RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ADAMTSL4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000015850

Ensembl transcript IDs: ENSMUST00000015994.4, ENSMUST00000117782.8

Found 288 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGTCAGGTACACTTCTTGAGCTATCACACTGTAGGTCTCTCACCCTaGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAG +
Preference number: 1 (lower is better)
Translates to: GQVHFLSYHTVGLSP*RIPLARLRPGEKPE
Trigger: CTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCAGGGTGAGAGACCTACAGTGTGATAGCTCAAGAAGTGTACCTGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
3UTR CAA 90 bp ATAAACATACACAGGACAGACCCCCAGGCAGGTCAGGTACACTTCTaGAGCTATCACACTGTAGGTCTCTCACCCTGGAGGATCCCTCTG +
Preference number: 2 (lower is better)
Translates to: INIHRTDPQAGQVHF*SYHTVGLSPWRIPL
Trigger: CAGAGGGATCCTCCAGGGTGAGAGACCTACAGTGTGATAGCTCAAGAAGTGTACCTGACCTGCCTGGGGGTCTGTCCTGTGTATGTTTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
3UTR-3UTR TCA 90 bp CCTATTCTTTCTCAAGCTGCTTTTGTGGAAGTGATAAACATACACAGGACAGACTCCCTCTGGCAAGGCTaGGACCAGGTGAAAAGCCAG +
Preference number: 2 (lower is better)
Translates to: PILSQAAFVEVINIHRTDSLWQG*DQVKSQ
Trigger: CTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGA...GTCTGTCCTGTGTATGTTTATCACTTCCACAAAAGCAGCTTGAGAAAGAATAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
3UTR CCA 72 bp AAAAGCCAGAGGGTACAGAGCGGGCTAGTCAGTGGGTaGCACAAGAAAACCACGAAGGCAGGGTCTCTGGGA +
Preference number: 3 (lower is better)
Translates to: KSQRVQSGLVSG*HKKTTKAGSLG
Trigger: TCCCAGAGACCCTGCCTTCGTGGTTTTCTTGTGCCACCCACTGACTAGCCCGCTCTGTACCCTCTGGCTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
3UTR CCA 72 bp CACTTCTTGAGCTATCACACTGTAGGTCTCTCACCCTaGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAA +
Preference number: 3 (lower is better)
Translates to: HFLSYHTVGLSP*RIPLARLRPGE
Trigger: TTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCAGGGTGAGAGACCTACAGTGTGATAGCTCAAGAAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
3UTR GCA 72 bp ATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTaGTTTTGTGGAAGTGATAAACATACACAGGACAGA +
Preference number: 3 (lower is better)
Translates to: IQAPPTSYSFSS*FCGSDKHTQDR
Trigger: TCTGTCCTGTGTATGTTTATCACTTCCACAAAAGCAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp TGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGAGGGCGGCTTCTaGGAGGGCAGCCCTGCTCAG +
Preference number: 4 (lower is better)
Translates to: WRIPLARLRPGEKPEGTEREGGF*EGSPAQ
Trigger: CTGAGCAGGGCTGCCCTCTCAGAAGCCGCCCTCCCG...CTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp TCACACTGTAGGTCTCTCACCCTGGAGGATCCCTCTGGCAAGGCTGAGACCAGGGGATCCCGTGGAGTCTaGGGTCTGGAGCCCTGGCCC +
Preference number: 4 (lower is better)
Translates to: SHCRSLTLEDPSGKAETRGSRGV*GLEPWP
Trigger: GGGCCAGGGCTCCAGACCCCAGACTCCACGGGATCC...CCTGGTCTCAGCCTTGCCAGAGGGATCCTCCAGGGTGAGAGACCTACAGTGTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCTAGTCAGTGGGTGGCACAAGAAAACCACGAAGGCAGGGTCTCTGGGACCCGTGGATCCCGTGGAGTCTaGGGTCTGGAGCCCTGGCCC +
Preference number: 4 (lower is better)
Translates to: ASQWVAQENHEGRVSGTRGSRGV*GLEPWP
Trigger: GGGCCAGGGCTCCAGACCCCAGACTCCACGGGATCC...ACGGGTCCCAGAGACCCTGCCTTCGTGGTTTTCTTGTGCCACCCACTGACTAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp TCACCCTGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTCACATGTTCGGCTCCTaGGCTGCACCCCCACCCCAC +
Preference number: 4 (lower is better)
Translates to: SPWRIPLARLRPGEKPEGHMFGS*AAPPPH
Trigger: GTGGGGTGGGGGTGCAGCGCAGGAGCCGAACATGTG...ACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCAGGGTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCTAGTCAGTGGGTGGCACAAGAAAACCACGAAGGCAGGGTCTCTGGGACCCGTGGCTTCTGGATGTCTTaGGGGTCGGGGAGGGAGGGG +
Preference number: 4 (lower is better)
Translates to: ASQWVAQENHEGRVSGTRGFWMS*GSGREG
Trigger: CCCCTCCCTCCCCGACCCCCAAGACATCCAGAAGCC...ACGGGTCCCAGAGACCCTGCCTTCGTGGTTTTCTTGTGCCACCCACTGACTAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp AGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGCTAGTCAGTGGGTGGGGCAGCCAGCCATCTaGGGACCTGTGAGGACCTGG +
Preference number: 4 (lower is better)
Translates to: RLRPGEKPEGTERASQWVGQPAI*GPVRTW
Trigger: CCAGGTCCTCACAGGTCCCCAGATGGCTGGCTGCCC...CACCCACTGACTAGCCCGCTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp ATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGCTGGCCCCCTCGGTCAGTaGGATTTCCCGAAACCAGGC +
Preference number: 4 (lower is better)
Translates to: IPLARLRPGEKPEGTERAGPLGQ*DFPKPG
Trigger: GCCTGGTTTCGGGAAATCTCACTGACCGAGGGGGCC...AGCCCGCTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp ATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGCTACTTGCCGGCTCCTCTaGCCACGACCACAGCGCACA +
Preference number: 4 (lower is better)
Translates to: IPLARLRPGEKPEGTERATCRLL*PRPQRT
Trigger: TGTGCGCTGTGGTCGTGGTCAGAGGAGCCGGCAAGT...AGCCCGCTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp AGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGCTAGTCAGTGGGTGCACTCCAGGGGCCTGTaGACCAGCGCCATGTCCTCT +
Preference number: 4 (lower is better)
Translates to: RLRPGEKPEGTERASQWVHSRGL*TSAMSS
Trigger: AGAGGACATGGCGCTGGTTCACAGGCCCCTGGAGTG...CACCCACTGACTAGCCCGCTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp GCTAGTCAGTGGGTGGCACAAGAAAACCACGAAGGCAGGGTCTCTGGGACCCGTCACTCCAGGGGCCTGTaGACCAGCGCCATGTCCTCT +
Preference number: 4 (lower is better)
Translates to: ASQWVAQENHEGRVSGTRHSRGL*TSAMSS
Trigger: AGAGGACATGGCGCTGGTTCACAGGCCCCTGGAGTG...ACGGGTCCCAGAGACCCTGCCTTCGTGGTTTTCTTGTGCCACCCACTGACTAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp AGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGCTAGTCAGTGGGTGGCACAACAGTGCCTCCTGCTCTaGTGGCTCCGGGGGACAGGA +
Preference number: 4 (lower is better)
Translates to: RPGEKPEGTERASQWVAQQCLLL*WLRGTG
Trigger: TCCTGTCCCCCGGAGCCAGCAGAGCAGGAGGCACTG...TTGTGCCACCCACTGACTAGCCCGCTCTGTACCCTCTGGCTTTTCACCTGGTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp CCTTTCTCCCCAGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTAGTCTCCAGTGCCTCCTaGTCTGCTGGCTCCGGGGGA +
Preference number: 4 (lower is better)
Translates to: PFSPAQKSMRDTGTAHFLVSSAS*SAGSGG
Trigger: TCCCCCGGAGCCAGCAGAGCAGGAGGCACTGGAGAC...TAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCTGGGGAGAAAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp TCACCCTGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTCCTGGAGGTCTCCAGTaGCTCCTGCTCTGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: SPWRIPLARLRPGEKPEGPGGLQ*LLLCWL
Trigger: GAGCCAGCAGAGCAGGAGGCACTGGAGACCTCCAGG...ACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCAGGGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp GCTAGTCAGTGGGTGGCACAAGAAAACCACGAAGGCAGGGTCTCTGGGACCCGTAGCCATCCGGACGCCTaGCAGAGCCAAGGACCCCAT +
Preference number: 4 (lower is better)
Translates to: ASQWVAQENHEGRVSGTRSHPDA*QSQGPH
Trigger: ATGGGGTCCTTGGCTCTGGCAGGCGTCCGGATGGCT...ACGGGTCCCAGAGACCCTGCCTTCGTGGTTTTCTTGTGCCACCCACTGACTAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp AGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGCTAGTCAGTGGGTGAGGCCTTCAGGGACCTaGCCCTCCTCTGATGGCAGC +
Preference number: 4 (lower is better)
Translates to: RLRPGEKPEGTERASQWVRPSGT*PSSDGS
Trigger: GCTGCCATCAGAGGAGGGCCAGGTCCCTGAAGGCCT...CACCCACTGACTAGCCCGCTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCAGGTCAGGTACACTTCTTGAGCTATCACACTGTAGGTCTCTCACCCTGGAGGACGTTGGAGGGTGCCTaGTGCCCGGACTGGGCGGGG +
Preference number: 4 (lower is better)
Translates to: AGQVHFLSYHTVGLSPWRTLEGA*CPDWAG
Trigger: CCCCGCCCAGTCCGGGCACCAGGCACCCTCCAACGT...CCTCCAGGGTGAGAGACCTACAGTGTGATAGCTCAAGAAGTGTACCTGACCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp CATACACAGGACAGACCCCCAGGCAGGTCAGGTACACTTCTTGAGCTATCACACACGTTGGAGGGTGCCTaGTGCCCGGACTGGGCGGGG +
Preference number: 4 (lower is better)
Translates to: HTQDRPPGRSGTLLELSHTLEGA*CPDWAG
Trigger: CCCCGCCCAGTCCGGGCACCAGGCACCCTCCAACGT...GTGTGATAGCTCAAGAAGTGTACCTGACCTGCCTGGGGGTCTGTCCTGTGTATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCTAGTCAGTGGGTGGCACAAGAAAACCACGAAGGCAGGGTCTCTGGGACCCGTTGTCTGCAGAGTAGCTaGCGGTGCTGGGTGCCAGGG +
Preference number: 4 (lower is better)
Translates to: ASQWVAQENHEGRVSGTRCLQSS*RCWVPG
Trigger: CCCTGGCACCCAGCACCGCCAGCTACTCTGCAGACA...ACGGGTCCCAGAGACCCTGCCTTCGTGGTTTTCTTGTGCCACCCACTGACTAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp CCTTTCTCCCCAGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTAGCAGGGCAGGCGGCCTaGGTAGGTGGGAACAGTTGC +
Preference number: 4 (lower is better)
Translates to: PFSPAQKSMRDTGTAHFLAGQAA*VGGNSC
Trigger: GCAACTGTTCCCACCTACCCAGGCCGCCTGCCCTGC...TAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCTGGGGAGAAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp TGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGGCTGACAAGGCTGGGTaGTGTTGGGCCGGGGGAGAT +
Preference number: 4 (lower is better)
Translates to: WRIPLARLRPGEKPEGTEADKAG*CWAGGD
Trigger: ATCTCCCCCGGCCCAACATCACCCAGCCTTGTCAGC...CTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp TGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGCCTGGAGGTCTCCAGTaGCTCCTGCTCTGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: WRIPLARLRPGEKPEGTEPGGLQ*LLLCWL
Trigger: GAGCCAGCAGAGCAGGAGGCACTGGAGACCTCCAGG...CTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp GCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACGCTGGCGGTGCTGGGTaGCAGGGCCACAGGATCGGC +
Preference number: 4 (lower is better)
Translates to: ATGARMSYADVSLFHPRHAGGAG*QGHRIG
Trigger: GCCGATCCTGTGGCCCTGGCACCCAGCACCGCCAGC...GTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp AGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGCTAGTCAGTGGGTGGCACAAGGCAGCCCTGCTCAGTaGTTCCTGCTTCCGGGTCTC +
Preference number: 4 (lower is better)
Translates to: RPGEKPEGTERASQWVAQGSPAQ*FLLPGL
Trigger: GAGACCCGGAAGCAGGAAGCACTGAGCAGGGCTGCC...TTGTGCCACCCACTGACTAGCCCGCTCTGTACCCTCTGGCTTTTCACCTGGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp AGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGCTAGTCAGTGGGTGCTGAGAGGGCAGCCCTaGTCAGTGCTTCCTGCTTCC +
Preference number: 4 (lower is better)
Translates to: RLRPGEKPEGTERASQWVLRGQP*SVLPAS
Trigger: GGAAGCAGGAAGCACTGAGCAGGGCTGCCCTCTCAG...CACCCACTGACTAGCCCGCTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp GCTAGTCAGTGGGTGGCACAAGAAAACCACGAAGGCAGGGTCTCTGGGACCCGTCTTCCCTCGTCTGCATaGCTCCCTGGCAGGATCGAG +
Preference number: 4 (lower is better)
Translates to: ASQWVAQENHEGRVSGTRLPSSA*LPGRIE
Trigger: CTCGATCCTGCCAGGGAGGCATGCAGACGAGGGAAG...ACGGGTCCCAGAGACCCTGCCTTCGTGGTTTTCTTGTGCCACCCACTGACTAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp GCTAGTCAGTGGGTGGCACAAGAAAACCACGAAGGCAGGGTCTCTGGGACCCGTTGCAGGGTTGGCTGTTaGAGGGCCGCTTCCTGGAAG +
Preference number: 4 (lower is better)
Translates to: ASQWVAQENHEGRVSGTRCRVGC*RAASWK
Trigger: CTTCCAGGAAGCGGCCCTGCAACAGCCAACCCTGCA...ACGGGTCCCAGAGACCCTGCCTTCGTGGTTTTCTTGTGCCACCCACTGACTAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp TTTCTCCCCAGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTGGGCCGGTGGGCTTCTaGATGTCTTGGGGGTCGGGG +
Preference number: 4 (lower is better)
Translates to: FLPSPEKHEGYRHRPLPIGPVGF*MSWGSG
Trigger: CCCCGACCCCCAAGACATCCAGAAGCCCACCGGCCC...AATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCTGGGGAGAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCAGGTCAGGTACACTTCTTGAGCTATCACACTGTAGGTCTCTCACCCTGGAGGTGGCCCCGGGGCCGGTaGGCTTCTGGATGTCTTGGG +
Preference number: 4 (lower is better)
Translates to: AGQVHFLSYHTVGLSPWRWPRGR*ASGCLG
