCTGTTGGGTTCTTaGGAGTTGGGGAGCCCCTGGCTTTCCTGTTCACCT +
Preference number: 4 (lower is better)
Translates to: NNENNTAFLLGS*ELGSPWLSCSP
Trigger: AGGTGAACAGGAAAGCCAGGGGCTCCCCAACTCCAAAGAACCCAACAGGAATGCTGTATTGTTCTCATTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
3UTR CAA 72 bp CATGGCTTCTCTCTGGTGGCTTCCACCTATGTCATTTaGCGTCTGTTTCCTTATTTCCCCACATCACTCATC +
Preference number: 4 (lower is better)
Translates to: HGFSLVASTYVI*RLFPYFPTSLI
Trigger: GATGAGTGATGTGGGGAAATAAGGAAACAGACGCAAAATGACATAGGTGGAAGCCACCAGAGAGAAGCCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
3UTR CAA 72 bp GTGAATCTAAAGAAGCAGAATTGTGGGGGAAATGACTaGGGGATGGGAGGAACTGTATGGAACAATGCTCCG +
Preference number: 4 (lower is better)
Translates to: VNLKKQNCGGND*GMGGTVWNNAP
Trigger: CGGAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATTCTGCTTCTTTAGATTCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp TATAAAAGCAATGGAGAGGTTGTCATCAAGTGGAAAGGCTTGGGTTTGTTTGCATCAGTATCAACGGGATaGCAGCCTGGGAAGTCTTCG +
Preference number: 4 (lower is better)
Translates to: YKSNGEVVIKWKGLGLFASVSTG*QPGKSS
Trigger: CGAAGACTTCCCAGGCTGTCATCCCGTTGATACTGA...TGCAAACAAACCCAAGCCTTTCCACTTGATGACAACCTCTCCATTGCTTTTATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp TTGTCACTTCTGTGGCTATCATTATCTATAAAAGCAATGGAGAGGTTGTCATCACCTTGGCCAGCTTCTTaGTGCGTCCAGAGCCTTCGA +
Preference number: 4 (lower is better)
Translates to: LSLLWLSLSIKAMERLSSPWPAS*CVQSLR
Trigger: TCGAAGGCTCTGGACGCAGCAAGAAGCTGGCCAAGG...TGATGACAACCTCTCCATTGCTTTTATAGATAATGATAGCCACAGAAGTGACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp TGGGTAGTGGTTAATCACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATATATCGAAGAGGGCCTaGAAGGCAGCTTGTGCTGCT +
Preference number: 4 (lower is better)
Translates to: WVVVNHPTVVTSVAIIIYISKRA*KAACAA
Trigger: AGCAGCACAAGCTGCCTTGCAGGCCCTCTTCGATAT...ATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGTGATTAACCACTACCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp GCTTATCTTGAAATGTCATATAAACTTGTGCTGGTGAGACTTGATCACACCACTCAGACTCAATCTTGGTaGGCAGGTGCCCTCGGAACT +
Preference number: 4 (lower is better)
Translates to: AYLEMSYKLVLVRLDHTTQTQSW*AGALGT
Trigger: AGTTCCGAGGGCACCTGCGCACCAAGATTGAGTCTG...AGTGGTGTGATCAAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp TATAAAAGCAATGGAGAGGTTGTCATCAAGTGGAAAGGCTTGGGTTTGTTTGCACTTAGCATGCAGCCGTaGCCACCAAGCAGAAAACAC +
Preference number: 4 (lower is better)
Translates to: YKSNGEVVIKWKGLGLFALSMQP*PPSRKH
Trigger: GTGTTTTCTGCTTGGTGGGCACGGCTGCATGCTAAG...TGCAAACAAACCCAAGCCTTTCCACTTGATGACAACCTCTCCATTGCTTTTATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp ACACTCACTTATCAGGTATCACCAAAGTGCAATTTACAGAACTTAGAAGAGGCAGGACCAGCGCATTCTTaGGTGTCACAGACCAGGAGA +
Preference number: 4 (lower is better)
Translates to: TLTYQVSPKCNLQNLEEAGPAHS*VSQTRR
Trigger: TCTCCTGGTCTGTGACACCCAAGAATGCGCTGGTCC...TGCCTCTTCTAAGTTCTGTAAATTGCACTTTGGTGATACCTGATAAGTGAGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CCA 90 bp TGTTCACCTGTGGCTTATCTTGAAATGTCATATAAACTTGTGCTGGTGAGACTTGGGCCTGGAAGGCATTaGGGAACTGCACAAAGGACT +
Preference number: 4 (lower is better)
Translates to: CSPVAYLEMSYKLVLVRLGPGRH*GTAQRT
Trigger: AGTCCTTTGTGCAGTTCCCCAATGCCTTCCAGGCCC...AAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGCCACAGGTGAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp TATAAAAGCAATGGAGAGGTTGTCATCAAGTGGAAAGGCTTGGGTTTGTTTGCATGCTTTTACTCCTGCTaGGTATGTGACCAGGCAGCC +
Preference number: 4 (lower is better)
Translates to: YKSNGEVVIKWKGLGLFACFYSC*VCDQAA
Trigger: GGCTGCCTGGTCACATACCCAGCAGGAGTAAAAGCA...TGCAAACAAACCCAAGCCTTTCCACTTGATGACAACCTCTCCATTGCTTTTATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp TGGGTAGTGGTTAATCACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATATTCCCTCCATCCTGTaGCTCATGACCCGTGCAAGA +
Preference number: 4 (lower is better)
Translates to: WVVVNHPTVVTSVAIIIYIPSIL*LMTRAR
Trigger: TCTTGCACGGGTCATGAGCCACAGGATGGAGGGAAT...ATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGTGATTAACCACTACCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp ACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATAAAAGCAATGGAGAGGATTCCCTCCATCCTGTaGCTCATGACCCGTGCAAGA +
Preference number: 4 (lower is better)
Translates to: TLQLSLLWLSLSIKAMERIPSIL*LMTRAR
Trigger: TCTTGCACGGGTCATGAGCCACAGGATGGAGGGAAT...CCTCTCCATTGCTTTTATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp GCTTATCTTGAAATGTCATATAAACTTGTGCTGGTGAGACTTGATCACACCACTCAGTTGGCACTGAAGTaGGGAGACTTTCCTGGCTGC +
Preference number: 4 (lower is better)
Translates to: AYLEMSYKLVLVRLDHTTQLALK*GDFPGC
Trigger: GCAGCCAGGAAAGTCTCCCCACTTCAGTGCCAACTG...AGTGGTGTGATCAAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp AATACCACAGTCTGCGCCCATGTTTCCTCTAACAACATTATATCATTCCTCCACTCTTGGACTTGCATTTaGGTTGACTGCTTAGCCCTC +
Preference number: 4 (lower is better)
Translates to: NTTVCAHVSSNNIISFLHSWTCI*VDCLAL
Trigger: GAGGGCTAAGCAGTCAACTCAAATGCAAGTCCAAGA...GTGGAGGAATGATATAATGTTGTTAGAGGAAACATGGGCGCAGACTGTGGTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp TGGGTAGTGGTTAATCACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATGACAGAACGATGACCTaGGCTTGTTTGGTGTCCAAG +
Preference number: 4 (lower is better)
Translates to: WVVVNHPTVVTSVAIIIYDRTMT*ACLVSK
Trigger: CTTGGACACCAAACAAGCGCAGGTCATCGTTCTGTC...ATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGTGATTAACCACTACCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp TCTATGATAATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTAGGTTGACAGTATGCTaGCTTTGTCTTTCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: SMIICPHLCRCTAWMCGARLTVC*LCLSSW
Trigger: CCAAGAGGAAAGACAAAGTCAGCATACTGTCAACCT...AGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAATTATCATAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp ACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATAAAAGCAATGGAGAGGCAGGACTTAGGTACTTaGAAGGAGCAAGGAAGGTTG +
Preference number: 4 (lower is better)
Translates to: TLQLSLLWLSLSIKAMERQDLGT*KEQGRL
Trigger: CAACCTTCCTTGCTCCTTTCAAGTACCTAAGTCCTG...CCTCTCCATTGCTTTTATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp TTGTCTTGTAGCATTAAAGAATTCTTTTACCTCTACAAACAAATGTGGATCCCCCACGGAACTTCTGTGTaGCCAGCTGGGACACAGAGT +
Preference number: 4 (lower is better)
Translates to: LSCSIKEFFYLYKQMWIPHGTSV*PAGTQS
Trigger: ACTCTGTGTCCCAGCTGGTCACACAGAAGTTCCGTG...GGGGATCCACATTTGTTTGTAGAGGTAAAAGAATTCTTTAATGCTACAAGACAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR GCA 90 bp TCTATGATAATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTAGATCAGCTGGAGTTTaGAGAAATGTCCCCCATTTC +
Preference number: 4 (lower is better)
Translates to: SMIICPHLCRCTAWMCGARSAGV*RNVPHF
Trigger: GAAATGGGGGACATTTCTGCAAACTCCAGCTGATCT...AGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAATTATCATAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR GCA 90 bp ACACTCACTTATCAGGTATCACCAAAGTGCAATTTACAGAACTTAGAAGAGGCACCTGTGGCAAGAGGTTaGTTTTACTCCTGCTGGGTA +
Preference number: 4 (lower is better)
Translates to: TLTYQVSPKCNLQNLEEAPVARG*FYSCWV
