RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ADAMTS4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000006403

Ensembl transcript IDs: ENSMUST00000111314.2, ENSMUST00000111315.9, ENSMUST00000219033.2

Found 403 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCTTGTGGACTTCGAGTGCCTGGCAGAGCCTCTGTGGAGGGTGACTaGGAGAACAAGGACCACAGGAGCAGCAGCTGCCATTCCTTGAGC +
Preference number: 1 (lower is better)
Translates to: PCGLRVPGRASVEGD*ENKDHRSSSCHSLS
Trigger: GCTCAAGGAATGGCAGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCACTCGAAGTCCACAAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR GCA 90 bp ATCTCACCCTCTACACCTCCCTACTGTGTTTTAGCAGGAGGCAGTTaGAGAAGCCTGCTCATTCTCCCAGATGAGTCCGAGGCCCCGGCG +
Preference number: 1 (lower is better)
Translates to: ISPSTPPYCVLAGGS*RSLLILPDESEAPA
Trigger: CGCCGGGGCCTCGGACTCATCTGGGAGAATGAGCAGGCTTCTGCAACTGCCTCCTGCTAAAACACAGTAGGGAGGTGTAGAGGGTGAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR TCA 90 bp CTGCCAACCGAAGGTCCTGAGCCTGGGACTAAAGATAGGCACAAGTaGCATGAATCCTTGTGGACTTCGAGTGCCTGGCAGAGCCTCTGT +
Preference number: 1 (lower is better)
Translates to: LPTEGPEPGTKDRHK*HESLWTSSAWQSLC
Trigger: ACAGAGGCTCTGCCAGGCACTCGAAGTCCACAAGGATTCATGTCACTTGTGCCTATCTTTAGTCCCAGGCTCAGGACCTTCGGTTGGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR CCA 90 bp CCGCCATTCTTACAACTAAGCTCCTGTTTGTGTCCAGGGAGTTGTTaGGTTCTGTTCTTGTACCTTCATGTTCTTGTTGACTATCTTTGC +
Preference number: 1 (lower is better)
Translates to: PPFLQLSSCLCPGSC*VLFLYLHVLVDYLC
Trigger: GCAAAGATAGTCAACAAGAACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCTTAGTTGTAAGAATGGCGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR TCA 90 bp TCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTCTTGTTaGCTATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTA +
Preference number: 1 (lower is better)
Translates to: SRELLGSVLVPSCSC*LSLPSVYYVCCRCL
Trigger: TAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAGATAGTCAACAAGAACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR TCA 90 bp TGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCTCATTCTCCCAGATaGGTCCGAGGCCCCGGCGCC +
Preference number: 2 (lower is better)
Translates to: CLAEPLWRVTGRTRTTGAAHSPR*VRGPGA
Trigger: GGCGCCGGGGCCTCGGACTCATCTGGGAGAATGAGC...TGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR TCA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTTGCGGTTTGGGGCAGTaGGGCAGGCAGATCTCACCC +
Preference number: 2 (lower is better)
Translates to: QEQQLPFLEHLLSERLYACGLGQ*GRQISP
Trigger: GGGTGAGATCTGCCTGCCTCACTGCCCCAAACCGCA...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR TCA 90 bp CAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATGCTATTACATCATCCCTTGCTCATTCTCCCAGATaGGTCCGAGGCCCCGGCGCC +
Preference number: 2 (lower is better)
Translates to: QVQIHQLLECQDAITSSLAHSPR*VRGPGA
Trigger: GGCGCCGGGGCCTCGGACTCATCTGGGAGAATGAGC...AAGGGATGATGTAATAGCATCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR CCA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGAGGCCAGCCTGCGGTTTaGGGCAGTGAGGCAGGCAGA +
Preference number: 2 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGGQPAV*GSEAGR
Trigger: TCTGCCTGCCTCACTGCCCCAAACCGCAGGCTGGCC...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR TCA 90 bp AGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTGCTCATTCTCCCAGATaGGTCCGAGGCCCCGGCGCC +
Preference number: 2 (lower is better)
Translates to: SSCLCPGSCWVLFLYLHVAHSPR*VRGPGA
Trigger: GGCGCCGGGGCCTCGGACTCATCTGGGAGAATGAGC...AACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR TCA 90 bp CACACACACACACCACTCATATTTGTCACCAACACCCTGGATTTCATAGCTAGGTGCGGTTTGGGGCAGTaGGGCAGGCAGATCTCACCC +
Preference number: 2 (lower is better)
Translates to: HTHTPLIFVTNTLDFIARCGLGQ*GRQISP
Trigger: GGGTGAGATCTGCCTGCCTCACTGCCCCAAACCGCA...CCTAGCTATGAAATCCAGGGTGTTGGTGACAAATATGAGTGGTGTGTGTGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR GCA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTTTAGCAGGAGGCAGTTaGAGAAGCCTGCTCATTCTC +
Preference number: 2 (lower is better)
Translates to: QEQQLPFLEHLLSERLYALAGGS*RSLLIL
Trigger: GAGAATGAGCAGGCTTCTGCAACTGCCTCCTGCTAA...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR CCA 90 bp CTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTCTTGTGGCCAGCCTGCGGTTTaGGGCAGTGAGGCAGGCAGA +
Preference number: 2 (lower is better)
Translates to: LFVSRELLGSVLVPSCSCGQPAV*GSEAGR
Trigger: TCTGCCTGCCTCACTGCCCCAAACCGCAGGCTGGCC...ACAAGAACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR CCA 90 bp ATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGGGCCAGCCTGCGGTTTaGGGCAGTGAGGCAGGCAGA +
Preference number: 2 (lower is better)
Translates to: IFAKCLLCLLQVLTCLQKGQPAV*GSEAGR
Trigger: TCTGCCTGCCTCACTGCCCCAAACCGCAGGCTGGCC...CTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR GCA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGACACAGGAGCAGCAGCTaGCATTCCTTGAGCACCTAC +
Preference number: 2 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGHRSSS*HSLSTY
Trigger: GTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTGTG...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR CCA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATCTGTGGAGGGTGACTaGGAGAACAAGGACCACAGG +
Preference number: 2 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGSVEGD*ENKDHR
Trigger: CCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGA...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR CCA 90 bp AATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCACTGGCAGAGCCTCTGTaGAGGGTGACTGGGAGAACA +
Preference number: 2 (lower is better)
Translates to: NKMLNPNSSSDPPAPGMPLAEPL*RVTGRT
Trigger: TGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAG...TGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR TCA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGAGACAAGATGGCCATCTaGGAGTCTGAACTCTCTCCA +
Preference number: 2 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGDKMAI*ESELSP
Trigger: TGGAGAGAGTTCAGACTCTCAGATGGCCATCTTGTC...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR GCA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGAGCAGTTGCAGAAGCCTaGTCATTCTCCCAGATGAGT +
Preference number: 2 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGAVAEA*SFSQMS
Trigger: ACTCATCTGGGAGAATGAGCAGGCTTCTGCAACTGC...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR GCA 90 bp CACCTCTCCTGTTACAACGGCCTTTACTGTTTGAAAATCCTTGAGCACAGAGCACACAGGAGCAGCAGCTaGCATTCCTTGAGCACCTAC +
Preference number: 2 (lower is better)
Translates to: HLSCYNGLYCLKILEHRAHRSSS*HSLSTY
Trigger: GTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTGTG...TGCTCTGTGCTCAAGGATTTTCAAACAGTAAAGGCCGTTGTAACAGGAGAGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR GCA 90 bp CACACACACACACCACTCATATTTGTCACCAACACCCTGGATTTCATAGCTAGGGCAGTTGCAGAAGCCTaGTCATTCTCCCAGATGAGT +
Preference number: 2 (lower is better)
Translates to: HTHTPLIFVTNTLDFIARAVAEA*SFSQMS
Trigger: ACTCATCTGGGAGAATGAGCAGGCTTCTGCAACTGC...CCTAGCTATGAAATCCAGGGTGTTGGTGACAAATATGAGTGGTGTGTGTGTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR GCA 90 bp GGTAATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGTTAGCAGGAGGCAGTTaGAGAAGCCTGCTCATTCTC +
Preference number: 2 (lower is better)
Translates to: GNKMLNPNSSSDPPAPGMLAGGS*RSLLIL
Trigger: GAGAATGAGCAGGCTTCTGCAACTGCCTCCTGCTAA...CATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATTACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR TCA 90 bp CAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATGCTATTACATCATCCCTTAGGCAGTCCTACCTTTaGCTTTCCTTTTCCCAGAAA +
Preference number: 2 (lower is better)
Translates to: QVQIHQLLECQDAITSSLRQSYL*LSFSQK
Trigger: TTTCTGGGAAAAGGAAAGTCAAAGGTAGGACTGCCT...AAGGGATGATGTAATAGCATCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR TCA 90 bp ACTAAGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCAAGGCAGTCCTACCTTTaGCTTTCCTTTTCCCAGAAA +
Preference number: 2 (lower is better)
Translates to: TKLLFVSRELLGSVLVPSRQSYL*LSFSQK
Trigger: TTTCTGGGAAAAGGAAAGTCAAAGGTAGGACTGCCT...TGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCTTAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR TCA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGACCTTCATGTTCTTGTTaGCTATCTTTGCCAAGTGTT +
Preference number: 2 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGPSCSC*LSLPSV
Trigger: AACACTTGGCAAAGATAGTCAACAAGAACATGAAGG...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR GCA 90 bp GGTAATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGAGTGTTTATTATGTCTaGTGCAGGTGCTTACGTGCC +
Preference number: 2 (lower is better)
Translates to: GNKMLNPNSSSDPPAPGMSVYYV*CRCLRA
Trigger: GGCACGTAAGCACCTGCAGCAGACATAATAAACACT...CATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATTACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR CAA 90 bp TGTCACCACAAAGGTCACCTCTCCTGTTACAACGGCCTTTACTGTTaGAAAATCCTTGAGCACAGAGCAATGCTGTCAGAGCAGTTATTA +
Preference number: 2 (lower is better)
Translates to: CHHKGHLSCYNGLYC*KILEHRAMLSEQLL
Trigger: TAATAACTGCTCTGACAGCATTGCTCTGTGCTCAAGGATTTTCAAACAGTAAAGGCCGTTGTAACAGGAGAGGTGACCTTTGTGGTGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR TCA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTAAGGCAGTCCTACCTTTaGCTTTCCTTTTCCCAGAAA +
Preference number: 2 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVRQSYL*LSFSQK
Trigger: TTTCTGGGAAAAGGAAAGTCAAAGGTAGGACTGCCT...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR TCA 90 bp TTCATGTTCTTGTTGACTATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGGACAAGATGGCCATCTaGGAGTCTGAACTCTCTCCA +
Preference number: 2 (lower is better)
Translates to: FMFLLTIFAKCLLCLLQVDKMAI*ESELSP
Trigger: TGGAGAGAGTTCAGACTCTCAGATGGCCATCTTGTC...CACCTGCAGCAGACATAATAAACACTTGGCAAAGATAGTCAACAAGAACATGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR GCA 90 bp TTCATGTTCTTGTTGACTATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGGCAGTTGCAGAAGCCTaGTCATTCTCCCAGATGAGT +
Preference number: 2 (lower is better)
Translates to: FMFLLTIFAKCLLCLLQVAVAEA*SFSQMS
Trigger: ACTCATCTGGGAGAATGAGCAGGCTTCTGCAACTGC...CACCTGCAGCAGACATAATAAACACTTGGCAAAGATAGTCAACAAGAACATGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR CAA 90 bp CAACTAAGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTaGTACCTTCATGTTCTTGTTGACTATCTTTGCCAAGTGTTTATT +
Preference number: 2 (lower is better)
Translates to: QLSSCLCPGSCWVLF*YLHVLVDYLCQVFI
Trigger: AATAAACACTTGGCAAAGATAGTCAACAAGAACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCTTAGTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR TCA 72 bp AGGAGGCAGTTGCAGAAGCCTGCTCATTCTCCCAGATaGGTCCGAGGCCCCGGCGCCCAAAAAGGGCAGCCG +
Preference number: 3 (lower is better)
Translates to: RRQLQKPAHSPR*VRGPGAQKGQP
Trigger: CGGCTGCCCTTTTTGGGCGCCGGGGCCTCGGACTCATCTGGGAGAATGAGCAGGCTTCTGCAACTGCCTCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR CCA 72 bp CTTCGAGTGCCTGGCAGAGCCTCTGTGGAGGGTGACTaGGAGAACAAGGACCACAGGAGCAGCAGCTGCCAT +
Preference number: 3 (lower is better)
Translates to: LRVPGRASVEGD*ENKDHRSSSCH
Trigger: ATGGCAGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCACTCGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR CCA 72 bp ATCCTTGTGGACTTCGAGTGCCTGGCAGAGCCTCTGTaGAGGGTGACTGGGAGAACAAGGACCACAGGAGCA +
Preference number: 3 (lower is better)
Translates to: ILVDFECLAEPL*RVTGRTRTTGA
Trigger: TGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCACTCGAAGTCCACAAGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR CAA 90 bp TGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGGAAAGCAGGGCAGGTaGTACCTCATACATAAACAC +
Preference number: 3 (lower is better)
Translates to: CLAEPLWRVTGRTRTTGAGKQGR*YLIHKH
Trigger: GTGTTTATGTATGAGGTACAACCTGCCCTGCTTTCC...TGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR CAA 90 bp GCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTAAGGCAGTCCTACCTTaGACTTTCCTTTTCCCAGAA +
Preference number: 3 (lower is better)
Translates to: AEPLWRVTGRTRTTGAAAKAVLP*TFLFPE
Trigger: TTCTGGGAAAAGGAAAGTCAAAGGTAGGACTGCCTT...AGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR CAA 90 bp CCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGCCATTAAGGCAGTCCTACCTTaGACTTTCCTTTTCCCAGAA +
Preference number: 3 (lower is better)
Translates to: PLWRVTGRTRTTGAAAAIKAVLP*TFLFPE
Trigger: TTCTGGGAAAAGGAAAGTCAAAGGTAGGACTGCCTT...AATGGCAGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR TCA 72 bp GAAGGTCCTGAGCCTGGGACTAAAGATAGGCACAAGTaGCATGAATCCTTGTGGACTTCGAGTGCCTGGCAG +
Preference number: 3 (lower is better)
Translates to: EGPEPGTKDRHK*HESLWTSSAWQ
Trigger: CTGCCAGGCACTCGAAGTCCACAAGGATTCATGTCACTTGTGCCTATCTTTAGTCCCAGGCTCAGGACCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR GCA 72 bp TCTACACCTCCCTACTGTGTTTTAGCAGGAGGCAGTTaGAGAAGCCTGCTCATTCTCCCAGATGAGTCCGAG +
Preference number: 3 (lower is better)
Translates to: STPPYCVLAGGS*RSLLILPDESE
Trigger: CTCGGACTCATCTGGGAGAATGAGCAGGCTTCTGCAACTGCCTCCTGCTAAAACACAGTAGGGAGGTGTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR GCA 72 bp TCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATaGTATTACATCATCCCTTCTCTGCCCCTTCCGCCA +
Preference number: 3 (lower is better)
Translates to: SSSDPPAPGMPG*YYIIPSLPLPP
Trigger: TGGCGGAAGGGGCAGAGAAGGGATGATGTAATAGCATCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR GCA 72 bp ACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATaGCAGGATGCTATTACATCATCCCTTCTCTGCCCC +
Preference number: 3 (lower is better)
Translates to: TLTQVQIHQLLE*QDAITSSLLCP
Trigger: GGGGCAGAGAAGGGATGATGTAATAGCATCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR CAA 90 bp CAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATGCTATTACATCATCCCTTTTTAGCAGGAGGCAGTaGCAGAAGCCTGCTCATTCT +
Preference number: 3 (lower is better)
Translates to: QVQIHQLLECQDAITSSLFSRRQ*QKPAHS
Trigger: AGAATGAGCAGGCTTCTGCAACTGCCTCCTGCTAAA...AAGGGATGATGTAATAGCATCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR CAA 90 bp CAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATGCTATTACATCATCCCTTCAACTAAGCTCCTGTTaGTGTCCAGGGAGTTGTTGG +
Preference number: 3 (lower is better)
Translates to: QVQIHQLLECQDAITSSLQLSSC*CPGSCW
Trigger: CCAACAACTCCCTGGACACAAACAGGAGCTTAGTTG...AAGGGATGATGTAATAGCATCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR CCA 72 bp TTGAGCACAGAGCAATGCTGTCAGAGCAGTTATTACTaGCCCCATTCCACAGACTTGTACTCCAAGGTCACT +
Preference number: 3 (lower is better)
Translates to: LSTEQCCQSSYY*PHSTDLYSKVT
Trigger: AGTGACCTTGGAGTACAAGTCTGTGGAATGGGGCCAGTAATAACTGCTCTGACAGCATTGCTCTGTGCTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR CAA 90 bp AGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTTTTAGCAGGAGGCAGTaGCAGAAGCCTGCTCATTCT +
Preference number: 3 (lower is better)
Translates to: SSCLCPGSCWVLFLYLHVFSRRQ*QKPAHS
Trigger: AGAATGAGCAGGCTTCTGCAACTGCCTCCTGCTAAA...AACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR CAA 90 bp GGTAATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGGTGTCCAGGGAGTTGTaGGGTTCTGTTCTTGTACCT +