Trigger: CCCAAGACATCCAGAAGCCCACCGGCCCCGGGGCCA...CCTCCAGGGTGAGAGACCTACAGTGTGATAGCTCAAGAAGTGTACCTGACCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp TTTCTCCCCAGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTTGGCCCCGGGGCCGGTaGGCTTCTGGATGTCTTGGG +
Preference number: 4 (lower is better)
Translates to: FLPSPEKHEGYRHRPLPIWPRGR*ASGCLG
Trigger: CCCAAGACATCCAGAAGCCCACCGGCCCCGGGGCCA...AATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCTGGGGAGAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp CCTTTCTCCCCAGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTAAGACTGGGGATCCCGTaGAGTCTGGGGTCTGGAGCC +
Preference number: 4 (lower is better)
Translates to: PFSPAQKSMRDTGTAHFLRLGIP*SLGSGA
Trigger: GGCTCCAGACCCCAGACTCCACGGGATCCCCAGTCT...TAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCTGGGGAGAAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp TGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGCGTCGCTCTGCTCCCTaGGGACTGCTCCAACTTCCC +
Preference number: 4 (lower is better)
Translates to: WRIPLARLRPGEKPEGTERRSAP*GLLQLP
Trigger: GGGAAGTTGGAGCAGTCCCCAGGGAGCAGAGCGACG...CTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCTAGTCAGTGGGTGGCACAAGAAAACCACGAAGGCAGGGTCTCTGGGACCCGTCAAGCCGGTTCCAGCTaGGACTGCTCCAGGACATGG +
Preference number: 4 (lower is better)
Translates to: ASQWVAQENHEGRVSGTRQAGSS*DCSRTW
Trigger: CCATGTCCTGGAGCAGTCCCAGCTGGAACCGGCTTG...ACGGGTCCCAGAGACCCTGCCTTCGTGGTTTTCTTGTGCCACCCACTGACTAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp GCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGCCCTGGAGAGGTCGCAACTGGGAAATGTaGAGGTGGGAGGCCCCGGCA +
Preference number: 4 (lower is better)
Translates to: ADVSLFHPRHKWSLPWRGRNWEM*RWEAPA
Trigger: TGCCGGGGCCTCCCACCTTCACATTTCCCAGTTGCG...ACCTCTCCAGGGCAGGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp TGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGTGTCCCGCACTCGGCTaGGCACTTGGAACTCCAGTC +
Preference number: 4 (lower is better)
Translates to: WRIPLARLRPGEKPEGTECPALG*ALGTPV
Trigger: GACTGGAGTTCCAAGTGCTCAGCCGAGTGCGGGACA...CTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp AGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAACGGGAGGGCGGCTTCTaGGAGGGCAGCCCTGCTCAG +
Preference number: 4 (lower is better)
Translates to: SPEKHEGYRHRPLPILSQREGGF*EGSPAQ
Trigger: CTGAGCAGGGCTGCCCTCTCAGAAGCCGCCCTCCCG...TTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp AGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGCTAGTCAGTGGGTGTGGGAGAAGTCACATTaGACTCGGCCCCCAGCTTGG +
Preference number: 4 (lower is better)
Translates to: RLRPGEKPEGTERASQWVWEKSH*TRPPAW
Trigger: CCAAGCTGGGGGCCGAGTTCAATGTGACTTCTCCCA...CACCCACTGACTAGCCCGCTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp TGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGCCCTGTTCGGCTCCTGCGCTaGACCCCCACCCCACAGGGC +
Preference number: 4 (lower is better)
Translates to: CLMLTFLFFTLDTSGPCPVRLLR*TPTPQG
Trigger: GCCCTGTGGGGTGGGGGTGCAGCGCAGGAGCCGAAC...AGGGCAGGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp TCACACTGTAGGTCTCTCACCCTGGAGGATCCCTCTGGCAAGGCTGAGACCAGGACAGACTCTCCCCCTTaGCTTCTTCCCGTGGAGGAC +
Preference number: 4 (lower is better)
Translates to: SHCRSLTLEDPSGKAETRTDSPP*LLPVED
Trigger: GTCCTCCACGGGAAGAAGGCAAGGGGGAGAGTCTGT...CCTGGTCTCAGCCTTGCCAGAGGGATCCTCCAGGGTGAGAGACCTACAGTGTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp AGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCTTTTGTGGAAGGCTGGCGGTGCTGGGTaGCAGGGCCACAGGATCGGC +
Preference number: 4 (lower is better)
Translates to: RDTGTAHFLFFLKLLLWKAGGAG*QGHRIG
Trigger: GCCGATCCTGTGGCCCTGGCACCCAGCACCGCCAGC...CTTCCACAAAAGCAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCAGGTCAGGTACACTTCTTGAGCTATCACACTGTAGGTCTCTCACCCTGGAGGGGCTTCTGGATGTCTTaGGGGTCGGGGAGGGAGGGG +
Preference number: 4 (lower is better)
Translates to: AGQVHFLSYHTVGLSPWRGFWMS*GSGREG
Trigger: CCCCTCCCTCCCCGACCCCCAAGACATCCAGAAGCC...CCTCCAGGGTGAGAGACCTACAGTGTGATAGCTCAAGAAGTGTACCTGACCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCTAGTCAGTGGGTGGCACAAGAAAACCACGAAGGCAGGGTCTCTGGGACCCGTTGCTCCAGAGTGGGCTaGAGTCTCTTGTCAGGGGCA +
Preference number: 4 (lower is better)
Translates to: ASQWVAQENHEGRVSGTRCSRVG*SLLSGA
Trigger: TGCCCCTGACAAGAGACTCCAGCCCACTCTGGAGCA...ACGGGTCCCAGAGACCCTGCCTTCGTGGTTTTCTTGTGCCACCCACTGACTAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGCCCTGGAGAGGTAGTAGCTGGCGGTGCTaGGTGCCAGGGCCACAGGAT +
Preference number: 4 (lower is better)
Translates to: ADVSLFHPRHKWSLPWRGSSWRC*VPGPQD
Trigger: ATCCTGTGGCCCTGGCACCCAGCACCGCCAGCTACT...ACCTCTCCAGGGCAGGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp TGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGAGCTGAGAGTCTaGTTGCCACTCAGGCACTGG +
Preference number: 4 (lower is better)
Translates to: WRIPLARLRPGEKPEGTERELRV*LPLRHW
Trigger: CCAGTGCCTGAGTGGCAACCAGACTCTCAGCTCCCG...CTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp TCACACTGTAGGTCTCTCACCCTGGAGGATCCCTCTGGCAAGGCTGAGACCAGGGGGAGCACTTCTGTCTaGGCAGTTCCAGACCTTGGA +
Preference number: 4 (lower is better)
Translates to: SHCRSLTLEDPSGKAETRGSTSV*AVPDLG
Trigger: TCCAAGGTCTGGAACTGCTCAGACAGAAGTGCTCCC...CCTGGTCTCAGCCTTGCCAGAGGGATCCTCCAGGGTGAGAGACCTACAGTGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp CATACACAGGACAGACCCCCAGGCAGGTCAGGTACACTTCTTGAGCTATCACACGGTAGGGCCTTCTGCTaGCAGACTCTCCCCCTTGCC +
Preference number: 4 (lower is better)
Translates to: HTQDRPPGRSGTLLELSHGRAFC*QTLPLA
Trigger: GGCAAGGGGGAGAGTCTGTCAGCAGAAGGCCCTACC...GTGTGATAGCTCAAGAAGTGTACCTGACCTGCCTGGGGGTCTGTCCTGTGTATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp TTTCTCCCCAGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTGCTGACAAGGCTGGGTaGTGTTGGGCCGGGGGAGAT +
Preference number: 4 (lower is better)
Translates to: FLPSPEKHEGYRHRPLPIADKAG*CWAGGD
Trigger: ATCTCCCCCGGCCCAACATCACCCAGCCTTGTCAGC...AATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCTGGGGAGAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp CTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCGTTCGGCTCCTGCGCTaGACCCCCACCCCACAGGGC +
Preference number: 4 (lower is better)
Translates to: LGCLMLTFLFFTLDTSGPVRLLR*TPTPQG
Trigger: GCCCTGTGGGGTGGGGGTGCAGCGCAGGAGCCGAAC...GGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp TTTCTCCCCAGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTCTGCTCCCTGGGGACTaGTCCAACTTCCCGGGGAAG +
Preference number: 4 (lower is better)
Translates to: FLPSPEKHEGYRHRPLPILLPGD*SNFPGK
Trigger: CTTCCCCGGGAAGTTGGAGCAGTCCCCAGGGAGCAG...AATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCTGGGGAGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp TGGCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACCAGTGCCTCCTGCTCTaGTGGCTCCGGGGGACAGGA +
Preference number: 4 (lower is better)
Translates to: WRLGLGCLMLTFLFFTLDQCLLL*WLRGTG
Trigger: TCCTGTCCCCCGGAGCCAGCAGAGCAGGAGGCACTG...GTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp GCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGCCCTGGAGAGGTGGCAAGGCTCCTGGCTaGAGGCTCGCATCTGTTCAC +
Preference number: 4 (lower is better)
Translates to: ADVSLFHPRHKWSLPWRGGKAPG*RLASVH
Trigger: GTGAACAGATGCGAGCCTGCAGCCAGGAGCCTTGCC...ACCTCTCCAGGGCAGGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp ATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGCTCTCCGAATTCCTGTCTaGAGAGTAGCTGGCGGTGCT +
Preference number: 4 (lower is better)
Translates to: IPLARLRPGEKPEGTERALRIPV*RVAGGA
Trigger: AGCACCGCCAGCTACTCTGCAGACAGGAATTCGGAG...AGCCCGCTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp TCACCCTGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTGCTTGGAGGCTGAGATaGAACCATCCCTTCCCCTGT +
Preference number: 4 (lower is better)
Translates to: SPWRIPLARLRPGEKPEGAWRLR*NHPFPC
Trigger: ACAGGGGAAGGGATGGTTCCATCTCAGCCTCCAAGC...ACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCAGGGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp TCACCCTGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTGGCCCAAGGGATCCCTaGAAAGACCTACTGTCTCCA +
Preference number: 4 (lower is better)
Translates to: SPWRIPLARLRPGEKPEGGPRDP*KDLLSP
Trigger: TGGAGACAGTAGGTCTTTCCAGGGATCCCTTGGGCC...ACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCAGGGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp TCACACTGTAGGTCTCTCACCCTGGAGGATCCCTCTGGCAAGGCTGAGACCAGGGGAGTGCGAGGTAATTaGAACTGGGTCGCAACTGGG +
Preference number: 4 (lower is better)
Translates to: SHCRSLTLEDPSGKAETRGVRGN*NWVATG
Trigger: CCCAGTTGCGACCCAGTTCCAATTACCTCGCACTCC...CCTGGTCTCAGCCTTGCCAGAGGGATCCTCCAGGGTGAGAGACCTACAGTGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp TTTCTCCCCAGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTTGTCTGCAGAGTAGCTaGCGGTGCTGGGTGCCAGGG +
Preference number: 4 (lower is better)
Translates to: FLPSPEKHEGYRHRPLPICLQSS*RCWVPG
Trigger: CCCTGGCACCCAGCACCGCCAGCTACTCTGCAGACA...AATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCTGGGGAGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp CCTTTCTCCCCAGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATGTAGAACCAGGCTGTaGTGCAGGGGCCCATGTCAC +
Preference number: 4 (lower is better)
Translates to: PFSPAQKSMRDTGTAHFLCRTRL*CRGPCH
Trigger: GTGACATGGGCCCCTGCACCACAGCCTGGTTCTACA...TAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCTGGGGAGAAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp AACATACACAGGACAGACCCCCAGGCAGGTCAGGTACACTTCTTGAGCTATCACGCAGGGCAGGCGGCCTaGGTAGGTGGGAACAGTTGC +
Preference number: 4 (lower is better)
Translates to: NIHRTDPQAGQVHFLSYHAGQAA*VGGNSC
Trigger: GCAACTGTTCCCACCTACCCAGGCCGCCTGCCCTGC...GTGATAGCTCAAGAAGTGTACCTGACCTGCCTGGGGGTCTGTCCTGTGTATGTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp TGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGTCTGTGCTTGGAGGCTaGGATGGAACCATCCCTTCC +
Preference number: 4 (lower is better)
Translates to: WRIPLARLRPGEKPEGTESVLGG*DGTIPS
Trigger: GGAAGGGATGGTTCCATCTCAGCCTCCAAGCACAGA...CTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp TGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGGGGAGCACTTCTGTCTaGGCAGTTCCAGACCTTGGA +
Preference number: 4 (lower is better)
Translates to: WRIPLARLRPGEKPEGTEGSTSV*AVPDLG
Trigger: TCCAAGGTCTGGAACTGCTCAGACAGAAGTGCTCCC...CTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp CATACACAGGACAGACCCCCAGGCAGGTCAGGTACACTTCTTGAGCTATCACACGAGGGCATCGGGAGCTaGGAGTCTGGTTGCCACTCA +
Preference number: 4 (lower is better)
Translates to: HTQDRPPGRSGTLLELSHEGIGS*ESGCHS
Trigger: TGAGTGGCAACCAGACTCTCAGCTCCCGATGCCCTC...GTGTGATAGCTCAAGAAGTGTACCTGACCTGCCTGGGGGTCTGTCCTGTGTATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp CTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGCCCTGGACTGGAAGGTCTCAGGTaGGGAGGGCATCGGGAGCTG +
Preference number: 4 (lower is better)
Translates to: LMLTFLFFTLDTSGPCPGLEGLR*GGHREL
Trigger: CAGCTCCCGATGCCCTCCTCACCTGAGACCTTCCAG...TCCAGGGCAGGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp AGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAACACATGTTCGGCTCCTaGGCTGCACCCCCACCCCAC +
Preference number: 4 (lower is better)
Translates to: SPEKHEGYRHRPLPILSQHMFGS*AAPPPH
Trigger: GTGGGGTGGGGGTGCAGCGCAGGAGCCGAACATGTG...TTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp TGGCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACTGCCTGCGGCTCCGGTaGAGAGGCAAGGCAAAAGGC +
Preference number: 4 (lower is better)
Translates to: WRLGLGCLMLTFLFFTLDCLRLR*RGKAKG
Trigger: GCCTTTTGCCTTGCCTCTGCACCGGAGCCGCAGGCA...GTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp TCACCCTGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTTACTGGGAGCAAAGATaGTCCAGAGTGGGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: SPWRIPLARLRPGEKPEGYWEQR*SRVGWS