Trigger: TACCCAGCAGGAGTAAAAGCAACCTCTTGCCACAGG...TGCCTCTTCTAAGTTCTGTAAATTGCACTTTGGTGATACCTGATAAGTGAGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp AGTGGTCACAGCAGTCAAATGGTAGCACATAAAAAGAAAGACCTTTTCTGTAGTGACATGGTGATTAGCTaGTCCCCCAATAGGATGCCA +
Preference number: 4 (lower is better)
Translates to: SGHSSQMVAHKKKDLFCSDMVIS*SPNRMP
Trigger: TGGCATCCTATTGGGGGAGCAGCTAATCACCATGTC...ACTACAGAAAAGGTCTTTCTTTTTATGTGCTACCATTTGACTGCTGTGACCACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CCA 90 bp GTCTGTTTCCTTATTTCCCCACATCACTCATCACCTTCATACTTTGAGGAAGAACATCCTCTGTGTTTGTaGTGCCAGGACTTAGGTACT +
Preference number: 4 (lower is better)
Translates to: VCFLISPHHSSPSYFEEEHPLCL*CQDLGT
Trigger: AGTACCTAAGTCCTGGCACCACAAACACAGAGGATG...TTCTTCCTCAAAGTATGAAGGTGATGAGTGATGTGGGGAAATAAGGAAACAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CCA 90 bp TGGCATGATTCTGTCCCTTTAATTTTGTCAGCTATGGCAAGTCATCATTATCTTCTCACAGTACATGGATaGTGTGTCTCCATGGCTGGG +
Preference number: 4 (lower is better)
Translates to: WHDSVPLILSAMASHHYLLTVHG*CVSMAG
Trigger: CCCAGCCATGGAGACACACCATCCATGTACTGTGAG...AAGATAATGATGACTTGCCATAGCTGACAAAATTAAAGGGACAGAATCATGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR CAA 72 bp TGTGCTCTCCATTCAATAGCTCAGAATACAAATGATTaGAGGGCAGGTCCTAGAGTTCAGCTAGGAAGTAAC +
Preference number: 4 (lower is better)
Translates to: CALHSIAQNTND*RAGPRVQLGSN
Trigger: GTTACTTCCTAGCTGAACTCTAGGACCTGCCCTCAAATCATTTGTATTCTGAGCTATTGAATGGAGAGCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR TCA 90 bp GCTTATCTTGAAATGTCATATAAACTTGTGCTGGTGAGACTTGATCACACCACTTCTTGGACTTGCATTTaGGTTGACTGCTTAGCCCTC +
Preference number: 4 (lower is better)
Translates to: AYLEMSYKLVLVRLDHTTSWTCI*VDCLAL
Trigger: GAGGGCTAAGCAGTCAACTCAAATGCAAGTCCAAGA...AGTGGTGTGATCAAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp ACTCACTTATCAGGTATCACCAAAGTGCAATTTACAGAACTTAGAAGAGGCAAACCAAGCCTTTGGTCATaGCGATTCCTGCCAGTGTTT +
Preference number: 4 (lower is better)
Translates to: THLSGITKVQFTELRRGKPSLWS*RFLPVF
Trigger: AAACACTGGCAGGAATCGTCATGACCAAAGGCTTGG...TTTGCCTCTTCTAAGTTCTGTAAATTGCACTTTGGTGATACCTGATAAGTGAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR GCA 90 bp TTGTCTTGTAGCATTAAAGAATTCTTTTACCTCTACAAACAAATGTGGATCCCCCTCCACAGGGGGATGTaGTCACGTAGAGATGGAAGA +
Preference number: 4 (lower is better)
Translates to: LSCSIKEFFYLYKQMWIPLHRGM*SRRDGR
Trigger: TCTTCCATCTCTACGTGAGCACATCCCCCTGTGGAG...GGGGATCCACATTTGTTTGTAGAGGTAAAAGAATTCTTTAATGCTACAAGACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR CCA 90 bp GCTTATCTTGAAATGTCATATAAACTTGTGCTGGTGAGACTTGATCACACCACTCATCCTCTGTGTTTGTaGTGCCAGGACTTAGGTACT +
Preference number: 4 (lower is better)
Translates to: AYLEMSYKLVLVRLDHTTHPLCL*CQDLGT
Trigger: AGTACCTAAGTCCTGGCACCACAAACACAGAGGATG...AGTGGTGTGATCAAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CCA 90 bp CACTCCTTCATGAACTATGTAAACATCCAGAGCTGGGGTAGTTTTAGAAATGTTTTCTGTGTGACCAGCTaGGACACAGAGTCTGCAAAA +
Preference number: 4 (lower is better)
Translates to: HSFMNYVNIQSWGSFRNVFCVTS*DTESAK
Trigger: TTTTGCAGACTCTGTGTCCCAGCTGGTCACACAGAA...AACATTTCTAAAACTACCCCAGCTCTGGATGTTTACATAGTTCATGAAGGAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CCA 90 bp TTGTCTTGTAGCATTAAAGAATTCTTTTACCTCTACAAACAAATGTGGATCCCCTGGCCTCACAGTACATaGATGGTGTGTCTCCATGGC +
Preference number: 4 (lower is better)
Translates to: LSCSIKEFFYLYKQMWIPWPHST*MVCLHG
Trigger: GCCATGGAGACACACCATCCATGTACTGTGAGGCCA...GGGGATCCACATTTGTTTGTAGAGGTAAAAGAATTCTTTAATGCTACAAGACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR CAA 72 bp GGTTTTGATACTGTACATTTCCCTGCAGGGGTACTATaGTTTGGTTTAAATTTCTTGCGACATGGCCATCCA +
Preference number: 4 (lower is better)
Translates to: GFDTVHFPAGVL*FGLNFLRHGHP
Trigger: TGGATGGCCATGTCGCAAGAAATTTAAACCAAACAATAGTACCCCTGCAGGGAAATGTACAGTATCAAAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp TGGCATGATTCTGTCCCTTTAATTTTGTCAGCTATGGCAAGTCATCATTATCTTTCTTGGACTTGCATTTaGGTTGACTGCTTAGCCCTC +
Preference number: 4 (lower is better)
Translates to: WHDSVPLILSAMASHHYLSWTCI*VDCLAL
Trigger: GAGGGCTAAGCAGTCAACTCAAATGCAAGTCCAAGA...AAGATAATGATGACTTGCCATAGCTGACAAAATTAAAGGGACAGAATCATGCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp TTGTCTTGTAGCATTAAAGAATTCTTTTACCTCTACAAACAAATGTGGATCCCCCCAAGCCTTTGGTCATaGCGATTCCTGCCAGTGTTT +
Preference number: 4 (lower is better)
Translates to: LSCSIKEFFYLYKQMWIPPSLWS*RFLPVF
Trigger: AAACACTGGCAGGAATCGTCATGACCAAAGGCTTGG...GGGGATCCACATTTGTTTGTAGAGGTAAAAGAATTCTTTAATGCTACAAGACAA
41% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR TCA 90 bp CACTCCTTCATGAACTATGTAAACATCCAGAGCTGGGGTAGTTTTAGAAATGTTAGACTTAGTAGAAACTaGTCTTGCTCCGGTGGTTTT +
Preference number: 4 (lower is better)
Translates to: HSFMNYVNIQSWGSFRNVRLSRN*SCSGGF
Trigger: AAAACCACCGGAGCAAGATCAGTTTCTACTAAGTCT...AACATTTCTAAAACTACCCCAGCTCTGGATGTTTACATAGTTCATGAAGGAGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CCA 90 bp AGTGGTCACAGCAGTCAAATGGTAGCACATAAAAAGAAAGACCTTTTCTGTAGTTGTGGTGATTTCATATaGAGAGTTGACTCTGGCATC +
Preference number: 4 (lower is better)
Translates to: SGHSSQMVAHKKKDLFCSCGDFI*RVDSGI
Trigger: GATGCCAGAGTCAACTCTCCATATGAAATCACCACA...ACTACAGAAAAGGTCTTTCTTTTTATGTGCTACCATTTGACTGCTGTGACCACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp GCTTATCTTGAAATGTCATATAAACTTGTGCTGGTGAGACTTGATCACACCACTCTTCCTTTAAACGTATaGATATTGATCTCTCGGGGT +
Preference number: 4 (lower is better)
Translates to: AYLEMSYKLVLVRLDHTTLPLNV*ILISRG
Trigger: ACCCCGAGAGATCAATATTCATACGTTTAAAGGAAG...AGTGGTGTGATCAAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR TCA 90 bp AGTGGTCACAGCAGTCAAATGGTAGCACATAAAAAGAAAGACCTTTTCTGTAGTCTTCCTTTAAACGTATaGATATTGATCTCTCGGGGT +
Preference number: 4 (lower is better)
Translates to: SGHSSQMVAHKKKDLFCSLPLNV*ILISRG
Trigger: ACCCCGAGAGATCAATATTCATACGTTTAAAGGAAG...ACTACAGAAAAGGTCTTTCTTTTTATGTGCTACCATTTGACTGCTGTGACCACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR TCA 90 bp TTGTCACTTCTGTGGCTATCATTATCTATAAAAGCAATGGAGAGGTTGTCATCAAGACTTAGTAGAAACTaGTCTTGCTCCGGTGGTTTT +
Preference number: 4 (lower is better)
Translates to: LSLLWLSLSIKAMERLSSRLSRN*SCSGGF
Trigger: AAAACCACCGGAGCAAGATCAGTTTCTACTAAGTCT...TGATGACAACCTCTCCATTGCTTTTATAGATAATGATAGCCACAGAAGTGACAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR CAA 72 bp ATATCTGAAAGGTACCCCACTCTGCCTCCTTCCATCTaGTTTAAGACCCTGAAGTTAATGCCAATTATTTTT +
Preference number: 4 (lower is better)
Translates to: ISERYPTLPPSI*FKTLKLMPIIF
Trigger: AAAAATAATTGGCATTAACTTCAGGGTCTTAAACAAGATGGAAGGAGGCAGAGTGGGGTACCTTTCAGATAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
3UTR CAA 72 bp GTGGAAAGGCTTGGGTTTGTTTGCAACATACTATCATaGGGCAGTTTAATAACAGTTTTCTTAGCTCATCAA +
Preference number: 4 (lower is better)
Translates to: VERLGFVCNILS*GSLITVFLAHQ
Trigger: TTGATGAGCTAAGAAAACTGTTATTAAACTGCCCAATGATAGTATGTTGCAAACAAACCCAAGCCTTTCCAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS TCA 90 bp AGGCTCCCGGAGCCAGCCTGGACCTGTCAGGCAGAGCCTGGCCCATaGGGTCCAGGGTGTGGTAGAGTAGCCGTCCTCGCCGATAGGCAG +
Preference number: 5 (lower is better)
Translates to: RLPEPAWTCQAEPGP*GPGCGRVAVLADRQ