Preference number: 3 (lower is better)
Translates to: GNKMLNPNSSSDPPAPGMVSREL*GSVLVP
Trigger: AGGTACAAGAACAGAACCCAACAACTCCCTGGACAC...CATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATTACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR CAA 90 bp CACCTCTCCTGTTACAACGGCCTTTACTGTTTGAAAATCCTTGAGCACAGAGCACAACTAAGCTCCTGTTaGTGTCCAGGGAGTTGTTGG +
Preference number: 3 (lower is better)
Translates to: HLSCYNGLYCLKILEHRAQLSSC*CPGSCW
Trigger: CCAACAACTCCCTGGACACAAACAGGAGCTTAGTTG...TGCTCTGTGCTCAAGGATTTTCAAACAGTAAAGGCCGTTGTAACAGGAGAGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR CAA 90 bp CACCTCTCCTGTTACAACGGCCTTTACTGTTTGAAAATCCTTGAGCACAGAGCAGTCACTTATCAGCACTaGCCCAACATCACCCAGGTA +
Preference number: 3 (lower is better)
Translates to: HLSCYNGLYCLKILEHRAVTYQH*PNITQV
Trigger: TACCTGGGTGATGTTGGGCAAGTGCTGATAAGTGAC...TGCTCTGTGCTCAAGGATTTTCAAACAGTAAAGGCCGTTGTAACAGGAGAGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR CAA 90 bp CAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATGCTATTACATCATCCCTTAAGGCAGTCCTACCTTaGACTTTCCTTTTCCCAGAA +
Preference number: 3 (lower is better)
Translates to: QVQIHQLLECQDAITSSLKAVLP*TFLFPE
Trigger: TTCTGGGAAAAGGAAAGTCAAAGGTAGGACTGCCTT...AAGGGATGATGTAATAGCATCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR CAA 90 bp ATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGGGAAAGCAGGGCAGGTaGTACCTCATACATAAACAC +
Preference number: 3 (lower is better)
Translates to: IFAKCLLCLLQVLTCLQKGKQGR*YLIHKH
Trigger: GTGTTTATGTATGAGGTACAACCTGCCCTGCTTTCC...CTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR-3UTR CAA 90 bp TTCATGTTCTTGTTGACTATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGTTTAGCAGGAGGCAGTaGCAGAAGCCTGCTCATTCT +
Preference number: 3 (lower is better)
Translates to: FMFLLTIFAKCLLCLLQVFSRRQ*QKPAHS
Trigger: AGAATGAGCAGGCTTCTGCAACTGCCTCCTGCTAAA...CACCTGCAGCAGACATAATAAACACTTGGCAAAGATAGTCAACAAGAACATGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR GCA 72 bp CTATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTaGTTACGTGCCTACAGAAGTAATAGACAAGATGGC +
Preference number: 3 (lower is better)
Translates to: LSLPSVYYVCCR*LRAYRSNRQDG
Trigger: GCCATCTTGTCTATTACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAGATAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR CCA 72 bp TTACAACTAAGCTCCTGTTTGTGTCCAGGGAGTTGTTaGGTTCTGTTCTTGTACCTTCATGTTCTTGTTGAC +
Preference number: 3 (lower is better)
Translates to: LQLSSCLCPGSC*VLFLYLHVLVD
Trigger: GTCAACAAGAACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCTTAGTTGTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR TCA 72 bp TTGTTGGGTTCTGTTCTTGTACCTTCATGTTCTTGTTaGCTATCTTTGCCAAGTGTTTATTATGTCTGCTGC +
Preference number: 3 (lower is better)
Translates to: LLGSVLVPSCSC*LSLPSVYYVCC
Trigger: GCAGCAGACATAATAAACACTTGGCAAAGATAGTCAACAAGAACATGAAGGTACAAGAACAGAACCCAACAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR CCA 72 bp TTTAATCCTTACAACCAATTTCTAAGGGATTATTATTaGCACATGAGAAAACTAATGCTCAAAGATGCGGGG +
Preference number: 3 (lower is better)
Translates to: FNPYNQFLRDYY*HMRKLMLKDAG
Trigger: CCCCGCATCTTTGAGCATTAGTTTTCTCATGTGCCAATAATAATCCCTTAGAAATTGGTTGTAAGGATTAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp GTGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCCCCGGGGGAGGGGGCTaGCGGGCCACGCTAAGGACA +
Preference number: 4 (lower is better)
Translates to: VPGRASVEGDWENKDHRSPGGGG*RATLRT
Trigger: TGTCCTTAGCGTGGCCCGCCAGCCCCCTCCCCCGGG...GCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp GCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTAGGAGGGCGTGGTGTTaGAGGGACTGGCCGCGGGAC +
Preference number: 4 (lower is better)
Translates to: AEPLWRVTGRTRTTGAAARRAWC*RDWPRD
Trigger: GTCCCGCGGCCAGTCCCTTCAACACCACGCCCTCCT...AGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp GCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGCCAGGTGCAGAAGCTaGGTAGGGTCTGGGCGGCAC +
Preference number: 4 (lower is better)
Translates to: AEPLWRVTGRTRTTGAAAARCRS*VGSGRH
Trigger: GTGCCGCCCAGACCCTACGCAGCTTCTGCACCTGGC...AGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp GCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGACAGCGGCCACCCATaGAGGCCTGTGAAGACCCGC +
Preference number: 4 (lower is better)
Translates to: AEPLWRVTGRTRTTGAAADSGHP*RPVKTR
Trigger: GCGGGTCTTCACAGGCCTGCATGGGTGGCCGCTGTC...AGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTCCCGGGGGAGGGGGCTaGCGGGCCACGCTAAGGACA +
Preference number: 4 (lower is better)
Translates to: QEQQLPFLEHLLSERLYAPGGGG*RATLRT
Trigger: TGTCCTTAGCGTGGCCCGCCAGCCCCCTCCCCCGGG...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp TTAGCAGGAGGCAGTTGCAGAAGCCTGCTCATTCTCCCAGATGAGTCCGAGGCCTTCCGGCGTAGGATGTaGGCCCCCGGTCCCCCAGCA +
Preference number: 4 (lower is better)
Translates to: LAGGSCRSLLILPDESEAFRRRM*APGPPA
Trigger: TGCTGGGGGACCGGGGGCTCACATCCTACGCCGGAA...GGCCTCGGACTCATCTGGGAGAATGAGCAGGCTTCTGCAACTGCCTCCTGCTAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp TTAGCAGGAGGCAGTTGCAGAAGCCTGCTCATTCTCCCAGATGAGTCCGAGGCCGGTCTGGGCGGCACTTaGCCCCACTTGGGGCCCTTC +
Preference number: 4 (lower is better)
Translates to: LAGGSCRSLLILPDESEAGLGGT*PHLGPF
Trigger: GAAGGGCCCCAAGTGGGGCCAAGTGCCGCCCAGACC...GGCCTCGGACTCATCTGGGAGAATGAGCAGGCTTCTGCAACTGCCTCCTGCTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp GTGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCCACCCCCACAAGTCCTaGAGCAGTCACCCCATGGTC +
Preference number: 4 (lower is better)
Translates to: VPGRASVEGDWENKDHRSHPHKS*SSHPMV
Trigger: GACCATGGGGTGACTGCTCCAGGACTTGTGGGGGTG...GCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp TGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCACGCTGTAGCGCAAGCTaGCTGCCCCAGGAAGAACCA +
Preference number: 4 (lower is better)
Translates to: CLAEPLWRVTGRTRTTGARCSAS*LPQEEP
Trigger: TGGTTCTTCCTGGGGCAGTCAGCTTGCGCTACAGCG...TGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp GCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTCGCTGTAGCGCAAGCTaGCTGCCCCAGGAAGAACCA +
Preference number: 4 (lower is better)
Translates to: AEPLWRVTGRTRTTGAAARCSAS*LPQEEP
Trigger: TGGTTCTTCCTGGGGCAGTCAGCTTGCGCTACAGCG...AGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp GTGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAAGACCCGCAGGGAGTaGCATCAGCCCAAGGTGAGT +
Preference number: 4 (lower is better)
Translates to: VPGRASVEGDWENKDHRSKTRRE*HQPKVS
Trigger: ACTCACCTTGGGCTGATGGCACTCCCTGCGGGTCTT...GCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp GCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGGCAGTTCTCCGTGTTaGAGGAGCGGAAGCGAGTCC +
Preference number: 4 (lower is better)
Translates to: AEPLWRVTGRTRTTGAAAGSSPC*RSGSES
Trigger: GGACTCGCTTCCGCTCCTGCAACACGGAGAACTGCC...AGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp GTGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCATCTCTGCCCTGCGTTaGAGCCAGTCTTGGGGAGGA +
Preference number: 4 (lower is better)
Translates to: VPGRASVEGDWENKDHRSISALR*SQSWGG
Trigger: TCCTCCCCAAGACTGGCTGCAACGCAGGGCAGAGAT...GCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGCCATTGGCAGCACAGGGCGGTaGCAGCTGTGGACAATGGCT +
Preference number: 4 (lower is better)
Translates to: PLWRVTGRTRTTGAAAAIGSTGR*QLWTMA
Trigger: AGCCATTGTCCACAGCTGCCACCGCCCTGTGCTGCC...AATGGCAGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp TGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGACAGAGGAGGTGTCTaGGGAGCAGGGAGTCCCATC +
Preference number: 4 (lower is better)
Translates to: CLAEPLWRVTGRTRTTGADRGGV*GAGSPI
Trigger: GATGGGACTCCCTGCTCCCCAGACACCTCCTCTGTC...TGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp GCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTCGGTCACAGCCAGCATaGATACAGCGGCCCTGGACA +
Preference number: 4 (lower is better)
Translates to: AEPLWRVTGRTRTTGAAARSQPA*IQRPWT
Trigger: TGTCCAGGGCCGCTGTATCCATGCTGGCTGTGACCG...AGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp TGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCATGGGACCTTGGCTGCTaGCAGGACTCTTCCGGCGTA +
Preference number: 4 (lower is better)
Translates to: CLAEPLWRVTGRTRTTGAWDLGC*QDSSGV
Trigger: TACGCCGGAAGAGTCCTGCCAGCAGCCAAGGTCCCA...TGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp TGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGAGAGAGGAGGGTCCTaGGATCTCTCTCACCTCCCT +
Preference number: 4 (lower is better)
Translates to: CLAEPLWRVTGRTRTTGAERGGS*DLSHLP
Trigger: AGGGAGGTGAGAGAGATCTCAGGACCCTCCTCTCTC...TGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111314.2
CDS-3UTR TCA 90 bp GTGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCGTTCATGAGCAGCAGTaGAGGCTGACTGGAGCCCAT +
Preference number: 4 (lower is better)
Translates to: VPGRASVEGDWENKDHRSVHEQQ*RLTGAH
Trigger: ATGGGCTCCAGTCAGCCTTCACTGCTGCTCATGAAC...GCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp TGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAACATGGCATGGCCATTaGGGTGGCCAGAGCACCAGA +
Preference number: 4 (lower is better)
Translates to: CLAEPLWRVTGRTRTTGATWHGH*GGQSTR
Trigger: TCTGGTGCTCTGGCCACCTCAATGGCCATGCCATGT...TGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTACCCATGCAGGCCTGTaGAGACCCGCAGGGAGTGCC +
Preference number: 4 (lower is better)
Translates to: QEQQLPFLEHLLSERLYATHAGL*RPAGSA
Trigger: GGCACTCCCTGCGGGTCTTCACAGGCCTGCATGGGT...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp TGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCACCCCAGCCTCCAGCCTaGGGAACATTGAAGTCCTTG +
Preference number: 4 (lower is better)
Translates to: CLAEPLWRVTGRTRTTGAPQPPA*GTLKSL
Trigger: CAAGGACTTCAATGTTCCTCAGGCTGGAGGCTGGGG...TGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp TGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAAAGACCCGCAGGGAGTaGCATCAGCCCAAGGTGAGT +
Preference number: 4 (lower is better)
Translates to: CLAEPLWRVTGRTRTTGAKTRRE*HQPKVS
Trigger: ACTCACCTTGGGCTGATGGCACTCCCTGCGGGTCTT...TGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGCCATTTTGAGCTGGTCCACGTaGAGACAGCGGCCACCCATG +
Preference number: 4 (lower is better)
Translates to: PLWRVTGRTRTTGAAAAILSWST*RQRPPM
Trigger: CATGGGTGGCCGCTGTCTGCACGTGGACCAGCTCAA...AATGGCAGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTGGGGGACGGGCCTCGTaGAATCCCGGGAGGAGAACT +
Preference number: 4 (lower is better)
Translates to: QEQQLPFLEHLLSERLYAGGRAS*NPGRRT
Trigger: AGTTCTCCTCCCGGGATTGCACGAGGCCCGTCCCCC...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp GTTTGGGGCAGTGAGGCAGGCAGATCTCACCCTCTACACCTCCCTACTGTGTTTACTTGGGGCCCTTCCTaGCCGGACCCCAGGATCACC +
Preference number: 4 (lower is better)
Translates to: VWGSEAGRSHPLHLPTVFTWGPS*PDPRIT
Trigger: GGTGATCCTGGGGTCCGGCCAGGAAGGGCCCCAAGT...AAACACAGTAGGGAGGTGTAGAGGGTGAGATCTGCCTGCCTCACTGCCCCAAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGCCATTGACAGAGGAGGTGTCTaGGGAGCAGGGAGTCCCATC +
Preference number: 4 (lower is better)
Translates to: PLWRVTGRTRTTGAAAAIDRGGV*GAGSPI
Trigger: GATGGGACTCCCTGCTCCCCAGACACCTCCTCTGTC...AATGGCAGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTTGCAGCGTCAAGGGCTaGGCCAGCGGCCCATGTCCA +
Preference number: 4 (lower is better)
Translates to: QEQQLPFLEHLLSERLYACSVKG*ASGPCP
Trigger: TGGACATGGGCCGCTGGCCCAGCCCTTGACGCTGCA...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGCCATTCGTTGCAGCCAGTCTTaGGGAGGAGGGCGTGGTGTT +
Preference number: 4 (lower is better)
Translates to: PLWRVTGRTRTTGAAAAIRCSQS*GGGRGV
Trigger: AACACCACGCCCTCCTCCCCAAGACTGGCTGCAACG...AATGGCAGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp TTAGCAGGAGGCAGTTGCAGAAGCCTGCTCATTCTCCCAGATGAGTCCGAGGCCCCTCCTTCCAGAGGCTaGAGGTGGAGTTCGGCCCCA +
Preference number: 4 (lower is better)
Translates to: LAGGSCRSLLILPDESEAPPSRG*RWSSAP
Trigger: TGGGGCCGAACTCCACCTCCAGCCTCTGGAAGGAGG...GGCCTCGGACTCATCTGGGAGAATGAGCAGGCTTCTGCAACTGCCTCCTGCTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp TGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAACAGGTCCTGCCGGGTaGACAGAATGGCTGTGTCAA +
Preference number: 4 (lower is better)
Translates to: CLAEPLWRVTGRTRTTGATGPAG*TEWLCQ
Trigger: TTGACACAGCCATTCTGTTCACCCGGCAGGACCTGT...TGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp GTTTGGGGCAGTGAGGCAGGCAGATCTCACCCTCTACACCTCCCTACTGTGTTTGTAGTAGTAGCCCAGTaGCCGGGCCTGGCAGGTGAG +
Preference number: 4 (lower is better)
Translates to: VWGSEAGRSHPLHLPTVFVVVAQ*PGLAGE
Trigger: CTCACCTGCCAGGCCCGGGCACTGGGCTACTACTAC...AAACACAGTAGGGAGGTGTAGAGGGTGAGATCTGCCTGCCTCACTGCCCCAAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp TGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGGTGAGTGCTTCGTCTaGCACATGGCATGGCCATTG +
Preference number: 4 (lower is better)
Translates to: CLAEPLWRVTGRTRTTGAGECFV*HMAWPL
Trigger: CAATGGCCATGCCATGTGCCAGACGAAGCACTCACC...TGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp TGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCATTGAAGTCCTTGAGCTaGTCCACGTGCAGACAGCGG +
Preference number: 4 (lower is better)
Translates to: CLAEPLWRVTGRTRTTGALKSLS*STCRQR
Trigger: CCGCTGTCTGCACGTGGACCAGCTCAAGGACTTCAA...TGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp TTAGCAGGAGGCAGTTGCAGAAGCCTGCTCATTCTCCCAGATGAGTCCGAGGCCTCCCGGGAGGAGAACTaGACACCACCCCCACAAGTC +
Preference number: 4 (lower is better)
Translates to: LAGGSCRSLLILPDESEASREEN*TPPPQV
Trigger: GACTTGTGGGGGTGGTGTCCAGTTCTCCTCCCGGGA...GGCCTCGGACTCATCTGGGAGAATGAGCAGGCTTCTGCAACTGCCTCCTGCTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp GTTTGGGGCAGTGAGGCAGGCAGATCTCACCCTCTACACCTCCCTACTGTGTTTCCCAGTGCCCGGGCCTaGCAGGTGAGTTTGCATTGG +
Preference number: 4 (lower is better)
Translates to: VWGSEAGRSHPLHLPTVFPSARA*QVSLHW
Trigger: CCAATGCAAACTCACCTGCCAGGCCCGGGCACTGGG...AAACACAGTAGGGAGGTGTAGAGGGTGAGATCTGCCTGCCTCACTGCCCCAAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp TTAGCAGGAGGCAGTTGCAGAAGCCTGCTCATTCTCCCAGATGAGTCCGAGGCCTGCCGTACAAGGATATaGGTGGCCCCCGCAGGGATC +
Preference number: 4 (lower is better)
Translates to: LAGGSCRSLLILPDESEACRTRI*VAPAGI
Trigger: GATCCCTGCGGGGGCCACCCATATCCTTGTACGGCA...GGCCTCGGACTCATCTGGGAGAATGAGCAGGCTTCTGCAACTGCCTCCTGCTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGCCATTGTGCACATGGGACCTTaGCTGCTGGCAGGACTCTTC +
Preference number: 4 (lower is better)
Translates to: PLWRVTGRTRTTGAAAAIVHMGP*LLAGLF
Trigger: GAAGAGTCCTGCCAGCAGCCAAGGTCCCATGTGCAC...AATGGCAGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp CCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGCCATTAGCAGCAGTGAAGGCTaGCTGGAGCCCATCATCTTC +
Preference number: 4 (lower is better)
Translates to: PLWRVTGRTRTTGAAAAISSSEG*LEPIIF
Trigger: GAAGATGATGGGCTCCAGTCAGCCTTCACTGCTGCT...AATGGCAGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp TTAGCAGGAGGCAGTTGCAGAAGCCTGCTCATTCTCCCAGATGAGTCCGAGGCCACATGGCATGGCCATTaGGGTGGCCAGAGCACCAGA +
Preference number: 4 (lower is better)
Translates to: LAGGSCRSLLILPDESEATWHGH*GGQSTR