Trigger: ACTCCAGCCCACTCTGGAGCATCTTTGCTCCCAGTA...ACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCAGGGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp CATACACAGGACAGACCCCCAGGCAGGTCAGGTACACTTCTTGAGCTATCACACGGCAAGGCTCCTGGCTaGAGGCTCGCATCTGTTCAC +
Preference number: 4 (lower is better)
Translates to: HTQDRPPGRSGTLLELSHGKAPG*RLASVH
Trigger: GTGAACAGATGCGAGCCTGCAGCCAGGAGCCTTGCC...GTGTGATAGCTCAAGAAGTGTACCTGACCTGCCTGGGGGTCTGTCCTGTGTATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp TGGCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACAGCCATCCGGACGCCTaGCAGAGCCAAGGACCCCAT +
Preference number: 4 (lower is better)
Translates to: WRLGLGCLMLTFLFFTLDSHPDA*QSQGPH
Trigger: ATGGGGTCCTTGGCTCTGGCAGGCGTCCGGATGGCT...GTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp CAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCAGAGTAGCTGGCGGTaGTGGGTGCCAGGGCCACAG +
Preference number: 4 (lower is better)
Translates to: QKSMRDTGTAHFLFFLKLQSSWR*WVPGPQ
Trigger: CTGTGGCCCTGGCACCCAGCACCGCCAGCTACTCTG...CAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp GCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACGGCAGCCCTGCTCAGTaGTTCCTGCTTCCGGGTCTC +
Preference number: 4 (lower is better)
Translates to: ATGARMSYADVSLFHPRHGSPAQ*FLLPGL
Trigger: GAGACCCGGAAGCAGGAAGCACTGAGCAGGGCTGCC...GTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp CCTTTCTCCCCAGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATGTCTCTGTGTTGTGTaGCAGACCCACACTCCGAGG +
Preference number: 4 (lower is better)
Translates to: PFSPAQKSMRDTGTAHFLCLCVV*QTHTPR
Trigger: CCTCGGAGTGTGGGTCTGGCACACAACACAGAGACA...TAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCTGGGGAGAAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp CATACACAGGACAGACCCCCAGGCAGGTCAGGTACACTTCTTGAGCTATCACACTGCAGGGTTGGCTGTTaGAGGGCCGCTTCCTGGAAG +
Preference number: 4 (lower is better)
Translates to: HTQDRPPGRSGTLLELSHCRVGC*RAASWK
Trigger: CTTCCAGGAAGCGGCCCTGCAACAGCCAACCCTGCA...GTGTGATAGCTCAAGAAGTGTACCTGACCTGCCTGGGGGTCTGTCCTGTGTATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp TGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGGCTTGGAGGCTGAGATaGAACCATCCCTTCCCCTGT +
Preference number: 4 (lower is better)
Translates to: WRIPLARLRPGEKPEGTEAWRLR*NHPFPC
Trigger: ACAGGGGAAGGGATGGTTCCATCTCAGCCTCCAAGC...CTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp TGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGCCCTTGCCTCCTGCTCTGCTaGCTCCGGGGGACAGGAGAG +
Preference number: 4 (lower is better)
Translates to: CLMLTFLFFTLDTSGPCPCLLLC*LRGTGE
Trigger: CTCTCCTGTCCCCCGGAGCCAGCAGAGCAGGAGGCA...AGGGCAGGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCAGGTCAGGTACACTTCTTGAGCTATCACACTGTAGGTCTCTCACCCTGGAGGGGACCTGTGAGGACCTaGAGGTCTCCAGTGCCTCCT +
Preference number: 4 (lower is better)
Translates to: AGQVHFLSYHTVGLSPWRGPVRT*RSPVPP
Trigger: AGGAGGCACTGGAGACCTCCAGGTCCTCACAGGTCC...CCTCCAGGGTGAGAGACCTACAGTGTGATAGCTCAAGAAGTGTACCTGACCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp AGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGCTAGTCAGTGGGTGTTCCCCAGAACAGTTTaGAGCAGGGATACTGGGAGC +
Preference number: 4 (lower is better)
Translates to: RLRPGEKPEGTERASQWVFPRTV*SRDTGS
Trigger: GCTCCCAGTATCCCTGCTCCAAACTGTTCTGGGGAA...CACCCACTGACTAGCCCGCTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp TGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGGGCTGTATAGGACCCTaGAGGATCCACAGCCCAGTT +
Preference number: 4 (lower is better)
Translates to: WRIPLARLRPGEKPEGTEGCIGP*RIHSPV
Trigger: AACTGGGCTGTGGATCCTCCAGGGTCCTATACAGCC...CTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACGCCAGCCTCCCAGTATaGAGGACACGGGGGTCCATG +
Preference number: 4 (lower is better)
Translates to: ATGARMSYADVSLFHPRHASLPV*RTRGSM
Trigger: CATGGACCCCCGTGTCCTCCATACTGGGAGGCTGGC...GTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCTAGTCAGTGGGTGGCACAAGAAAACCACGAAGGCAGGGTCTCTGGGACCCGTGAGCTGTCCTTGCATTaGTCATCTGGTCGCTGGTTG +
Preference number: 4 (lower is better)
Translates to: ASQWVAQENHEGRVSGTRELSLH*SSGRWL
Trigger: CAACCAGCGACCAGATGACCAATGCAAGGACAGCTC...ACGGGTCCCAGAGACCCTGCCTTCGTGGTTTTCTTGTGCCACCCACTGACTAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
3UTR CAA 72 bp CACAGGACAGACCCCCAGGCAGGTCAGGTACACTTCTaGAGCTATCACACTGTAGGTCTCTCACCCTGGAGG +
Preference number: 4 (lower is better)
Translates to: HRTDPQAGQVHF*SYHTVGLSPWR
Trigger: CCTCCAGGGTGAGAGACCTACAGTGTGATAGCTCAAGAAGTGTACCTGACCTGCCTGGGGGTCTGTCCTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp GCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACGACCTGGCCCTCCTCTaGTGGCAGCTGATGAGAAGG +
Preference number: 4 (lower is better)
Translates to: ATGARMSYADVSLFHPRHDLALL*WQLMRR
Trigger: CCTTCTCATCAGCTGCCATCAGAGGAGGGCCAGGTC...GTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp GGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCTTTTGTGGAAGTGCCATCTGGGGACCTGTaGGGACCTGGAGGTCTCCAG +
Preference number: 4 (lower is better)
Translates to: GYRHRPLPILSQAAFVEVPSGDL*GPGGLQ
Trigger: CTGGAGACCTCCAGGTCCTCACAGGTCCCCAGATGG...CACTTCCACAAAAGCAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp CAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGGGCCCCCTCGGTCAGTaGGATTTCCCGAAACCAGGC +
Preference number: 4 (lower is better)
Translates to: QKSMRDTGTAHFLFFLKLGPLGQ*DFPKPG
Trigger: GCCTGGTTTCGGGAAATCTCACTGACCGAGGGGGCC...CAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp GGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCTTTTGTGGAAGTGGGTAGGGCCTTCTGCTaGCAGACTCTCCCCCTTGCC +
Preference number: 4 (lower is better)
Translates to: GYRHRPLPILSQAAFVEVGRAFC*QTLPLA
Trigger: GGCAAGGGGGAGAGTCTGTCAGCAGAAGGCCCTACC...CACTTCCACAAAAGCAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp GGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCTTTTGTGGAAGTGTGGGGAATCCGCACCTaGCGTTGGAGGGTGCCTGGT +
Preference number: 4 (lower is better)
Translates to: GYRHRPLPILSQAAFVEVWGIRT*RWRVPG
Trigger: ACCAGGCACCCTCCAACGTCAGGTGCGGATTCCCCA...CACTTCCACAAAAGCAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp AGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAATGGGGAATCCGCACCTaGCGTTGGAGGGTGCCTGGT +
Preference number: 4 (lower is better)
Translates to: SPEKHEGYRHRPLPILSQWGIRT*RWRVPG
Trigger: ACCAGGCACCCTCCAACGTCAGGTGCGGATTCCCCA...TTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp CATACACAGGACAGACCCCCAGGCAGGTCAGGTACACTTCTTGAGCTATCACACCCACAGAGGTGCAGCTaGCAAGGCTGGGTGATGTTG +
Preference number: 4 (lower is better)
Translates to: HTQDRPPGRSGTLLELSHPQRCS*QGWVML
Trigger: CAACATCACCCAGCCTTGTCAGCTGCACCTCTGTGG...GTGTGATAGCTCAAGAAGTGTACCTGACCTGCCTGGGGGTCTGTCCTGTGTATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp GCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACTGTCCCGCACTCGGCTaGGCACTTGGAACTCCAGTC +
Preference number: 4 (lower is better)
Translates to: ATGARMSYADVSLFHPRHCPALG*ALGTPV
Trigger: GACTGGAGTTCCAAGTGCTCAGCCGAGTGCGGGACA...GTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp AACATACACAGGACAGACCCCCAGGCAGGTCAGGTACACTTCTTGAGCTATCACGAGGGCATCGGGAGCTaGGAGTCTGGTTGCCACTCA +
Preference number: 4 (lower is better)
Translates to: NIHRTDPQAGQVHFLSYHEGIGS*ESGCHS
Trigger: TGAGTGGCAACCAGACTCTCAGCTCCCGATGCCCTC...GTGATAGCTCAAGAAGTGTACCTGACCTGCCTGGGGGTCTGTCCTGTGTATGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp AGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCTTTTGTGGAAGCTGGAAGGTCTCAGGTaGGGAGGGCATCGGGAGCTG +
Preference number: 4 (lower is better)
Translates to: RDTGTAHFLFFLKLLLWKLEGLR*GGHREL
Trigger: CAGCTCCCGATGCCCTCCTCACCTGAGACCTTCCAG...CTTCCACAAAAGCAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp GGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCTTTTGTGGAAGTGCTGCTCCCTGGGGACTaGTCCAACTTCCCGGGGAAG +
Preference number: 4 (lower is better)
Translates to: GYRHRPLPILSQAAFVEVLLPGD*SNFPGK
Trigger: CTTCCCCGGGAAGTTGGAGCAGTCCCCAGGGAGCAG...CACTTCCACAAAAGCAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp TGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGCTGACTCACGGGAAATaGAGAGGAAAATGGGGTGCC +
Preference number: 4 (lower is better)
Translates to: WRIPLARLRPGEKPEGTELTHGK*RGKWGA
Trigger: GGCACCCCATTTTCCTCTGCATTTCCCGTGAGTCAG...CTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp CCTTTCTCCCCAGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTAGTGGAGAGCTGTCCTTaGATTGGTCATCTGGTCGCT +
Preference number: 4 (lower is better)
Translates to: PFSPAQKSMRDTGTAHFLVESCP*IGHLVA
Trigger: AGCGACCAGATGACCAATGCAAGGACAGCTCTCCAC...TAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCTGGGGAGAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp CAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGAGGCCTTCAGGGACCTaGCCCTCCTCTGATGGCAGC +
Preference number: 4 (lower is better)
Translates to: QKSMRDTGTAHFLFFLKLRPSGT*PSSDGS
Trigger: GCTGCCATCAGAGGAGGGCCAGGTCCCTGAAGGCCT...CAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp TGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGCCCTAGACTGGGGATCCCGTaGAGTCTGGGGTCTGGAGCC +
Preference number: 4 (lower is better)
Translates to: CLMLTFLFFTLDTSGPCPRLGIP*SLGSGA
Trigger: GGCTCCAGACCCCAGACTCCACGGGATCCCCAGTCT...AGGGCAGGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp ATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGCTATAACCGAACATCCCTaGCTTGATGGGGTCTCGAAC +
Preference number: 4 (lower is better)
Translates to: IPLARLRPGEKPEGTERAITEHP*LDGVSN
Trigger: GTTCGAGACCCCATCAAGCCAGGGATGTTCGGTTAT...AGCCCGCTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp CTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTTGCCTCCTGCTCTGCTaGCTCCGGGGGACAGGAGAG +
Preference number: 4 (lower is better)
Translates to: LGLGCLMLTFLFFTLDTSCLLLC*LRGTGE
Trigger: CTCTCCTGTCCCCCGGAGCCAGCAGAGCAGGAGGCA...ACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp CTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCGGGCAGCCAGCCATCTaGGGACCTGTGAGGACCTGG +
Preference number: 4 (lower is better)
Translates to: LGCLMLTFLFFTLDTSGPGQPAI*GPVRTW
Trigger: CCAGGTCCTCACAGGTCCCCAGATGGCTGGCTGCCC...GGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGCCCTGGAGAGGTTGGCCCATGAATTCCTaGGAGTCAAAGGCGGCACAC +
Preference number: 4 (lower is better)
Translates to: ADVSLFHPRHKWSLPWRGWPMNS*ESKAAH
Trigger: GTGTGCCGCCTTTGACTCCCAGGAATTCATGGGCCA...ACCTCTCCAGGGCAGGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGCCCTGGAGAGGTTCCCACTGGTACAGCTaGCCCATGAATTCCTGGGAG +
Preference number: 4 (lower is better)
Translates to: ADVSLFHPRHKWSLPWRGSHWYS*PMNSWE
Trigger: CTCCCAGGAATTCATGGGCCAGCTGTACCAGTGGGA...ACCTCTCCAGGGCAGGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp CTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGCCCTGGACGGGAGCTGAGAGTCTaGTTGCCACTCAGGCACTGG +
Preference number: 4 (lower is better)
Translates to: LMLTFLFFTLDTSGPCPGRELRV*LPLRHW
Trigger: CCAGTGCCTGAGTGGCAACCAGACTCTCAGCTCCCG...TCCAGGGCAGGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp AACATACACAGGACAGACCCCCAGGCAGGTCAGGTACACTTCTTGAGCTATCACGACTGCTCCAGGACATaGGCACAAGAGCGGCAGCAG +
Preference number: 4 (lower is better)
Translates to: NIHRTDPQAGQVHFLSYHDCSRT*AQERQQ
Trigger: CTGCTGCCGCTCTTGTGCCCATGTCCTGGAGCAGTC...GTGATAGCTCAAGAAGTGTACCTGACCTGCCTGGGGGTCTGTCCTGTGTATGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACCAAGCCGGTTCCAGCTaGGACTGCTCCAGGACATGG +
Preference number: 4 (lower is better)
Translates to: ATGARMSYADVSLFHPRHQAGSS*DCSRTW
Trigger: CCATGTCCTGGAGCAGTCCCAGCTGGAACCGGCTTG...GTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp TGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGCCCTGACCTGGCCCTCCTCTaGTGGCAGCTGATGAGAAGG +