Trigger: CTGCCTATCGGCGAGGACGGCTACTCTACCACACCCTGGACCTCATGGGCCAGGCTCTGCCTGACAGGTCCAGGCTGGCTCCGGGAGCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CCA 90 bp GGCGCTGCCCACGACCCAGTTGGCACTGAAGTGGGGAGACTTTCCTaGCTGCCGGGCCTCTGCGTGACTCACGCCACTAAGGAGAGGCCT +
Preference number: 5 (lower is better)
Translates to: GAAHDPVGTEVGRLS*LPGLCVTHATKERP
Trigger: AGGCCTCTCCTTAGTGGCGTGAGTCACGCAGAGGCCCGGCAGCCAGGAAAGTCTCCCCACTTCAGTGCCAACTGGGTCGTGGGCAGCGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 90 bp GGGCCTGCAAGGCAGCTTGTGCTGCTTGGCCCTTGGCCAGCTTCTTaGTGCGTCCAGAGCCTTCGAACGTCCTCCCATCCACGCACACAG +
Preference number: 5 (lower is better)
Translates to: GPARQLVLLGPWPAS*CVQSLRTSSHPRTQ
Trigger: CTGTGTGCGTGGATGGGAGGACGTTCGAAGGCTCTGGACGCAGCAAGAAGCTGGCCAAGGGCCAAGCAGCACAAGCTGCCTTGCAGGCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 90 bp GGCAGGCAGCTGGCCGATTCCCTCCATCCTGTGGCTCATGACCCGTaGAAGATGGCCCGTGTGGTGCAGGCTGCCCACAATGATGCTGTG +
Preference number: 5 (lower is better)
Translates to: GRQLADSLHPVAHDP*KMARVVQAAHNDAV
Trigger: CACAGCATCATTGTGGGCAGCCTGCACCACACGGGCCATCTTGCACGGGTCATGAGCCACAGGATGGAGGGAATCGGCCAGCTGCCTGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CCA 90 bp TTTTGTCGGTATGAGGCAGGCAGCTGGCCGATTCCCTCCATCCTGTaGCTCATGACCCGTGCAAGATGGCCCGTGTGGTGCAGGCTGCCC +
Preference number: 5 (lower is better)
Translates to: FCRYEAGSWPIPSIL*LMTRARWPVWCRLP
Trigger: GGGCAGCCTGCACCACACGGGCCATCTTGCACGGGTCATGAGCCACAGGATGGAGGGAATCGGCCAGCTGCCTGCCTCATACCGACAAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 90 bp CCCTCCATCCTGTGGCTCATGACCCGTGCAAGATGGCCCGTGTGGTaGAGGCTGCCCACAATGATGCTGTGGAGGTACACAGGCTCGATG +
Preference number: 5 (lower is better)
Translates to: PSILWLMTRARWPVW*RLPTMMLWRYTGSM
Trigger: CATCGAGCCTGTGTACCTCCACAGCATCATTGTGGGCAGCCTGCACCACACGGGCCATCTTGCACGGGTCATGAGCCACAGGATGGAGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CCA 90 bp AGCTGGCCGATTCCCTCCATCCTGTGGCTCATGACCCGTGCAAGATaGCCCGTGTGGTGCAGGCTGCCCACAATGATGCTGTGGAGGTAC +
Preference number: 5 (lower is better)
Translates to: SWPIPSILWLMTRAR*PVWCRLPTMMLWRY
Trigger: GTACCTCCACAGCATCATTGTGGGCAGCCTGCACCACACGGGCCATCTTGCACGGGTCATGAGCCACAGGATGGAGGGAATCGGCCAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CCA 90 bp CCCCCTGCTTGGCCTCACAGTACATGGATGGTGTGTCTCCATGGCTaGGGATCCGTGTGCTTAGCCTACCATGCAGCCGTGCCCACCAAG +
Preference number: 5 (lower is better)
Translates to: PPAWPHSTWMVCLHG*GSVCLAYHAAVPTK
Trigger: CTTGGTGGGCACGGCTGCATGGTAGGCTAAGCACACGGATCCCCAGCCATGGAGACACACCATCCATGTACTGTGAGGCCAAGCAGGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000135574.8
CDS TCA 90 bp TTCTACAGCCACTGCGAAAACTGGGGCGTGCACCGGGCCCGTCTGTaGCACCATTCGGTACTGCAGACCAGGCTTCAGCTCATGCAGCTG +
Preference number: 5 (lower is better)
Translates to: FYSHCENWGVHRARL*HHSVLQTRLQLMQL
Trigger: CAGCTGCATGAGCTGAAGCCTGGTCTGCAGTACCGAATGGTGTCACAGACGGGCCCGGTGCACGCCCCAGTTTTCGCAGTGGCTGTAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 90 bp AAAACTGGGGCGTGCACCGGGCCCGTCTGTGACACCATTCGGTACTaGAGACCAGGCTTCAGCTCATGCAGCTGGACCAGCGCATTCTTG +
Preference number: 5 (lower is better)
Translates to: KTGACTGPVCDTIRY*RPGFSSCSWTSAFL
Trigger: CAAGAATGCGCTGGTCCAGCTGCATGAGCTGAAGCCTGGTCTGCAGTACCGAATGGTGTCACAGACGGGCCCGGTGCACGCCCCAGTTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 90 bp AATGTGAGGCCGTTCACTTCTACAGCCACTGCGAAAACTGGGGCGTaGACCGGGCCCGTCTGTGACACCATTCGGTACTGCAGACCAGGC +
Preference number: 5 (lower is better)
Translates to: NVRPFTSTATAKTGA*TGPVCDTIRYCRPG
Trigger: GCCTGGTCTGCAGTACCGAATGGTGTCACAGACGGGCCCGGTGCACGCCCCAGTTTTCGCAGTGGCTGTAGAAGTGAACGGCCTCACATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 90 bp TTAGCCTACCATGCAGCCGTGCCCACCAAGCAGAAAACACGTGTTTaGAGAGCCGGGATGAGCCCCCACAGCTCCTCTTCCCAGTGGTGG +
Preference number: 5 (lower is better)
Translates to: LAYHAAVPTKQKTRV*RAGMSPHSSSSQWW
Trigger: CCACCACTGGGAAGAGGAGCTGTGGGGGCTCATCCCGGCTCTGCAAACACGTGTTTTCTGCTTGGTGGGCACGGCTGCATGGTAGGCTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000135574.8
CDS CCA 90 bp ATTCCCTCCATCCTGTGGCTCATGACCCGTGCAAGATGGCCCGTGTaGTGCAGGCTGCCCACAATGATGCTGTGGAGGTACACAGGCTCG +
Preference number: 5 (lower is better)
Translates to: IPSILWLMTRARWPV*CRLPTMMLWRYTGS
Trigger: CGAGCCTGTGTACCTCCACAGCATCATTGTGGGCAGCCTGCACCACACGGGCCATCTTGCACGGGTCATGAGCCACAGGATGGAGGGAAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp CAGGGAACGTCCTCCACGAGCAGCAGTCTCCCTGGCACTTCACTTCTCTCGGATTGTGCTGCTTGGCCCTaGGCCAGCTTCTTGCTGCGT +
Preference number: 5 (lower is better)
Translates to: QGTSSTSSSLPGTSLLSDCAAWP*ASFLLR
Trigger: ACGCAGCAAGAAGCTGGCCAAGGGCCAAGCAGCACA...ATCCGAGAGAAGTGAAGTGCCAGGGAGACTGCTGCTCGTGGAGGACGTTCCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS TCA 90 bp CTCTGCGTGACTCACGCCACTAAGGAGAGGCCTGTTTTGTCGGTATaGGGCAGGCAGCTGGCCGATTCCCTCCATCCTGTGGCTCATGAC +
Preference number: 5 (lower is better)
Translates to: LCVTHATKERPVLSV*GRQLADSLHPVAHD
Trigger: GTCATGAGCCACAGGATGGAGGGAATCGGCCAGCTGCCTGCCTCATACCGACAAAACAGGCCTCTCCTTAGTGGCGTGAGTCACGCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS TCA 90 bp TTGGCACTGAAGTGGGGAGACTTTCCTGGCTGCCGGGCCTCTGCGTaGCTCACGCCACTAAGGAGAGGCCTGTTTTGTCGGTATGAGGCA +
Preference number: 5 (lower is better)
Translates to: LALKWGDFPGCRASA*LTPLRRGLFCRYEA
Trigger: TGCCTCATACCGACAAAACAGGCCTCTCCTTAGTGGCGTGAGTCACGCAGAGGCCCGGCAGCCAGGAAAGTCTCCCCACTTCAGTGCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 90 bp CCCGTCTGTGACACCATTCGGTACTGCAGACCAGGCTTCAGCTCATaGAGCTGGACCAGCGCATTCTTGGGTGTCACAGACCAGGAGAGC +
Preference number: 5 (lower is better)
Translates to: PVCDTIRYCRPGFSS*SWTSAFLGVTDQES
Trigger: GCTCTCCTGGTCTGTGACACCCAAGAATGCGCTGGTCCAGCTGCATGAGCTGAAGCCTGGTCTGCAGTACCGAATGGTGTCACAGACGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 90 bp GATGGTGTGTCTCCATGGCTGGGGATCCGTGTGCTTAGCCTACCATaGAGCCGTGCCCACCAAGCAGAAAACACGTGTTTGCAGAGCCGG +
Preference number: 5 (lower is better)
Translates to: DGVSPWLGIRVLSLP*SRAHQAENTCLQSR
Trigger: CCGGCTCTGCAAACACGTGTTTTCTGCTTGGTGGGCACGGCTGCATGGTAGGCTAAGCACACGGATCCCCAGCCATGGAGACACACCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000135574.8
CDS CCA 90 bp ACGCCACTAAGGAGAGGCCTGTTTTGTCGGTATGAGGCAGGCAGCTaGCCGATTCCCTCCATCCTGTGGCTCATGACCCGTGCAAGATGG +
Preference number: 5 (lower is better)
Translates to: TPLRRGLFCRYEAGS*PIPSILWLMTRARW
Trigger: CCATCTTGCACGGGTCATGAGCCACAGGATGGAGGGAATCGGCCAGCTGCCTGCCTCATACCGACAAAACAGGCCTCTCCTTAGTGGCGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp TGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGGATGGCTGTAAGCCCTTGGCCAGCTTCTaGCTGCGTCCAGAGCCTTCG +
Preference number: 5 (lower is better)
Translates to: CTAWMCGAAGAGVMDGCKPLASF*LRPEPS
Trigger: CGAAGGCTCTGGACGCAGCAAGAAGCTGGCCAAGGG...CTTACAGCCATCCATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS TCA 90 bp CAGCCGTGCCCACCAAGCAGAAAACACGTGTTTGCAGAGCCGGGATaGGCCCCCACAGCTCCTCTTCCCAGTGGTGGCATTAATGATCTC +
Preference number: 5 (lower is better)
Translates to: QPCPPSRKHVFAEPG*APTAPLPSGGINDL
Trigger: GAGATCATTAATGCCACCACTGGGAAGAGGAGCTGTGGGGGCTCATCCCGGCTCTGCAAACACGTGTTTTCTGCTTGGTGGGCACGGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 90 bp ACATGGATGGTGTGTCTCCATGGCTGGGGATCCGTGTGCTTAGCATaGAGCCGTGCCCACCAAGCAGAAAACACGTGTTTGCAGAGCCGG +