Trigger: TCTGGTGCTCTGGCCACCTCAATGGCCATGCCATGT...GGCCTCGGACTCATCTGGGAGAATGAGCAGGCTTCTGCAACTGCCTCCTGCTAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp TTAGCAGGAGGCAGTTGCAGAAGCCTGCTCATTCTCCCAGATGAGTCCGAGGCCCCCCAGCCTCCAGCCTaGGGAACATTGAAGTCCTTG +
Preference number: 4 (lower is better)
Translates to: LAGGSCRSLLILPDESEAPQPPA*GTLKSL
Trigger: CAAGGACTTCAATGTTCCTCAGGCTGGAGGCTGGGG...GGCCTCGGACTCATCTGGGAGAATGAGCAGGCTTCTGCAACTGCCTCCTGCTAA
58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp GTGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCTCTTTTTGGAGCCAATaGTCCGGTCACAGCCAGCAT +
Preference number: 4 (lower is better)
Translates to: VPGRASVEGDWENKDHRSSFWSQ*SGHSQH
Trigger: ATGCTGGCTGTGACCGGATCATTGGCTCCAAAAAGA...GCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTCGCTGTAGCGCAAGCTaGCTGCCCCAGGAAGAACCA +
Preference number: 4 (lower is better)
Translates to: QEQQLPFLEHLLSERLYARCSAS*LPQEEP
Trigger: TGGTTCTTCCTGGGGCAGTCAGCTTGCGCTACAGCG...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp TTAGCAGGAGGCAGTTGCAGAAGCCTGCTCATTCTCCCAGATGAGTCCGAGGCCAAGACCCGCAGGGAGTaGCATCAGCCCAAGGTGAGT +
Preference number: 4 (lower is better)
Translates to: LAGGSCRSLLILPDESEAKTRRE*HQPKVS
Trigger: ACTCACCTTGGGCTGATGGCACTCCCTGCGGGTCTT...GGCCTCGGACTCATCTGGGAGAATGAGCAGGCTTCTGCAACTGCCTCCTGCTAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTGTCCCAGTGCAGAGATaGCACCGACTCCGGATCTCC +
Preference number: 4 (lower is better)
Translates to: QEQQLPFLEHLLSERLYAVPVQR*HRLRIS
Trigger: GGAGATCCGGAGTCGGTGGCATCTCTGCACTGGGAC...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp GCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGCAGTGAAGGCTGACTaGAGCCCATCATCTTCCACA +
Preference number: 4 (lower is better)
Translates to: AEPLWRVTGRTRTTGAAAAVKAD*SPSSST
Trigger: TGTGGAAGATGATGGGCTCCAGTCAGCCTTCACTGC...AGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp GTTTGGGGCAGTGAGGCAGGCAGATCTCACCCTCTACACCTCCCTACTGTGTTTCACCCCCACAAGTCCTaGAGCAGTCACCCCATGGTC +
Preference number: 4 (lower is better)
Translates to: VWGSEAGRSHPLHLPTVFHPHKS*SSHPMV
Trigger: GACCATGGGGTGACTGCTCCAGGACTTGTGGGGGTG...AAACACAGTAGGGAGGTGTAGAGGGTGAGATCTGCCTGCCTCACTGCCCCAAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTTGCCGTACAAGGATATaGGTGGCCCCCGCAGGGATC +
Preference number: 4 (lower is better)
Translates to: QEQQLPFLEHLLSERLYACRTRI*VAPAGI
Trigger: GATCCCTGCGGGGGCCACCCATATCCTTGTACGGCA...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGCCATTAGCGGCAAGCAGGGTTaGAATCTTTGCAGCCAGTGC +
Preference number: 4 (lower is better)
Translates to: PLWRVTGRTRTTGAAAAISGKQG*NLCSQC
Trigger: GCACTGGCTGCAAAGATTCCAACCCTGCTTGCCGCT...AATGGCAGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGCCATTAGCATCTCAGGTGCCTaGCCCAGGTACTGTACAGTC +
Preference number: 4 (lower is better)
Translates to: PLWRVTGRTRTTGAAAAISISGA*PRYCTV
Trigger: GACTGTACAGTACCTGGGCCAGGCACCTGAGATGCT...AATGGCAGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp TTAGCAGGAGGCAGTTGCAGAAGCCTGCTCATTCTCCCAGATGAGTCCGAGGCCTCAGCCCAAGGTGAGTaGTTCGTCTGGCACATGGCA +
Preference number: 4 (lower is better)
Translates to: LAGGSCRSLLILPDESEASAQGE*FVWHMA
Trigger: TGCCATGTGCCAGACGAAGCACTCACCTTGGGCTGA...GGCCTCGGACTCATCTGGGAGAATGAGCAGGCTTCTGCAACTGCCTCCTGCTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTACATGGTACCCGGGCTaGAGCTGGGATGGATTGAGG +
Preference number: 4 (lower is better)
Translates to: QEQQLPFLEHLLSERLYATWYPG*SWDGLR
Trigger: CCTCAATCCATCCCAGCTGCAGCCCGGGTACCATGT...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTGTCTGGCACATGGCATaGCCATTGAGGTGGCCAGAG +
Preference number: 4 (lower is better)
Translates to: QEQQLPFLEHLLSERLYAVWHMA*PLRWPE
Trigger: CTCTGGCCACCTCAATGGCCATGCCATGTGCCAGAC...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp TTAGCAGGAGGCAGTTGCAGAAGCCTGCTCATTCTCCCAGATGAGTCCGAGGCCAGCATCTCAGGTGCCTaGCCCAGGTACTGTACAGTC +
Preference number: 4 (lower is better)
Translates to: LAGGSCRSLLILPDESEASISGA*PRYCTV
Trigger: GACTGTACAGTACCTGGGCCAGGCACCTGAGATGCT...GGCCTCGGACTCATCTGGGAGAATGAGCAGGCTTCTGCAACTGCCTCCTGCTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTGTGCACATGGGACCTTaGCTGCTGGCAGGACTCTTC +
Preference number: 4 (lower is better)
Translates to: QEQQLPFLEHLLSERLYAVHMGP*LLAGLF
Trigger: GAAGAGTCCTGCCAGCAGCCAAGGTCCCATGTGCAC...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp GTTTGGGGCAGTGAGGCAGGCAGATCTCACCCTCTACACCTCCCTACTGTGTTTGCGTCACCACCAAGTTaGCAGGGTTTCGGATGCTTG +
Preference number: 4 (lower is better)
Translates to: VWGSEAGRSHPLHLPTVFASPPS*QGFGCL
Trigger: CAAGCATCCGAAACCCTGTCAACTTGGTGGTGACGC...AAACACAGTAGGGAGGTGTAGAGGGTGAGATCTGCCTGCCTCACTGCCCCAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp GTTTGGGGCAGTGAGGCAGGCAGATCTCACCCTCTACACCTCCCTACTGTGTTTACAGGTCCTGCCGGGTaGACAGAATGGCTGTGTCAA +
Preference number: 4 (lower is better)
Translates to: VWGSEAGRSHPLHLPTVFTGPAG*TEWLCQ
Trigger: TTGACACAGCCATTCTGTTCACCCGGCAGGACCTGT...AAACACAGTAGGGAGGTGTAGAGGGTGAGATCTGCCTGCCTCACTGCCCCAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp GTTTGGGGCAGTGAGGCAGGCAGATCTCACCCTCTACACCTCCCTACTGTGTTTCTGTGGACAATGGCTTaGGTCAGGACCGAAGGTCAG +
Preference number: 4 (lower is better)
Translates to: VWGSEAGRSHPLHLPTVFLWTMA*VRTEGQ
Trigger: CTGACCTTCGGTCCTGACTCAAGCCATTGTCCACAG...AAACACAGTAGGGAGGTGTAGAGGGTGAGATCTGCCTGCCTCACTGCCCCAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp AATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAAGGAGGGCGTGGTGTTaGAGGGACTGGCCGCGGGAC +
Preference number: 4 (lower is better)
Translates to: NKMLNPNSSSDPPAPGMPRRAWC*RDWPRD
Trigger: GTCCCGCGGCCAGTCCCTTCAACACCACGCCCTCCT...TGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTGTGCATTCTGTGGGTTaGCAGCCACCAGGACTTGCA +
Preference number: 4 (lower is better)
Translates to: QEQQLPFLEHLLSERLYAVHSVG*QPPGLA
Trigger: TGCAAGTCCTGGTGGCTGGCAACCCACAGAATGCAC...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTGTCAAACCCTCTACCTaGACCCCAGGGTCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: QEQQLPFLEHLLSERLYAVKPST*TPGSCS
Trigger: AGAACAGGACCCTGGGGTGCAGGTAGAGGGTTTGAC...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATGCTATTACATCATCCCTTGCTCCCCCGTCCCAGTaGAGAGATGCCACCGACTCC +
Preference number: 4 (lower is better)
Translates to: QVQIHQLLECQDAITSSLAPPSQ*RDATDS
Trigger: GGAGTCGGTGGCATCTCTGCACTGGGACGGGGGAGC...AAGGGATGATGTAATAGCATCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATGCTATTACATCATCCCTTACTTGGGGCCCTTCCTaGCCGGACCCCAGGATCACC +
Preference number: 4 (lower is better)
Translates to: QVQIHQLLECQDAITSSLTWGPS*PDPRIT
Trigger: GGTGATCCTGGGGTCCGGCCAGGAAGGGCCCCAAGT...AAGGGATGATGTAATAGCATCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp AATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGTCTGGGCGGCACTTaGCCCCACTTGGGGCCCTTC +
Preference number: 4 (lower is better)
Translates to: NKMLNPNSSSDPPAPGMPGLGGT*PHLGPF
Trigger: GAAGGGCCCCAAGTGGGGCCAAGTGCCGCCCAGACC...TGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp TTAGCAGGAGGCAGTTGCAGAAGCCTGCTCATTCTCCCAGATGAGTCCGAGGCCGCAGTGAAGGCTGACTaGAGCCCATCATCTTCCACA +
Preference number: 4 (lower is better)
Translates to: LAGGSCRSLLILPDESEAAVKAD*SPSSST
Trigger: TGTGGAAGATGATGGGCTCCAGTCAGCCTTCACTGC...GGCCTCGGACTCATCTGGGAGAATGAGCAGGCTTCTGCAACTGCCTCCTGCTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTTCTTCAGGGTCCACATaGGCCATGACAGGAGCCATG +
Preference number: 4 (lower is better)
Translates to: QEQQLPFLEHLLSERLYASSGST*AMTGAM
Trigger: CATGGCTCCTGTCATGGCCCATGTGGACCCTGAAGA...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp GTTTGGGGCAGTGAGGCAGGCAGATCTCACCCTCTACACCTCCCTACTGTGTTTGGCAGCTGTGGACAATaGCTTGAGTCAGGACCGAAG +
Preference number: 4 (lower is better)
Translates to: VWGSEAGRSHPLHLPTVFGSCGQ*LESGPK
Trigger: CTTCGGTCCTGACTCAAGCCATTGTCCACAGCTGCC...AAACACAGTAGGGAGGTGTAGAGGGTGAGATCTGCCTGCCTCACTGCCCCAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGAGGCAGCACAGGGCGGTaGCAGCTGTGGACAATGGCT +
Preference number: 4 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGGSTGR*QLWTMA
Trigger: AGCCATTGTCCACAGCTGCCACCGCCCTGTGCTGCC...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTCCAGTCCATGGGCCCTaGAAAGCTCTTGAAGAGGTC +
Preference number: 4 (lower is better)
Translates to: QEQQLPFLEHLLSERLYAPVHGP*KALEEV
Trigger: GACCTCTTCAAGAGCTTTCCAGGGCCCATGGACTGG...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGACCCAGTGCCCGGGCCTaGCAGGTGAGTTTGCATTGG +
Preference number: 4 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGPSARA*QVSLHW
Trigger: CCAATGCAAACTCACCTGCCAGGCCCGGGCACTGGG...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp ACTAAGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCAACCCATGCAGGCCTGTaGAGACCCGCAGGGAGTGCC +
Preference number: 4 (lower is better)
Translates to: TKLLFVSRELLGSVLVPSTHAGL*RPAGSA
Trigger: GGCACTCCCTGCGGGTCTTCACAGGCCTGCATGGGT...TGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCTTAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTAAGGAGGGCGTGGTGTTaGAGGGACTGGCCGCGGGAC +
Preference number: 4 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVRRAWC*RDWPRD
Trigger: GTCCCGCGGCCAGTCCCTTCAACACCACGCCCTCCT...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp ACTAAGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCAGCCAGGTGCAGAAGCTaGGTAGGGTCTGGGCGGCAC +
Preference number: 4 (lower is better)
Translates to: TKLLFVSRELLGSVLVPSARCRS*VGSGRH
Trigger: GTGCCGCCCAGACCCTACGCAGCTTCTGCACCTGGC...TGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCTTAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CACCTCTCCTGTTACAACGGCCTTTACTGTTTGAAAATCCTTGAGCACAGAGCAGGCCCCGCTGCCAGGTaGAGAAGCTGCGTAGGGTCT +
Preference number: 4 (lower is better)
Translates to: HLSCYNGLYCLKILEHRAGPAAR*RSCVGS
Trigger: AGACCCTACGCAGCTTCTGCACCTGGCAGCGGGGCC...TGCTCTGTGCTCAAGGATTTTCAAACAGTAAAGGCCGTTGTAACAGGAGAGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp GGTAATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGGGCCCCGCTGCCAGGTaGAGAAGCTGCGTAGGGTCT +
Preference number: 4 (lower is better)
Translates to: GNKMLNPNSSSDPPAPGMGPAAR*RSCVGS
Trigger: AGACCCTACGCAGCTTCTGCACCTGGCAGCGGGGCC...CATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp ACTAAGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCAGACAGCGGCCACCCATaGAGGCCTGTGAAGACCCGC +
Preference number: 4 (lower is better)
Translates to: TKLLFVSRELLGSVLVPSDSGHP*RPVKTR
Trigger: GCGGGTCTTCACAGGCCTGCATGGGTGGCCGCTGTC...TGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCTTAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp AATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGACAGCGGCCACCCATaGAGGCCTGTGAAGACCCGC +
Preference number: 4 (lower is better)
Translates to: NKMLNPNSSSDPPAPGMPDSGHP*RPVKTR
Trigger: GCGGGTCTTCACAGGCCTGCATGGGTGGCCGCTGTC...TGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGAGTCCCAGTGCAGAGATaGCACCGACTCCGGATCTCC +
Preference number: 4 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGVPVQR*HRLRIS
Trigger: GGAGATCCGGAGTCGGTGGCATCTCTGCACTGGGAC...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp ACTAAGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCAGCTCCCCCGTCCCAGTaGAGAGATGCCACCGACTCC +
Preference number: 4 (lower is better)
Translates to: TKLLFVSRELLGSVLVPSAPPSQ*RDATDS
Trigger: GGAGTCGGTGGCATCTCTGCACTGGGACGGGGGAGC...TGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCTTAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp GCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGGCTTGGAGTTATCATaGAGCATGTTGAAGACATGG +
Preference number: 4 (lower is better)
Translates to: AEPLWRVTGRTRTTGAAAGLELS*SMLKTW
Trigger: CCATGTCTTCAACATGCTCCATGATAACTCCAAGCC...AGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATGCTATTACATCATCCCTTGGCAGCACAGGGCGGTaGCAGCTGTGGACAATGGCT +
Preference number: 4 (lower is better)
Translates to: QVQIHQLLECQDAITSSLGSTGR*QLWTMA
Trigger: AGCCATTGTCCACAGCTGCCACCGCCCTGTGCTGCC...AAGGGATGATGTAATAGCATCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp CACACACACACACCACTCATATTTGTCACCAACACCCTGGATTTCATAGCTAGGCCCGGGCCTGGCAGGTaGGTTTGCATTGGTCTCGAG +
Preference number: 4 (lower is better)
Translates to: HTHTPLIFVTNTLDFIARPGPGR*VCIGLE
Trigger: CTCGAGACCAATGCAAACTCACCTGCCAGGCCCGGG...CCTAGCTATGAAATCCAGGGTGTTGGTGACAAATATGAGTGGTGTGTGTGTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATCCCAGAAGGAGCCTTaGCGGTGCACATGGGACCTT +
Preference number: 4 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGSQKEP*RCTWDL
Trigger: AAGGTCCCATGTGCACCGTCAAGGCTCCTTCTGGGA...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp GTTTGGGGCAGTGAGGCAGGCAGATCTCACCCTCTACACCTCCCTACTGTGTTTCCCTGTACCATGGAATaGTGCCATCTTGTCATCTGC +
Preference number: 4 (lower is better)
Translates to: VWGSEAGRSHPLHLPTVFPCTME*CHLVIC
Trigger: GCAGATGACAAGATGGCAGCATTCCATGGTACAGGG...AAACACAGTAGGGAGGTGTAGAGGGTGAGATCTGCCTGCCTCACTGCCCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp ATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGGCCAGGTGCAGAAGCTaGGTAGGGTCTGGGCGGCAC +
Preference number: 4 (lower is better)
Translates to: IFAKCLLCLLQVLTCLQKARCRS*VGSGRH
Trigger: GTGCCGCCCAGACCCTACGCAGCTTCTGCACCTGGC...CTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTCTTGTGGCCCCGCTGCCAGGTaGAGAAGCTGCGTAGGGTCT +
Preference number: 4 (lower is better)
Translates to: LFVSRELLGSVLVPSCSCGPAAR*RSCVGS
Trigger: AGACCCTACGCAGCTTCTGCACCTGGCAGCGGGGCC...ACAAGAACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp GGTAATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGGTGTTGAGGCCCCGCTaGCAGGTGCAGAAGCTGCGT +
Preference number: 4 (lower is better)
Translates to: GNKMLNPNSSSDPPAPGMVLRPR*QVQKLR
Trigger: ACGCAGCTTCTGCACCTGGCAGCGGGGCCTCAACAC...CATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CACACACACACACCACTCATATTTGTCACCAACACCCTGGATTTCATAGCTAGGGTGTTGAGGCCCCGCTaGCAGGTGCAGAAGCTGCGT +
Preference number: 4 (lower is better)
Translates to: HTHTPLIFVTNTLDFIARVLRPR*QVQKLR
Trigger: ACGCAGCTTCTGCACCTGGCAGCGGGGCCTCAACAC...CCTAGCTATGAAATCCAGGGTGTTGGTGACAAATATGAGTGGTGTGTGTGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp AGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTGTGTTGAGGCCCCGCTaGCAGGTGCAGAAGCTGCGT +
Preference number: 4 (lower is better)
Translates to: SSCLCPGSCWVLFLYLHVVLRPR*QVQKLR
Trigger: ACGCAGCTTCTGCACCTGGCAGCGGGGCCTCAACAC...AACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTAGGGGGACGGGCCTCGTaGAATCCCGGGAGGAGAACT +
Preference number: 4 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVGGRAS*NPGRRT
Trigger: AGTTCTCCTCCCGGGATTGCACGAGGCCCGTCCCCC...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CACACACACACACCACTCATATTTGTCACCAACACCCTGGATTTCATAGCTAGGGGCCCTCACAATACTTaGCACCGTTCCGGGGGACGG +
Preference number: 4 (lower is better)
Translates to: HTHTPLIFVTNTLDFIARGPHNT*HRSGGR
Trigger: CCGTCCCCCGGAACGGTGGCAAGTATTGTGAGGGCC...CCTAGCTATGAAATCCAGGGTGTTGGTGACAAATATGAGTGGTGTGTGTGTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CACCTCTCCTGTTACAACGGCCTTTACTGTTTGAAAATCCTTGAGCACAGAGCAGTAGTAGTAGCCCAGTaGCCGGGCCTGGCAGGTGAG +
Preference number: 4 (lower is better)
Translates to: HLSCYNGLYCLKILEHRAVVVAQ*PGLAGE