Preference number: 4 (lower is better)
Translates to: CLMLTFLFFTLDTSGPCPDLALL*WQLMRR
Trigger: CCTTCTCATCAGCTGCCATCAGAGGAGGGCCAGGTC...AGGGCAGGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp AGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCTTTTGTGGAAGAACCTCTGGGCCCCTTaGGGCTCCTGGGTTTCCTCT +
Preference number: 4 (lower is better)
Translates to: RDTGTAHFLFFLKLLLWKNLWAP*GSWVSS
Trigger: AGAGGAAACCCAGGAGCCTCAAGGGGCCCAGAGGTT...CTTCCACAAAAGCAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp CAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCGAACATCCCTGGCTTaGTGGGGTCTCGAACCCGGA +
Preference number: 4 (lower is better)
Translates to: QKSMRDTGTAHFLFFLKLRTSLA*WGLEPG
Trigger: TCCGGGTTCGAGACCCCATCAAGCCAGGGATGTTCG...CAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp CTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCCCATCTGGGGACCTGTaGGGACCTGGAGGTCTCCAG +
Preference number: 4 (lower is better)
Translates to: LGCLMLTFLFFTLDTSGPPSGDL*GPGGLQ
Trigger: CTGGAGACCTCCAGGTCCTCACAGGTCCCCAGATGG...GGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp GCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACTCTAGGGATCCAGGCTaGCACAGGGTTCCATCCTGC +
Preference number: 4 (lower is better)
Translates to: ATGARMSYADVSLFHPRHSRDPG*HRVPSC
Trigger: GCAGGATGGAACCCTGTGTCAGCCTGGATCCCTAGA...GTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp CTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTCGCAACTGGGAAATGTaGAGGTGGGAGGCCCCGGCA +
Preference number: 4 (lower is better)
Translates to: LGLGCLMLTFLFFTLDTSRNWEM*RWEAPA
Trigger: TGCCGGGGCCTCCCACCTTCACATTTCCCAGTTGCG...ACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp TTTCTCCCCAGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTTTTGCCACAGGATGCTaGACACTCAGAGTGCCCCAC +
Preference number: 4 (lower is better)
Translates to: FLPSPEKHEGYRHRPLPIFATGC*TLRVPH
Trigger: GTGGGGCACTCTGAGTGTTCAGCATCCTGTGGCAAA...AATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCTGGGGAGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp CTTTCTCAAGCTGCTTTTGTGGAAGTGATAAACATACACAGGACAGACCCCCAGGTCTCCAGTGCCTCCTaGTCTGCTGGCTCCGGGGGA +
Preference number: 4 (lower is better)
Translates to: LSQAAFVEVINIHRTDPQVSSAS*SAGSGG
Trigger: TCCCCCGGAGCCAGCAGAGCAGGAGGCACTGGAGAC...CTGGGGGTCTGTCCTGTGTATGTTTATCACTTCCACAAAAGCAGCTTGAGAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp GGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCTTTTGTGGAAGTGCTGAGAGGGCAGCCCTaGTCAGTGCTTCCTGCTTCC +
Preference number: 4 (lower is better)
Translates to: GYRHRPLPILSQAAFVEVLRGQP*SVLPAS
Trigger: GGAAGCAGGAAGCACTGAGCAGGGCTGCCCTCTCAG...CACTTCCACAAAAGCAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCAGGTCAGGTACACTTCTTGAGCTATCACACTGTAGGTCTCTCACCCTGGAGGGGCCAGCTCTGTGCTTaGAGGCTGAGATGGAACCAT +
Preference number: 4 (lower is better)
Translates to: AGQVHFLSYHTVGLSPWRGQLCA*RLRWNH
Trigger: ATGGTTCCATCTCAGCCTCCAAGCACAGAGCTGGCC...CCTCCAGGGTGAGAGACCTACAGTGTGATAGCTCAAGAAGTGTACCTGACCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp CATACACAGGACAGACCCCCAGGCAGGTCAGGTACACTTCTTGAGCTATCACACCTGAGGCTGAAGGGCTaGAGGCTTTGTGGAAGGACT +
Preference number: 4 (lower is better)
Translates to: HTQDRPPGRSGTLLELSHLRLKG*RLCGRT
Trigger: AGTCCTTCCACAAAGCCTCCAGCCCTTCAGCCTCAG...GTGTGATAGCTCAAGAAGTGTACCTGACCTGCCTGGGGGTCTGTCCTGTGTATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp CTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGCCAGCCTCCCAGTATaGAGGACACGGGGGTCCATG +
Preference number: 4 (lower is better)
Translates to: LGLGCLMLTFLFFTLDTSASLPV*RTRGSM
Trigger: CATGGACCCCCGTGTCCTCCATACTGGGAGGCTGGC...ACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp CTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTAGTAGCTGGCGGTGCTaGGTGCCAGGGCCACAGGAT +
Preference number: 4 (lower is better)
Translates to: LGLGCLMLTFLFFTLDTSSSWRC*VPGPQD
Trigger: ATCCTGTGGCCCTGGCACCCAGCACCGCCAGCTACT...ACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp AGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCTTTTGTGGAAGGACTGCTCCAGGACATaGGCACAAGAGCGGCAGCAG +
Preference number: 4 (lower is better)
Translates to: RDTGTAHFLFFLKLLLWKDCSRT*AQERQQ
Trigger: CTGCTGCCGCTCTTGTGCCCATGTCCTGGAGCAGTC...CTTCCACAAAAGCAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp TGGCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACCCTTGGAGTTTCAGCTaGGTGAGAACGGGGTTCAGG +
Preference number: 4 (lower is better)
Translates to: WRLGLGCLMLTFLFFTLDPWSFS*VRTGFR
Trigger: CCTGAACCCCGTTCTCACTCAGCTGAAACTCCAAGG...GTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp GCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACTTTGCCACAGGATGCTaGACACTCAGAGTGCCCCAC +
Preference number: 4 (lower is better)
Translates to: ATGARMSYADVSLFHPRHFATGC*TLRVPH
Trigger: GTGGGGCACTCTGAGTGTTCAGCATCCTGTGGCAAA...GTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp GGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCTTTTGTGGAAGTGTGGGAGAAGTCACATTaGACTCGGCCCCCAGCTTGG +
Preference number: 4 (lower is better)
Translates to: GYRHRPLPILSQAAFVEVWEKSH*TRPPAW
Trigger: CCAAGCTGGGGGCCGAGTTCAATGTGACTTCTCCCA...CACTTCCACAAAAGCAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp GCAGGTCAGGTACACTTCTTGAGCTATCACACTGTAGGTCTCTCACCCTGGAGGTACTGGGAGCAAAGATaGTCCAGAGTGGGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: AGQVHFLSYHTVGLSPWRYWEQR*SRVGWS
Trigger: ACTCCAGCCCACTCTGGAGCATCTTTGCTCCCAGTA...CCTCCAGGGTGAGAGACCTACAGTGTGATAGCTCAAGAAGTGTACCTGACCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp AACATACACAGGACAGACCCCCAGGCAGGTCAGGTACACTTCTTGAGCTATCACCTCCGAATTCCTGTCTaGAGAGTAGCTGGCGGTGCT +
Preference number: 4 (lower is better)
Translates to: NIHRTDPQAGQVHFLSYHLRIPV*RVAGGA
Trigger: AGCACCGCCAGCTACTCTGCAGACAGGAATTCGGAG...GTGATAGCTCAAGAAGTGTACCTGACCTGCCTGGGGGTCTGTCCTGTGTATGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp CTTTCTCAAGCTGCTTTTGTGGAAGTGATAAACATACACAGGACAGACCCCCAGCGTCGCTCTGCTCCCTaGGGACTGCTCCAACTTCCC +
Preference number: 4 (lower is better)
Translates to: LSQAAFVEVINIHRTDPQRRSAP*GLLQLP
Trigger: GGGAAGTTGGAGCAGTCCCCAGGGAGCAGAGCGACG...CTGGGGGTCTGTCCTGTGTATGTTTATCACTTCCACAAAAGCAGCTTGAGAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp CAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGTGCTCCAGAGTGGGCTaGAGTCTCTTGTCAGGGGCA +
Preference number: 4 (lower is better)
Translates to: QKSMRDTGTAHFLFFLKLCSRVG*SLLSGA
Trigger: TGCCCCTGACAAGAGACTCCAGCCCACTCTGGAGCA...CAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCAGGTCAGGTACACTTCTTGAGCTATCACACTGTAGGTCTCTCACCCTGGAGGTTCCCCAGAACAGTTTaGAGCAGGGATACTGGGAGC +
Preference number: 4 (lower is better)
Translates to: AGQVHFLSYHTVGLSPWRFPRTV*SRDTGS
Trigger: GCTCCCAGTATCCCTGCTCCAAACTGTTCTGGGGAA...CCTCCAGGGTGAGAGACCTACAGTGTGATAGCTCAAGAAGTGTACCTGACCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp TGGCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACTGGCCCATGAATTCCTaGGAGTCAAAGGCGGCACAC +
Preference number: 4 (lower is better)
Translates to: WRLGLGCLMLTFLFFTLDWPMNS*ESKAAH
Trigger: GTGTGCCGCCTTTGACTCCCAGGAATTCATGGGCCA...GTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp AACATACACAGGACAGACCCCCAGGCAGGTCAGGTACACTTCTTGAGCTATCACTCCCACTGGTACAGCTaGCCCATGAATTCCTGGGAG +
Preference number: 4 (lower is better)
Translates to: NIHRTDPQAGQVHFLSYHSHWYS*PMNSWE
Trigger: CTCCCAGGAATTCATGGGCCAGCTGTACCAGTGGGA...GTGATAGCTCAAGAAGTGTACCTGACCTGCCTGGGGGTCTGTCCTGTGTATGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACGTGAAGGGCTCCCACTaGTACAGCTGGCCCATGAAT +
Preference number: 4 (lower is better)
Translates to: ATGARMSYADVSLFHPRHVKGSH*YSWPMN
Trigger: ATTCATGGGCCAGCTGTACCAGTGGGAGCCCTTCAC...GTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCAGGTCAGGTACACTTCTTGAGCTATCACACTGTAGGTCTCTCACCCTGGAGGGGAAGACAGTCCCAATaGCTGTATAGGACCCTGGAG +
Preference number: 4 (lower is better)
Translates to: AGQVHFLSYHTVGLSPWRGRQSQ*LYRTLE
Trigger: CTCCAGGGTCCTATACAGCCATTGGGACTGTCTTCC...CCTCCAGGGTGAGAGACCTACAGTGTGATAGCTCAAGAAGTGTACCTGACCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp AACATACACAGGACAGACCCCCAGGCAGGTCAGGTACACTTCTTGAGCTATCACCTGAGGCTGAAGGGCTaGAGGCTTTGTGGAAGGACT +
Preference number: 4 (lower is better)
Translates to: NIHRTDPQAGQVHFLSYHLRLKG*RLCGRT
Trigger: AGTCCTTCCACAAAGCCTCCAGCCCTTCAGCCTCAG...GTGATAGCTCAAGAAGTGTACCTGACCTGCCTGGGGGTCTGTCCTGTGTATGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp AGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAATGTAGAACCAGGCTGTaGTGCAGGGGCCCATGTCAC +
Preference number: 4 (lower is better)
Translates to: SPEKHEGYRHRPLPILSQCRTRL*CRGPCH
Trigger: GTGACATGGGCCCCTGCACCACAGCCTGGTTCTACA...TTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GCAGGTCAGGTACACTTCTTGAGCTATCACACTGTAGGTCTCTCACCCTGGAGGGAGCTGTCCTTGCATTaGTCATCTGGTCGCTGGTTG +
Preference number: 4 (lower is better)
Translates to: AGQVHFLSYHTVGLSPWRELSLH*SSGRWL
Trigger: CAACCAGCGACCAGATGACCAATGCAAGGACAGCTC...CCTCCAGGGTGAGAGACCTACAGTGTGATAGCTCAAGAAGTGTACCTGACCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp CTTTCTCAAGCTGCTTTTGTGGAAGTGATAAACATACACAGGACAGACCCCCAGAACCTCTGGGCCCCTTaGGGCTCCTGGGTTTCCTCT +
Preference number: 4 (lower is better)
Translates to: LSQAAFVEVINIHRTDPQNLWAP*GSWVSS
Trigger: AGAGGAAACCCAGGAGCCTCAAGGGGCCCAGAGGTT...CTGGGGGTCTGTCCTGTGTATGTTTATCACTTCCACAAAAGCAGCTTGAGAAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp AGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCTTTTGTGGAAGGGTACAGCTGGCCCATaGATTCCTGGGAGTCAAAGG +
Preference number: 4 (lower is better)
Translates to: RDTGTAHFLFFLKLLLWKGTAGP*IPGSQR
Trigger: CCTTTGACTCCCAGGAATTCATGGGCCAGCTGTACC...CTTCCACAAAAGCAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp AGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGGTACAGCTGGCCCATaGATTCCTGGGAGTCAAAGG +
Preference number: 4 (lower is better)
Translates to: SPEKHEGYRHRPLPILSQGTAGP*IPGSQR
Trigger: CCTTTGACTCCCAGGAATTCATGGGCCAGCTGTACC...TTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp CTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTCTAGGGATCCAGGCTaGCACAGGGTTCCATCCTGC +
Preference number: 4 (lower is better)
Translates to: LGCLMLTFLFFTLDTSGPSRDPG*HRVPSC
Trigger: GCAGGATGGAACCCTGTGTCAGCCTGGATCCCTAGA...GGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp CATACACAGGACAGACCCCCAGGCAGGTCAGGTACACTTCTTGAGCTATCACACCAGAGGAAAATGGGGTaGCAAACACCTTTGCCACAG +
Preference number: 4 (lower is better)
Translates to: HTQDRPPGRSGTLLELSHQRKMG*QTPLPQ
Trigger: CTGTGGCAAAGGTGTTTGGCACCCCATTTTCCTCTG...GTGTGATAGCTCAAGAAGTGTACCTGACCTGCCTGGGGGTCTGTCCTGTGTATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp GCAGGTCAGGTACACTTCTTGAGCTATCACACTGTAGGTCTCTCACCCTGGAGGCAGAGGAAAATGGGGTaGCAAACACCTTTGCCACAG +
Preference number: 4 (lower is better)
Translates to: AGQVHFLSYHTVGLSPWRQRKMG*QTPLPQ
Trigger: CTGTGGCAAAGGTGTTTGGCACCCCATTTTCCTCTG...CCTCCAGGGTGAGAGACCTACAGTGTGATAGCTCAAGAAGTGTACCTGACCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp GCAGGTCAGGTACACTTCTTGAGCTATCACACTGTAGGTCTCTCACCCTGGAGGCCTCATCACCATTACTaGCAACACACCGAACTTGCC +
Preference number: 4 (lower is better)
Translates to: AGQVHFLSYHTVGLSPWRPHHHY*QHTELA
Trigger: GGCAAGTTCGGTGTGTTGGCAGTAATGGTGATGAGG...CCTCCAGGGTGAGAGACCTACAGTGTGATAGCTCAAGAAGTGTACCTGACCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp TGGCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACCCTGAAGCACACTCCTaGTTGTCCACCTCATCACCA +
Preference number: 4 (lower is better)
Translates to: WRLGLGCLMLTFLFFTLDPEAHS*LSTSSP