Preference number: 5 (lower is better)
Translates to: TWMVCLHGWGSVCLA*SRAHQAENTCLQSR
Trigger: CCGGCTCTGCAAACACGTGTTTTCTGCTTGGTGGGCACGGCTGCATGCTAAGCACACGGATCCCCAGCCATGGAGACACACCATCCATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp GGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATGGGGTTCTTGGAGGCCTGCAAGGCAGCTaGTGCTGCTTGGCCCTTGGC +
Preference number: 5 (lower is better)
Translates to: GADTTKLLSLAMVDGVLGGLQGS*CCLALG
Trigger: GCCAAGGGCCAAGCAGCACAAGCTGCCTTGCAGGCC...TCCAAGAACCCCATCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS TCA 90 bp CTCTTGGACCTCCTCCTCCTCCTCCTCTTGGACTTGCATTTGAGTTaGCTGCTTAGCCCTCCAGACCCTCTGCCACTCCCCAGGACAGAT +
Preference number: 5 (lower is better)
Translates to: LLDLLLLLLLDLHLS*LLSPPDPLPLPRTD
Trigger: ATCTGTCCTGGGGAGTGGCAGAGGGTCTGGAGGGCTAAGCAGTCAACTCAAATGCAAGTCCAAGAGGAGGAGGAGGAGGAGGTCCAAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS TCA 90 bp AGGCTGCCCACAATGATGCTGTGGAGGTACACAGGCTCGATGAAGTaGCAGAGGAGAGCGCCTTGTAGTCCCAGCACATTCCAGCTGGCA +
Preference number: 5 (lower is better)
Translates to: RLPTMMLWRYTGSMK*QRRAPCSPSTFQLA
Trigger: TGCCAGCTGGAATGTGCTGGGACTACAAGGCGCTCTCCTCTGTCACTTCATCGAGCCTGTGTACCTCCACAGCATCATTGTGGGCAGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 90 bp CCTCACAGTACATGGATGGTGTGTCTCCATGGCTGGGGATCCGTGTaGTTAGCCTACCATGCAGCCGTGCCCACCAAGCAGAAAACACGT +
Preference number: 5 (lower is better)
Translates to: PHSTWMVCLHGWGSV*LAYHAAVPTKQKTR
Trigger: ACGTGTTTTCTGCTTGGTGGGCACGGCTGCATGGTAGGCTAAGCACACGGATCCCCAGCCATGGAGACACACCATCCATGTACTGTGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp TGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGGATGGCTGTAAGGGCCTGGTCCCCAGGTaGCTCACATTTCGGTTTTCC +
Preference number: 5 (lower is better)
Translates to: CTAWMCGAAGAGVMDGCKGLVPR*LTFRFS
Trigger: GGAAAACCGAAATGTGAGCAACCTGGGGACCAGGCC...CTTACAGCCATCCATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp CATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTGGAGTTATGCCCTTGGCCAGCTTCTaGCTGCGTCCAGAGCCTTCG +
Preference number: 5 (lower is better)
Translates to: HLCRCTAWMCGAAGAGVMPLASF*LRPEPS
Trigger: CGAAGGCTCTGGACGCAGCAAGAAGCTGGCCAAGGG...CATAACTCCAGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp TGCTGGAACCTGAGGAGCCACACACGTGCACCTTTCTACTGGACCAGAGATTATCCCTTGGCCAGCTTCTaGCTGCGTCCAGAGCCTTCG +
Preference number: 5 (lower is better)
Translates to: CWNLRSHTRAPFYWTRDYPLASF*LRPEPS
Trigger: CGAAGGCTCTGGACGCAGCAAGAAGCTGGCCAAGGG...ATAATCTCTGGTCCAGTAGAAAGGTGCACGTGTGTGGCTCCTCAGGTTCCAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS GCA 90 bp GAAGGCATTGGGGAACTGCACAAAGGACTTCAGGGCCATTTCTGCTaGCCGCATCTTGGCCTTCTTCTTAGTGGGCCCCGTGCCTTCAAA +
Preference number: 5 (lower is better)
Translates to: EGIGELHKGLQGHFC*PHLGLLLSGPRAFK
Trigger: TTTGAAGGCACGGGGCCCACTAAGAAGAAGGCCAAGATGCGGGCAGCAGAAATGGCCCTGAAGTCCTTTGTGCAGTTCCCCAATGCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 90 bp CGCACAGGGACTGTTCCTTCCCCAGACTCAATCTTGGTGCGCAGGTaGCCTCGGAACTTCCTGACGATGTGTTTGCTGCTGTTCAAGTCT +
Preference number: 5 (lower is better)
Translates to: RTGTVPSPDSILVRR*PRNFLTMCLLLFKS
Trigger: AGACTTGAACAGCAGCAAACACATCGTCAGGAAGTTCCGAGGGCACCTGCGCACCAAGATTGAGTCTGGGGAAGGAACAGTCCCTGTGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CCA 90 bp ACTGCAGACCAGGCTTCAGCTCATGCAGCTGGACCAGCGCATTCTTaGGTGTCACAGACCAGGAGAGCTTCTTCCAGATCAGCTGGAGTT +
Preference number: 5 (lower is better)
Translates to: TADQASAHAAGPAHS*VSQTRRASSRSAGV
Trigger: AACTCCAGCTGATCTGGAAGAAGCTCTCCTGGTCTGTGACACCCAAGAATGCGCTGGTCCAGCTGCATGAGCTGAAGCCTGGTCTGCAGT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CCA 90 bp TGTGACACCATTCGGTACTGCAGACCAGGCTTCAGCTCATGCAGCTaGACCAGCGCATTCTTGGGTGTCACAGACCAGGAGAGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: CDTIRYCRPGFSSCS*TSAFLGVTDQESFF
Trigger: GAAGAAGCTCTCCTGGTCTGTGACACCCAAGAATGCGCTGGTCCAGCTGCATGAGCTGAAGCCTGGTCTGCAGTACCGAATGGTGTCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp TACCCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGTCCCCAGACTCAATCTaGGTGCGCAGGTGCCCTCGG +
Preference number: 5 (lower is better)
Translates to: YPVRDGADTTKLLSLAMVSPDSI*VRRCPR
Trigger: CCGAGGGCACCTGCGCACCAAGATTGAGTCTGGGGA...CACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS GCA 90 bp TGCTCACCGCTGATACACTTGGTCCCAGAGGACAGAACGATGACCTaGGCTTGTTTGGTGTCCAAGCCTTTGGTCATGACGATTCCTGCC +
Preference number: 5 (lower is better)
Translates to: CSPLIHLVPEDRTMT*ACLVSKPLVMTIPA
Trigger: GGCAGGAATCGTCATGACCAAAGGCTTGGACACCAAACAAGCGCAGGTCATCGTTCTGTCCTCTGGGACCAAGTGTATCAGCGGTGAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 90 bp CTTGCTCAAGTGCAGCTCCAGCTGAGAGTAGAGGAAGTGAAGAAATaGCCGCCTCGCCACGATCTCAGCATGACAGTCGTTGACAACCAG +
Preference number: 5 (lower is better)
Translates to: LAQVQLQLRVEEVKK*PPRHDLSMTVVDNQ
Trigger: CTGGTTGTCAACGACTGTCATGCTGAGATCGTGGCGAGGCGGGCATTTCTTCACTTCCTCTACTCTCAGCTGGAGCTGCACTTGAGCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp CAGCCCGACCCAAACTCAAACCTAGTCTCTCATCCACACATGGAGCCACATGTTTGGGCCTGGAAGGCATaGGGGAACTGCACAAAGGAC +
Preference number: 5 (lower is better)
Translates to: QPDPNSNLVSHPHMEPHVWAWKA*GNCTKD
Trigger: GTCCTTTGTGCAGTTCCCCAATGCCTTCCAGGCCCA...AACATGTGGCTCCATGTGTGGATGAGAGACTAGGTTTGAGTTTGGGTCGGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp TGGAGCCACATGTTCCTGAACAGTGAAGGAGAACAAAGGTCAAGAACTGATGGAGGCCTGCAAGGCAGCTaGTGCTGCTTGGCCCTTGGC +
Preference number: 5 (lower is better)
Translates to: WSHMFLNSEGEQRSRTDGGLQGS*CCLALG
Trigger: GCCAAGGGCCAAGCAGCACAAGCTGCCTTGCAGGCC...TCCATCAGTTCTTGACCTTTGTTCTCCTTCACTGTTCAGGAACATGTGGCTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp AGAATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCTCCCCAGACTCAATCTaGGTGCGCAGGTGCCCTCGG +
Preference number: 5 (lower is better)
Translates to: RIVGEMTWGWEELYGTMLSPDSI*VRRCPR
Trigger: CCGAGGGCACCTGCGCACCAAGATTGAGTCTGGGGA...GAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp CAGCCCGACCCAAACTCAAACCTAGTCTCTCATCCACACATGGAGCCACATGTTGCAGAAAACACGTGTTaGCAGAGCCGGGATGAGCCC +
Preference number: 5 (lower is better)
Translates to: QPDPNSNLVSHPHMEPHVAENTC*QSRDEP
Trigger: GGGCTCATCCCGGCTCTGCAAACACGTGTTTTCTGC...AACATGTGGCTCCATGTGTGGATGAGAGACTAGGTTTGAGTTTGGGTCGGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS CCA 90 bp TTGGTGTCCAAGCCTTTGGTCATGACGATTCCTGCCAGTGTTTTGTaGCGGGCATACACAGATGTCAGGCCGACTGTCAGTTCACGGAAC +
Preference number: 5 (lower is better)
Translates to: LVSKPLVMTIPASVL*RAYTDVRPTVSSRN
Trigger: GTTCCGTGAACTGACAGTCGGCCTGACATCTGTGTATGCCCGCCACAAAACACTGGCAGGAATCGTCATGACCAAAGGCTTGGACACCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp GTGGACAAAGCCCAGGGGTCACTCTGCTCCAAGCTCTCCATAGAATACCACAGTACTTTGTCTTTCCTCTaGGACCTCCTCCTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: VDKAQGSLCSKLSIEYHSTLSFL*DLLLLL
Trigger: GAGGAGGAGGAGGAGGTCCAAGAGGAAAGACAAAGT...ACTGTGGTATTCTATGGAGAGCTTGGAGCAGAGTGACCCCTGGGCTTTGTCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp GGGGATCGGAACAAAGTGGGCAGATGTTTAGCAGGAGGGAAGCACAGCAAGGTGCTTCATCCTCTGTGTTaGTGGTGCCAGGACTTAGGT +