Trigger: CTCACCTGCCAGGCCCGGGCACTGGGCTACTACTAC...TGCTCTGTGCTCAAGGATTTTCAAACAGTAAAGGCCGTTGTAACAGGAGAGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGAATCTCTGCCCTGCGTTaGAGCCAGTCTTGGGGAGGA +
Preference number: 4 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGISALR*SQSWGG
Trigger: TCCTCCCCAAGACTGGCTGCAACGCAGGGCAGAGAT...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp GCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTTTTAACCCTGTACCATaGAATGCTGCCATCTTGTCA +
Preference number: 4 (lower is better)
Translates to: AEPLWRVTGRTRTTGAAAFNPVP*NAAILS
Trigger: TGACAAGATGGCAGCATTCCATGGTACAGGGTTAAA...AGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp TGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCATTTAACCCTGTACCATaGAATGCTGCCATCTTGTCA +
Preference number: 4 (lower is better)
Translates to: CLAEPLWRVTGRTRTTGAFNPVP*NAAILS
Trigger: TGACAAGATGGCAGCATTCCATGGTACAGGGTTAAA...TGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGCCATTATGGCTGTGTCAAAGTaGTCAGGATCTGAGTCGTTA +
Preference number: 4 (lower is better)
Translates to: PLWRVTGRTRTTGAAAAIMAVSK*SGSESL
Trigger: TAACGACTCAGATCCTGACCACTTTGACACAGCCAT...AATGGCAGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp GTGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCATTCAAGTTAGTGCATaGCTTGGAGTTATCATGGAG +
Preference number: 4 (lower is better)
Translates to: VPGRASVEGDWENKDHRSIQVSA*LGVIME
Trigger: CTCCATGATAACTCCAAGCCATGCACTAACTTGAAT...GCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATGCTATTACATCATCCCTTGCATGGCCATTGAGGTaGCCAGAGCACCAGAGGGCA +
Preference number: 4 (lower is better)
Translates to: QVQIHQLLECQDAITSSLAWPLR*PEHQRA
Trigger: TGCCCTCTGGTGCTCTGGCCACCTCAATGGCCATGC...AAGGGATGATGTAATAGCATCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CACACACACACACCACTCATATTTGTCACCAACACCCTGGATTTCATAGCTAGGCCCAGTGCCCGGGCCTaGCAGGTGAGTTTGCATTGG +
Preference number: 4 (lower is better)
Translates to: HTHTPLIFVTNTLDFIARPSARA*QVSLHW
Trigger: CCAATGCAAACTCACCTGCCAGGCCCGGGCACTGGG...CCTAGCTATGAAATCCAGGGTGTTGGTGACAAATATGAGTGGTGTGTGTGTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATGCTATTACATCATCCCTTGACAGAGGAGGTGTCTaGGGAGCAGGGAGTCCCATC +
Preference number: 4 (lower is better)
Translates to: QVQIHQLLECQDAITSSLDRGGV*GAGSPI
Trigger: GATGGGACTCCCTGCTCCCCAGACACCTCCTCTGTC...AAGGGATGATGTAATAGCATCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp GTTTGGGGCAGTGAGGCAGGCAGATCTCACCCTCTACACCTCCCTACTGTGTTTAAGAACCACATCTGTTaGGGAGGGCATCAGCGTGTA +
Preference number: 4 (lower is better)
Translates to: VWGSEAGRSHPLHLPTVFKNHIC*GGHQRV
Trigger: TACACGCTGATGCCCTCCCCAACAGATGTGGTTCTT...AAACACAGTAGGGAGGTGTAGAGGGTGAGATCTGCCTGCCTCACTGCCCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp ATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTGCAGCGTCAAGGGCTaGGCCAGCGGCCCATGTCCA +
Preference number: 4 (lower is better)
Translates to: IFAKCLLCLLQVLTCLQKCSVKG*ASGPCP
Trigger: TGGACATGGGCCGCTGGCCCAGCCCTTGACGCTGCA...CTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTGCCATTGAGCTTCTCTaGAAACACGATCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: QEQQLPFLEHLLSERLYAAIELL*KHDLLL
Trigger: GAGGAGGAGATCGTGTTTCCAGAGAAGCTCAATGGC...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp ACTAAGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCACCTCCTTCCAGAGGCTaGAGGTGGAGTTCGGCCCCA +
Preference number: 4 (lower is better)
Translates to: TKLLFVSRELLGSVLVPSPPSRG*RWSSAP
Trigger: TGGGGCCGAACTCCACCTCCAGCCTCTGGAAGGAGG...TGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCTTAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp CAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATGCTATTACATCATCCCTTACATGGCATGGCCATTaGGGTGGCCAGAGCACCAGA +
Preference number: 4 (lower is better)
Translates to: QVQIHQLLECQDAITSSLTWHGH*GGQSTR
Trigger: TCTGGTGCTCTGGCCACCTCAATGGCCATGCCATGT...AAGGGATGATGTAATAGCATCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp CTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTCTTGTCCCGGGCCTGGCAGGTaGGTTTGCATTGGTCTCGAG +
Preference number: 4 (lower is better)
Translates to: LFVSRELLGSVLVPSCSCPGPGR*VCIGLE
Trigger: CTCGAGACCAATGCAAACTCACCTGCCAGGCCCGGG...ACAAGAACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp ATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGCCCGGGCCTGGCAGGTaGGTTTGCATTGGTCTCGAG +
Preference number: 4 (lower is better)
Translates to: IFAKCLLCLLQVLTCLQKPGPGR*VCIGLE
Trigger: CTCGAGACCAATGCAAACTCACCTGCCAGGCCCGGG...CTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGAACTCCGGATCTCCATTaGTGGTGCCAGTCAGGTAGG +
Preference number: 4 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGTPDLH*WCQSGR
Trigger: CCTACCTGACTGGCACCATCAATGGAGATCCGGAGT...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp AGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTTTGAGCTGGTCCACGTaGAGACAGCGGCCACCCATG +
Preference number: 4 (lower is better)
Translates to: SSCLCPGSCWVLFLYLHVLSWST*RQRPPM
Trigger: CATGGGTGGCCGCTGTCTGCACGTGGACCAGCTCAA...AACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTCTTGTGGCCCTCACAATACTTaGCACCGTTCCGGGGGACGG +
Preference number: 4 (lower is better)
Translates to: LFVSRELLGSVLVPSCSCGPHNT*HRSGGR
Trigger: CCGTCCCCCGGAACGGTGGCAAGTATTGTGAGGGCC...ACAAGAACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTCTTGTGTAGTAGTAGCCCAGTaGCCGGGCCTGGCAGGTGAG +
Preference number: 4 (lower is better)
Translates to: LFVSRELLGSVLVPSCSCVVVAQ*PGLAGE
Trigger: CTCACCTGCCAGGCCCGGGCACTGGGCTACTACTAC...ACAAGAACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CACACACACACACCACTCATATTTGTCACCAACACCCTGGATTTCATAGCTAGGACATGGGACCTTGGCTaGTGGCAGGACTCTTCCGGC +
Preference number: 4 (lower is better)
Translates to: HTHTPLIFVTNTLDFIARTWDLG*WQDSSG
Trigger: GCCGGAAGAGTCCTGCCAGCAGCCAAGGTCCCATGT...CCTAGCTATGAAATCCAGGGTGTTGGTGACAAATATGAGTGGTGTGTGTGTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGAGGCAGCTGTGGACAATaGCTTGAGTCAGGACCGAAG +
Preference number: 4 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGGSCGQ*LESGPK
Trigger: CTTCGGTCCTGACTCAAGCCATTGTCCACAGCTGCC...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CACACACACACACCACTCATATTTGTCACCAACACCCTGGATTTCATAGCTAGGGCATGGCCATTGAGGTaGCCAGAGCACCAGAGGGCA +
Preference number: 4 (lower is better)
Translates to: HTHTPLIFVTNTLDFIARAWPLR*PEHQRA
Trigger: TGCCCTCTGGTGCTCTGGCCACCTCAATGGCCATGC...CCTAGCTATGAAATCCAGGGTGTTGGTGACAAATATGAGTGGTGTGTGTGTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp AATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCATCCCGGGAGGAGAACTaGACACCACCCCCACAAGTC +
Preference number: 4 (lower is better)
Translates to: NKMLNPNSSSDPPAPGMPSREEN*TPPPQV
Trigger: GACTTGTGGGGGTGGTGTCCAGTTCTCCTCCCGGGA...TGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp ACTAAGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCACGTTGCAGCCAGTCTTaGGGAGGAGGGCGTGGTGTT +
Preference number: 4 (lower is better)
Translates to: TKLLFVSRELLGSVLVPSRCSQS*GGGRGV
Trigger: AACACCACGCCCTCCTCCCCAAGACTGGCTGCAACG...TGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCTTAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CACACACACACACCACTCATATTTGTCACCAACACCCTGGATTTCATAGCTAGGCGTTGCAGCCAGTCTTaGGGAGGAGGGCGTGGTGTT +
Preference number: 4 (lower is better)
Translates to: HTHTPLIFVTNTLDFIARRCSQS*GGGRGV
Trigger: AACACCACGCCCTCCTCCCCAAGACTGGCTGCAACG...CCTAGCTATGAAATCCAGGGTGTTGGTGACAAATATGAGTGGTGTGTGTGTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CACCTCTCCTGTTACAACGGCCTTTACTGTTTGAAAATCCTTGAGCACAGAGCACAGTCAAGCCCCTCCTaGGATGCAAGCCCATCTGGG +
Preference number: 4 (lower is better)
Translates to: HLSCYNGLYCLKILEHRAQSSPS*DASPSG
Trigger: CCCAGATGGGCTTGCATCCCAGGAGGGGCTTGACTG...TGCTCTGTGCTCAAGGATTTTCAAACAGTAAAGGCCGTTGTAACAGGAGAGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp GGTAATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCAGTCAAGCCCCTCCTaGGATGCAAGCCCATCTGGG +
Preference number: 4 (lower is better)
Translates to: GNKMLNPNSSSDPPAPGMQSSPS*DASPSG
Trigger: CCCAGATGGGCTTGCATCCCAGGAGGGGCTTGACTG...CATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CACACACACACACCACTCATATTTGTCACCAACACCCTGGATTTCATAGCTAGGTGGGACCTTGGCTGCTaGCAGGACTCTTCCGGCGTA +
Preference number: 4 (lower is better)
Translates to: HTHTPLIFVTNTLDFIARWDLGC*QDSSGV
Trigger: TACGCCGGAAGAGTCCTGCCAGCAGCCAAGGTCCCA...CCTAGCTATGAAATCCAGGGTGTTGGTGACAAATATGAGTGGTGTGTGTGTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp CAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATGCTATTACATCATCCCTTGTTCATGAGCAGCAGTaGAGGCTGACTGGAGCCCAT +
Preference number: 4 (lower is better)
Translates to: QVQIHQLLECQDAITSSLVHEQQ*RLTGAH
Trigger: ATGGGCTCCAGTCAGCCTTCACTGCTGCTCATGAAC...AAGGGATGATGTAATAGCATCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp CAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATGCTATTACATCATCCCTTCTGTGGACAATGGCTTaGGTCAGGACCGAAGGTCAG +
Preference number: 4 (lower is better)
Translates to: QVQIHQLLECQDAITSSLLWTMA*VRTEGQ
Trigger: CTGACCTTCGGTCCTGACTCAAGCCATTGTCCACAG...AAGGGATGATGTAATAGCATCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGAGCGTGTATTCACCATTaGGGGCGTAAGAACCGTCAG +
Preference number: 4 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGACIHH*GRKNRQ
Trigger: CTGACGGTTCTTACGCCCTCAATGGTGAATACACGC...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp TTCATGTTCTTGTTGACTATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGTTCCGGCGTAGGATGTaGGCCCCCGGTCCCCCAGCA +
Preference number: 4 (lower is better)
Translates to: FMFLLTIFAKCLLCLLQVFRRRM*APGPPA
Trigger: TGCTGGGGGACCGGGGGCTCACATCCTACGCCGGAA...CACCTGCAGCAGACATAATAAACACTTGGCAAAGATAGTCAACAAGAACATGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTATTGAGCTGGTCCACGTaGAGACAGCGGCCACCCATG +
Preference number: 4 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVLSWST*RQRPPM
Trigger: CATGGGTGGCCGCTGTCTGCACGTGGACCAGCTCAA...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp ATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGGGCAGTTCTCCGTGTTaGAGGAGCGGAAGCGAGTCC +
Preference number: 4 (lower is better)
Translates to: IFAKCLLCLLQVLTCLQKGSSPC*RSGSES
Trigger: GGACTCGCTTCCGCTCCTGCAACACGGAGAACTGCC...CTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTCTTGTGGCAGTTCTCCGTGTTaGAGGAGCGGAAGCGAGTCC +
Preference number: 4 (lower is better)
Translates to: LFVSRELLGSVLVPSCSCGSSPC*RSGSES
Trigger: GGACTCGCTTCCGCTCCTGCAACACGGAGAACTGCC...ACAAGAACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CACCTCTCCTGTTACAACGGCCTTTACTGTTTGAAAATCCTTGAGCACAGAGCAATCTCTGCCCTGCGTTaGAGCCAGTCTTGGGGAGGA +
Preference number: 4 (lower is better)
Translates to: HLSCYNGLYCLKILEHRAISALR*SQSWGG
Trigger: TCCTCCCCAAGACTGGCTGCAACGCAGGGCAGAGAT...TGCTCTGTGCTCAAGGATTTTCAAACAGTAAAGGCCGTTGTAACAGGAGAGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATGCTATTACATCATCCCTTGTCAAACCCTCTACCTaGACCCCAGGGTCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: QVQIHQLLECQDAITSSLVKPST*TPGSCS
Trigger: AGAACAGGACCCTGGGGTGCAGGTAGAGGGTTTGAC...AAGGGATGATGTAATAGCATCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp GTTTGGGGCAGTGAGGCAGGCAGATCTCACCCTCTACACCTCCCTACTGTGTTTATGGCTGTGTCAAAGTaGTCAGGATCTGAGTCGTTA +
Preference number: 4 (lower is better)
Translates to: VWGSEAGRSHPLHLPTVFMAVSK*SGSESL
Trigger: TAACGACTCAGATCCTGACCACTTTGACACAGCCAT...AAACACAGTAGGGAGGTGTAGAGGGTGAGATCTGCCTGCCTCACTGCCCCAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTCTTGTCGGTCACAGCCAGCATaGATACAGCGGCCCTGGACA +
Preference number: 4 (lower is better)
Translates to: LFVSRELLGSVLVPSCSCRSQPA*IQRPWT
Trigger: TGTCCAGGGCCGCTGTATCCATGCTGGCTGTGACCG...ACAAGAACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTACGGTCACAGCCAGCATaGATACAGCGGCCCTGGACA +
Preference number: 4 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVRSQPA*IQRPWT
Trigger: TGTCCAGGGCCGCTGTATCCATGCTGGCTGTGACCG...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTATGCCGTACAAGGATATaGGTGGCCCCCGCAGGGATC +
Preference number: 4 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVCRTRI*VAPAGI
Trigger: GATCCCTGCGGGGGCCACCCATATCCTTGTACGGCA...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATGCTATTACATCATCCCTTAGCGGCAAGCAGGGTTaGAATCTTTGCAGCCAGTGC +
Preference number: 4 (lower is better)
Translates to: QVQIHQLLECQDAITSSLSGKQG*NLCSQC
Trigger: GCACTGGCTGCAAAGATTCCAACCCTGCTTGCCGCT...AAGGGATGATGTAATAGCATCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CACCTCTCCTGTTACAACGGCCTTTACTGTTTGAAAATCCTTGAGCACAGAGCATGGTTCTGCGGGAAATaGGACTCGGGCTCCCAGAAG +
Preference number: 4 (lower is better)
Translates to: HLSCYNGLYCLKILEHRAWFCGK*DSGSQK
Trigger: CTTCTGGGAGCCCGAGTCCCATTTCCCGCAGAACCA...TGCTCTGTGCTCAAGGATTTTCAAACAGTAAAGGCCGTTGTAACAGGAGAGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp AGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTTGGTTCTGCGGGAAATaGGACTCGGGCTCCCAGAAG +
Preference number: 4 (lower is better)
Translates to: SSCLCPGSCWVLFLYLHVWFCGK*DSGSQK
Trigger: CTTCTGGGAGCCCGAGTCCCATTTCCCGCAGAACCA...AACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp CACACACACACACCACTCATATTTGTCACCAACACCCTGGATTTCATAGCTAGGGCGTCACCACCAAGTTaGCAGGGTTTCGGATGCTTG +
Preference number: 4 (lower is better)
Translates to: HTHTPLIFVTNTLDFIARASPPS*QGFGCL
Trigger: CAAGCATCCGAAACCCTGTCAACTTGGTGGTGACGC...CCTAGCTATGAAATCCAGGGTGTTGGTGACAAATATGAGTGGTGTGTGTGTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp AGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTGCGTCACCACCAAGTTaGCAGGGTTTCGGATGCTTG +
Preference number: 4 (lower is better)
Translates to: SSCLCPGSCWVLFLYLHVASPPS*QGFGCL
Trigger: CAAGCATCCGAAACCCTGTCAACTTGGTGGTGACGC...AACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGAAAAGTGGTCAGGATCTaGGTCGTTAGGGGTGTTGAG +
Preference number: 4 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGKVVRI*VVRGVE
Trigger: CTCAACACCCCTAACGACTCAGATCCTGACCACTTT...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp AATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAAGCAGCAGTGAAGGCTaGCTGGAGCCCATCATCTTC +
Preference number: 4 (lower is better)
Translates to: NKMLNPNSSSDPPAPGMPSSSEG*LEPIIF
Trigger: GAAGATGATGGGCTCCAGTCAGCCTTCACTGCTGCT...TGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp AATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGTTCATGAGCAGCAGTaGAGGCTGACTGGAGCCCAT +
Preference number: 4 (lower is better)
Translates to: NKMLNPNSSSDPPAPGMPVHEQQ*RLTGAH
Trigger: ATGGGCTCCAGTCAGCCTTCACTGCTGCTCATGAAC...TGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp CACACACACACACCACTCATATTTGTCACCAACACCCTGGATTTCATAGCTAGGCTGTGGACAATGGCTTaGGTCAGGACCGAAGGTCAG +
Preference number: 4 (lower is better)
Translates to: HTHTPLIFVTNTLDFIARLWTMA*VRTEGQ
Trigger: CTGACCTTCGGTCCTGACTCAAGCCATTGTCCACAG...CCTAGCTATGAAATCCAGGGTGTTGGTGACAAATATGAGTGGTGTGTGTGTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTACCCCAGCCTCCAGCCTaGGGAACATTGAAGTCCTTG +
Preference number: 4 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVPQPPA*GTLKSL