Trigger: TGGTGATGAGGTGGACAAGCAGGAGTGTGCTTCAGG...GTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp CTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGGACTTCCCTCGTCTaGATGCCTCCCTGGCAGGAT +
Preference number: 4 (lower is better)
Translates to: LGCLMLTFLFFTLDTSGPWTSLV*MPPWQD
Trigger: ATCCTGCCAGGGAGGCATGCAGACGAGGGAAGTCCA...GGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp CTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTTGGACTTCCCTCGTCTaGATGCCTCCCTGGCAGGAT +
Preference number: 4 (lower is better)
Translates to: LGLGCLMLTFLFFTLDTSWTSLV*MPPWQD
Trigger: ATCCTGCCAGGGAGGCATGCAGACGAGGGAAGTCCA...ACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp CTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGCCCTGGAGTGGAGAGCTGTCCTTaGATTGGTCATCTGGTCGCT +
Preference number: 4 (lower is better)
Translates to: LMLTFLFFTLDTSGPCPGVESCP*IGHLVA
Trigger: AGCGACCAGATGACCAATGCAAGGACAGCTCTCCAC...TCCAGGGCAGGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp AGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCTTTTGTGGAAGGTGAAGGGCTCCCACTaGTACAGCTGGCCCATGAAT +
Preference number: 4 (lower is better)
Translates to: RDTGTAHFLFFLKLLLWKVKGSH*YSWPMN
Trigger: ATTCATGGGCCAGCTGTACCAGTGGGAGCCCTTCAC...CTTCCACAAAAGCAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp CTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTCTGTGCTTGGAGGCTaGGATGGAACCATCCCTTCC +
Preference number: 4 (lower is better)
Translates to: LGCLMLTFLFFTLDTSGPSVLGG*DGTIPS
Trigger: GGAAGGGATGGTTCCATCTCAGCCTCCAAGCACAGA...GGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp CTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCCAGAGGCCAGCTCTGTaGTTGGAGGCTGAGATGGAA +
Preference number: 4 (lower is better)
Translates to: LGCLMLTFLFFTLDTSGPQRPAL*LEAEME
Trigger: TTCCATCTCAGCCTCCAAGCACAGAGCTGGCCTCTG...GGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp CAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGAAAAGAGGAGGTAGGTaGAGGGGTCCCTGTGTAGGA +
Preference number: 4 (lower is better)
Translates to: QKSMRDTGTAHFLFFLKLKRGGR*RGPCVG
Trigger: TCCTACACAGGGACCCCTGCACCTACCTCCTCTTTT...CAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp AGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAACACAGGGTTCCATCCTaGACCTTTTCAGTGTGTCGG +
Preference number: 4 (lower is better)
Translates to: SPEKHEGYRHRPLPILSQHRVPS*TFSVCR
Trigger: CCGACACACTGAAAAGGTGCAGGATGGAACCCTGTG...TTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp CTTTCTCAAGCTGCTTTTGTGGAAGTGATAAACATACACAGGACAGACCCCCAGACAGACTCTCCCCCTTaGCTTCTTCCCGTGGAGGAC +
Preference number: 4 (lower is better)
Translates to: LSQAAFVEVINIHRTDPQTDSPP*LLPVED
Trigger: GTCCTCCACGGGAAGAAGGCAAGGGGGAGAGTCTGT...CTGGGGGTCTGTCCTGTGTATGTTTATCACTTCCACAAAAGCAGCTTGAGAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp CATACACAGGACAGACCCCCAGGCAGGTCAGGTACACTTCTTGAGCTATCACACGCTGAACACTCAGAGTaGCCCACTTGTTTCCAGTAT +
Preference number: 4 (lower is better)
Translates to: HTQDRPPGRSGTLLELSHAEHSE*PTCFQY
Trigger: ATACTGGAAACAAGTGGGGCACTCTGAGTGTTCAGC...GTGTGATAGCTCAAGAAGTGTACCTGACCTGCCTGGGGGTCTGTCCTGTGTATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp AGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCTTTTGTGGAAGCTGACTCACGGGAAATaGAGAGGAAAATGGGGTGCC +
Preference number: 4 (lower is better)
Translates to: RDTGTAHFLFFLKLLLWKLTHGK*RGKWGA
Trigger: GGCACCCCATTTTCCTCTGCATTTCCCGTGAGTCAG...CTTCCACAAAAGCAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp CCTATTCTTTCTCAAGCTGCTTTTGTGGAAGTGATAAACATACACAGGACAGACCAGAGTAGCTGGCGGTaGTGGGTGCCAGGGCCACAG +
Preference number: 4 (lower is better)
Translates to: PILSQAAFVEVINIHRTDQSSWR*WVPGPQ
Trigger: CTGTGGCCCTGGCACCCAGCACCGCCAGCTACTCTG...GTCTGTCCTGTGTATGTTTATCACTTCCACAAAAGCAGCTTGAGAAAGAATAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp CTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGCCCTGGACCTCATCACCATTACTaGCAACACACCGAACTTGCC +
Preference number: 4 (lower is better)
Translates to: LMLTFLFFTLDTSGPCPGPHHHY*QHTELA
Trigger: GGCAAGTTCGGTGTGTTGGCAGTAATGGTGATGAGG...TCCAGGGCAGGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp GGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCTTTTGTGGAAGTGCCTGAAGCACACTCCTaGTTGTCCACCTCATCACCA +
Preference number: 4 (lower is better)
Translates to: GYRHRPLPILSQAAFVEVPEAHS*LSTSSP
Trigger: TGGTGATGAGGTGGACAAGCAGGAGTGTGCTTCAGG...CACTTCCACAAAAGCAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp TCTTTCTCAAGCTGCTTTTGTGGAAGTGATAAACATACACAGGACAGACCCCCACTTCCCTCGTCTGCATaGCTCCCTGGCAGGATCGAG +
Preference number: 4 (lower is better)
Translates to: SFSSCFCGSDKHTQDRPPLPSSA*LPGRIE
Trigger: CTCGATCCTGCCAGGGAGGCATGCAGACGAGGGAAG...TGGGGGTCTGTCCTGTGTATGTTTATCACTTCCACAAAAGCAGCTTGAGAAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp CTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCGGCCCAAGGGATCCCTaGAAAGACCTACTGTCTCCA +
Preference number: 4 (lower is better)
Translates to: LGCLMLTFLFFTLDTSGPGPRDP*KDLLSP
Trigger: TGGAGACAGTAGGTCTTTCCAGGGATCCCTTGGGCC...GGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp TCTTTCTCAAGCTGCTTTTGTGGAAGTGATAAACATACACAGGACAGACCCCCAGGACCTGTGAGGACCTaGAGGTCTCCAGTGCCTCCT +
Preference number: 4 (lower is better)
Translates to: SFSSCFCGSDKHTQDRPPGPVRT*RSPVPP
Trigger: AGGAGGCACTGGAGACCTCCAGGTCCTCACAGGTCC...TGGGGGTCTGTCCTGTGTATGTTTATCACTTCCACAAAAGCAGCTTGAGAAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp AGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGGAAGACAGTCCCAATaGCTGTATAGGACCCTGGAG +
Preference number: 4 (lower is better)
Translates to: SPEKHEGYRHRPLPILSQGRQSQ*LYRTLE
Trigger: CTCCAGGGTCCTATACAGCCATTGGGACTGTCTTCC...TTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp CTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTCACAGGGTTCCATCCTaGACCTTTTCAGTGTGTCGG +
Preference number: 4 (lower is better)
Translates to: LGLGCLMLTFLFFTLDTSHRVPS*TFSVCR
Trigger: CCGACACACTGAAAAGGTGCAGGATGGAACCCTGTG...ACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp TGGCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACGCTGAACACTCAGAGTaGCCCACTTGTTTCCAGTAT +
Preference number: 4 (lower is better)
Translates to: WRLGLGCLMLTFLFFTLDAEHSE*PTCFQY
Trigger: ATACTGGAAACAAGTGGGGCACTCTGAGTGTTCAGC...GTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp AGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGGTGCCAAACACCTTTaGCACAGGATGCTGAACACT +
Preference number: 4 (lower is better)
Translates to: SPEKHEGYRHRPLPILSQGAKHL*HRMLNT
Trigger: AGTGTTCAGCATCCTGTGGCAAAGGTGTTTGGCACC...TTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCTTTTGTGGAAGTGATAACCGAACATCCCTaGCTTGATGGGGTCTCGAAC +
Preference number: 4 (lower is better)
Translates to: GYRHRPLPILSQAAFVEVITEHP*LDGVSN
Trigger: GTTCGAGACCCCATCAAGCCAGGGATGTTCGGTTAT...CACTTCCACAAAAGCAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp GGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCTTTTGTGGAAGTGAAAGATGCTCCAGAGTaGGCTGGAGTCTCTTGTCAG +
Preference number: 4 (lower is better)
Translates to: GYRHRPLPILSQAAFVEVKDAPE*AGVSCQ
Trigger: CTGACAAGAGACTCCAGCCCACTCTGGAGCATCTTT...CACTTCCACAAAAGCAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp AGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCTTTTGTGGAAGAAAGATGCTCCAGAGTaGGCTGGAGTCTCTTGTCAG +
Preference number: 4 (lower is better)
Translates to: RDTGTAHFLFFLKLLLWKKDAPE*AGVSCQ
Trigger: CTGACAAGAGACTCCAGCCCACTCTGGAGCATCTTT...CTTCCACAAAAGCAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp CTTTCTCAAGCTGCTTTTGTGGAAGTGATAAACATACACAGGACAGACCCCCAGGGAGTGCGAGGTAATTaGAACTGGGTCGCAACTGGG +
Preference number: 4 (lower is better)
Translates to: LSQAAFVEVINIHRTDPQGVRGN*NWVATG
Trigger: CCCAGTTGCGACCCAGTTCCAATTACCTCGCACTCC...CTGGGGGTCTGTCCTGTGTATGTTTATCACTTCCACAAAAGCAGCTTGAGAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp CTTTCTCAAGCTGCTTTTGTGGAAGTGATAAACATACACAGGACAGACCCCCAGGGGCTGGAGGCTTTGTaGAAGGACTCTCTAGGACTG +
Preference number: 4 (lower is better)
Translates to: LSQAAFVEVINIHRTDPQGLEAL*KDSLGL
Trigger: CAGTCCTAGAGAGTCCTTCCACAAAGCCTCCAGCCC...CTGGGGGTCTGTCCTGTGTATGTTTATCACTTCCACAAAAGCAGCTTGAGAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp TCTTTCTCAAGCTGCTTTTGTGGAAGTGATAAACATACACAGGACAGACCCCCACAGAGGCCAGCTCTGTaGTTGGAGGCTGAGATGGAA +
Preference number: 4 (lower is better)
Translates to: SFSSCFCGSDKHTQDRPPQRPAL*LEAEME
Trigger: TTCCATCTCAGCCTCCAAGCACAGAGCTGGCCTCTG...TGGGGGTCTGTCCTGTGTATGTTTATCACTTCCACAAAAGCAGCTTGAGAAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp TCTTTCTCAAGCTGCTTTTGTGGAAGTGATAAACATACACAGGACAGACCCCCAGGCCAGCTCTGTGCTTaGAGGCTGAGATGGAACCAT +
Preference number: 4 (lower is better)
Translates to: SFSSCFCGSDKHTQDRPPGQLCA*RLRWNH
Trigger: ATGGTTCCATCTCAGCCTCCAAGCACAGAGCTGGCC...TGGGGGTCTGTCCTGTGTATGTTTATCACTTCCACAAAAGCAGCTTGAGAAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp TCTTTCTCAAGCTGCTTTTGTGGAAGTGATAAACATACACAGGACAGACCCCCAGGGCTGGAGGCTTTGTaGAAGGACTCTCTAGGACTG +
Preference number: 4 (lower is better)
Translates to: SFSSCFCGSDKHTQDRPPGLEAL*KDSLGL
Trigger: CAGTCCTAGAGAGTCCTTCCACAAAGCCTCCAGCCC...TGGGGGTCTGTCCTGTGTATGTTTATCACTTCCACAAAAGCAGCTTGAGAAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR TCA 90 bp CCTATTCTTTCTCAAGCTGCTTTTGTGGAAGTGATAAACATACACAGGACAGACCCACAGAGGTGCAGCTaGCAAGGCTGGGTGATGTTG +
Preference number: 4 (lower is better)
Translates to: PILSQAAFVEVINIHRTDPQRCS*QGWVML
Trigger: CAACATCACCCAGCCTTGTCAGCTGCACCTCTGTGG...GTCTGTCCTGTGTATGTTTATCACTTCCACAAAAGCAGCTTGAGAAAGAATAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR GCA 90 bp TCTTTCTCAAGCTGCTTTTGTGGAAGTGATAAACATACACAGGACAGACCCCCAAAAAGAGGAGGTAGGTaGAGGGGTCCCTGTGTAGGA +
Preference number: 4 (lower is better)
Translates to: SFSSCFCGSDKHTQDRPPKRGGR*RGPCVG
Trigger: TCCTACACAGGGACCCCTGCACCTACCTCCTCTTTT...TGGGGGTCTGTCCTGTGTATGTTTATCACTTCCACAAAAGCAGCTTGAGAAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CCA 90 bp CCTATTCTTTCTCAAGCTGCTTTTGTGGAAGTGATAAACATACACAGGACAGACGGCTGTATAGGACCCTaGAGGATCCACAGCCCAGTT +
Preference number: 4 (lower is better)
Translates to: PILSQAAFVEVINIHRTDGCIGP*RIHSPV
Trigger: AACTGGGCTGTGGATCCTCCAGGGTCCTATACAGCC...GTCTGTCCTGTGTATGTTTATCACTTCCACAAAAGCAGCTTGAGAAAGAATAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 90 bp GTGCCTCCTGCTCTGCTGGCTCCGGGGGACAGGAGAGAAAGGAGGTaGGTGTCGTCGCTCTGCTCCCTGGGGACTGCTCCAACTTCCCGG +
Preference number: 5 (lower is better)
Translates to: VPPALLAPGDRRERR*VSSLCSLGTAPTSR
Trigger: CCGGGAAGTTGGAGCAGTCCCCAGGGAGCAGAGCGACGACACCCACCTCCTTTCTCTCCTGTCCCCCGGAGCCAGCAGAGCAGGAGGCAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 90 bp CGGGGGACAGGAGAGAAAGGAGGTGGGTGTCGTCGCTCTGCTCCCTaGGGACTGCTCCAACTTCCCGGGGAAGGTGGCATTCGTGGCCCA +
Preference number: 5 (lower is better)
Translates to: RGTGEKGGGCRRSAP*GLLQLPGEGGIRGP
Trigger: TGGGCCACGAATGCCACCTTCCCCGGGAAGTTGGAGCAGTCCCCAGGGAGCAGAGCGACGACACCCACCTCCTTTCTCTCCTGTCCCCCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 90 bp TGGCTCCAGGGGGAGCTAATCTCCCAGTGGCCACAGAGGTGCAGCTaGCAAGGCTGGGTGATGTTGGGCCGGGGGAGATGTCCACAGCGC +
Preference number: 5 (lower is better)
Translates to: WLQGELISQWPQRCS*QGWVMLGRGRCPQR
Trigger: GCGCTGTGGACATCTCCCCCGGCCCAACATCACCCAGCCTTGTCAGCTGCACCTCTGTGGCCACTGGGAGATTAGCTCCCCCTGGAGCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 90 bp CTGAGAGGGCAGCCCTGCTCAGTGCTTCCTGCTTCCGGGTCTCCCTaGAGGGTCTCCCCACTCCTAAGGCAGACCACAGCGCGTCTCTGG +
Preference number: 5 (lower is better)
Translates to: LRGQPCSVLPASGSP*RVSPLLRQTTARLW