Preference number: 5 (lower is better)
Translates to: GDRNKVGRCLAGGKHSKVLHPLC*WCQDLG
Trigger: ACCTAAGTCCTGGCACCACAAACACAGAGGATGAAG...CACCTTGCTGTGCTTCCCTCCTGCTAAACATCTGCCCACTTTGTTCCGATCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS TCA 90 bp CATACACAGATGTCAGGCCGACTGTCAGTTCACGGAACTTCTGTGTaGCCAGCTGGGACACAGAGTCTGCAAAATCCTGTGGCAAGAGGT +
Preference number: 5 (lower is better)
Translates to: HTQMSGRLSVHGTSV*PAGTQSLQNPVARG
Trigger: ACCTCTTGCCACAGGATTTTGCAGACTCTGTGTCCCAGCTGGTCACACAGAAGTTCCGTGAACTGACAGTCGGCCTGACATCTGTGTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CCA 90 bp GAACTTCTGTGTGACCAGCTGGGACACAGAGTCTGCAAAATCCTGTaGCAAGAGGTTGCTTTTACTCCTGCTGGGTATGTGACCAGGCAG +
Preference number: 5 (lower is better)
Translates to: ELLCDQLGHRVCKIL*QEVAFTPAGYVTRQ
Trigger: CTGCCTGGTCACATACCCAGCAGGAGTAAAAGCAACCTCTTGCCACAGGATTTTGCAGACTCTGTGTCCCAGCTGGTCACACAGAAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp ATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTACTTTGTCTTTCCTCTaGGACCTCCTCCTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: ICPHLCRCTAWMCGAAGATLSFL*DLLLLL
Trigger: GAGGAGGAGGAGGAGGTCCAAGAGGAAAGACAAAGT...AGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp ACAGCCCAGGGAGAAGCAGCCCGACCCAAACTCAAACCTAGTCTCTCATCCACAGACAGTATGCTGACTTaGTCTTTCCTCTTGGACCTC +
Preference number: 5 (lower is better)
Translates to: TAQGEAARPKLKPSLSSTDSMLT*SFLLDL
Trigger: GAGGTCCAAGAGGAAAGACAAAGTCAGCATACTGTC...TGTGGATGAGAGACTAGGTTTGAGTTTGGGTCGGGCTGCTTCTCCCTGGGCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp TCTCACCCAGGTGCCAAGACCGGCTTTCTGAAAGGCCTTGAAGAGCTGCTGTTTCTTCATCCTCTGTGTTaGTGGTGCCAGGACTTAGGT +
Preference number: 5 (lower is better)
Translates to: SHPGAKTGFLKGLEELLFLHPLC*WCQDLG
Trigger: ACCTAAGTCCTGGCACCACAAACACAGAGGATGAAG...AAACAGCAGCTCTTCAAGGCCTTTCAGAAAGCCGGTCTTGGCACCTGGGTGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp AGAATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCTGGGCCTGGAAGGCATaGGGGAACTGCACAAAGGAC +
Preference number: 5 (lower is better)
Translates to: RIVGEMTWGWEELYGTMLWAWKA*GNCTKD
Trigger: GTCCTTTGTGCAGTTCCCCAATGCCTTCCAGGCCCA...GAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp TTCCTGAACAGTGAAGGAGAACAAAGGTCAAGAACTGATGGACACACCACACCATGTGCTGCTTGGCCCTaGGCCAGCTTCTTGCTGCGT +
Preference number: 5 (lower is better)
Translates to: FLNSEGEQRSRTDGHTTPCAAWP*ASFLLR
Trigger: ACGCAGCAAGAAGCTGGCCAAGGGCCAAGCAGCACA...TGGTGTGGTGTGTCCATCAGTTCTTGACCTTTGTTCTCCTTCACTGTTCAGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp ATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTGCTGGGGCTTTCCAGCTGGCAATCTaGTCTGTGCAGGACATGGTG +
Preference number: 5 (lower is better)
Translates to: ICPHLCRCTAWMCGAAGAFQLAI*SVQDMV
Trigger: CACCATGTCCTGCACAGACAAGATTGCCAGCTGGAA...AGCCCCAGCAGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS CCA 90 bp GATGTCAGGCCGACTGTCAGTTCACGGAACTTCTGTGTGACCAGCTaGGACACAGAGTCTGCAAAATCCTGTGGCAAGAGGTTGCTTTTA +
Preference number: 5 (lower is better)
Translates to: DVRPTVSSRNFCVTS*DTESAKSCGKRLLL
Trigger: TAAAAGCAACCTCTTGCCACAGGATTTTGCAGACTCTGTGTCCCAGCTGGTCACACAGAAGTTCCGTGAACTGACAGTCGGCCTGACATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp TACCCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGACTTTGTCTTTCCTCTaGGACCTCCTCCTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: YPVRDGADTTKLLSLAMVTLSFL*DLLLLL
Trigger: GAGGAGGAGGAGGAGGTCCAAGAGGAAAGACAAAGT...CACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp CCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATTTGGTGTCCAAGCCTTaGGTCATGACGATTCCTGCC +
Preference number: 5 (lower is better)
Translates to: PVRDGADTTKLLSLAMVDLVSKP*VMTIPA
Trigger: GGCAGGAATCGTCATGACCAAAGGCTTGGACACCAA...ATCCACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp AGTGGTCACAGCAGTCAAATGGTAGCACATAAAAAGAAAGACCTTTTCTGTAGTGGCCTGCAAGGCAGCTaGTGCTGCTTGGCCCTTGGC +
Preference number: 5 (lower is better)
Translates to: SGHSSQMVAHKKKDLFCSGLQGS*CCLALG
Trigger: GCCAAGGGCCAAGCAGCACAAGCTGCCTTGCAGGCC...ACTACAGAAAAGGTCTTTCTTTTTATGTGCTACCATTTGACTGCTGTGACCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS CCA 90 bp TCCCCAGGTTGCTCACATTTCGGTTTTCCTTCACTTCAGCACTGCTaGTACTTAGGTTATCTTCATCCTCTGTGTTTGTGGTGCCAGGAC +
Preference number: 5 (lower is better)
Translates to: SPGCSHFGFPSLQHC*YLGYLHPLCLWCQD
Trigger: GTCCTGGCACCACAAACACAGAGGATGAAGATAACCTAAGTACCAGCAGTGCTGAAGTGAAGGAAAACCGAAATGTGAGCAACCTGGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp TACCCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGACAGTATGCTGACTTaGTCTTTCCTCTTGGACCTC +
Preference number: 5 (lower is better)
Translates to: YPVRDGADTTKLLSLAMVDSMLT*SFLLDL
Trigger: GAGGTCCAAGAGGAAAGACAAAGTCAGCATACTGTC...CACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp AAGCTGGGAACTCAACCAGAGTCCTCTATAGAAGCAGCAAAGCTCCTAACTGCTCTTCATCCTCTGTGTTaGTGGTGCCAGGACTTAGGT +
Preference number: 5 (lower is better)
Translates to: KLGTQPESSIEAAKLLTALHPLC*WCQDLG
Trigger: ACCTAAGTCCTGGCACCACAAACACAGAGGATGAAG...AGCAGTTAGGAGCTTTGCTGCTTCTATAGAGGACTCTGGTTGAGTTCCCAGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp TACCCAGTAAGGGATGGGGCTGACACAACAAAGCTTCTCTCTCTAGCTATGGTGGATGGTTCAAACTCCTaGAACAACGTGTCTGGGAAG +
Preference number: 5 (lower is better)
Translates to: YPVRDGADTTKLLSLAMVDGSNS*NNVSGK
Trigger: CTTCCCAGACACGTTGTTCAAGGAGTTTGAACCATC...CACCATAGCTAGAGAGAGAAGCTTTGTTGTGTCAGCCCCATCCCTTACTGGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp AATTGTGGGGGAAATGACTTGGGGATGGGAGGAACTGTATGGAACAATGCTCCGGATGGTTCAAACTCCTaGAACAACGTGTCTGGGAAG +
Preference number: 5 (lower is better)
Translates to: NCGGNDLGMGGTVWNNAPDGSNS*NNVSGK
Trigger: CTTCCCAGACACGTTGTTCAAGGAGTTTGAACCATC...CGGAGCATTGTTCCATACAGTTCCTCCCATCCCCAAGTCATTTCCCCCACAATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp GGAAATACGATGGAATTTTCTCCAGGTTTTGATACTGTACATTTCCCTGCAGGGGCAGAAAACACGTGTTaGCAGAGCCGGGATGAGCCC +
Preference number: 5 (lower is better)
Translates to: GNTMEFSPGFDTVHFPAGAENTC*QSRDEP
Trigger: GGGCTCATCCCGGCTCTGCAAACACGTGTTTTCTGC...CCCTGCAGGGAAATGTACAGTATCAAAACCTGGAGAAAATTCCATCGTATTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp TGGGTAGTGGTTAATCACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATGGCCTGGTCCCCAGGTaGCTCACATTTCGGTTTTCC +
Preference number: 5 (lower is better)
Translates to: WVVVNHPTVVTSVAIIIYGLVPR*LTFRFS
Trigger: GGAAAACCGAAATGTGAGCAACCTGGGGACCAGGCC...ATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGTGATTAACCACTACCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp GCTTATCTTGAAATGTCATATAAACTTGTGCTGGTGAGACTTGATCACACCACTTGTGCTGCTTGGCCCTaGGCCAGCTTCTTGCTGCGT +
Preference number: 5 (lower is better)
Translates to: AYLEMSYKLVLVRLDHTTCAAWP*ASFLLR
Trigger: ACGCAGCAAGAAGCTGGCCAAGGGCCAAGCAGCACA...AGTGGTGTGATCAAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp CCCCACATCACTCATCACCTTCATACTTTGAGGAAGAAGTTTAACAAGAGCCACTTCCAGCTGGCAATCTaGTCTGTGCAGGACATGGTG +