Trigger: CAAGGACTTCAATGTTCCTCAGGCTGGAGGCTGGGG...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp CACCTCTCCTGTTACAACGGCCTTTACTGTTTGAAAATCCTTGAGCACAGAGCAACTCCGGATCTCCATTaGTGGTGCCAGTCAGGTAGG +
Preference number: 4 (lower is better)
Translates to: HLSCYNGLYCLKILEHRATPDLH*WCQSGR
Trigger: CCTACCTGACTGGCACCATCAATGGAGATCCGGAGT...TGCTCTGTGCTCAAGGATTTTCAAACAGTAAAGGCCGTTGTAACAGGAGAGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTATCCCAGAAGGAGCCTTaGCGGTGCACATGGGACCTT +
Preference number: 4 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVSQKEP*RCTWDL
Trigger: AAGGTCCCATGTGCACCGTCAAGGCTCCTTCTGGGA...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGACCCTGTACCATGGAATaGTGCCATCTTGTCATCTGC +
Preference number: 4 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGPCTME*CHLVIC
Trigger: GCAGATGACAAGATGGCAGCATTCCATGGTACAGGG...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp TTCATGTTCTTGTTGACTATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGGGGGGACGGGCCTCGTaGAATCCCGGGAGGAGAACT +
Preference number: 4 (lower is better)
Translates to: FMFLLTIFAKCLLCLLQVGGRAS*NPGRRT
Trigger: AGTTCTCCTCCCGGGATTGCACGAGGCCCGTCCCCC...CACCTGCAGCAGACATAATAAACACTTGGCAAAGATAGTCAACAAGAACATGAA
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp GGTAATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGGTAGCGCAAGCTGACTaGCCCAGGAAGAACCACATC +
Preference number: 4 (lower is better)
Translates to: GNKMLNPNSSSDPPAPGMVAQAD*PRKNHI
Trigger: GATGTGGTTCTTCCTGGGGCAGTCAGCTTGCGCTAC...CATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp ACTAAGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCAGTAGCGCAAGCTGACTaGCCCAGGAAGAACCACATC +
Preference number: 4 (lower is better)
Translates to: TKLLFVSRELLGSVLVPSVAQAD*PRKNHI
Trigger: GATGTGGTTCTTCCTGGGGCAGTCAGCTTGCGCTAC...TGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCTTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp GGTAATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGGTGCATTCTGTGGGTTaGCAGCCACCAGGACTTGCA +
Preference number: 4 (lower is better)
Translates to: GNKMLNPNSSSDPPAPGMVHSVG*QPPGLA
Trigger: TGCAAGTCCTGGTGGCTGGCAACCCACAGAATGCAC...CATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp AGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTGTGCATTCTGTGGGTTaGCAGCCACCAGGACTTGCA +
Preference number: 4 (lower is better)
Translates to: SSCLCPGSCWVLFLYLHVVHSVG*QPPGLA
Trigger: TGCAAGTCCTGGTGGCTGGCAACCCACAGAATGCAC...AACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTAAAGCCCCTCCTGGGATaGAAGCCCATCTGGGACATG +
Preference number: 4 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVKPLLG*KPIWDM
Trigger: CATGTCCCAGATGGGCTTGCATCCCAGGAGGGGCTT...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CACACACACACACCACTCATATTTGTCACCAACACCCTGGATTTCATAGCTAGGTCTTCAGGGTCCACATaGGCCATGACAGGAGCCATG +
Preference number: 4 (lower is better)
Translates to: HTHTPLIFVTNTLDFIARSSGST*AMTGAM
Trigger: CATGGCTCCTGTCATGGCCCATGTGGACCCTGAAGA...CCTAGCTATGAAATCCAGGGTGTTGGTGACAAATATGAGTGGTGTGTGTGTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp AGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTTCTTCAGGGTCCACATaGGCCATGACAGGAGCCATG +
Preference number: 4 (lower is better)
Translates to: SSCLCPGSCWVLFLYLHVSSGST*AMTGAM
Trigger: CATGGCTCCTGTCATGGCCCATGTGGACCCTGAAGA...AACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTCTTGTGGACCGAAGGTCAGTTaGCATTGGCGGTCAGCGTCA +
Preference number: 4 (lower is better)
Translates to: LFVSRELLGSVLVPSCSCGPKVS*HWRSAS
Trigger: TGACGCTGACCGCCAATGCCAACTGACCTTCGGTCC...ACAAGAACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp ATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGGGACCGAAGGTCAGTTaGCATTGGCGGTCAGCGTCA +
Preference number: 4 (lower is better)
Translates to: IFAKCLLCLLQVLTCLQKGPKVS*HWRSAS
Trigger: TGACGCTGACCGCCAATGCCAACTGACCTTCGGTCC...CTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp ACTAAGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCAGGCAGCTGTGGACAATaGCTTGAGTCAGGACCGAAG +
Preference number: 4 (lower is better)
Translates to: TKLLFVSRELLGSVLVPSGSCGQ*LESGPK
Trigger: CTTCGGTCCTGACTCAAGCCATTGTCCACAGCTGCC...TGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCTTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTAGTCTGGCACATGGCATaGCCATTGAGGTGGCCAGAG +
Preference number: 4 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVVWHMA*PLRWPE
Trigger: CTCTGGCCACCTCAATGGCCATGCCATGTGCCAGAC...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTCTTGTGTCTGGCACATGGCATaGCCATTGAGGTGGCCAGAG +
Preference number: 4 (lower is better)
Translates to: LFVSRELLGSVLVPSCSCVWHMA*PLRWPE
Trigger: CTCTGGCCACCTCAATGGCCATGCCATGTGCCAGAC...ACAAGAACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp AATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGTGAGTGCTTCGTCTaGCACATGGCATGGCCATTG +
Preference number: 4 (lower is better)
Translates to: NKMLNPNSSSDPPAPGMPGECFV*HMAWPL
Trigger: CAATGGCCATGCCATGTGCCAGACGAAGCACTCACC...TGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CACACACACACACCACTCATATTTGTCACCAACACCCTGGATTTCATAGCTAGGTTGAAGTCCTTGAGCTaGTCCACGTGCAGACAGCGG +
Preference number: 4 (lower is better)
Translates to: HTHTPLIFVTNTLDFIARLKSLS*STCRQR
Trigger: CCGCTGTCTGCACGTGGACCAGCTCAAGGACTTCAA...CCTAGCTATGAAATCCAGGGTGTTGGTGACAAATATGAGTGGTGTGTGTGTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CACCTCTCCTGTTACAACGGCCTTTACTGTTTGAAAATCCTTGAGCACAGAGCACAGGTGAGTTTGCATTaGTCTCGAGGGGCCACACCT +
Preference number: 4 (lower is better)
Translates to: HLSCYNGLYCLKILEHRAQVSLH*SRGATP
Trigger: AGGTGTGGCCCCTCGAGACCAATGCAAACTCACCTG...TGCTCTGTGCTCAAGGATTTTCAAACAGTAAAGGCCGTTGTAACAGGAGAGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGAAAGAACCACATCTGTTaGGGAGGGCATCAGCGTGTA +
Preference number: 4 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGKNHIC*GGHQRV
Trigger: TACACGCTGATGCCCTCCCCAACAGATGTGGTTCTT...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp GGTAATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCATCTCCCCAAAGGCTaGCAATCGGTACAGCAGCCT +
Preference number: 4 (lower is better)
Translates to: GNKMLNPNSSSDPPAPGMHLPKG*QSVQQP
Trigger: AGGCTGCTGTACCGATTGCCAGCCTTTGGGGAGATG...CATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CACACACACACACCACTCATATTTGTCACCAACACCCTGGATTTCATAGCTAGGCATCTCCCCAAAGGCTaGCAATCGGTACAGCAGCCT +
Preference number: 4 (lower is better)
Translates to: HTHTPLIFVTNTLDFIARHLPKG*QSVQQP
Trigger: AGGCTGCTGTACCGATTGCCAGCCTTTGGGGAGATG...CCTAGCTATGAAATCCAGGGTGTTGGTGACAAATATGAGTGGTGTGTGTGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp CTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTCTTGTACAGGTCCTGCCGGGTaGACAGAATGGCTGTGTCAA +
Preference number: 4 (lower is better)
Translates to: LFVSRELLGSVLVPSCSCTGPAG*TEWLCQ
Trigger: TTGACACAGCCATTCTGTTCACCCGGCAGGACCTGT...ACAAGAACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTAAGCAGCAGTGAAGGCTaGCTGGAGCCCATCATCTTC +
Preference number: 4 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVSSSEG*LEPIIF
Trigger: GAAGATGATGGGCTCCAGTCAGCCTTCACTGCTGCT...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp AGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTGCGTGTATTCACCATTaGGGGCGTAAGAACCGTCAG +
Preference number: 4 (lower is better)
Translates to: SSCLCPGSCWVLFLYLHVACIHH*GRKNRQ
Trigger: CTGACGGTTCTTACGCCCTCAATGGTGAATACACGC...AACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATGCTATTACATCATCCCTTCAGCGTCATAGTCCTTaGCAGGAAAAGTCGCTGGTA +
Preference number: 4 (lower is better)
Translates to: QVQIHQLLECQDAITSSLQRHSP*QEKSLV
Trigger: TACCAGCGACTTTTCCTGGCAAGGACTATGACGCTG...AAGGGATGATGTAATAGCATCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp ATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTCAGCCCAAGGTGAGTaGTTCGTCTGGCACATGGCA +
Preference number: 4 (lower is better)
Translates to: IFAKCLLCLLQVLTCLQKSAQGE*FVWHMA
Trigger: TGCCATGTGCCAGACGAAGCACTCACCTTGGGCTGA...CTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp TTCATGTTCTTGTTGACTATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGGGCCCTCACAATACTTaGCACCGTTCCGGGGGACGG +
Preference number: 4 (lower is better)
Translates to: FMFLLTIFAKCLLCLLQVGPHNT*HRSGGR
Trigger: CCGTCCCCCGGAACGGTGGCAAGTATTGTGAGGGCC...CACCTGCAGCAGACATAATAAACACTTGGCAAAGATAGTCAACAAGAACATGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTAGTAGCGCAAGCTGACTaGCCCAGGAAGAACCACATC +
Preference number: 4 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVVAQAD*PRKNHI
Trigger: GATGTGGTTCTTCCTGGGGCAGTCAGCTTGCGCTAC...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp AGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTGCAGTGAAGGCTGACTaGAGCCCATCATCTTCCACA +
Preference number: 4 (lower is better)
Translates to: SSCLCPGSCWVLFLYLHVAVKAD*SPSSST
Trigger: TGTGGAAGATGATGGGCTCCAGTCAGCCTTCACTGC...AACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTATTGAAGTCCTTGAGCTaGTCCACGTGCAGACAGCGG +
Preference number: 4 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVLKSLS*STCRQR
Trigger: CCGCTGTCTGCACGTGGACCAGCTCAAGGACTTCAA...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp ATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGCCAGTCCATGGGCCCTaGAAAGCTCTTGAAGAGGTC +
Preference number: 4 (lower is better)
Translates to: IFAKCLLCLLQVLTCLQKPVHGP*KALEEV
Trigger: GACCTCTTCAAGAGCTTTCCAGGGCCCATGGACTGG...CTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp ATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGCAGGTGAGTTTGCATTaGTCTCGAGGGGCCACACCT +
Preference number: 4 (lower is better)
Translates to: IFAKCLLCLLQVLTCLQKQVSLH*SRGATP
Trigger: AGGTGTGGCCCCTCGAGACCAATGCAAACTCACCTG...CTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTACAGGTGAGTTTGCATTaGTCTCGAGGGGCCACACCT +
Preference number: 4 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVQVSLH*SRGATP
Trigger: AGGTGTGGCCCCTCGAGACCAATGCAAACTCACCTG...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp GGTAATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGTCTTTTTGGAGCCAATaGTCCGGTCACAGCCAGCAT +
Preference number: 4 (lower is better)
Translates to: GNKMLNPNSSSDPPAPGMSFWSQ*SGHSQH
Trigger: ATGCTGGCTGTGACCGGATCATTGGCTCCAAAAAGA...CATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATTACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp CACACACACACACCACTCATATTTGTCACCAACACCCTGGATTTCATAGCTAGGTCTTTTTGGAGCCAATaGTCCGGTCACAGCCAGCAT +
Preference number: 4 (lower is better)
Translates to: HTHTPLIFVTNTLDFIARSFWSQ*SGHSQH
Trigger: ATGCTGGCTGTGACCGGATCATTGGCTCCAAAAAGA...CCTAGCTATGAAATCCAGGGTGTTGGTGACAAATATGAGTGGTGTGTGTGTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CACACACACACACCACTCATATTTGTCACCAACACCCTGGATTTCATAGCTAGGTGCCATCTTGTCATCTaGTACCACCAGTGTCTCCAC +
Preference number: 4 (lower is better)
Translates to: HTHTPLIFVTNTLDFIARCHLVI*YHQCLH
Trigger: GTGGAGACACTGGTGGTAGCAGATGACAAGATGGCA...CCTAGCTATGAAATCCAGGGTGTTGGTGACAAATATGAGTGGTGTGTGTGTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CACCTCTCCTGTTACAACGGCCTTTACTGTTTGAAAATCCTTGAGCACAGAGCATGCCATCTTGTCATCTaGTACCACCAGTGTCTCCAC +
Preference number: 4 (lower is better)
Translates to: HLSCYNGLYCLKILEHRACHLVI*YHQCLH
Trigger: GTGGAGACACTGGTGGTAGCAGATGACAAGATGGCA...TGCTCTGTGCTCAAGGATTTTCAAACAGTAAAGGCCGTTGTAACAGGAGAGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp ACTAAGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCACAGCGTCATAGTCCTTaGCAGGAAAAGTCGCTGGTA +
Preference number: 4 (lower is better)
Translates to: TKLLFVSRELLGSVLVPSQRHSP*QEKSLV
Trigger: TACCAGCGACTTTTCCTGGCAAGGACTATGACGCTG...TGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCTTAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp AATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCACAGCGTCATAGTCCTTaGCAGGAAAAGTCGCTGGTA +
Preference number: 4 (lower is better)
Translates to: NKMLNPNSSSDPPAPGMPQRHSP*QEKSLV
Trigger: TACCAGCGACTTTTCCTGGCAAGGACTATGACGCTG...TGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp TTCATGTTCTTGTTGACTATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGACATGGGACCTTGGCTaGTGGCAGGACTCTTCCGGC +
Preference number: 4 (lower is better)
Translates to: FMFLLTIFAKCLLCLLQVTWDLG*WQDSSG
Trigger: GCCGGAAGAGTCCTGCCAGCAGCCAAGGTCCCATGT...CACCTGCAGCAGACATAATAAACACTTGGCAAAGATAGTCAACAAGAACATGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGAGGCTTGGAGTTATCATaGAGCATGTTGAAGACATGG +
Preference number: 4 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGGLELS*SMLKTW
Trigger: CCATGTCTTCAACATGCTCCATGATAACTCCAAGCC...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp TTCATGTTCTTGTTGACTATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCACCCCCACAAGTCCTaGAGCAGTCACCCCATGGTC +
Preference number: 4 (lower is better)
Translates to: FMFLLTIFAKCLLCLLQVHPHKS*SSHPMV
Trigger: GACCATGGGGTGACTGCTCCAGGACTTGTGGGGGTG...CACCTGCAGCAGACATAATAAACACTTGGCAAAGATAGTCAACAAGAACATGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp TTCATGTTCTTGTTGACTATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGTCCCGGGAGGAGAACTaGACACCACCCCCACAAGTC +
Preference number: 4 (lower is better)
Translates to: FMFLLTIFAKCLLCLLQVSREEN*TPPPQV
Trigger: GACTTGTGGGGGTGGTGTCCAGTTCTCCTCCCGGGA...CACCTGCAGCAGACATAATAAACACTTGGCAAAGATAGTCAACAAGAACATGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp AGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTAAGAACCACATCTGTTaGGGAGGGCATCAGCGTGTA +
Preference number: 4 (lower is better)
Translates to: SSCLCPGSCWVLFLYLHVKNHIC*GGHQRV
Trigger: TACACGCTGATGCCCTCCCCAACAGATGTGGTTCTT...AACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp GGTAATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGGCCATTGAGCTTCTCTaGAAACACGATCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: GNKMLNPNSSSDPPAPGMAIELL*KHDLLL
Trigger: GAGGAGGAGATCGTGTTTCCAGAGAAGCTCAATGGC...CATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATTACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp CAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATGCTATTACATCATCCCTTTATCATGGAGCATGTTaGAGACATGGCCCAGTTCAT +
Preference number: 4 (lower is better)
Translates to: QVQIHQLLECQDAITSSLYHGAC*RHGPVH
Trigger: ATGAACTGGGCCATGTCTTCAACATGCTCCATGATA...AAGGGATGATGTAATAGCATCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTCTTGTCCCTGTACCATGGAATaGTGCCATCTTGTCATCTGC +
Preference number: 4 (lower is better)
Translates to: LFVSRELLGSVLVPSCSCPCTME*CHLVIC
Trigger: GCAGATGACAAGATGGCAGCATTCCATGGTACAGGG...ACAAGAACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp AATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCACCCCGCCGCACACCATaGACTTGTCAAATTTCTTTT +
Preference number: 4 (lower is better)
Translates to: NKMLNPNSSSDPPAPGMPPRRTP*TCQISF
Trigger: AAAAGAAATTTGACAAGTGCATGGTGTGCGGCGGGG...TGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp TTCATGTTCTTGTTGACTATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGGGACCGAAGGTCAGTTaGCATTGGCGGTCAGCGTCA +
Preference number: 4 (lower is better)