Trigger: CCAGAGACGCGCTGTGGTCTGCCTTAGGAGTGGGGAGACCCTTCAGGGAGACCCGGAAGCAGGAAGCACTGAGCAGGGCTGCCCTCTCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 90 bp CACAGGGCCCTAAACTGCAGGCACGCATATCGGGAGGGCGGCTTCTaGGAGGGCAGCCCTGCTCAGTGCTTCCTGCTTCCGGGTCTCCCT +
Preference number: 5 (lower is better)
Translates to: HRALNCRHAYREGGF*EGSPAQCFLLPGLP
Trigger: AGGGAGACCCGGAAGCAGGAAGCACTGAGCAGGGCTGCCCTCTCAGAAGCCGCCCTCCCGATATGCGTGCCTGCAGTTTAGGGCCCTGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS GCA 90 bp AGCCATCTGGGGACCTGTGAGGACCTGGAGGTCTCCAGTGCCTCCTaGTCTGCTGGCTCCGGGGGACAGGAGAGAAAGGAGGTGGGTGTC +
Preference number: 5 (lower is better)
Translates to: SHLGTCEDLEVSSAS*SAGSGGQERKEVGV
Trigger: GACACCCACCTCCTTTCTCTCCTGTCCCCCGGAGCCAGCAGAGCAGGAGGCACTGGAGACCTCCAGGTCCTCACAGGTCCCCAGATGGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS GCA 90 bp CACCACCTCCGAATTCCTGTCTGCAGAGTAGCTGGCGGTGCTGGGTaGCAGGGCCACAGGATCGGCTGCAGGATGTCCACTCGCCAGCCT +
Preference number: 5 (lower is better)
Translates to: HHLRIPVCRVAGGAG*QGHRIGCRMSTRQP
Trigger: AGGCTGGCGAGTGGACATCCTGCAGCCGATCCTGTGGCCCTGGCACCCAGCACCGCCAGCTACTCTGCAGACAGGAATTCGGAGGTGGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS GCA 90 bp GAGGAGCCACCACCTCCGAATTCCTGTCTGCAGAGTAGCTGGCGGTaGTGGGTGCCAGGGCCACAGGATCGGCTGCAGGATGTCCACTCG +
Preference number: 5 (lower is better)
Translates to: EEPPPPNSCLQSSWR*WVPGPQDRLQDVHS
Trigger: CGAGTGGACATCCTGCAGCCGATCCTGTGGCCCTGGCACCCAGCACCGCCAGCTACTCTGCAGACAGGAATTCGGAGGTGGTGGCTCCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 90 bp GCTCCAGAGTGGGCTGGAGTCTCTTGTCAGGGGCAGCCAGCCATCTaGGGACCTGTGAGGACCTGGAGGTCTCCAGTGCCTCCTGCTCTG +
Preference number: 5 (lower is better)
Translates to: APEWAGVSCQGQPAI*GPVRTWRSPVPPAL
Trigger: CAGAGCAGGAGGCACTGGAGACCTCCAGGTCCTCACAGGTCCCCAGATGGCTGGCTGCCCCTGACAAGAGACTCCAGCCCACTCTGGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 90 bp GTAGGGGTAGACGCAGAGCCGGGCCTGTACCACCAGGGGGCAGTGTaGAGAGCTGTCCTTGCATTGGTCATCTGGTCGCTGGTTGCAGGG +
Preference number: 5 (lower is better)
Translates to: VGVDAEPGLYHQGAV*RAVLALVIWSLVAG
Trigger: CCCTGCAACCAGCGACCAGATGACCAATGCAAGGACAGCTCTCCACACTGCCCCCTGGTGGTACAGGCCCGGCTCTGCGTCTACCCCTAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 90 bp GTGTGCCAGACCCACACTCCGAGGAACACTCACTCCAGGGGCCTGTaGACCAGCGCCATGTCCTCTCACAGGGCCCTAAACTGCAGGCAC +
Preference number: 5 (lower is better)
Translates to: VCQTHTPRNTHSRGL*TSAMSSHRALNCRH
Trigger: GTGCCTGCAGTTTAGGGCCCTGTGAGAGGACATGGCGCTGGTTCACAGGCCCCTGGAGTGAGTGTTCCTCGGAGTGTGGGTCTGGCACAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 90 bp AGGGCCGCTTCCTGGAAGGTCTCAGGTGAGGAGGGCATCGGGAGCTaGGAGTCTGGTTGCCACTCAGGCACTGGACTTCCCTCGTCTGCA +
Preference number: 5 (lower is better)
Translates to: RAASWKVSGEEGIGS*ESGCHSGTGLPSSA
Trigger: TGCAGACGAGGGAAGTCCAGTGCCTGAGTGGCAACCAGACTCTCAGCTCCCGATGCCCTCCTCACCTGAGACCTTCCAGGAAGCGGCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 90 bp TTGCAGGGTTGGCTGTTGCAGGGCCGCTTCCTGGAAGGTCTCAGGTaGGGAGGGCATCGGGAGCTGAGAGTCTGGTTGCCACTCAGGCAC +
Preference number: 5 (lower is better)
Translates to: LQGWLLQGRFLEGLR*GGHRELRVWLPLRH
Trigger: GTGCCTGAGTGGCAACCAGACTCTCAGCTCCCGATGCCCTCCTCACCTGAGACCTTCCAGGAAGCGGCCCTGCAACAGCCAACCCTGCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 90 bp TCGTCGCTCTGCTCCCTGGGGACTGCTCCAACTTCCCGGGGAAGGTaGCATTCGTGGCCCAAGGGATCCCTGGAAAGACCTACTGTCTCC +
Preference number: 5 (lower is better)
Translates to: SSLCSLGTAPTSRGR*HSWPKGSLERPTVS
Trigger: GGAGACAGTAGGTCTTTCCAGGGATCCCTTGGGCCACGAATGCCACCTTCCCCGGGAAGTTGGAGCAGTCCCCAGGGAGCAGAGCGACGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 90 bp ACTTCGGTGAAGGGCTCCCACTGGTACAGCTGGCCCATGAATTCCTaGGAGTCAAAGGCGGCACACTGTAGGGCCCTGGGGTCTGGCTGC +
Preference number: 5 (lower is better)
Translates to: TSVKGSHWYSWPMNS*ESKAAHCRALGSGC
Trigger: GCAGCCAGACCCCAGGGCCCTACAGTGTGCCGCCTTTGACTCCCAGGAATTCATGGGCCAGCTGTACCAGTGGGAGCCCTTCACCGAAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 90 bp ACAAGGCTGGGTGATGTTGGGCCGGGGGAGATGTCCACAGCGCTCTaGAGGTACCGAGGAGCCACCACCTCCGAATTCCTGTCTGCAGAG +
Preference number: 5 (lower is better)
Translates to: TRLGDVGPGEMSTAL*RYRGATTSEFLSAE
Trigger: CTCTGCAGACAGGAATTCGGAGGTGGTGGCTCCTCGGTACCTCCAGAGCGCTGTGGACATCTCCCCCGGCCCAACATCACCCAGCCTTGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp TCACCCTGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTAATCCGCACCTGACGTaGGAGGGTGCCTGGTGCCCG +
Preference number: 5 (lower is better)
Translates to: SPWRIPLARLRPGEKPEGNPHLT*EGAWCP
Trigger: CGGGCACCAGGCACCCTCCAACGTCAGGTGCGGATT...ACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCAGGGTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS GCA 90 bp TGTCCTTGCATTGGTCATCTGGTCGCTGGTTGCAGGGTTGGCTGTTaGAGGGCCGCTTCCTGGAAGGTCTCAGGTGAGGAGGGCATCGGG +
Preference number: 5 (lower is better)
Translates to: CPCIGHLVAGCRVGC*RAASWKVSGEEGIG
Trigger: CCCGATGCCCTCCTCACCTGAGACCTTCCAGGAAGCGGCCCTGCAACAGCCAACCCTGCAACCAGCGACCAGATGACCAATGCAAGGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp TCACACTGTAGGTCTCTCACCCTGGAGGATCCCTCTGGCAAGGCTGAGACCAGGCAAGGCTGGGTGATGTaGGGCCGGGGGAGATGTCCA +
Preference number: 5 (lower is better)
Translates to: SHCRSLTLEDPSGKAETRQGWVM*GRGRCP
Trigger: TGGACATCTCCCCCGGCCCAACATCACCCAGCCTTG...CCTGGTCTCAGCCTTGCCAGAGGGATCCTCCAGGGTGAGAGACCTACAGTGTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 90 bp ACCTCATCACCATTACTGCCAACACACCGAACTTGCCGGCTCCTCTaGCCACGACCACAGCGCACAGAGCACTGGCTCCAGGGGGAGCTA +
Preference number: 5 (lower is better)
Translates to: TSSPLLPTHRTCRLL*PRPQRTEHWLQGEL
Trigger: TAGCTCCCCCTGGAGCCAGTGCTCTGTGCGCTGTGGTCGTGGTCAGAGGAGCCGGCAAGTTCGGTGTGTTGGCAGTAATGGTGATGAGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS GCA 90 bp GGGGCCCTGAAGCACACTCCTGCTTGTCCACCTCATCACCATTACTaGCAACACACCGAACTTGCCGGCTCCTCTGACCACGACCACAGC +
Preference number: 5 (lower is better)
Translates to: GALKHTPACPPHHHY*QHTELAGSSDHDHS
Trigger: GCTGTGGTCGTGGTCAGAGGAGCCGGCAAGTTCGGTGTGTTGGCAGTAATGGTGATGAGGTGGACAAGCAGGAGTGTGCTTCAGGGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS GCA 90 bp GAGCTGAGAGTCTGGTTGCCACTCAGGCACTGGACTTCCCTCGTCTaGATGCCTCCCTGGCAGGATCGAGAACACGGACTCCAGAGAGTG +
Preference number: 5 (lower is better)
Translates to: ELRVWLPLRHWTSLV*MPPWQDREHGLQRV
Trigger: CACTCTCTGGAGTCCGTGTTCTCGATCCTGCCAGGGAGGCATGCAGACGAGGGAAGTCCAGTGCCTGAGTGGCAACCAGACTCTCAGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp AGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGCTAGTCAGTGGGTGGCACAAGAACCTCTGGGCCCCTaGAGGCTCCTGGGTTTCCTC +
Preference number: 5 (lower is better)
Translates to: RPGEKPEGTERASQWVAQEPLGP*RLLGFL
Trigger: GAGGAAACCCAGGAGCCTCAAGGGGCCCAGAGGTTC...TTGTGCCACCCACTGACTAGCCCGCTCTGTACCCTCTGGCTTTTCACCTGGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp GCTAGTCAGTGGGTGGCACAAGAAAACCACGAAGGCAGGGTCTCTGGGACCCGTGACAGACTCTCCCCCTaGCCTTCTTCCCGTGGAGGA +
Preference number: 5 (lower is better)
Translates to: ASQWVAQENHEGRVSGTRDRLSP*PSSRGG
Trigger: TCCTCCACGGGAAGAAGGCAAGGGGGAGAGTCTGTC...ACGGGTCCCAGAGACCCTGCCTTCGTGGTTTTCTTGTGCCACCCACTGACTAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp GCTAGTCAGTGGGTGGCACAAGAAAACCACGAAGGCAGGGTCTCTGGGACCCGTTTGCAGGGTTGGCTGTaGCAGGGCCGCTTCCTGGAA +
Preference number: 5 (lower is better)
Translates to: ASQWVAQENHEGRVSGTRLQGWL*QGRFLE
Trigger: TTCCAGGAAGCGGCCCTGCAACAGCCAACCCTGCAA...ACGGGTCCCAGAGACCCTGCCTTCGTGGTTTTCTTGTGCCACCCACTGACTAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 90 bp AAGGCAGACCACAGCGCGTCTCTGGATTCCTGTCCCGCACTCGGCTaGGCACTTGGAACTCCAGTCACTGTAGAACCAGGCTGTGGTGCA +
Preference number: 5 (lower is better)
Translates to: KADHSASLDSCPALG*ALGTPVTVEPGCGA
Trigger: TGCACCACAGCCTGGTTCTACAGTGACTGGAGTTCCAAGTGCTCAGCCGAGTGCGGGACAGGAATCCAGAGACGCGCTGTGGTCTGCCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 90 bp AGGGCCGTGCTTTTCAGAGGCCAGCTCTGTGCTTGGAGGCTGAGATaGAACCATCCCTTCCCCTGTAGAAGAGTTCTTGGGTTGCCCGGG +
Preference number: 5 (lower is better)
Translates to: RAVLFRGQLCAWRLR*NHPFPCRRVLGLPG
Trigger: CCCGGGCAACCCAAGAACTCTTCTACAGGGGAAGGGATGGTTCCATCTCAGCCTCCAAGCACAGAGCTGGCCTCTGAAAAGCACGGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 90 bp AGTTTGGAGCAGGGATACTGGGAGCAAAGATGCTCCAGAGTGGGCTaGAGTCTCTTGTCAGGGGCAGCCAGCCATCTGGGGACCTGTGAG +
Preference number: 5 (lower is better)
Translates to: SLEQGYWEQRCSRVG*SLLSGAASHLGTCE
Trigger: CTCACAGGTCCCCAGATGGCTGGCTGCCCCTGACAAGAGACTCCAGCCCACTCTGGAGCATCTTTGCTCCCAGTATCCCTGCTCCAAACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp AGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGCTAGTCAGTGGGTGAGGCCAGCTCTGTGCTaGGAGGCTGAGATGGAACCA +
Preference number: 5 (lower is better)
Translates to: RLRPGEKPEGTERASQWVRPALC*EAEMEP
Trigger: TGGTTCCATCTCAGCCTCCAAGCACAGAGCTGGCCT...CACCCACTGACTAGCCCGCTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp GCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGCCCTGGAGAGGTCAAGGCTGGGTGATGTaGGGCCGGGGGAGATGTCCA +
Preference number: 5 (lower is better)
Translates to: ADVSLFHPRHKWSLPWRGQGWVM*GRGRCP
Trigger: TGGACATCTCCCCCGGCCCAACATCACCCAGCCTTG...ACCTCTCCAGGGCAGGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp TCACCCTGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTCTGGGAGAAGTCACATaGAACTCGGCCCCCAGCTTG +
Preference number: 5 (lower is better)
Translates to: SPWRIPLARLRPGEKPEGLGEVT*NSAPSL
Trigger: CAAGCTGGGGGCCGAGTTCAATGTGACTTCTCCCAG...ACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCAGGGTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp GCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGCCCTGGAGAGGTGACAGACTCTCCCCCTaGCCTTCTTCCCGTGGAGGA +
Preference number: 5 (lower is better)
Translates to: ADVSLFHPRHKWSLPWRGDRLSP*PSSRGG
Trigger: TCCTCCACGGGAAGAAGGCAAGGGGGAGAGTCTGTC...ACCTCTCCAGGGCAGGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp TCACACTGTAGGTCTCTCACCCTGGAGGATCCCTCTGGCAAGGCTGAGACCAGGGAAGGGCTGGAGGCTTaGTGGAAGGACTCTCTAGGA +
Preference number: 5 (lower is better)
Translates to: SHCRSLTLEDPSGKAETREGLEA*WKDSLG
Trigger: TCCTAGAGAGTCCTTCCACAAAGCCTCCAGCCCTTC...CCTGGTCTCAGCCTTGCCAGAGGGATCCTCCAGGGTGAGAGACCTACAGTGTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp GCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAATCCGCACCTGACGTaGGAGGGTGCCTGGTGCCCG +
Preference number: 5 (lower is better)
Translates to: ATGARMSYADVSLFHPRHNPHLT*EGAWCP
Trigger: CGGGCACCAGGCACCCTCCAACGTCAGGTGCGGATT...GTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS GCA 90 bp CACTTTCCCCAGAACAGTTTGGAGCAGGGATACTGGGAGCAAAGATaGTCCAGAGTGGGCTGGAGTCTCTTGTCAGGGGCAGCCAGCCAT +
Preference number: 5 (lower is better)
Translates to: HFPQNSLEQGYWEQR*SRVGWSLLSGAASH
Trigger: ATGGCTGGCTGCCCCTGACAAGAGACTCCAGCCCACTCTGGAGCATCTTTGCTCCCAGTATCCCTGCTCCAAACTGTTCTGGGGAAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 90 bp GGGCTGCATGTGAGGGCCGTGCTTTTCAGAGGCCAGCTCTGTGCTTaGAGGCTGAGATGGAACCATCCCTTCCCCTGTAGAAGAGTTCTT +
Preference number: 5 (lower is better)
Translates to: GLHVRAVLFRGQLCA*RLRWNHPFPCRRVL
Trigger: AAGAACTCTTCTACAGGGGAAGGGATGGTTCCATCTCAGCCTCCAAGCACAGAGCTGGCCTCTGAAAAGCACGGCCCTCACATGCAGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 90 bp CTCCTGGCTGCAGGCTCGCATCTGTTCACTTTCCCCAGAACAGTTTaGAGCAGGGATACTGGGAGCAAAGATGCTCCAGAGTGGGCTGGA +
Preference number: 5 (lower is better)
Translates to: LLAAGSHLFTFPRTV*SRDTGSKDAPEWAG
Trigger: TCCAGCCCACTCTGGAGCATCTTTGCTCCCAGTATCCCTGCTCCAAACTGTTCTGGGGAAAGTGAACAGATGCGAGCCTGCAGCCAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp GCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACGAACCTCTGGGCCCCTaGAGGCTCCTGGGTTTCCTC +
Preference number: 5 (lower is better)
Translates to: ATGARMSYADVSLFHPRHEPLGP*RLLGFL