Preference number: 5 (lower is better)
Translates to: PHITHHLHTLRKKFNKSHFQLAI*SVQDMV
Trigger: CACCATGTCCTGCACAGACAAGATTGCCAGCTGGAA...GTGGCTCTTGTTAAACTTCTTCCTCAAAGTATGAAGGTGATGAGTGATGTGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp TGTTCACCTGTGGCTTATCTTGAAATGTCATATAAACTTGTGCTGGTGAGACTTTGGGCCTGGAAGGCATaGGGGAACTGCACAAAGGAC +
Preference number: 5 (lower is better)
Translates to: CSPVAYLEMSYKLVLVRLWAWKA*GNCTKD
Trigger: GTCCTTTGTGCAGTTCCCCAATGCCTTCCAGGCCCA...AAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGCCACAGGTGAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp AATACCACAGTCTGCGCCCATGTTTCCTCTAACAACATTATATCATTCCTCCACTTGGTGTCCAAGCCTTaGGTCATGACGATTCCTGCC +
Preference number: 5 (lower is better)
Translates to: NTTVCAHVSSNNIISFLHLVSKP*VMTIPA
Trigger: GGCAGGAATCGTCATGACCAAAGGCTTGGACACCAA...GTGGAGGAATGATATAATGTTGTTAGAGGAAACATGGGCGCAGACTGTGGTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp TTGTCTTGTAGCATTAAAGAATTCTTTTACCTCTACAAACAAATGTGGATCCCCTCCCCAGACTCAATCTaGGTGCGCAGGTGCCCTCGG +
Preference number: 5 (lower is better)
Translates to: LSCSIKEFFYLYKQMWIPSPDSI*VRRCPR
Trigger: CCGAGGGCACCTGCGCACCAAGATTGAGTCTGGGGA...GGGGATCCACATTTGTTTGTAGAGGTAAAAGAATTCTTTAATGCTACAAGACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000064473.13
CDS-3UTR CAA 90 bp TCTATGATAATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTTTCCAGCTGGCAATCTaGTCTGTGCAGGACATGGTG +
Preference number: 5 (lower is better)
Translates to: SMIICPHLCRCTAWMCGAFQLAI*SVQDMV
Trigger: CACCATGTCCTGCACAGACAAGATTGCCAGCTGGAA...AGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAATTATCATAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp ACTCACTTATCAGGTATCACCAAAGTGCAATTTACAGAACTTAGAAGAGGCAAAGGCCTGGTCCCCAGGTaGCTCACATTTCGGTTTTCC +
Preference number: 5 (lower is better)
Translates to: THLSGITKVQFTELRRGKGLVPR*LTFRFS
Trigger: GGAAAACCGAAATGTGAGCAACCTGGGGACCAGGCC...TTTGCCTCTTCTAAGTTCTGTAAATTGCACTTTGGTGATACCTGATAAGTGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp CCCCACATCACTCATCACCTTCATACTTTGAGGAAGAAGTTTAACAAGAGCCACCAGATCAGCTGGAGTTaGCAGAAATGTCCCCCATTT +
Preference number: 5 (lower is better)
Translates to: PHITHHLHTLRKKFNKSHQISWS*QKCPPF
Trigger: AAATGGGGGACATTTCTGCAAACTCCAGCTGATCTG...GTGGCTCTTGTTAAACTTCTTCCTCAAAGTATGAAGGTGATGAGTGATGTGGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp CCATGGCTTCTCTCTGGTGGCTTCCACCTATGTCATTTTGCGTCTGTTTCCTTAGGAAGTCTTCGTTTTTaGAGGATGGTTCAAACTCCT +
Preference number: 5 (lower is better)
Translates to: PWLLSGGFHLCHFASVSLGSLRF*RMVQTP
Trigger: AGGAGTTTGAACCATCCTCAAAAAACGAAGACTTCC...TAAGGAAACAGACGCAAAATGACATAGGTGGAAGCCACCAGAGAGAAGCCATGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp TGGCATGATTCTGTCCCTTTAATTTTGTCAGCTATGGCAAGTCATCATTATCTTGCAGAAAACACGTGTTaGCAGAGCCGGGATGAGCCC +
Preference number: 5 (lower is better)
Translates to: WHDSVPLILSAMASHHYLAENTC*QSRDEP
Trigger: GGGCTCATCCCGGCTCTGCAAACACGTGTTTTCTGC...AAGATAATGATGACTTGCCATAGCTGACAAAATTAAAGGGACAGAATCATGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp GCTTATCTTGAAATGTCATATAAACTTGTGCTGGTGAGACTTGATCACACCACTTTGGTGTCCAAGCCTTaGGTCATGACGATTCCTGCC +
Preference number: 5 (lower is better)
Translates to: AYLEMSYKLVLVRLDHTTLVSKP*VMTIPA
Trigger: GGCAGGAATCGTCATGACCAAAGGCTTGGACACCAA...AGTGGTGTGATCAAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp TGGGTAGTGGTTAATCACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATCAGATCAGCTGGAGTTaGCAGAAATGTCCCCCATTT +
Preference number: 5 (lower is better)
Translates to: WVVVNHPTVVTSVAIIIYQISWS*QKCPPF
Trigger: AAATGGGGGACATTTCTGCAAACTCCAGCTGATCTG...ATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGTGATTAACCACTACCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp TATAAAAGCAATGGAGAGGTTGTCATCAAGTGGAAAGGCTTGGGTTTGTTTGCACAGATCAGCTGGAGTTaGCAGAAATGTCCCCCATTT +
Preference number: 5 (lower is better)
Translates to: YKSNGEVVIKWKGLGLFAQISWS*QKCPPF
Trigger: AAATGGGGGACATTTCTGCAAACTCCAGCTGATCTG...TGCAAACAAACCCAAGCCTTTCCACTTGATGACAACCTCTCCATTGCTTTTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp TGGGTAGTGGTTAATCACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATGATGGTTCAAACTCCTaGAACAACGTGTCTGGGAAG +
Preference number: 5 (lower is better)
Translates to: WVVVNHPTVVTSVAIIIYDGSNS*NNVSGK
Trigger: CTTCCCAGACACGTTGTTCAAGGAGTTTGAACCATC...ATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGTGATTAACCACTACCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp TCTATGATAATTTGCCCACATTTATGTAGGTGCACTGCATGGATGTGTGGAGCTATTTCATATGGAGAGTaGACTCTGGCATCTCCACAG +
Preference number: 5 (lower is better)
Translates to: SMIICPHLCRCTAWMCGAISYGE*TLASPQ
Trigger: CTGTGGAGATGCCAGAGTCAACTCTCCATATGAAAT...AGCTCCACACATCCATGCAGTGCACCTACATAAATGTGGGCAAATTATCATAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp AATACCACAGTCTGCGCCCATGTTTCCTCTAACAACATTATATCATTCCTCCACATTTCATATGGAGAGTaGACTCTGGCATCTCCACAG +
Preference number: 5 (lower is better)
Translates to: NTTVCAHVSSNNIISFLHISYGE*TLASPQ
Trigger: CTGTGGAGATGCCAGAGTCAACTCTCCATATGAAAT...GTGGAGGAATGATATAATGTTGTTAGAGGAAACATGGGCGCAGACTGTGGTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135574.8
CDS-3UTR CAA 90 bp ACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATAAAAGCAATGGAGAGGATTTCATATGGAGAGTaGACTCTGGCATCTCCACAG +
Preference number: 5 (lower is better)
Translates to: TLQLSLLWLSLSIKAMERISYGE*TLASPQ
Trigger: CTGTGGAGATGCCAGAGTCAACTCTCCATATGAAAT...CCTCTCCATTGCTTTTATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp ACCCTACAGTTGTCACTTCTGTGGCTATCATTATCTATAAAAGCAATGGAGAGGGGAAGTCTTCGTTTTTaGAGGATGGTTCAAACTCCT +
Preference number: 5 (lower is better)
Translates to: TLQLSLLWLSLSIKAMERGSLRF*RMVQTP
Trigger: AGGAGTTTGAACCATCCTCAAAAAACGAAGACTTCC...CCTCTCCATTGCTTTTATAGATAATGATAGCCACAGAAGTGACAACTGTAGGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS-3UTR CAA 90 bp TGTTCACCTGTGGCTTATCTTGAAATGTCATATAAACTTGTGCTGGTGAGACTTGGAAGTCTTCGTTTTTaGAGGATGGTTCAAACTCCT +
Preference number: 5 (lower is better)
Translates to: CSPVAYLEMSYKLVLVRLGSLRF*RMVQTP
Trigger: AGGAGTTTGAACCATCCTCAAAAAACGAAGACTTCC...AAGTCTCACCAGCACAAGTTTATATGACATTTCAAGATAAGCCACAGGTGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
CDS TCA 72 bp GAGCCAGCCTGGACCTGTCAGGCAGAGCCTGGCCCATaGGGTCCAGGGTGTGGTAGAGTAGCCGTCCTCGCC +
Preference number: 6 (lower is better)
Translates to: EPAWTCQAEPGP*GPGCGRVAVLA
Trigger: GGCGAGGACGGCTACTCTACCACACCCTGGACCTCATGGGCCAGGCTCTGCCTGACAGGTCCAGGCTGGCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS TCA 72 bp CAGGCAGCTGGCCGATTCCCTCCATCCTGTGGCTCATaGCCCGTGCAAGATGGCCCGTGTGGTGCAGGCTGC +
Preference number: 6 (lower is better)
Translates to: QAAGRFPPSCGS*PVQDGPCGAGC
Trigger: GCAGCCTGCACCACACGGGCCATCTTGCACGGGTCATGAGCCACAGGATGGAGGGAATCGGCCAGCTGCCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS TCA 72 bp CACTGCGAAAACTGGGGCGTGCACCGGGCCCGTCTGTaGCACCATTCGGTACTGCAGACCAGGCTTCAGCTC +
Preference number: 6 (lower is better)
Translates to: HCENWGVHRARL*HHSVLQTRLQL