Translates to: FMFLLTIFAKCLLCLLQVGPKVS*HWRSAS
Trigger: TGACGCTGACCGCCAATGCCAACTGACCTTCGGTCC...CACCTGCAGCAGACATAATAAACACTTGGCAAAGATAGTCAACAAGAACATGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp GGTAATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGTATCATGGAGCATGTTaGAGACATGGCCCAGTTCAT +
Preference number: 4 (lower is better)
Translates to: GNKMLNPNSSSDPPAPGMYHGAC*RHGPVH
Trigger: ATGAACTGGGCCATGTCTTCAACATGCTCCATGATA...CATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATTACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp ACTAAGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTACCATGGAATGCTaGCATCTTGTCATCTGCTAC +
Preference number: 4 (lower is better)
Translates to: TKLLFVSRELLGSVLVPSCTMEC*HLVICY
Trigger: GTAGCAGATGACAAGATGGCAGCATTCCATGGTACA...TGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCTTAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp GGTAATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGTGTACCATGGAATGCTaGCATCTTGTCATCTGCTAC +
Preference number: 4 (lower is better)
Translates to: GNKMLNPNSSSDPPAPGMCTMEC*HLVICY
Trigger: GTAGCAGATGACAAGATGGCAGCATTCCATGGTACA...CATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATTACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp TTCATGTTCTTGTTGACTATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGTCAGCCCAAGGTGAGTaGTTCGTCTGGCACATGGCA +
Preference number: 4 (lower is better)
Translates to: FMFLLTIFAKCLLCLLQVSAQGE*FVWHMA
Trigger: TGCCATGTGCCAGACGAAGCACTCACCTTGGGCTGA...CACCTGCAGCAGACATAATAAACACTTGGCAAAGATAGTCAACAAGAACATGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTACCCCGCCGCACACCATaGACTTGTCAAATTTCTTTT +
Preference number: 4 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVPRRTP*TCQISF
Trigger: AAAAGAAATTTGACAAGTGCATGGTGTGCGGCGGGG...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp AATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAATGGCTGTGTCAAAGTaGTCAGGATCTGAGTCGTTA +
Preference number: 4 (lower is better)
Translates to: NKMLNPNSSSDPPAPGMPMAVSK*SGSESL
Trigger: TAACGACTCAGATCCTGACCACTTTGACACAGCCAT...TGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR TCA 90 bp ATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTATCATGGAGCATGTTaGAGACATGGCCCAGTTCAT +
Preference number: 4 (lower is better)
Translates to: IFAKCLLCLLQVLTCLQKYHGAC*RHGPVH
Trigger: ATGAACTGGGCCATGTCTTCAACATGCTCCATGATA...CTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp TTCATGTTCTTGTTGACTATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGTGCCATCTTGTCATCTaGTACCACCAGTGTCTCCAC +
Preference number: 4 (lower is better)
Translates to: FMFLLTIFAKCLLCLLQVCHLVI*YHQCLH
Trigger: GTGGAGACACTGGTGGTAGCAGATGACAAGATGGCA...CACCTGCAGCAGACATAATAAACACTTGGCAAAGATAGTCAACAAGAACATGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTATTTAACCCTGTACCATaGAATGCTGCCATCTTGTCA +
Preference number: 4 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVFNPVP*NAAILS
Trigger: TGACAAGATGGCAGCATTCCATGGTACAGGGTTAAA...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp AGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTATTCAAGTTAGTGCATaGCTTGGAGTTATCATGGAG +
Preference number: 4 (lower is better)
Translates to: SSCLCPGSCWVLFLYLHVIQVSA*LGVIME
Trigger: CTCCATGATAACTCCAAGCCATGCACTAACTTGAAT...AACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR GCA 90 bp TTCATGTTCTTGTTGACTATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCCCCGCCGCACACCATaGACTTGTCAAATTTCTTTT +
Preference number: 4 (lower is better)
Translates to: FMFLLTIFAKCLLCLLQVPRRTP*TCQISF
Trigger: AAAAGAAATTTGACAAGTGCATGGTGTGCGGCGGGG...CACCTGCAGCAGACATAATAAACACTTGGCAAAGATAGTCAACAAGAACATGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp ATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGATTCAAGTTAGTGCATaGCTTGGAGTTATCATGGAG +
Preference number: 4 (lower is better)
Translates to: IFAKCLLCLLQVLTCLQKIQVSA*LGVIME
Trigger: CTCCATGATAACTCCAAGCCATGCACTAACTTGAAT...CTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
3UTR CAA 72 bp ATTCTTACAACTAAGCTCCTGTTTGTGTCCAGGGAGTaGTTGGGTTCTGTTCTTGTACCTTCATGTTCTTGT +
Preference number: 4 (lower is better)
Translates to: ILTTKLLFVSRE*LGSVLVPSCSC
Trigger: ACAAGAACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCTTAGTTGTAAGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CCA 90 bp TTCATGTTCTTGTTGACTATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGGGCTTGGAGTTATCATaGAGCATGTTGAAGACATGG +
Preference number: 4 (lower is better)
Translates to: FMFLLTIFAKCLLCLLQVGLELS*SMLKTW
Trigger: CCATGTCTTCAACATGCTCCATGATAACTCCAAGCC...CACCTGCAGCAGACATAATAAACACTTGGCAAAGATAGTCAACAAGAACATGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CCA 90 bp CAGGTGCAGAAGCTGCGTAGGGTCTGGGCGGCACTTGGCCCCACTTaGGGCCCTTCCTGGCCGGACCCCAGGATCACCAGGCGCGTCACC +
Preference number: 5 (lower is better)
Translates to: QVQKLRRVWAALGPT*GPSWPDPRITRRVT
Trigger: GGTGACGCGCCTGGTGATCCTGGGGTCCGGCCAGGAAGGGCCCCAAGTGGGGCCAAGTGCCGCCCAGACCCTACGCAGCTTCTGCACCTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 90 bp CCGTGTTGCAGGAGCGGAAGCGAGTCCGGCGGCCCTCACAATACTTaGCACCGTTCCGGGGGACGGGCCTCGTGCAATCCCGGGAGGAGA +
Preference number: 5 (lower is better)
Translates to: PCCRSGSESGGPHNT*HRSGGRASCNPGRR
Trigger: TCTCCTCCCGGGATTGCACGAGGCCCGTCCCCCGGAACGGTGGCAAGTATTGTGAGGGCCGCCGGACTCGCTTCCGCTCCTGCAACACGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 90 bp CAGCGTCAAGGGCTGGGCCAGCGGCCCATGTCCAGACAGTGTCTCTaGGGCTGCTGTGGCTCCGCTGTAGCGCAAGCTGACTGCCCCAGG +
Preference number: 5 (lower is better)
Translates to: QRQGLGQRPMSRQCL*GCCGSAVAQADCPR
Trigger: CCTGGGGCAGTCAGCTTGCGCTACAGCGGAGCCACAGCAGCCTCAGAGACACTGTCTGGACATGGGCCGCTGGCCCAGCCCTTGACGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 90 bp GGCGGCCCTCACAATACTTGCCACCGTTCCGGGGGACGGGCCTCGTaGAATCCCGGGAGGAGAACTGGACACCACCCCCACAAGTCCTGG +
Preference number: 5 (lower is better)
Translates to: GGPHNTCHRSGGRAS*NPGRRTGHHPHKSW
Trigger: CCAGGACTTGTGGGGGTGGTGTCCAGTTCTCCTCCCGGGATTGCACGAGGCCCGTCCCCCGGAACGGTGGCAAGTATTGTGAGGGCCGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp GTGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCGGCACTTGGCCCCACTaGGGGCCCTTCCTGGCCGGA +
Preference number: 5 (lower is better)
Translates to: VPGRASVEGDWENKDHRSGTWPH*GPFLAG
Trigger: TCCGGCCAGGAAGGGCCCCAAGTGGGGCCAAGTGCC...GCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp GTGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCGAGGAGGGCGTGGTGTaGAAGGGACTGGCCGCGGGA +
Preference number: 5 (lower is better)
Translates to: VPGRASVEGDWENKDHRSEEGVV*KGLAAG
Trigger: TCCCGCGGCCAGTCCCTTCAACACCACGCCCTCCTC...GCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 90 bp CACATGGGACCTTGGCTGCTGGCAGGACTCTTCCGGCGTAGGATGTaGGCCCCCGGTCCCCCAGCAGAGTTAAGGGCGCCTCCTTCCAGA +
Preference number: 5 (lower is better)
Translates to: HMGPWLLAGLFRRRM*APGPPAELRAPPSR
Trigger: TCTGGAAGGAGGCGCCCTTAACTCTGCTGGGGGACCGGGGGCTCACATCCTACGCCGGAAGAGTCCTGCCAGCAGCCAAGGTCCCATGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 90 bp GCAGACAGCGGCCACCCATGCAGGCCTGTGAAGACCCGCAGGGAGTaGCATCAGCCCAAGGTGAGTGCTTCGTCTGGCACATGGCATGGC +
Preference number: 5 (lower is better)
Translates to: ADSGHPCRPVKTRRE*HQPKVSASSGTWHG
Trigger: GCCATGCCATGTGCCAGACGAAGCACTCACCTTGGGCTGATGGCACTCCCTGCGGGTCTTCACAGGCCTGCATGGGTGGCCGCTGTCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 90 bp CATCAGCCCAAGGTGAGTGCTTCGTCTGGCACATGGCATGGCCATTaGGGTGGCCAGAGCACCAGAGGGCAGCACAGGGCGGTGGCAGCT +
Preference number: 5 (lower is better)
Translates to: HQPKVSASSGTWHGH*GGQSTRGQHRAVAA
Trigger: AGCTGCCACCGCCCTGTGCTGCCCTCTGGTGCTCTGGCCACCTCAATGGCCATGCCATGTGCCAGACGAAGCACTCACCTTGGGCTGATG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 90 bp CTCTGCCCTGCGTTGCAGCCAGTCTTGGGGAGGAGGGCGTGGTGTTaGAGGGACTGGCCGCGGGACAAAGAAACTGTACCGCAGACGTGC +
Preference number: 5 (lower is better)
Translates to: LCPALQPVLGRRAWC*RDWPRDKETVPQTC
Trigger: GCACGTCTGCGGTACAGTTTCTTTGTCCCGCGGCCAGTCCCTTCAACACCACGCCCTCCTCCCCAAGACTGGCTGCAACGCAGGGCAGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 90 bp GCTTGGTTCTGCGGGAAATGGGACTCGGGCTCCCAGAAGGAGCCTTaGCGGTGCACATGGGACCTTGGCTGCTGGCAGGACTCTTCCGGC +
Preference number: 5 (lower is better)
Translates to: AWFCGKWDSGSQKEP*RCTWDLGCWQDSSG
Trigger: GCCGGAAGAGTCCTGCCAGCAGCCAAGGTCCCATGTGCACCGTCAAGGCTCCTTCTGGGAGCCCGAGTCCCATTTCCCGCAGAACCAAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 90 bp TCAAAGTGGTCAGGATCTGAGTCGTTAGGGGTGTTGAGGCCCCGCTaGCAGGTGCAGAAGCTGCGTAGGGTCTGGGCGGCACTTGGCCCC +
Preference number: 5 (lower is better)
Translates to: SKWSGSESLGVLRPR*QVQKLRRVWAALGP
Trigger: GGGGCCAAGTGCCGCCCAGACCCTACGCAGCTTCTGCACCTGGCAGCGGGGCCTCAACACCCCTAACGACTCAGATCCTGACCACTTTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 90 bp CTGTACCGCAGACGTGCATTCTGTGGGTTGCCAGCCACCAGGACTTaGAGCGTCAAGGGCTGGGCCAGCGGCCCATGTCCAGACAGTGTC +
Preference number: 5 (lower is better)
Translates to: LYRRRAFCGLPATRT*SVKGWASGPCPDSV
Trigger: GACACTGTCTGGACATGGGCCGCTGGCCCAGCCCTTGACGCTGCAAGTCCTGGTGGCTGGCAACCCACAGAATGCACGTCTGCGGTACAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CCA 90 bp CCAGAGCACCAGAGGGCAGCACAGGGCGGTGGCAGCTGTGGACAATaGCTTGAGTCAGGACCGAAGGTCAGTTGGCATTGGCGGTCAGCG +
Preference number: 5 (lower is better)
Translates to: PEHQRAAQGGGSCGQ*LESGPKVSWHWRSA
Trigger: CGCTGACCGCCAATGCCAACTGACCTTCGGTCCTGACTCAAGCCATTGTCCACAGCTGCCACCGCCCTGTGCTGCCCTCTGGTGCTCTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CCA 90 bp GCATTCTGTGGGTTGCCAGCCACCAGGACTTGCAGCGTCAAGGGCTaGGCCAGCGGCCCATGTCCAGACAGTGTCTCTGAGGCTGCTGTG +
Preference number: 5 (lower is better)
Translates to: AFCGLPATRTCSVKG*ASGPCPDSVSEAAV
Trigger: CACAGCAGCCTCAGAGACACTGTCTGGACATGGGCCGCTGGCCCAGCCCTTGACGCTGCAAGTCCTGGTGGCTGGCAACCCACAGAATGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp TTAGCAGGAGGCAGTTGCAGAAGCCTGCTCATTCTCCCAGATGAGTCCGAGGCCGGGTCTGGGCGGCACTaGGCCCCACTTGGGGCCCTT +
Preference number: 5 (lower is better)
Translates to: LAGGSCRSLLILPDESEAGSGRH*APLGAL
Trigger: AAGGGCCCCAAGTGGGGCCAAGTGCCGCCCAGACCC...GGCCTCGGACTCATCTGGGAGAATGAGCAGGCTTCTGCAACTGCCTCCTGCTAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp GCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTCGGCCCTCACAATACTaGCCACCGTTCCGGGGGACG +
Preference number: 5 (lower is better)
Translates to: AEPLWRVTGRTRTTGAAARPSQY*PPFRGT
Trigger: CGTCCCCCGGAACGGTGGCAAGTATTGTGAGGGCCG...AGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp GTGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCGCCTGGCAGGTGAGTTaGCATTGGTCTCGAGGGGCC +
Preference number: 5 (lower is better)
Translates to: VPGRASVEGDWENKDHRSAWQVS*HWSRGA
Trigger: GGCCCCTCGAGACCAATGCAAACTCACCTGCCAGGC...GCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 90 bp GGGGCTCCAATACGTAGTAGTAGCCCAGTGCCCGGGCCTGGCAGGTaGGTTTGCATTGGTCTCGAGGGGCCACACCTGTGTAGCGCGGAA +
Preference number: 5 (lower is better)
Translates to: GAPIRSSSPVPGPGR*VCIGLEGPHLCSAE
Trigger: TTCCGCGCTACACAGGTGTGGCCCCTCGAGACCAATGCAAACTCACCTGCCAGGCCCGGGCACTGGGCTACTACTACGTATTGGAGCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 90 bp GACAGGAGGAAGGCCAGCAGCAGCAGCCTCCGCCACTGCACAGTGTaGAGCGGCAAGCAGGGTTGGAATCTTTGCAGCCAGTGCCCAGTC +
Preference number: 5 (lower is better)
Translates to: DRRKASSSSLRHCTV*SGKQGWNLCSQCPV
Trigger: GACTGGGCACTGGCTGCAAAGATTCCAACCCTGCTTGCCGCTTCACACTGTGCAGTGGCGGAGGCTGCTGCTGCTGGCCTTCCTCCTGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 90 bp GCAGCCTGGCAGGAACGCCTGATCCAGGTAGGATGCTACTGCCATTaGGCTTCTCTGGAAACACGATCTCCTCCTCCCGGGGGAGGGGGC +
Preference number: 5 (lower is better)
Translates to: AAWQERLIQVGCYCH*ASLETRSPPPGGGG
Trigger: GCCCCCTCCCCCGGGAGGAGGAGATCGTGTTTCCAGAGAAGCTCAATGGCAGTAGCATCCTACCTGGATCAGGCGTTCCTGCCAGGCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 90 bp CAGGCCTGTGAAGACCCGCAGGGAGTGCCATCAGCCCAAGGTGAGTaGTTCGTCTGGCACATGGCATGGCCATTGAGGTGGCCAGAGCAC +
Preference number: 5 (lower is better)
Translates to: QACEDPQGVPSAQGE*FVWHMAWPLRWPEH
Trigger: GTGCTCTGGCCACCTCAATGGCCATGCCATGTGCCAGACGAAGCACTCACCTTGGGCTGATGGCACTCCCTGCGGGTCTTCACAGGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 90 bp GGCCTGCCCAGGGACGCTTCCGAAGGATCTTCAGTATCTCTGCCCTaGGTTGCAGCCAGTCTTGGGGAGGAGGGCGTGGTGTTGAAGGGA +
Preference number: 5 (lower is better)
Translates to: GLPRDASEGSSVSLP*VAASLGEEGVVLKG
Trigger: TCCCTTCAACACCACGCCCTCCTCCCCAAGACTGGCTGCAACGCAGGGCAGAGATACTGAAGATCCTTCGGAAGCGTCCCTGGGCAGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 90 bp GGTTGGAATCTTTGCAGCCAGTGCCCAGTCAAGCCCCTCCTGGGATaGAAGCCCATCTGGGACATGGTACCCGGGCTGCAGCTGGGATGG +
Preference number: 5 (lower is better)
Translates to: GWNLCSQCPVKPLLG*KPIWDMVPGLQLGW
Trigger: CCATCCCAGCTGCAGCCCGGGTACCATGTCCCAGATGGGCTTGCATCCCAGGAGGGGCTTGACTGGGCACTGGCTGCAAAGATTCCAACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219033.2
CDS CCA 90 bp AGCAGGGTTGGAATCTTTGCAGCCAGTGCCCAGTCAAGCCCCTCCTaGGATGCAAGCCCATCTGGGACATGGTACCCGGGCTGCAGCTGG +
Preference number: 5 (lower is better)
Translates to: SRVGIFAASAQSSPS*DASPSGTWYPGCSW
Trigger: CCAGCTGCAGCCCGGGTACCATGTCCCAGATGGGCTTGCATCCCAGGAGGGGCTTGACTGGGCACTGGCTGCAAAGATTCCAACCCTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTGGCACTTGGCCCCACTaGGGGCCCTTCCTGGCCGGA +
Preference number: 5 (lower is better)
Translates to: QEQQLPFLEHLLSERLYAGTWPH*GPFLAG
Trigger: TCCGGCCAGGAAGGGCCCCAAGTGGGGCCAAGTGCC...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp GTGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGGACCGAAGGTCAGTaGGCATTGGCGGTCAGCGTC +
Preference number: 5 (lower is better)
Translates to: VPGRASVEGDWENKDHRSRTEGQ*ALAVSV
Trigger: GACGCTGACCGCCAATGCCAACTGACCTTCGGTCCT...GCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp CCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGCCATTCGGCCCTCACAATACTaGCCACCGTTCCGGGGGACG +
Preference number: 5 (lower is better)
Translates to: PLWRVTGRTRTTGAAAAIRPSQY*PPFRGT
Trigger: CGTCCCCCGGAACGGTGGCAAGTATTGTGAGGGCCG...AATGGCAGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp GCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGCCTGGCAGGTGAGTTaGCATTGGTCTCGAGGGGCC +
Preference number: 5 (lower is better)
Translates to: AEPLWRVTGRTRTTGAAAAWQVS*HWSRGA
Trigger: GGCCCCTCGAGACCAATGCAAACTCACCTGCCAGGC...AGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp CCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGCCATTGCGTTGCAGCCAGTCTaGGGGAGGAGGGCGTGGTGT +
Preference number: 5 (lower is better)
Translates to: PLWRVTGRTRTTGAAAAIALQPV*GRRAWC
Trigger: ACACCACGCCCTCCTCCCCAAGACTGGCTGCAACGC...AATGGCAGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 90 bp GCACCAGAGGGCAGCACAGGGCGGTGGCAGCTGTGGACAATGGCTTaGGTCAGGACCGAAGGTCAGTTGGCATTGGCGGTCAGCGTCATA +
Preference number: 5 (lower is better)
Translates to: APEGSTGRWQLWTMA*VRTEGQLALAVSVI
Trigger: TATGACGCTGACCGCCAATGCCAACTGACCTTCGGTCCTGACTCAAGCCATTGTCCACAGCTGCCACCGCCCTGTGCTGCCCTCTGGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 90 bp CTTCACGGAAGGTCAATGCTGAGCCGTGTGGGCAGTTCTCCGTGTTaGAGGAGCGGAAGCGAGTCCGGCGGCCCTCACAATACTTGCCAC +