Trigger: GAGGAAACCCAGGAGCCTCAAGGGGCCCAGAGGTTC...GTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp AACATACACAGGACAGACCCCCAGGCAGGTCAGGTACACTTCTTGAGCTATCACCCGAACATCCCTGGCTaGATGGGGTCTCGAACCCGG +
Preference number: 5 (lower is better)
Translates to: NIHRTDPQAGQVHFLSYHPNIPG*MGSRTR
Trigger: CCGGGTTCGAGACCCCATCAAGCCAGGGATGTTCGG...GTGATAGCTCAAGAAGTGTACCTGACCTGCCTGGGGGTCTGTCCTGTGTATGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp GCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGCCCTGGAGAGGTAGGCCAGCTCTGTGCTaGGAGGCTGAGATGGAACCA +
Preference number: 5 (lower is better)
Translates to: ADVSLFHPRHKWSLPWRGRPALC*EAEMEP
Trigger: TGGTTCCATCTCAGCCTCCAAGCACAGAGCTGGCCT...ACCTCTCCAGGGCAGGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp GCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAGTCGGAGGAGGCACTaGGGGAATCCGCACCTGACG +
Preference number: 5 (lower is better)
Translates to: ATGARMSYADVSLFHPRHSRRRH*GNPHLT
Trigger: CGTCAGGTGCGGATTCCCCAAGTGCCTCCTCCGACT...GTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp TCACACTGTAGGTCTCTCACCCTGGAGGATCCCTCTGGCAAGGCTGAGACCAGGGGTAGGTGGGAACAGTaGCTGGGAGAAGTCACATTG +
Preference number: 5 (lower is better)
Translates to: SHCRSLTLEDPSGKAETRGRWEQ*LGEVTL
Trigger: CAATGTGACTTCTCCCAGCAACTGTTCCCACCTACC...CCTGGTCTCAGCCTTGCCAGAGGGATCCTCCAGGGTGAGAGACCTACAGTGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp AGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGCTAGTCAGTGGGTGAGAGCTGTCCTTGCATaGGTCATCTGGTCGCTGGTT +
Preference number: 5 (lower is better)
Translates to: RLRPGEKPEGTERASQWVRAVLA*VIWSLV
Trigger: AACCAGCGACCAGATGACCAATGCAAGGACAGCTCT...CACCCACTGACTAGCCCGCTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp AGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGCTGCTTTTGTGGAAGCCGAACATCCCTGGCTaGATGGGGTCTCGAACCCGG +
Preference number: 5 (lower is better)
Translates to: RDTGTAHFLFFLKLLLWKPNIPG*MGSRTR
Trigger: CCGGGTTCGAGACCCCATCAAGCCAGGGATGTTCGG...CTTCCACAAAAGCAGCTTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp AGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGCTAGTCAGTGGGTGGCACAAGGTAGGTGGGAACAGTaGCTGGGAGAAGTCACATTG +
Preference number: 5 (lower is better)
Translates to: RPGEKPEGTERASQWVAQGRWEQ*LGEVTL
Trigger: CAATGTGACTTCTCCCAGCAACTGTTCCCACCTACC...TTGTGCCACCCACTGACTAGCCCGCTCTGTACCCTCTGGCTTTTCACCTGGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS GCA 90 bp ATGGGGTGCCAAACACCTTTGCCACAGGATGCTGAACACTCAGAGTaGCCCACTTGTTTCCAGTATCCAGCAGAAGACCCCATGGCTGTC +
Preference number: 5 (lower is better)
Translates to: MGCQTPLPQDAEHSE*PTCFQYPAEDPMAV
Trigger: GACAGCCATGGGGTCTTCTGCTGGATACTGGAAACAAGTGGGGCACTCTGAGTGTTCAGCATCCTGTGGCAAAGGTGTTTGGCACCCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp TTTCTCCCCAGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTAGAAGAGTTCTTGGGTaGCCCGGGTCTGTGAGGATG +
Preference number: 5 (lower is better)
Translates to: FLPSPEKHEGYRHRPLPIRRVLG*PGSVRM
Trigger: CATCCTCACAGACCCGGGCAACCCAAGAACTCTTCT...AATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCTGGGGAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp GCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACGAGCTGAGAGTCTGGTaGCCACTCAGGCACTGGACT +
Preference number: 5 (lower is better)
Translates to: ATGARMSYADVSLFHPRHELRVW*PLRHWT
Trigger: AGTCCAGTGCCTGAGTGGCAACCAGACTCTCAGCTC...GTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp TGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGCCCTTTGCAGGGTTGGCTGTaGCAGGGCCGCTTCCTGGAA +
Preference number: 5 (lower is better)
Translates to: CLMLTFLFFTLDTSGPCPLQGWL*QGRFLE
Trigger: TTCCAGGAAGCGGCCCTGCAACAGCCAACCCTGCAA...AGGGCAGGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp TGGCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACTCATCTGGTCGCTGGTaGCAGGGTTGGCTGTTGCAG +
Preference number: 5 (lower is better)
Translates to: WRLGLGCLMLTFLFFTLDSSGRW*QGWLLQ
Trigger: CTGCAACAGCCAACCCTGCAACCAGCGACCAGATGA...GTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 90 bp AAAGATCATATAGACGTCCACAGGCTGAGTGGTAGGGCCTTCTGCTaGCAGACTCTCCCCCTTGCCTTCTTCCCGTGGAGGACGGTTATA +
Preference number: 5 (lower is better)
Translates to: KDHIDVHRLSGRAFC*QTLPLAFFPWRTVI
Trigger: TATAACCGTCCTCCACGGGAAGAAGGCAAGGGGGAGAGTCTGTCAGCAGAAGGCCCTACCACTCAGCCTGTGGACGTCTATATGATCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp GCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACGAAGGGCTGGAGGCTTaGTGGAAGGACTCTCTAGGA +
Preference number: 5 (lower is better)
Translates to: ATGARMSYADVSLFHPRHEGLEA*WKDSLG
Trigger: TCCTAGAGAGTCCTTCCACAAAGCCTCCAGCCCTTC...GTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp CTTTCTCAAGCTGCTTTTGTGGAAGTGATAAACATACACAGGACAGACCCCCAGAGTCGGAGGAGGCACTaGGGGAATCCGCACCTGACG +
Preference number: 5 (lower is better)
Translates to: LSQAAFVEVINIHRTDPQSRRRH*GNPHLT
Trigger: CGTCAGGTGCGGATTCCCCAAGTGCCTCCTCCGACT...CTGGGGGTCTGTCCTGTGTATGTTTATCACTTCCACAAAAGCAGCTTGAGAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp TGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGCCCTCTGGGAGAAGTCACATaGAACTCGGCCCCCAGCTTG +
Preference number: 5 (lower is better)
Translates to: CLMLTFLFFTLDTSGPCPLGEVT*NSAPSL
Trigger: CAAGCTGGGGGCCGAGTTCAATGTGACTTCTCCCAG...AGGGCAGGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp AGCCCAGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTCTTTCTCAAGAGCTGAGAGTCTGGTaGCCACTCAGGCACTGGACT +
Preference number: 5 (lower is better)
Translates to: SPEKHEGYRHRPLPILSQELRVW*PLRHWT
Trigger: AGTCCAGTGCCTGAGTGGCAACCAGACTCTCAGCTC...TTGAGAAAGAATAGGAAGTGGGCGGTGCCTGTATCCCTCATGCTTTTCTGGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp AGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGCTAGTCAGTGGGTGGCACAAACCTGGGTTGTCCTCTaGAAAGATCATATAGACGTC +
Preference number: 5 (lower is better)
Translates to: RPGEKPEGTERASQWVAQTWVVL*KDHIDV
Trigger: GACGTCTATATGATCTTTCAAGAGGACAACCCAGGT...TTGTGCCACCCACTGACTAGCCCGCTCTGTACCCTCTGGCTTTTCACCTGGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp TGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGACCTGGGTTGTCCTCTaGAAAGATCATATAGACGTC +
Preference number: 5 (lower is better)
Translates to: WRIPLARLRPGEKPEGTETWVVL*KDHIDV
Trigger: GACGTCTATATGATCTTTCAAGAGGACAACCCAGGT...CTCTGTACCCTCTGGCTTTTCACCTGGTCTCAGCCTTGCCAGAGGGATCCTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp CTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTCATCTGGTCGCTGGTaGCAGGGTTGGCTGTTGCAG +
Preference number: 5 (lower is better)
Translates to: LGCLMLTFLFFTLDTSGPSSGRW*QGWLLQ
Trigger: CTGCAACAGCCAACCCTGCAACCAGCGACCAGATGA...GGGACCACTTGTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp GCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAGAGCTGTCCTTGCATaGGTCATCTGGTCGCTGGTT +
Preference number: 5 (lower is better)
Translates to: ATGARMSYADVSLFHPRHRAVLA*VIWSLV
Trigger: AACCAGCGACCAGATGACCAATGCAAGGACAGCTCT...GTGTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp TGGCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACGATAATGTCTCTGTGTaGTGTGCCAGACCCACACTC +
Preference number: 5 (lower is better)
Translates to: WRLGLGCLMLTFLFFTLDDNVSV*CARPTL
Trigger: GAGTGTGGGTCTGGCACACAACACAGAGACATTATC...GTCGAGGGTGAAAAAGAGAAACGTCAGCATAAGACATCCTAGCCCCAGTCGCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS-3UTR CAA 90 bp CCTATTCTTTCTCAAGCTGCTTTTGTGGAAGTGATAAACATACACAGGACAGACGATAATGTCTCTGTGTaGTGTGCCAGACCCACACTC +
Preference number: 5 (lower is better)
Translates to: PILSQAAFVEVINIHRTDDNVSV*CARPTL
Trigger: GAGTGTGGGTCTGGCACACAACACAGAGACATTATC...GTCTGTCCTGTGTATGTTTATCACTTCCACAAAAGCAGCTTGAGAAAGAATAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS GCA 72 bp CATCACCCCCGCAGACTCCGCAGCCATCCGGACGCCTaGCAGAGCCAAGGACCCCATCACAGCCAGGGCTCA +
Preference number: 6 (lower is better)
Translates to: HHPRRLRSHPDA*QSQGPHHSQGS
Trigger: TGAGCCCTGGCTGTGATGGGGTCCTTGGCTCTGGCAGGCGTCCGGATGGCTGCGGAGTCTGCGGGGGTGATG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 72 bp GCTCTGCTGGCTCCGGGGGACAGGAGAGAAAGGAGGTaGGTGTCGTCGCTCTGCTCCCTGGGGACTGCTCCA +
Preference number: 6 (lower is better)
Translates to: ALLAPGDRRERR*VSSLCSLGTAP
Trigger: TGGAGCAGTCCCCAGGGAGCAGAGCGACGACACCCACCTCCTTTCTCTCCTGTCCCCCGGAGCCAGCAGAGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 72 bp CCCAGTGGCCACAGAGGTGCAGCTGACAAGGCTGGGTaGTGTTGGGCCGGGGGAGATGTCCACAGCGCTCTG +
Preference number: 6 (lower is better)
Translates to: PSGHRGAADKAG*CWAGGDVHSAL
Trigger: CAGAGCGCTGTGGACATCTCCCCCGGCCCAACATCACCCAGCCTTGTCAGCTGCACCTCTGTGGCCACTGGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS GCA 72 bp AAGGAGGTGGGTGTCGTCGCTCTGCTCCCTGGGGACTaGTCCAACTTCCCGGGGAAGGTGGCATTCGTGGCC +
Preference number: 6 (lower is better)
Translates to: KEVGVVALLPGD*SNFPGKVAFVA
Trigger: GGCCACGAATGCCACCTTCCCCGGGAAGTTGGAGCAGTCCCCAGGGAGCAGAGCGACGACACCCACCTCCTT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS GCA 72 bp GGGACCTGTGAGGACCTGGAGGTCTCCAGTGCCTCCTaGTCTGCTGGCTCCGGGGGACAGGAGAGAAAGGAG +
Preference number: 6 (lower is better)
Translates to: GTCEDLEVSSAS*SAGSGGQERKE
Trigger: CTCCTTTCTCTCCTGTCCCCCGGAGCCAGCAGAGCAGGAGGCACTGGAGACCTCCAGGTCCTCACAGGTCCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS GCA 72 bp GCGGCTTCTGAGAGGGCAGCCCTGCTCAGTGCTTCCTaGTTCCGGGTCTCCCTGAAGGGTCTCCCCACTCCT +
Preference number: 6 (lower is better)
Translates to: AASERAALLSAS*FRVSLKGLPTP
Trigger: AGGAGTGGGGAGACCCTTCAGGGAGACCCGGAAGCAGGAAGCACTGAGCAGGGCTGCCCTCTCAGAAGCCGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CAA 72 bp CCCCATGGCTGTCCTGACACGAGTCGGAGGAGGCACTaGGGGAATCCGCACCTGACGTTGGAGGGTGCCTGG +
Preference number: 6 (lower is better)
Translates to: PHGCPDTSRRRH*GNPHLTLEGAW
Trigger: CCAGGCACCCTCCAACGTCAGGTGCGGATTCCCCAAGTGCCTCCTCCGACTCGTGTCAGGACAGCCATGGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CAA 90 bp AGCAGAAGACCCCATGGCTGTCCTGACACGAGTCGGAGGAGGCACTaGGGGAATCCGCACCTGACGTTGGAGGGTGCCTGGTGCCCGGAC +
Preference number: 6 (lower is better)
Translates to: SRRPHGCPDTSRRRH*GNPHLTLEGAWCPD
Trigger: GTCCGGGCACCAGGCACCCTCCAACGTCAGGTGCGGATTCCCCAAGTGCCTCCTCCGACTCGTGTCAGGACAGCCATGGGGTCTTCTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 72 bp CAGCCCTGCTCAGTGCTTCCTGCTTCCGGGTCTCCCTaGAGGGTCTCCCCACTCCTAAGGCAGACCACAGCG +
Preference number: 6 (lower is better)
Translates to: QPCSVLPASGSP*RVSPLLRQTTA
Trigger: CGCTGTGGTCTGCCTTAGGAGTGGGGAGACCCTTCAGGGAGACCCGGAAGCAGGAAGCACTGAGCAGGGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 72 bp TGGGCTGGAGTCTCTTGTCAGGGGCAGCCAGCCATCTaGGGACCTGTGAGGACCTGGAGGTCTCCAGTGCCT +
Preference number: 6 (lower is better)
Translates to: WAGVSCQGQPAI*GPVRTWRSPVP
Trigger: AGGCACTGGAGACCTCCAGGTCCTCACAGGTCCCCAGATGGCTGGCTGCCCCTGACAAGAGACTCCAGCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 72 bp GGTGATGTTGGGCCGGGGGAGATGTCCACAGCGCTCTaGAGGTACCGAGGAGCCACCACCTCCGAATTCCTG +
Preference number: 6 (lower is better)
Translates to: GDVGPGEMSTAL*RYRGATTSEFL
Trigger: CAGGAATTCGGAGGTGGTGGCTCCTCGGTACCTCCAGAGCGCTGTGGACATCTCCCCCGGCCCAACATCACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 72 bp GGGGAGCTAATCTCCCAGTGGCCACAGAGGTGCAGCTaGCAAGGCTGGGTGATGTTGGGCCGGGGGAGATGT +
Preference number: 6 (lower is better)
Translates to: GELISQWPQRCS*QGWVMLGRGRC
Trigger: ACATCTCCCCCGGCCCAACATCACCCAGCCTTGTCAGCTGCACCTCTGTGGCCACTGGGAGATTAGCTCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 72 bp CTAAACTGCAGGCACGCATATCGGGAGGGCGGCTTCTaGGAGGGCAGCCCTGCTCAGTGCTTCCTGCTTCCG +
Preference number: 6 (lower is better)
Translates to: LNCRHAYREGGF*EGSPAQCFLLP
Trigger: CGGAAGCAGGAAGCACTGAGCAGGGCTGCCCTCTCAGAAGCCGCCCTCCCGATATGCGTGCCTGCAGTTTAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 72 bp TGGCTGTTGCAGGGCCGCTTCCTGGAAGGTCTCAGGTaGGGAGGGCATCGGGAGCTGAGAGTCTGGTTGCCA +