Trigger: GAGCTGAAGCCTGGTCTGCAGTACCGAATGGTGTCACAGACGGGCCCGGTGCACGCCCCAGTTTTCGCAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 72 bp CTGGCCGATTCCCTCCATCCTGTGGCTCATGACCCGTaGAAGATGGCCCGTGTGGTGCAGGCTGCCCACAAT +
Preference number: 6 (lower is better)
Translates to: LADSLHPVAHDP*KMARVVQAAHN
Trigger: ATTGTGGGCAGCCTGCACCACACGGGCCATCTTGCACGGGTCATGAGCCACAGGATGGAGGGAATCGGCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CCA 72 bp CACGACCCAGTTGGCACTGAAGTGGGGAGACTTTCCTaGCTGCCGGGCCTCTGCGTGACTCACGCCACTAAG +
Preference number: 6 (lower is better)
Translates to: HDPVGTEVGRLS*LPGLCVTHATK
Trigger: CTTAGTGGCGTGAGTCACGCAGAGGCCCGGCAGCCAGGAAAGTCTCCCCACTTCAGTGCCAACTGGGTCGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CAA 90 bp TATGTGACCAGGCAGCCGGATATCGAAGAGGGCCTGCAAGGCAGCTaGTGCTGCTTGGCCCTTGGCCAGCTTCTTGCTGCGTCCAGAGCC +
Preference number: 6 (lower is better)
Translates to: YVTRQPDIEEGLQGS*CCLALGQLLAASRA
Trigger: GGCTCTGGACGCAGCAAGAAGCTGGCCAAGGGCCAAGCAGCACAAGCTGCCTTGCAGGCCCTCTTCGATATCCGGCTGCCTGGTCACATA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS TCA 72 bp AAGTGGGGAGACTTTCCTGGCTGCCGGGCCTCTGCGTaGCTCACGCCACTAAGGAGAGGCCTGTTTTGTCGG +
Preference number: 6 (lower is better)
Translates to: KWGDFPGCRASA*LTPLRRGLFCR
Trigger: CCGACAAAACAGGCCTCTCCTTAGTGGCGTGAGTCACGCAGAGGCCCGGCAGCCAGGAAAGTCTCCCCACTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 72 bp AGGCAGCTTGTGCTGCTTGGCCCTTGGCCAGCTTCTTaGTGCGTCCAGAGCCTTCGAACGTCCTCCCATCCA +
Preference number: 6 (lower is better)
Translates to: RQLVLLGPWPAS*CVQSLRTSSHP
Trigger: TGGATGGGAGGACGTTCGAAGGCTCTGGACGCAGCAAGAAGCTGGCCAAGGGCCAAGCAGCACAAGCTGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 72 bp CATGCAGCCGTGCCCACCAAGCAGAAAACACGTGTTTaGAGAGCCGGGATGAGCCCCCACAGCTCCTCTTCC +
Preference number: 6 (lower is better)
Translates to: HAAVPTKQKTRV*RAGMSPHSSSS
Trigger: GGAAGAGGAGCTGTGGGGGCTCATCCCGGCTCTGCAAACACGTGTTTTCTGCTTGGTGGGCACGGCTGCATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CCA 72 bp GGTAGGTGTGAGCCCCCTGCTTGGCCTCACAGTACATaGATGGTGTGTCTCCATGGCTGGGGATCCGTGTGC +
Preference number: 6 (lower is better)
Translates to: GRCEPPAWPHST*MVCLHGWGSVC
Trigger: GCACACGGATCCCCAGCCATGGAGACACACCATCCATGTACTGTGAGGCCAAGCAGGGGGCTCACACCTACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000135574.8
CDS CAA 72 bp CCATGCAGCCGTGCCCACCAAGCAGAAAACACGTGTTaGCAGAGCCGGGATGAGCCCCCACAGCTCCTCTTC +
Preference number: 6 (lower is better)
Translates to: PCSRAHQAENTC*QSRDEPPQLLF
Trigger: GAAGAGGAGCTGTGGGGGCTCATCCCGGCTCTGCAAACACGTGTTTTCTGCTTGGTGGGCACGGCTGCATGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000135574.8
CDS CAA 72 bp GCATGCAGCCGTGCCCACCAAGCAGAAAACACGTGTTaGCAGAGCCGGGATGAGCCCCCACAGCTCCTCTTC +
Preference number: 6 (lower is better)
Translates to: ACSRAHQAENTC*QSRDEPPQLLF
Trigger: GAAGAGGAGCTGTGGGGGCTCATCCCGGCTCTGCAAACACGTGTTTTCTGCTTGGTGGGCACGGCTGCATGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000123187.2
CDS CAA 90 bp CTTAGCCTACCATGCAGCCGTGCCCACCAAGCAGAAAACACGTGTTaGCAGAGCCGGGATGAGCCCCCACAGCTCCTCTTCCCAGTGGTG +
Preference number: 6 (lower is better)
Translates to: LSLPCSRAHQAENTC*QSRDEPPQLLFPVV
Trigger: CACCACTGGGAAGAGGAGCTGTGGGGGCTCATCCCGGCTCTGCAAACACGTGTTTTCTGCTTGGTGGGCACGGCTGCATGGTAGGCTAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000135574.8
CDS CAA 90 bp GTGTGCTTAGCATGCAGCCGTGCCCACCAAGCAGAAAACACGTGTTaGCAGAGCCGGGATGAGCCCCCACAGCTCCTCTTCCCAGTGGTG +
Preference number: 6 (lower is better)
Translates to: VCLACSRAHQAENTC*QSRDEPPQLLFPVV
Trigger: CACCACTGGGAAGAGGAGCTGTGGGGGCTCATCCCGGCTCTGCAAACACGTGTTTTCTGCTTGGTGGGCACGGCTGCATGCTAAGCACAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000123187.2
CDS GCA 72 bp CTGTGGCTCATGACCCGTGCAAGATGGCCCGTGTGGTaGAGGCTGCCCACAATGATGCTGTGGAGGTACACA +
Preference number: 6 (lower is better)
Translates to: LWLMTRARWPVW*RLPTMMLWRYT
Trigger: TGTGTACCTCCACAGCATCATTGTGGGCAGCCTGCACCACACGGGCCATCTTGCACGGGTCATGAGCCACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 72 bp ACTGAAGTGGGGAGACTTTCCTGGCTGCCGGGCCTCTaGGTGACTCACGCCACTAAGGAGAGGCCTGTTTTG +
Preference number: 6 (lower is better)
Translates to: TEVGRLSWLPGL*VTHATKERPVL
Trigger: CAAAACAGGCCTCTCCTTAGTGGCGTGAGTCACGCAGAGGCCCGGCAGCCAGGAAAGTCTCCCCACTTCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 72 bp CCATGGCTGGGGATCCGTGTGCTTAGCATGCAGCCGTaGCCACCAAGCAGAAAACACGTGTTTGCAGAGCCG +
Preference number: 6 (lower is better)
Translates to: PWLGIRVLSMQP*PPSRKHVFAEP
Trigger: CGGCTCTGCAAACACGTGTTTTCTGCTTGGTGGGCACGGCTGCATGCTAAGCACACGGATCCCCAGCCATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000123187.2
CDS CCA 72 bp ATCCTGTGGCTCATGACCCGTGCAAGATGGCCCGTGTaGTGCAGGCTGCCCACAATGATGCTGTGGAGGTAC +
Preference number: 6 (lower is better)
Translates to: ILWLMTRARWPV*CRLPTMMLWRY
Trigger: GTACCTCCACAGCATCATTGTGGGCAGCCTGCACCACACGGGCCATCTTGCACGGGTCATGAGCCACAGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CCA 72 bp ATTCCCTCCATCCTGTGGCTCATGACCCGTGCAAGATaGCCCGTGTGGTGCAGGCTGCCCACAATGATGCTG +
Preference number: 6 (lower is better)
Translates to: IPSILWLMTRAR*PVWCRLPTMML
Trigger: CAGCATCATTGTGGGCAGCCTGCACCACACGGGCCATCTTGCACGGGTCATGAGCCACAGGATGGAGGGAAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CCA 72 bp AGGAGAGGCCTGTTTTGTCGGTATGAGGCAGGCAGCTaGCCGATTCCCTCCATCCTGTGGCTCATGACCCGT +
Preference number: 6 (lower is better)
Translates to: RRGLFCRYEAGS*PIPSILWLMTR
Trigger: ACGGGTCATGAGCCACAGGATGGAGGGAATCGGCCAGCTGCCTGCCTCATACCGACAAAACAGGCCTCTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CAA 90 bp CCTTCGAACGTCCTCCCATCCACGCACACAGCCATGACAAAGCTCTaGACTCGGGGCTTCTCGGCTGTCTCGGAGAGGCACACATACCGA +
Preference number: 6 (lower is better)
Translates to: PSNVLPSTHTAMTKL*TRGFSAVSERHTYR
Trigger: TCGGTATGTGTGCCTCTCCGAGACAGCCGAGAAGCCCCGAGTCAAGAGCTTTGTCATGGCTGTGTGCGTGGATGGGAGGACGTTCGAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS TCA 72 bp CTCCTCCTCCTCCTCCTCTTGGACTTGCATTTGAGTTaGCTGCTTAGCCCTCCAGACCCTCTGCCACTCCCC +
Preference number: 6 (lower is better)
Translates to: LLLLLLLDLHLS*LLSPPDPLPLP
Trigger: GGGGAGTGGCAGAGGGTCTGGAGGGCTAAGCAGTCAACTCAAATGCAAGTCCAAGAGGAGGAGGAGGAGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CCA 72 bp TGGCCTCACAGTACATGGATGGTGTGTCTCCATGGCTaGGGATCCGTGTGCTTAGCCTACCATGCAGCCGTG +
Preference number: 6 (lower is better)
Translates to: WPHSTWMVCLHG*GSVCLAYHAAV
Trigger: CACGGCTGCATGGTAGGCTAAGCACACGGATCCCCAGCCATGGAGACACACCATCCATGTACTGTGAGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000135574.8
CDS GCA 72 bp GACACCATTCGGTACTGCAGACCAGGCTTCAGCTCATaGAGCTGGACCAGCGCATTCTTGGGTGTCACAGAC +
Preference number: 6 (lower is better)
Translates to: DTIRYCRPGFSS*SWTSAFLGVTD
Trigger: GTCTGTGACACCCAAGAATGCGCTGGTCCAGCTGCATGAGCTGAAGCCTGGTCTGCAGTACCGAATGGTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CCA 72 bp ATTCGGTACTGCAGACCAGGCTTCAGCTCATGCAGCTaGACCAGCGCATTCTTGGGTGTCACAGACCAGGAG +
Preference number: 6 (lower is better)
Translates to: IRYCRPGFSSCS*TSAFLGVTDQE
Trigger: CTCCTGGTCTGTGACACCCAAGAATGCGCTGGTCCAGCTGCATGAGCTGAAGCCTGGTCTGCAGTACCGAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CCA 72 bp TGCTTGGCCTCACAGTACATGGATGGTGTGTCTCCATaGCTGGGGATCCGTGTGCTTAGCCTACCATGCAGC +