Preference number: 5 (lower is better)
Translates to: LHGRSMLSRVGSSPC*RSGSESGGPHNTCH
Trigger: GTGGCAAGTATTGTGAGGGCCGCCGGACTCGCTTCCGCTCCTGCAACACGGAGAACTGCCCACACGGCTCAGCATTGACCTTCCGTGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CCA 90 bp TCGAGGGGCCACACCTGTGTAGCGCGGAACCCAGTCCATGGGCCCTaGAAAGCTCTTGAAGAGGTCGGTTCGGTGGTTGTAGGCAGCACA +
Preference number: 5 (lower is better)
Translates to: SRGHTCVARNPVHGP*KALEEVGSVVVGST
Trigger: TGTGCTGCCTACAACCACCGAACCGACCTCTTCAAGAGCTTTCCAGGGCCCATGGACTGGGTTCCGCGCTACACAGGTGTGGCCCCTCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp TGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGGTGAGTTTGCATaGGTCTCGAGGGGCCACACC +
Preference number: 5 (lower is better)
Translates to: CLAEPLWRVTGRTRTTGAAGEFA*VSRGHT
Trigger: GGTGTGGCCCCTCGAGACCAATGCAAACTCACCTGC...TGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp CCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGCCATTAGGACCGAAGGTCAGTaGGCATTGGCGGTCAGCGTC +
Preference number: 5 (lower is better)
Translates to: PLWRVTGRTRTTGAAAAIRTEGQ*ALAVSV
Trigger: GACGCTGACCGCCAATGCCAACTGACCTTCGGTCCT...AATGGCAGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 90 bp GTCCTGCCGGGTGAACAGAATGGCTGTGTCAAAGTGGTCAGGATCTaGGTCGTTAGGGGTGTTGAGGCCCCGCTGCCAGGTGCAGAAGCT +
Preference number: 5 (lower is better)
Translates to: VLPGEQNGCVKVVRI*VVRGVEAPLPGAEA
Trigger: AGCTTCTGCACCTGGCAGCGGGGCCTCAACACCCCTAACGACTCAGATCCTGACCACTTTGACACAGCCATTCTGTTCACCCGGCAGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 90 bp CACCTGTGTAGCGCGGAACCCAGTCCATGGGCCCTGGAAAGCTCTTaGAGAGGTCGGTTCGGTGGTTGTAGGCAGCACACTGCTCTTCAC +
Preference number: 5 (lower is better)
Translates to: HLCSAEPSPWALESS*RGRFGGCRQHTALH
Trigger: GTGAAGAGCAGTGTGCTGCCTACAACCACCGAACCGACCTCTTCAAGAGCTTTCCAGGGCCCATGGACTGGGTTCCGCGCTACACAGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 90 bp CAGGACCGAAGGTCAGTTGGCATTGGCGGTCAGCGTCATAGTCCTTaGCAGGAAAAGTCGCTGGTAGATGGAGGGGAGCCTCCGGTTTGT +
Preference number: 5 (lower is better)
Translates to: QDRRSVGIGGQRHSP*QEKSLVDGGEPPVC
Trigger: ACAAACCGGAGGCTCCCCTCCATCTACCAGCGACTTTTCCTGGCAAGGACTATGACGCTGACCGCCAATGCCAACTGACCTTCGGTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp GTTTGGGGCAGTGAGGCAGGCAGATCTCACCCTCTACACCTCCCTACTGTGTTTGGCCCTGGAAAGCTCTaGAAGAGGTCGGTTCGGTGG +
Preference number: 5 (lower is better)
Translates to: VWGSEAGRSHPLHLPTVFGPGKL*KRSVRW
Trigger: CCACCGAACCGACCTCTTCAAGAGCTTTCCAGGGCC...AAACACAGTAGGGAGGTGTAGAGGGTGAGATCTGCCTGCCTCACTGCCCCAAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp CCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGCCATTGAAGAACCACATCTGTaGGGGAGGGCATCAGCGTGT +
Preference number: 5 (lower is better)
Translates to: PLWRVTGRTRTTGAAAAIEEPHL*GRASAC
Trigger: ACACGCTGATGCCCTCCCCAACAGATGTGGTTCTTC...AATGGCAGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGAGAGGAGGGCGTGGTGTaGAAGGGACTGGCCGCGGGA +
Preference number: 5 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGEEGVV*KGLAAG
Trigger: TCCCGCGGCCAGTCCCTTCAACACCACGCCCTCCTC...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTCTCCCAGAAGGAGCCTaGACGGTGCACATGGGACCT +
Preference number: 5 (lower is better)
Translates to: QEQQLPFLEHLLSERLYALPEGA*TVHMGP
Trigger: AGGTCCCATGTGCACCGTCAAGGCTCCTTCTGGGAG...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CCA 90 bp TCCGCTGTAGCGCAAGCTGACTGCCCCAGGAAGAACCACATCTGTTaGGGAGGGCATCAGCGTGTATTCACCATTGAGGGCGTAAGAACC +
Preference number: 5 (lower is better)
Translates to: SAVAQADCPRKNHIC*GGHQRVFTIEGVRT
Trigger: GGTTCTTACGCCCTCAATGGTGAATACACGCTGATGCCCTCCCCAACAGATGTGGTTCTTCCTGGGGCAGTCAGCTTGCGCTACAGCGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp ACTAAGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCAGGGTCTGGGCGGCACTaGGCCCCACTTGGGGCCCTT +
Preference number: 5 (lower is better)
Translates to: TKLLFVSRELLGSVLVPSGSGRH*APLGAL
Trigger: AAGGGCCCCAAGTGGGGCCAAGTGCCGCCCAGACCC...TGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCTTAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGAGCGTTGCAGCCAGTCTaGGGGAGGAGGGCGTGGTGT +
Preference number: 5 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGALQPV*GRRAWC
Trigger: ACACCACGCCCTCCTCCCCAAGACTGGCTGCAACGC...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CCA 90 bp GATCACCAGGCGCGTCACCACCAAGTTGACAGGGTTTCGGATGCTTaGGTGTTTAAAGGCTTTAGCGGCAGCTGCCATAACCGTCAGCAG +
Preference number: 5 (lower is better)
Translates to: DHQARHHQVDRVSDA*VFKGFSGSCHNRQQ
Trigger: CTGCTGACGGTTATGGCAGCTGCCGCTAAAGCCTTTAAACACCCAAGCATCCGAAACCCTGTCAACTTGGTGGTGACGCGCCTGGTGATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp GTGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCTTATCATGGAGCATGTaGAAGACATGGCCCAGTTCA +
Preference number: 5 (lower is better)
Translates to: VPGRASVEGDWENKDHRSLSWSM*KTWPSS
Trigger: TGAACTGGGCCATGTCTTCAACATGCTCCATGATAA...GCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp GTGCCTGGCAGAGCCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAAGTTAGTGCATGGCTaGGAGTTATCATGGAGCATG +
Preference number: 5 (lower is better)
Translates to: VPGRASVEGDWENKDHRSKLVHG*ELSWSM
Trigger: CATGCTCCATGATAACTCCAAGCCATGCACTAACTT...GCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGGCTCTGCCAGGCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGAGCCTGGCAGGTGAGTTaGCATTGGTCTCGAGGGGCC +
Preference number: 5 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGAWQVS*HWSRGA
Trigger: GGCCCCTCGAGACCAATGCAAACTCACCTGCCAGGC...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTGAAGAACCACATCTGTaGGGGAGGGCATCAGCGTGT +
Preference number: 5 (lower is better)
Translates to: QEQQLPFLEHLLSERLYAEEPHL*GRASAC
Trigger: ACACGCTGATGCCCTCCCCAACAGATGTGGTTCTTC...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp CACCTCTCCTGTTACAACGGCCTTTACTGTTTGAAAATCCTTGAGCACAGAGCAGAGGAGGGCGTGGTGTaGAAGGGACTGGCCGCGGGA +
Preference number: 5 (lower is better)
Translates to: HLSCYNGLYCLKILEHRAEEGVV*KGLAAG
Trigger: TCCCGCGGCCAGTCCCTTCAACACCACGCCCTCCTC...TGCTCTGTGCTCAAGGATTTTCAAACAGTAAAGGCCGTTGTAACAGGAGAGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 90 bp ATCTCAGGTGCCTGGCCCAGGTACTGTACAGTCAAACCCTCTACCTaGACCCCAGGGTCCTGTTCTAGTTCTAGTAGCAACATCTCCCCA +
Preference number: 5 (lower is better)
Translates to: ISGAWPRYCTVKPST*TPGSCSSSSSNISP
Trigger: TGGGGAGATGTTGCTACTAGAACTAGAACAGGACCCTGGGGTGCAGGTAGAGGGTTTGACTGTACAGTACCTGGGCCAGGCACCTGAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp GGTAATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGGAGTCGTTAGGGGTGTaGAGGCCCCGCTGCCAGGTG +
Preference number: 5 (lower is better)
Translates to: GNKMLNPNSSSDPPAPGMESLGV*RPRCQV
Trigger: CACCTGGCAGCGGGGCCTCAACACCCCTAACGACTC...CATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp GGTAATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCGGCCCTCACAATACTaGCCACCGTTCCGGGGGACG +
Preference number: 5 (lower is better)
Translates to: GNKMLNPNSSSDPPAPGMRPSQY*PPFRGT
Trigger: CGTCCCCCGGAACGGTGGCAAGTATTGTGAGGGCCG...CATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATTACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp CCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGCCATTCCATACCTGAATTTTTaGAAGGAGCCCGACTGCTTG +
Preference number: 5 (lower is better)
Translates to: PLWRVTGRTRTTGAAAAIPYLNF*KEPDCL
Trigger: CAAGCAGTCGGGCTCCTTCAAAAAATTCAGGTATGG...AATGGCAGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp AATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGCGTTGCAGCCAGTCTaGGGGAGGAGGGCGTGGTGT +
Preference number: 5 (lower is better)
Translates to: NKMLNPNSSSDPPAPGMPALQPV*GRRAWC
Trigger: ACACCACGCCCTCCTCCCCAAGACTGGCTGCAACGC...TGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 90 bp GAAGAACCACATCTGTTGGGGAGGGCATCAGCGTGTATTCACCATTaGGGGCGTAAGAACCGTCAGAAAGCTTCAGGGCCAGGTAGATGC +
Preference number: 5 (lower is better)
Translates to: EEPHLLGRASACIHH*GRKNRQKASGPGRC
Trigger: GCATCTACCTGGCCCTGAAGCTTTCTGACGGTTCTTACGCCCTCAATGGTGAATACACGCTGATGCCCTCCCCAACAGATGTGGTTCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTAGAGTCGTTAGGGGTGTaGAGGCCCCGCTGCCAGGTG +
Preference number: 5 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVESLGV*RPRCQV
Trigger: CACCTGGCAGCGGGGCCTCAACACCCCTAACGACTC...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp ATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGGAGTCGTTAGGGGTGTaGAGGCCCCGCTGCCAGGTG +
Preference number: 5 (lower is better)
Translates to: IFAKCLLCLLQVLTCLQKESLGV*RPRCQV
Trigger: CACCTGGCAGCGGGGCCTCAACACCCCTAACGACTC...CTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp ACTAAGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCAGGGCAGTTCTCCGTGTaGCAGGAGCGGAAGCGAGTC +
Preference number: 5 (lower is better)
Translates to: TKLLFVSRELLGSVLVPSGQFSV*QERKRV
Trigger: GACTCGCTTCCGCTCCTGCAACACGGAGAACTGCCC...TGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCTTAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTAGGATGCTACTGCCATaGAGCTTCTCTGGAAACACG +
Preference number: 5 (lower is better)
Translates to: QEQQLPFLEHLLSERLYARMLLP*SFSGNT
Trigger: CGTGTTTCCAGAGAAGCTCAATGGCAGTAGCATCCT...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp GGTAATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGAGGACCGAAGGTCAGTaGGCATTGGCGGTCAGCGTC +
Preference number: 5 (lower is better)
Translates to: GNKMLNPNSSSDPPAPGMRTEGQ*ALAVSV
Trigger: GACGCTGACCGCCAATGCCAACTGACCTTCGGTCCT...CATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATTACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTAGGGCAGTTCTCCGTGTaGCAGGAGCGGAAGCGAGTC +
Preference number: 5 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVGQFSV*QERKRV
Trigger: GACTCGCTTCCGCTCCTGCAACACGGAGAACTGCCC...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp ATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGGGGCAGTTCTCCGTGTaGCAGGAGCGGAAGCGAGTC +
Preference number: 5 (lower is better)
Translates to: IFAKCLLCLLQVLTCLQKGQFSV*QERKRV
Trigger: GACTCGCTTCCGCTCCTGCAACACGGAGAACTGCCC...CTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp AATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGCCCTGGAAAGCTCTaGAAGAGGTCGGTTCGGTGG +
Preference number: 5 (lower is better)
Translates to: NKMLNPNSSSDPPAPGMPGPGKL*KRSVRW
Trigger: CCACCGAACCGACCTCTTCAAGAGCTTTCCAGGGCC...TGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp GGTAATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGGCAGGTGAGTTTGCATaGGTCTCGAGGGGCCACACC +
Preference number: 5 (lower is better)
Translates to: GNKMLNPNSSSDPPAPGMAGEFA*VSRGHT
Trigger: GGTGTGGCCCCTCGAGACCAATGCAAACTCACCTGC...CATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp CAGGAGCAGCAGCTGCCATTCCTTGAGCACCTACTGAGTGAGAGGCTCTATGCTCCATACCTGAATTTTTaGAAGGAGCCCGACTGCTTG +
Preference number: 5 (lower is better)
Translates to: QEQQLPFLEHLLSERLYAPYLNF*KEPDCL
Trigger: CAAGCAGTCGGGCTCCTTCAAAAAATTCAGGTATGG...AGCATAGAGCCTCTCACTCAGTAGGTGCTCAAGGAATGGCAGCTGCTGCTCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp ATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGGCAGGTGAGTTTGCATaGGTCTCGAGGGGCCACACC +
Preference number: 5 (lower is better)
Translates to: IFAKCLLCLLQVLTCLQKAGEFA*VSRGHT
Trigger: GGTGTGGCCCCTCGAGACCAATGCAAACTCACCTGC...CTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp CCTCTGTGGAGGGTGACTGGGAGAACAAGGACCACAGGAGCAGCAGCTGCCATTTTGTCAAATTTCTTTTaGGAGCCAATGATCCGGTCA +
Preference number: 5 (lower is better)
Translates to: PLWRVTGRTRTTGAAAAILSNFF*EPMIRS
Trigger: TGACCGGATCATTGGCTCCAAAAAGAAATTTGACAA...AATGGCAGCTGCTGCTCCTGTGGTCCTTGTTCTCCCAGTCACCCTCCACAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp AAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGCCAGGATGGAATGCTGCCATCTaGTCATCTGCTACCACCAGT +
Preference number: 5 (lower is better)
Translates to: KMLNPNSSSDPPAPGMPGWNAAI*SSATTS
Trigger: ACTGGTGGTAGCAGATGACAAGATGGCAGCATTCCA...TCCTGGCATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp CACACACACACACCACTCATATTTGTCACCAACACCCTGGATTTCATAGCTAGGGCTGTGGACAATGGCTaGAGTCAGGACCGAAGGTCA +
Preference number: 5 (lower is better)
Translates to: HTHTPLIFVTNTLDFIARAVDNG*SQDRRS
Trigger: TGACCTTCGGTCCTGACTCAAGCCATTGTCCACAGC...CCTAGCTATGAAATCCAGGGTGTTGGTGACAAATATGAGTGGTGTGTGTGTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp GGTAATAAGATGCTGAACCCTAACTCAAGTTCAGATCCACCAGCTCCTGGAATGGCTGTGGACAATGGCTaGAGTCAGGACCGAAGGTCA +
Preference number: 5 (lower is better)
Translates to: GNKMLNPNSSSDPPAPGMAVDNG*SQDRRS
Trigger: TGACCTTCGGTCCTGACTCAAGCCATTGTCCACAGC...CATTCCAGGAGCTGGTGGATCTGAACTTGAGTTAGGGTTCAGCATCTTATTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp CACACACACACACCACTCATATTTGTCACCAACACCCTGGATTTCATAGCTAGGGAAGAACCACATCTGTaGGGGAGGGCATCAGCGTGT +
Preference number: 5 (lower is better)
Translates to: HTHTPLIFVTNTLDFIAREEPHL*GRASAC
Trigger: ACACGCTGATGCCCTCCCCAACAGATGTGGTTCTTC...CCTAGCTATGAAATCCAGGGTGTTGGTGACAAATATGAGTGGTGTGTGTGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTAGCTGTGGACAATGGCTaGAGTCAGGACCGAAGGTCA +
Preference number: 5 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVAVDNG*SQDRRS
Trigger: TGACCTTCGGTCCTGACTCAAGCCATTGTCCACAGC...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp GTTTGGGGCAGTGAGGCAGGCAGATCTCACCCTCTACACCTCCCTACTGTGTTTTTGTCAAATTTCTTTTaGGAGCCAATGATCCGGTCA +
Preference number: 5 (lower is better)
Translates to: VWGSEAGRSHPLHLPTVFLSNFF*EPMIRS
Trigger: TGACCGGATCATTGGCTCCAAAAAGAAATTTGACAA...AAACACAGTAGGGAGGTGTAGAGGGTGAGATCTGCCTGCCTCACTGCCCCAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp TTCATGTTCTTGTTGACTATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGGGCCCTGGAAAGCTCTaGAAGAGGTCGGTTCGGTGG +
Preference number: 5 (lower is better)
Translates to: FMFLLTIFAKCLLCLLQVGPGKL*KRSVRW
Trigger: CCACCGAACCGACCTCTTCAAGAGCTTTCCAGGGCC...CACCTGCAGCAGACATAATAAACACTTGGCAAAGATAGTCAACAAGAACATGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp CTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGCTTACGTGCCTACAGAAGTATGGAATGCTGCCATCTaGTCATCTGCTACCACCAGT +
Preference number: 5 (lower is better)
Translates to: LCQVFIMSAAGAYVPTEVWNAAI*SSATTS
Trigger: ACTGGTGGTAGCAGATGACAAGATGGCAGCATTCCA...TACTTCTGTAGGCACGTAAGCACCTGCAGCAGACATAATAAACACTTGGCAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp ACTAAGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCACCATACCTGAATTTTTaGAAGGAGCCCGACTGCTTG +
Preference number: 5 (lower is better)
Translates to: TKLLFVSRELLGSVLVPSPYLNF*KEPDCL
Trigger: CAAGCAGTCGGGCTCCTTCAAAAAATTCAGGTATGG...TGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCTTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp CTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTCTTGTAGGATGCTACTGCCATaGAGCTTCTCTGGAAACACG +
Preference number: 5 (lower is better)
Translates to: LFVSRELLGSVLVPSCSCRMLLP*SFSGNT
Trigger: CGTGTTTCCAGAGAAGCTCAATGGCAGTAGCATCCT...ACAAGAACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp TTCATGTTCTTGTTGACTATCTTTGCCAAGTGTTTATTATGTCTGCTGCAGGTGTGGAATGCTGCCATCTaGTCATCTGCTACCACCAGT +