Preference number: 6 (lower is better)
Translates to: WLLQGRFLEGLR*GGHRELRVWLP
Trigger: TGGCAACCAGACTCTCAGCTCCCGATGCCCTCCTCACCTGAGACCTTCCAGGAAGCGGCCCTGCAACAGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS GCA 72 bp CGAATTCCTGTCTGCAGAGTAGCTGGCGGTGCTGGGTaGCAGGGCCACAGGATCGGCTGCAGGATGTCCACT +
Preference number: 6 (lower is better)
Translates to: RIPVCRVAGGAG*QGHRIGCRMST
Trigger: AGTGGACATCCTGCAGCCGATCCTGTGGCCCTGGCACCCAGCACCGCCAGCTACTCTGCAGACAGGAATTCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 72 bp TGCTCCCTGGGGACTGCTCCAACTTCCCGGGGAAGGTaGCATTCGTGGCCCAAGGGATCCCTGGAAAGACCT +
Preference number: 6 (lower is better)
Translates to: CSLGTAPTSRGR*HSWPKGSLERP
Trigger: AGGTCTTTCCAGGGATCCCTTGGGCCACGAATGCCACCTTCCCCGGGAAGTTGGAGCAGTCCCCAGGGAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 72 bp AAGGGCTCCCACTGGTACAGCTGGCCCATGAATTCCTaGGAGTCAAAGGCGGCACACTGTAGGGCCCTGGGG +
Preference number: 6 (lower is better)
Translates to: KGSHWYSWPMNS*ESKAAHCRALG
Trigger: CCCCAGGGCCCTACAGTGTGCCGCCTTTGACTCCCAGGAATTCATGGGCCAGCTGTACCAGTGGGAGCCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 72 bp ACCCACACTCCGAGGAACACTCACTCCAGGGGCCTGTaGACCAGCGCCATGTCCTCTCACAGGGCCCTAAAC +
Preference number: 6 (lower is better)
Translates to: THTPRNTHSRGL*TSAMSSHRALN
Trigger: GTTTAGGGCCCTGTGAGAGGACATGGCGCTGGTTCACAGGCCCCTGGAGTGAGTGTTCCTCGGAGTGTGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 72 bp TCCTGGAAGGTCTCAGGTGAGGAGGGCATCGGGAGCTaGGAGTCTGGTTGCCACTCAGGCACTGGACTTCCC +
Preference number: 6 (lower is better)
Translates to: SWKVSGEEGIGS*ESGCHSGTGLP
Trigger: GGGAAGTCCAGTGCCTGAGTGGCAACCAGACTCTCAGCTCCCGATGCCCTCCTCACCTGAGACCTTCCAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS GCA 72 bp GTCTGGTTGCCACTCAGGCACTGGACTTCCCTCGTCTaGATGCCTCCCTGGCAGGATCGAGAACACGGACTC +
Preference number: 6 (lower is better)
Translates to: VWLPLRHWTSLV*MPPWQDREHGL
Trigger: GAGTCCGTGTTCTCGATCCTGCCAGGGAGGCATGCAGACGAGGGAAGTCCAGTGCCTGAGTGGCAACCAGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS GCA 72 bp CCTGTACCACCAGGGGGCAGTGTGGAGAGCTGTCCTTaGATTGGTCATCTGGTCGCTGGTTGCAGGGTTGGC +
Preference number: 6 (lower is better)
Translates to: PVPPGGSVESCP*IGHLVAGCRVG
Trigger: GCCAACCCTGCAACCAGCGACCAGATGACCAATGCAAGGACAGCTCTCCACACTGCCCCCTGGTGGTACAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 72 bp CAGGGATACTGGGAGCAAAGATGCTCCAGAGTGGGCTaGAGTCTCTTGTCAGGGGCAGCCAGCCATCTGGGG +
Preference number: 6 (lower is better)
Translates to: QGYWEQRCSRVG*SLLSGAASHLG
Trigger: CCCCAGATGGCTGGCTGCCCCTGACAAGAGACTCCAGCCCACTCTGGAGCATCTTTGCTCCCAGTATCCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 72 bp GTCTCCCCACTCCTAAGGCAGACCACAGCGCGTCTCTaGATTCCTGTCCCGCACTCGGCTGAGCACTTGGAA +
Preference number: 6 (lower is better)
Translates to: VSPLLRQTTARL*IPVPHSAEHLE
Trigger: TTCCAAGTGCTCAGCCGAGTGCGGGACAGGAATCCAGAGACGCGCTGTGGTCTGCCTTAGGAGTGGGGAGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 72 bp CATCGGGAGCTGAGAGTCTGGTTGCCACTCAGGCACTaGACTTCCCTCGTCTGCATGCCTCCCTGGCAGGAT +
Preference number: 6 (lower is better)
Translates to: HRELRVWLPLRH*TSLVCMPPWQD
Trigger: ATCCTGCCAGGGAGGCATGCAGACGAGGGAAGTCCAGTGCCTGAGTGGCAACCAGACTCTCAGCTCCCGATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CAA 72 bp TGGAACCATCCCTTCCCCTGTAGAAGAGTTCTTGGGTaGCCCGGGTCTGTGAGGATGCCTGCGGCTCCGGTG +
Preference number: 6 (lower is better)
Translates to: WNHPFPCRRVLG*PGSVRMPAAPV
Trigger: CACCGGAGCCGCAGGCATCCTCACAGACCCGGGCAACCCAAGAACTCTTCTACAGGGGAAGGGATGGTTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 72 bp ATAGACGTCCACAGGCTGAGTGGTAGGGCCTTCTGCTaGCAGACTCTCCCCCTTGCCTTCTTCCCGTGGAGG +
Preference number: 6 (lower is better)
Translates to: IDVHRLSGRAFC*QTLPLAFFPWR
Trigger: CCTCCACGGGAAGAAGGCAAGGGGGAGAGTCTGTCAGCAGAAGGCCCTACCACTCAGCCTGTGGACGTCTAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS GCA 72 bp GCATGTGAGGGCCGTGCTTTTCAGAGGCCAGCTCTGTaGTTGGAGGCTGAGATGGAACCATCCCTTCCCCTG +
Preference number: 6 (lower is better)
Translates to: ACEGRAFQRPAL*LEAEMEPSLPL
Trigger: CAGGGGAAGGGATGGTTCCATCTCAGCCTCCAAGCACAGAGCTGGCCTCTGAAAAGCACGGCCCTCACATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS GCA 72 bp ATTGGTCATCTGGTCGCTGGTTGCAGGGTTGGCTGTTaGAGGGCCGCTTCCTGGAAGGTCTCAGGTGAGGAG +
Preference number: 6 (lower is better)
Translates to: IGHLVAGCRVGC*RAASWKVSGEE
Trigger: CTCCTCACCTGAGACCTTCCAGGAAGCGGCCCTGCAACAGCCAACCCTGCAACCAGCGACCAGATGACCAAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 72 bp TCCTTGCATTGGTCATCTGGTCGCTGGTTGCAGGGTTaGCTGTTGCAGGGCCGCTTCCTGGAAGGTCTCAGG +
Preference number: 6 (lower is better)
Translates to: SLHWSSGRWLQG*LLQGRFLEGLR
Trigger: CCTGAGACCTTCCAGGAAGCGGCCCTGCAACAGCCAACCCTGCAACCAGCGACCAGATGACCAATGCAAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 72 bp ACCACCAGGGGGCAGTGTGGAGAGCTGTCCTTGCATTaGTCATCTGGTCGCTGGTTGCAGGGTTGGCTGTTG +
Preference number: 6 (lower is better)
Translates to: TTRGQCGELSLH*SSGRWLQGWLL
Trigger: CAACAGCCAACCCTGCAACCAGCGACCAGATGACCAATGCAAGGACAGCTCTCCACACTGCCCCCTGGTGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CAA 72 bp GTCCTTGCATTGGTCATCTGGTCGCTGGTTGCAGGGTaGGCTGTTGCAGGGCCGCTTCCTGGAAGGTCTCAG +
Preference number: 6 (lower is better)
Translates to: VLALVIWSLVAG*AVAGPLPGRSQ
Trigger: CTGAGACCTTCCAGGAAGCGGCCCTGCAACAGCCAACCCTGCAACCAGCGACCAGATGACCAATGCAAGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CAA 90 bp CTCCTGCTTGTCCACCTCATCACCATTACTGCCAACACACCGAACTaGCCGGCTCCTCTGACCACGACCACAGCGCACAGAGCACTGGCT +
Preference number: 6 (lower is better)
Translates to: LLLVHLITITANTPN*PAPLTTTTAHRALA
Trigger: AGCCAGTGCTCTGTGCGCTGTGGTCGTGGTCAGAGGAGCCGGCAAGTTCGGTGTGTTGGCAGTAATGGTGATGAGGTGGACAAGCAGGAG
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 72 bp CAAGGCAAAAGGCACTCTCCCATAACCGAACATCCCTaGCTTGATGGGGTCTCGAACCCGGAACCTCTGGGC +
Preference number: 6 (lower is better)
Translates to: QGKRHSPITEHP*LDGVSNPEPLG
Trigger: GCCCAGAGGTTCCGGGTTCGAGACCCCATCAAGCCAGGGATGTTCGGTTATGGGAGAGTGCCTTTTGCCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 72 bp GTGAGGGCCGTGCTTTTCAGAGGCCAGCTCTGTGCTTaGAGGCTGAGATGGAACCATCCCTTCCCCTGTAGA +
Preference number: 6 (lower is better)
Translates to: VRAVLFRGQLCA*RLRWNHPFPCR
Trigger: TCTACAGGGGAAGGGATGGTTCCATCTCAGCCTCCAAGCACAGAGCTGGCCTCTGAAAAGCACGGCCCTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 72 bp GCATCTCAGGCTGAGGCTGAAGGGCTGGAGGCTTTGTaGAAGGACTCTCTAGGACTGCAGGAGGGGAAGAGA +
Preference number: 6 (lower is better)
Translates to: ASQAEAEGLEAL*KDSLGLQEGKR
Trigger: TCTCTTCCCCTCCTGCAGTCCTAGAGAGTCCTTCCACAAAGCCTCCAGCCCTTCAGCCTCAGCCTGAGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 72 bp GTCTCTGGATTCCTGTCCCGCACTCGGCTGAGCACTTaGAACTCCAGTCACTGTAGAACCAGGCTGTGGTGC +
Preference number: 6 (lower is better)
Translates to: VSGFLSRTRLST*NSSHCRTRLWC
Trigger: GCACCACAGCCTGGTTCTACAGTGACTGGAGTTCCAAGTGCTCAGCCGAGTGCGGGACAGGAATCCAGAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CAA 72 bp TCAGCATCTCAGGCTGAGGCTGAAGGGCTGGAGGCTTaGTGGAAGGACTCTCTAGGACTGCAGGAGGGGAAG +
Preference number: 6 (lower is better)
Translates to: SASQAEAEGLEA*WKDSLGLQEGK
Trigger: CTTCCCCTCCTGCAGTCCTAGAGAGTCCTTCCACAAAGCCTCCAGCCCTTCAGCCTCAGCCTGAGATGCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CAA 72 bp GTCCACCTCATCACCATTACTGCCAACACACCGAACTaGCCGGCTCCTCTGACCACGACCACAGCGCACAGA +
Preference number: 6 (lower is better)
Translates to: VHLITITANTPN*PAPLTTTTAHR
Trigger: TCTGTGCGCTGTGGTCGTGGTCAGAGGAGCCGGCAAGTTCGGTGTGTTGGCAGTAATGGTGATGAGGTGGAC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CAA 72 bp TACCACCAGGGGGCAGTGTGGAGAGCTGTCCTTGCATaGGTCATCTGGTCGCTGGTTGCAGGGTTGGCTGTT +
Preference number: 6 (lower is better)
Translates to: YHQGAVWRAVLA*VIWSLVAGLAV
Trigger: AACAGCCAACCCTGCAACCAGCGACCAGATGACCAATGCAAGGACAGCTCTCCACACTGCCCCCTGGTGGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CAA 90 bp GCAGGCGGCCTGGGTAGGTGGGAACAGTTGCTGGGAGAAGTCACATaGAACTCGGCCCCCAGCTTGGACACACAGATAATGTCTCTGTGT +
Preference number: 6 (lower is better)
Translates to: AGGLGRWEQLLGEVT*NSAPSLDTQIMSLC
Trigger: ACACAGAGACATTATCTGTGTGTCCAAGCTGGGGGCCGAGTTCAATGTGACTTCTCCCAGCAACTGTTCCCACCTACCCAGGCCGCCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 72 bp CCCGTGGAGGACGGTTATACTGGAAGACAGTCCCAATaGCTGTATAGGACCCTGGAGGATCCACAGCCCAGT +
Preference number: 6 (lower is better)
Translates to: PVEDGYTGRQSQ*LYRTLEDPQPS
Trigger: ACTGGGCTGTGGATCCTCCAGGGTCCTATACAGCCATTGGGACTGTCTTCCAGTATAACCGTCCTCCACGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 72 bp CCGTGCTTTTCAGAGGCCAGCTCTGTGCTTGGAGGCTaGGATGGAACCATCCCTTCCCCTGTAGAAGAGTTC +
Preference number: 6 (lower is better)
Translates to: PCFSEASSVLGG*DGTIPSPVEEF
Trigger: GAACTCTTCTACAGGGGAAGGGATGGTTCCATCTCAGCCTCCAAGCACAGAGCTGGCCTCTGAAAAGCACGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 72 bp TTCTGTCTGAGCAGTTCCAGACCTTGGAGTTTCAGCTaGGTGAGAACGGGGTTCAGGGGGCTGCATGTGAGG +
Preference number: 6 (lower is better)
Translates to: FCLSSSRPWSFS*VRTGFRGLHVR
Trigger: CCTCACATGCAGCCCCCTGAACCCCGTTCTCACTCAGCTGAAACTCCAAGGTCTGGAACTGCTCAGACAGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS TCA 72 bp CAGCGTCCAGCCACACAGATGTCTAGGGATCCAGGCTaGCACAGGGTTCCATCCTGCACCTTTTCAGTGTGT +
Preference number: 6 (lower is better)
Translates to: QRPATQMSRDPG*HRVPSCTFSVC
Trigger: ACACACTGAAAAGGTGCAGGATGGAACCCTGTGTCAGCCTGGATCCCTAGACATCTGTGTGGCTGGACGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS GCA 72 bp AAGCACACTCCTGCTTGTCCACCTCATCACCATTACTaGCAACACACCGAACTTGCCGGCTCCTCTGACCAC +
Preference number: 6 (lower is better)
Translates to: KHTPACPPHHHY*QHTELAGSSDH
Trigger: GTGGTCAGAGGAGCCGGCAAGTTCGGTGTGTTGGCAGTAATGGTGATGAGGTGGACAAGCAGGAGTGTGCTT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CAA 72 bp TTCTGGGGAGCACTTCTGTCTGAGCAGTTCCAGACCTaGGAGTTTCAGCTGAGTGAGAACGGGGTTCAGGGG +
Preference number: 6 (lower is better)
Translates to: FWGALLSEQFQT*EFQLSENGVQG
Trigger: CCCCTGAACCCCGTTCTCACTCAGCTGAAACTCCAAGGTCTGGAACTGCTCAGACAGAAGTGCTCCCCAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CAA 72 bp GGCCCCCAGCTTGGACACACAGATAATGTCTCTGTGTaGTGTGCCAGACCCACACTCCGAGGAACACTCACT +
Preference number: 6 (lower is better)
Translates to: GPQLGHTDNVSV*CARPTLRGTLT
Trigger: AGTGAGTGTTCCTCGGAGTGTGGGTCTGGCACACAACACAGAGACATTATCTGTGTGTCCAAGCTGGGGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 72 bp GCAGGCTCGCATCTGTTCACTTTCCCCAGAACAGTTTaGAGCAGGGATACTGGGAGCAAAGATGCTCCAGAG +
Preference number: 6 (lower is better)
Translates to: AGSHLFTFPRTV*SRDTGSKDAPE
Trigger: CTCTGGAGCATCTTTGCTCCCAGTATCCCTGCTCCAAACTGTTCTGGGGAAAGTGAACAGATGCGAGCCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CAA 72 bp CTGGGTAGGTGGGAACAGTTGCTGGGAGAAGTCACATaGAACTCGGCCCCCAGCTTGGACACACAGATAATG +
Preference number: 6 (lower is better)
Translates to: LGRWEQLLGEVT*NSAPSLDTQIM
Trigger: CATTATCTGTGTGTCCAAGCTGGGGGCCGAGTTCAATGTGACTTCTCCCAGCAACTGTTCCCACCTACCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS GCA 72 bp CTGGAAAGACCTACTGTCTCCAAAAGAGGAGGTAGGTaGAGGGGTCCCTGTGTAGGAAGGAGCAGAACTAGT +
Preference number: 6 (lower is better)
Translates to: LERPTVSKRGGR*RGPCVGRSRTS
Trigger: ACTAGTTCTGCTCCTTCCTACACAGGGACCCCTGCACCTACCTCCTCTTTTGGAGACAGTAGGTCTTTCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8
CDS CCA 72 bp ACTCCTCTCCTGACTCACGGGAAATGCAGAGGAAAATaGGGTGCCAAACACCTTTGCCACAGGATGCTGAAC +
Preference number: 6 (lower is better)
Translates to: TPLLTHGKCRGK*GAKHLCHRMLN
Trigger: GTTCAGCATCCTGTGGCAAAGGTGTTTGGCACCCCATTTTCCTCTGCATTTCCCGTGAGTCAGGAGAGGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015994.4
ENSMUST00000117782.8