Preference number: 6 (lower is better)
Translates to: CLASQYMDGVSP*LGIRVLSLPCS
Trigger: GCTGCATGGTAGGCTAAGCACACGGATCCCCAGCCATGGAGACACACCATCCATGTACTGTGAGGCCAAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064473.13
ENSMUST00000135574.8
CDS CAA 72 bp CCAGGCTTCAGCTCATGCAGCTGGACCAGCGCATTCTaGGGTGTCACAGACCAGGAGAGCTTCTTCCAGATC +
Preference number: 6 (lower is better)
Translates to: PGFSSCSWTSAF*GVTDQESFFQI
Trigger: GATCTGGAAGAAGCTCTCCTGGTCTGTGACACCCAAGAATGCGCTGGTCCAGCTGCATGAGCTGAAGCCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CAA 72 bp AGCCCCTGGTCACTGATGTGCTCACCGCTGATACACTaGGTCCCAGAGGACAGAACGATGACCTGCGCTTGT +
Preference number: 6 (lower is better)
Translates to: SPWSLMCSPLIH*VPEDRTMTCAC
Trigger: ACAAGCGCAGGTCATCGTTCTGTCCTCTGGGACCAAGTGTATCAGCGGTGAGCACATCAGTGACCAGGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CAA 90 bp TACTGCAGACCAGGCTTCAGCTCATGCAGCTGGACCAGCGCATTCTaGGGTGTCACAGACCAGGAGAGCTTCTTCCAGATCAGCTGGAGT +
Preference number: 6 (lower is better)
Translates to: YCRPGFSSCSWTSAF*GVTDQESFFQISWS
Trigger: ACTCCAGCTGATCTGGAAGAAGCTCTCCTGGTCTGTGACACCCAAGAATGCGCTGGTCCAGCTGCATGAGCTGAAGCCTGGTCTGCAGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CAA 90 bp TTGACAACCAGCCCCTGGTCACTGATGTGCTCACCGCTGATACACTaGGTCCCAGAGGACAGAACGATGACCTGCGCTTGTTTGGTGTCC +
Preference number: 6 (lower is better)
Translates to: LTTSPWSLMCSPLIH*VPEDRTMTCACLVS
Trigger: GGACACCAAACAAGCGCAGGTCATCGTTCTGTCCTCTGGGACCAAGTGTATCAGCGGTGAGCACATCAGTGACCAGGGGCTGGTTGTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 72 bp GTGCAGCTCCAGCTGAGAGTAGAGGAAGTGAAGAAATaGCCGCCTCGCCACGATCTCAGCATGACAGTCGTT +
Preference number: 6 (lower is better)
Translates to: VQLQLRVEEVKK*PPRHDLSMTVV
Trigger: AACGACTGTCATGCTGAGATCGTGGCGAGGCGGGCATTTCTTCACTTCCTCTACTCTCAGCTGGAGCTGCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 72 bp ACTGTTCCTTCCCCAGACTCAATCTTGGTGCGCAGGTaGCCTCGGAACTTCCTGACGATGTGTTTGCTGCTG +
Preference number: 6 (lower is better)
Translates to: TVPSPDSILVRR*PRNFLTMCLLL
Trigger: CAGCAGCAAACACATCGTCAGGAAGTTCCGAGGGCACCTGCGCACCAAGATTGAGTCTGGGGAAGGAACAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 72 bp GGGACACAGAGTCTGCAAAATCCTGTGGCAAGAGGTTaGTTTTACTCCTGCTGGGTATGTGACCAGGCAGCC +
Preference number: 6 (lower is better)
Translates to: GTQSLQNPVARG*FYSCWVCDQAA
Trigger: GGCTGCCTGGTCACATACCCAGCAGGAGTAAAAGCAACCTCTTGCCACAGGATTTTGCAGACTCTGTGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CCA 72 bp CCGACTGTCAGTTCACGGAACTTCTGTGTGACCAGCTaGGACACAGAGTCTGCAAAATCCTGTGGCAAGAGG +
Preference number: 6 (lower is better)
Translates to: PTVSSRNFCVTS*DTESAKSCGKR
Trigger: CCTCTTGCCACAGGATTTTGCAGACTCTGTGTCCCAGCTGGTCACACAGAAGTTCCGTGAACTGACAGTCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CAA 72 bp TCCAAGCCTTTGGTCATGACGATTCCTGCCAGTGTTTaGTGGCGGGCATACACAGATGTCAGGCCGACTGTC +
Preference number: 6 (lower is better)
Translates to: SKPLVMTIPASV*WRAYTDVRPTV
Trigger: GACAGTCGGCCTGACATCTGTGTATGCCCGCCACAAAACACTGGCAGGAATCGTCATGACCAAAGGCTTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CAA 72 bp TTGGTCCCAGAGGACAGAACGATGACCTGCGCTTGTTaGGTGTCCAAGCCTTTGGTCATGACGATTCCTGCC +
Preference number: 6 (lower is better)
Translates to: LVPEDRTMTCAC*VSKPLVMTIPA
Trigger: GGCAGGAATCGTCATGACCAAAGGCTTGGACACCAAACAAGCGCAGGTCATCGTTCTGTCCTCTGGGACCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CAA 90 bp TGTTTGGTGTCCAAGCCTTTGGTCATGACGATTCCTGCCAGTGTTTaGTGGCGGGCATACACAGATGTCAGGCCGACTGTCAGTTCACGG +
Preference number: 6 (lower is better)
Translates to: CLVSKPLVMTIPASV*WRAYTDVRPTVSSR
Trigger: CCGTGAACTGACAGTCGGCCTGACATCTGTGTATGCCCGCCACAAAACACTGGCAGGAATCGTCATGACCAAAGGCTTGGACACCAAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CAA 90 bp CCAGAGGACAGAACGATGACCTGCGCTTGTTTGGTGTCCAAGCCTTaGGTCATGACGATTCCTGCCAGTGTTTTGTGGCGGGCATACACA +
Preference number: 6 (lower is better)
Translates to: PEDRTMTCACLVSKP*VMTIPASVLWRAYT
Trigger: TGTGTATGCCCGCCACAAAACACTGGCAGGAATCGTCATGACCAAAGGCTTGGACACCAAACAAGCGCAGGTCATCGTTCTGTCCTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS TCA 72 bp ATGTCAGGCCGACTGTCAGTTCACGGAACTTCTGTGTaGCCAGCTGGGACACAGAGTCTGCAAAATCCTGTG +
Preference number: 6 (lower is better)
Translates to: MSGRLSVHGTSV*PAGTQSLQNPV
Trigger: CACAGGATTTTGCAGACTCTGTGTCCCAGCTGGTCACACAGAAGTTCCGTGAACTGACAGTCGGCCTGACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS GCA 72 bp CTGATACACTTGGTCCCAGAGGACAGAACGATGACCTaGGCTTGTTTGGTGTCCAAGCCTTTGGTCATGACG +
Preference number: 6 (lower is better)
Translates to: LIHLVPEDRTMT*ACLVSKPLVMT
Trigger: CGTCATGACCAAAGGCTTGGACACCAAACAAGCGCAGGTCATCGTTCTGTCCTCTGGGACCAAGTGTATCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CAA 72 bp AGAACGATGACCTGCGCTTGTTTGGTGTCCAAGCCTTaGGTCATGACGATTCCTGCCAGTGTTTTGTGGCGG +
Preference number: 6 (lower is better)
Translates to: RTMTCACLVSKP*VMTIPASVLWR
Trigger: CCGCCACAAAACACTGGCAGGAATCGTCATGACCAAAGGCTTGGACACCAAACAAGCGCAGGTCATCGTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CAA 72 bp ACACTTGGTCCCAGAGGACAGAACGATGACCTGCGCTaGTTTGGTGTCCAAGCCTTTGGTCATGACGATTCC +
Preference number: 6 (lower is better)
Translates to: TLGPRGQNDDLR*FGVQAFGHDDS
Trigger: GGAATCGTCATGACCAAAGGCTTGGACACCAAACAAGCGCAGGTCATCGTTCTGTCCTCTGGGACCAAGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CCA 72 bp TGTGACCAGCTGGGACACAGAGTCTGCAAAATCCTGTaGCAAGAGGTTGCTTTTACTCCTGCTGGGTATGTG +
Preference number: 6 (lower is better)
Translates to: CDQLGHRVCKIL*QEVAFTPAGYV
Trigger: CACATACCCAGCAGGAGTAAAAGCAACCTCTTGCCACAGGATTTTGCAGACTCTGTGTCCCAGCTGGTCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CAA 72 bp GTGCGCAGGTGCCCTCGGAACTTCCTGACGATGTGTTaGCTGCTGTTCAAGTCTGTGGTGATTTCATATGGA +
Preference number: 6 (lower is better)
Translates to: VRRCPRNFLTMC*LLFKSVVISYG
Trigger: TCCATATGAAATCACCACAGACTTGAACAGCAGCAAACACATCGTCAGGAAGTTCCGAGGGCACCTGCGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CAA 90 bp TCAATCTTGGTGCGCAGGTGCCCTCGGAACTTCCTGACGATGTGTTaGCTGCTGTTCAAGTCTGTGGTGATTTCATATGGAGAGTTGACT +
Preference number: 6 (lower is better)
Translates to: SILVRRCPRNFLTMC*LLFKSVVISYGELT
Trigger: AGTCAACTCTCCATATGAAATCACCACAGACTTGAACAGCAGCAAACACATCGTCAGGAAGTTCCGAGGGCACCTGCGCACCAAGATTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CAA 90 bp AGGTTATCTTCATCCTCTGTGTTTGTGGTGCCAGGACTTAGGTACTaGAAAGGAGCAAGGAAGGTTGACAGTATGCTGACTTTGTCTTTC +
Preference number: 6 (lower is better)
Translates to: RLSSSSVFVVPGLRY*KGARKVDSMLTLSF
Trigger: GAAAGACAAAGTCAGCATACTGTCAACCTTCCTTGCTCCTTTCAAGTACCTAAGTCCTGGCACCACAAACACAGAGGATGAAGATAACCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8
CDS CCA 72 bp TGCTCACATTTCGGTTTTCCTTCACTTCAGCACTGCTaGTACTTAGGTTATCTTCATCCTCTGTGTTTGTGG +
Preference number: 6 (lower is better)
Translates to: CSHFGFPSLQHC*YLGYLHPLCLW
Trigger: CCACAAACACAGAGGATGAAGATAACCTAAGTACCAGCAGTGCTGAAGTGAAGGAAAACCGAAATGTGAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064473.13
ENSMUST00000123187.2
ENSMUST00000135574.8