Preference number: 5 (lower is better)
Translates to: FMFLLTIFAKCLLCLLQVWNAAI*SSATTS
Trigger: ACTGGTGGTAGCAGATGACAAGATGGCAGCATTCCA...CACCTGCAGCAGACATAATAAACACTTGGCAAAGATAGTCAACAAGAACATGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS-3UTR CAA 90 bp AGCTCCTGTTTGTGTCCAGGGAGTTGTTGGGTTCTGTTCTTGTACCTTCATGTTTTGTCAAATTTCTTTTaGGAGCCAATGATCCGGTCA +
Preference number: 5 (lower is better)
Translates to: SSCLCPGSCWVLFLYLHVLSNFF*EPMIRS
Trigger: TGACCGGATCATTGGCTCCAAAAAGAAATTTGACAA...AACATGAAGGTACAAGAACAGAACCCAACAACTCCCTGGACACAAACAGGAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CAA 90 bp TCCGTGTTGCAGGAGCGGAAGCGAGTCCGGCGGCCCTCACAATACTaGCCACCGTTCCGGGGGACGGGCCTCGTGCAATCCCGGGAGGAG +
Preference number: 6 (lower is better)
Translates to: SVLQERKRVRRPSQY*PPFRGTGLVQSREE
Trigger: CTCCTCCCGGGATTGCACGAGGCCCGTCCCCCGGAACGGTGGCAAGTATTGTGAGGGCCGCCGGACTCGCTTCCGCTCCTGCAACACGGA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 72 bp AGGAGCGGAAGCGAGTCCGGCGGCCCTCACAATACTTaGCACCGTTCCGGGGGACGGGCCTCGTGCAATCCC +
Preference number: 6 (lower is better)
Translates to: RSGSESGGPHNT*HRSGGRASCNP
Trigger: GGGATTGCACGAGGCCCGTCCCCCGGAACGGTGGCAAGTATTGTGAGGGCCGCCGGACTCGCTTCCGCTCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CAA 72 bp CAGGAGCGGAAGCGAGTCCGGCGGCCCTCACAATACTaGCCACCGTTCCGGGGGACGGGCCTCGTGCAATCC +
Preference number: 6 (lower is better)
Translates to: QERKRVRRPSQY*PPFRGTGLVQS
Trigger: GGATTGCACGAGGCCCGTCCCCCGGAACGGTGGCAAGTATTGTGAGGGCCGCCGGACTCGCTTCCGCTCCTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 72 bp CCTTGGCTGCTGGCAGGACTCTTCCGGCGTAGGATGTaGGCCCCCGGTCCCCCAGCAGAGTTAAGGGCGCCT +
Preference number: 6 (lower is better)
Translates to: PWLLAGLFRRRM*APGPPAELRAP
Trigger: AGGCGCCCTTAACTCTGCTGGGGGACCGGGGGCTCACATCCTACGCCGGAAGAGTCCTGCCAGCAGCCAAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 72 bp CACAATACTTGCCACCGTTCCGGGGGACGGGCCTCGTaGAATCCCGGGAGGAGAACTGGACACCACCCCCAC +
Preference number: 6 (lower is better)
Translates to: HNTCHRSGGRAS*NPGRRTGHHPH
Trigger: GTGGGGGTGGTGTCCAGTTCTCCTCCCGGGATTGCACGAGGCCCGTCCCCCGGAACGGTGGCAAGTATTGTG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CCA 72 bp GGGTTGCCAGCCACCAGGACTTGCAGCGTCAAGGGCTaGGCCAGCGGCCCATGTCCAGACAGTGTCTCTGAG +
Preference number: 6 (lower is better)
Translates to: GLPATRTCSVKG*ASGPCPDSVSE
Trigger: CTCAGAGACACTGTCTGGACATGGGCCGCTGGCCCAGCCCTTGACGCTGCAAGTCCTGGTGGCTGGCAACCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CCA 72 bp CCCCCAGCAGAGTTAAGGGCGCCTCCTTCCAGAGGCTaGAGGTGGAGTTCGGCCCCACGGTACTGCAGTACC +
Preference number: 6 (lower is better)
Translates to: PPAELRAPPSRG*RWSSAPRYCST
Trigger: GGTACTGCAGTACCGTGGGGCCGAACTCCACCTCCAGCCTCTGGAAGGAGGCGCCCTTAACTCTGCTGGGGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 72 bp TGCGGGAAATGGGACTCGGGCTCCCAGAAGGAGCCTTaGCGGTGCACATGGGACCTTGGCTGCTGGCAGGAC +
Preference number: 6 (lower is better)
Translates to: CGKWDSGSQKEP*RCTWDLGCWQD
Trigger: GTCCTGCCAGCAGCCAAGGTCCCATGTGCACCGTCAAGGCTCCTTCTGGGAGCCCGAGTCCCATTTCCCGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 72 bp TCAGGATCTGAGTCGTTAGGGGTGTTGAGGCCCCGCTaGCAGGTGCAGAAGCTGCGTAGGGTCTGGGCGGCA +
Preference number: 6 (lower is better)
Translates to: SGSESLGVLRPR*QVQKLRRVWAA
Trigger: TGCCGCCCAGACCCTACGCAGCTTCTGCACCTGGCAGCGGGGCCTCAACACCCCTAACGACTCAGATCCTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 72 bp GGCCACCCATGCAGGCCTGTGAAGACCCGCAGGGAGTaGCATCAGCCCAAGGTGAGTGCTTCGTCTGGCACA +
Preference number: 6 (lower is better)
Translates to: GHPCRPVKTRRE*HQPKVSASSGT
Trigger: TGTGCCAGACGAAGCACTCACCTTGGGCTGATGGCACTCCCTGCGGGTCTTCACAGGCCTGCATGGGTGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 72 bp AGACGTGCATTCTGTGGGTTGCCAGCCACCAGGACTTaGAGCGTCAAGGGCTGGGCCAGCGGCCCATGTCCA +
Preference number: 6 (lower is better)
Translates to: RRAFCGLPATRT*SVKGWASGPCP
Trigger: TGGACATGGGCCGCTGGCCCAGCCCTTGACGCTGCAAGTCCTGGTGGCTGGCAACCCACAGAATGCACGTCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 72 bp CTTTGCAGCCAGTGCCCAGTCAAGCCCCTCCTGGGATaGAAGCCCATCTGGGACATGGTACCCGGGCTGCAG +
Preference number: 6 (lower is better)
Translates to: LCSQCPVKPLLG*KPIWDMVPGLQ
Trigger: CTGCAGCCCGGGTACCATGTCCCAGATGGGCTTGCATCCCAGGAGGGGCTTGACTGGGCACTGGCTGCAAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219033.2
CDS CAA 72 bp CTGCGGGAAATGGGACTCGGGCTCCCAGAAGGAGCCTaGACGGTGCACATGGGACCTTGGCTGCTGGCAGGA +
Preference number: 6 (lower is better)
Translates to: LREMGLGLPEGA*TVHMGPWLLAG
Trigger: TCCTGCCAGCAGCCAAGGTCCCATGTGCACCGTCAAGGCTCCTTCTGGGAGCCCGAGTCCCATTTCCCGCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CAA 90 bp CGCTTGGTTCTGCGGGAAATGGGACTCGGGCTCCCAGAAGGAGCCTaGACGGTGCACATGGGACCTTGGCTGCTGGCAGGACTCTTCCGG +
Preference number: 6 (lower is better)
Translates to: RLVLREMGLGLPEGA*TVHMGPWLLAGLFR
Trigger: CCGGAAGAGTCCTGCCAGCAGCCAAGGTCCCATGTGCACCGTCAAGGCTCCTTCTGGGAGCCCGAGTCCCATTTCCCGCAGAACCAAGCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CAA 90 bp ACTGTACCGCAGACGTGCATTCTGTGGGTTGCCAGCCACCAGGACTaGCAGCGTCAAGGGCTGGGCCAGCGGCCCATGTCCAGACAGTGT +
Preference number: 6 (lower is better)
Translates to: TVPQTCILWVASHQD*QRQGLGQRPMSRQC
Trigger: ACACTGTCTGGACATGGGCCGCTGGCCCAGCCCTTGACGCTGCAAGTCCTGGTGGCTGGCAACCCACAGAATGCACGTCTGCGGTACAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CAA 90 bp CAGCAGCAGCCTCCGCCACTGCACAGTGTGAAGCGGCAAGCAGGGTaGGAATCTTTGCAGCCAGTGCCCAGTCAAGCCCCTCCTGGGATG +
Preference number: 6 (lower is better)
Translates to: QQQPPPLHSVKRQAG*ESLQPVPSQAPPGM
Trigger: CATCCCAGGAGGGGCTTGACTGGGCACTGGCTGCAAAGATTCCAACCCTGCTTGCCGCTTCACACTGTGCAGTGGCGGAGGCTGCTGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 72 bp GCGTTGCAGCCAGTCTTGGGGAGGAGGGCGTGGTGTTaGAGGGACTGGCCGCGGGACAAAGAAACTGTACCG +
Preference number: 6 (lower is better)
Translates to: ALQPVLGRRAWC*RDWPRDKETVP
Trigger: CGGTACAGTTTCTTTGTCCCGCGGCCAGTCCCTTCAACACCACGCCCTCCTCCCCAAGACTGGCTGCAACGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 72 bp AGGTCAATGCTGAGCCGTGTGGGCAGTTCTCCGTGTTaGAGGAGCGGAAGCGAGTCCGGCGGCCCTCACAAT +
Preference number: 6 (lower is better)
Translates to: RSMLSRVGSSPC*RSGSESGGPHN
Trigger: ATTGTGAGGGCCGCCGGACTCGCTTCCGCTCCTGCAACACGGAGAACTGCCCACACGGCTCAGCATTGACCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 72 bp TGCCACCCGGGGCTCCAATACGTAGTAGTAGCCCAGTaGCCGGGCCTGGCAGGTGAGTTTGCATTGGTCTCG +
Preference number: 6 (lower is better)
Translates to: CHPGLQYVVVAQ*PGLAGEFALVS
Trigger: CGAGACCAATGCAAACTCACCTGCCAGGCCCGGGCACTGGGCTACTACTACGTATTGGAGCCCCGGGTGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 72 bp GACAGAGGAGGTGTCTGGGGAGCAGGGAGTCCCATCTaGCACCCGGGGCTCCAATACGTAGTAGTAGCCCAG +
Preference number: 6 (lower is better)
Translates to: DRGGVWGAGSPI*HPGLQYVVVAQ
Trigger: CTGGGCTACTACTACGTATTGGAGCCCCGGGTGGCAGATGGGACTCCCTGCTCCCCAGACACCTCCTCTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 72 bp TGCCCAGGGACGCTTCCGAAGGATCTTCAGTATCTCTaGCCTGCGTTGCAGCCAGTCTTGGGGAGGAGGGCG +
Preference number: 6 (lower is better)
Translates to: CPGTLPKDLQYL*PALQPVLGRRA
Trigger: CGCCCTCCTCCCCAAGACTGGCTGCAACGCAGGGCAGAGATACTGAAGATCCTTCGGAAGCGTCCCTGGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CCA 72 bp TCAAGCCCCTCCTGGGATGCAAGCCCATCTGGGACATaGTACCCGGGCTGCAGCTGGGATGGATTGAGGCCA +
Preference number: 6 (lower is better)
Translates to: SSPSWDASPSGT*YPGCSWDGLRP
Trigger: TGGCCTCAATCCATCCCAGCTGCAGCCCGGGTACCATGTCCCAGATGGGCTTGCATCCCAGGAGGGGCTTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219033.2
CDS CCA 72 bp TGCCCAGTCAAGCCCCTCCTGGGATGCAAGCCCATCTaGGACATGGTACCCGGGCTGCAGCTGGGATGGATT +
Preference number: 6 (lower is better)
Translates to: CPVKPLLGCKPI*DMVPGLQLGWI
Trigger: AATCCATCCCAGCTGCAGCCCGGGTACCATGTCCCAGATGGGCTTGCATCCCAGGAGGGGCTTGACTGGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219033.2
CDS CCA 72 bp GGAATCTTTGCAGCCAGTGCCCAGTCAAGCCCCTCCTaGGATGCAAGCCCATCTGGGACATGGTACCCGGGC +
Preference number: 6 (lower is better)
Translates to: GIFAASAQSSPS*DASPSGTWYPG
Trigger: GCCCGGGTACCATGTCCCAGATGGGCTTGCATCCCAGGAGGGGCTTGACTGGGCACTGGCTGCAAAGATTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219033.2
CDS CAA 72 bp AAGGTCAATGCTGAGCCGTGTGGGCAGTTCTCCGTGTaGCAGGAGCGGAAGCGAGTCCGGCGGCCCTCACAA +
Preference number: 6 (lower is better)
Translates to: KVNAEPCGQFSV*QERKRVRRPSQ
Trigger: TTGTGAGGGCCGCCGGACTCGCTTCCGCTCCTGCAACACGGAGAACTGCCCACACGGCTCAGCATTGACCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CAA 90 bp CCTCCGCCACTGCACAGTGTGAAGCGGCAAGCAGGGTTGGAATCTTaGCAGCCAGTGCCCAGTCAAGCCCCTCCTGGGATGCAAGCCCAT +
Preference number: 6 (lower is better)
Translates to: PPPLHSVKRQAGLES*QPVPSQAPPGMQAH
Trigger: ATGGGCTTGCATCCCAGGAGGGGCTTGACTGGGCACTGGCTGCAAAGATTCCAACCCTGCTTGCCGCTTCACACTGTGCAGTGGCGGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CAA 90 bp AGCAGCCTGGCAGGAACGCCTGATCCAGGTAGGATGCTACTGCCATaGAGCTTCTCTGGAAACACGATCTCCTCCTCCCGGGGGAGGGGG +
Preference number: 6 (lower is better)
Translates to: SSLAGTPDPGRMLLP*SFSGNTISSSRGRG
Trigger: CCCCCTCCCCCGGGAGGAGGAGATCGTGTTTCCAGAGAAGCTCAATGGCAGTAGCATCCTACCTGGATCAGGCGTTCCTGCCAGGCTGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 72 bp AAGGCCAGCAGCAGCAGCCTCCGCCACTGCACAGTGTaGAGCGGCAAGCAGGGTTGGAATCTTTGCAGCCAG +
Preference number: 6 (lower is better)
Translates to: KASSSSLRHCTV*SGKQGWNLCSQ
Trigger: CTGGCTGCAAAGATTCCAACCCTGCTTGCCGCTTCACACTGTGCAGTGGCGGAGGCTGCTGCTGCTGGCCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 72 bp CCCAGTGCAGAGATGCCACCGACTCCGGATCTCCATTaGTGGTGCCAGTCAGGTAGGTACCTGGCTCTGCCC +
Preference number: 6 (lower is better)
Translates to: PSAEMPPTPDLH*WCQSGRYLALP
Trigger: GGGCAGAGCCAGGTACCTACCTGACTGGCACCATCAATGGAGATCCGGAGTCGGTGGCATCTCTGCACTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 72 bp GAAGACCCGCAGGGAGTGCCATCAGCCCAAGGTGAGTaGTTCGTCTGGCACATGGCATGGCCATTGAGGTGG +
Preference number: 6 (lower is better)
Translates to: EDPQGVPSAQGE*FVWHMAWPLRW
Trigger: CCACCTCAATGGCCATGCCATGTGCCAGACGAAGCACTCACCTTGGGCTGATGGCACTCCCTGCGGGTCTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 72 bp AGGGACGCTTCCGAAGGATCTTCAGTATCTCTGCCCTaGGTTGCAGCCAGTCTTGGGGAGGAGGGCGTGGTG +
Preference number: 6 (lower is better)
Translates to: RDASEGSSVSLP*VAASLGEEGVV
Trigger: CACCACGCCCTCCTCCCCAAGACTGGCTGCAACGCAGGGCAGAGATACTGAAGATCCTTCGGAAGCGTCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CCA 72 bp CAGAGGGCAGCACAGGGCGGTGGCAGCTGTGGACAATaGCTTGAGTCAGGACCGAAGGTCAGTTGGCATTGG +
Preference number: 6 (lower is better)
Translates to: QRAAQGGGSCGQ*LESGPKVSWHW
Trigger: CCAATGCCAACTGACCTTCGGTCCTGACTCAAGCCATTGTCCACAGCTGCCACCGCCCTGTGCTGCCCTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CCA 72 bp GCAGAGTTAAGGGCGCCTCCTTCCAGAGGCTGGAGGTaGAGTTCGGCCCCACGGTACTGCAGTACCCCTAAT +
Preference number: 6 (lower is better)
Translates to: AELRAPPSRGWR*SSAPRYCSTPN
Trigger: ATTAGGGGTACTGCAGTACCGTGGGGCCGAACTCCACCTCCAGCCTCTGGAAGGAGGCGCCCTTAACTCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CAA 72 bp CCTCCGCCACTGCACAGTGTGAAGCGGCAAGCAGGGTaGGAATCTTTGCAGCCAGTGCCCAGTCAAGCCCCT +
Preference number: 6 (lower is better)
Translates to: PPPLHSVKRQAG*ESLQPVPSQAP
Trigger: AGGGGCTTGACTGGGCACTGGCTGCAAAGATTCCAACCCTGCTTGCCGCTTCACACTGTGCAGTGGCGGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CAA 90 bp AGAATGGCTGTGTCAAAGTGGTCAGGATCTGAGTCGTTAGGGGTGTaGAGGCCCCGCTGCCAGGTGCAGAAGCTGCGTAGGGTCTGGGCG +
Preference number: 6 (lower is better)
Translates to: RMAVSKWSGSESLGV*RPRCQVQKLRRVWA
Trigger: CGCCCAGACCCTACGCAGCTTCTGCACCTGGCAGCGGGGCCTCAACACCCCTAACGACTCAGATCCTGACCACTTTGACACAGCCATTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CAA 90 bp TCTTCACGGAAGGTCAATGCTGAGCCGTGTGGGCAGTTCTCCGTGTaGCAGGAGCGGAAGCGAGTCCGGCGGCCCTCACAATACTTGCCA +
Preference number: 6 (lower is better)
Translates to: SSRKVNAEPCGQFSV*QERKRVRRPSQYLP
Trigger: TGGCAAGTATTGTGAGGGCCGCCGGACTCGCTTCCGCTCCTGCAACACGGAGAACTGCCCACACGGCTCAGCATTGACCTTCCGTGAAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 72 bp AGCGCGGAACCCAGTCCATGGGCCCTGGAAAGCTCTTaGAGAGGTCGGTTCGGTGGTTGTAGGCAGCACACT +
Preference number: 6 (lower is better)
Translates to: SAEPSPWALESS*RGRFGGCRQHT
Trigger: AGTGTGCTGCCTACAACCACCGAACCGACCTCTTCAAGAGCTTTCCAGGGCCCATGGACTGGGTTCCGCGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 72 bp ATACGTAGTAGTAGCCCAGTGCCCGGGCCTGGCAGGTaGGTTTGCATTGGTCTCGAGGGGCCACACCTGTGT +
Preference number: 6 (lower is better)
Translates to: IRSSSPVPGPGR*VCIGLEGPHLC
Trigger: ACACAGGTGTGGCCCCTCGAGACCAATGCAAACTCACCTGCCAGGCCCGGGCACTGGGCTACTACTACGTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 72 bp GACTGGCCGCGGGACAAAGAAACTGTACCGCAGACGTaGATTCTGTGGGTTGCCAGCCACCAGGACTTGCAG +
Preference number: 6 (lower is better)
Translates to: DWPRDKETVPQT*ILWVASHQDLQ
Trigger: CTGCAAGTCCTGGTGGCTGGCAACCCACAGAATGCACGTCTGCGGTACAGTTTCTTTGTCCCGCGGCCAGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CAA 72 bp GTGTCAAAGTGGTCAGGATCTGAGTCGTTAGGGGTGTaGAGGCCCCGCTGCCAGGTGCAGAAGCTGCGTAGG +
Preference number: 6 (lower is better)
Translates to: VSKWSGSESLGV*RPRCQVQKLRR
Trigger: CCTACGCAGCTTCTGCACCTGGCAGCGGGGCCTCAACACCCCTAACGACTCAGATCCTGACCACTTTGACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CAA 72 bp CTGCACAGTGTGAAGCGGCAAGCAGGGTTGGAATCTTaGCAGCCAGTGCCCAGTCAAGCCCCTCCTGGGATG +
Preference number: 6 (lower is better)
Translates to: LHSVKRQAGLES*QPVPSQAPPGM
Trigger: CATCCCAGGAGGGGCTTGACTGGGCACTGGCTGCAAAGATTCCAACCCTGCTTGCCGCTTCACACTGTGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CAA 90 bp CCTTCCTGGCCGGACCCCAGGATCACCAGGCGCGTCACCACCAAGTaGACAGGGTTTCGGATGCTTGGGTGTTTAAAGGCTTTAGCGGCA +
Preference number: 6 (lower is better)
Translates to: PSWPDPRITRRVTTK*TGFRMLGCLKALAA
Trigger: TGCCGCTAAAGCCTTTAAACACCCAAGCATCCGAAACCCTGTCAACTTGGTGGTGACGCGCCTGGTGATCCTGGGGTCCGGCCAGGAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CAA 90 bp CCCGCAGGGATCGTGACCACATCGCTGTATCCATACCTGAATTTTTaGAAGGAGCCCGACTGCTTGCTGCAGCGAGAGCCATCCCCGCCG +
Preference number: 6 (lower is better)
Translates to: PAGIVTTSLYPYLNF*KEPDCLLQREPSPP
Trigger: CGGCGGGGATGGCTCTCGCTGCAGCAAGCAGTCGGGCTCCTTCAAAAAATTCAGGTATGGATACAGCGATGTGGTCACGATCCCTGCGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CAA 90 bp GCTACCACCAGTGTCTCCACGAATCTACTCAGAGAAGCGAAGCGCTaGGTTCTGCGGGAAATGGGACTCGGGCTCCCAGAAGGAGCCTTG +
Preference number: 6 (lower is better)
Translates to: ATTSVSTNLLREAKR*VLREMGLGLPEGAL
Trigger: CAAGGCTCCTTCTGGGAGCCCGAGTCCCATTTCCCGCAGAACCAAGCGCTTCGCTTCTCTGAGTAGATTCGTGGAGACACTGGTGGTAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 72 bp CAAAGAAACTGTACCGCAGACGTGCATTCTGTGGGTTaGCAGCCACCAGGACTTGCAGCGTCAAGGGCTGGG +
Preference number: 6 (lower is better)
Translates to: QRNCTADVHSVG*QPPGLAASRAG
Trigger: CCCAGCCCTTGACGCTGCAAGTCCTGGTGGCTGGCAACCCACAGAATGCACGTCTGCGGTACAGTTTCTTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 72 bp TACTGCAGTACCCCTAATAGGGCTCCCCCGTCCCAGTaGAGAGATGCCACCGACTCCGGATCTCCATTGATG +
Preference number: 6 (lower is better)
Translates to: YCSTPNRAPPSQ*RDATDSGSPLM
Trigger: CATCAATGGAGATCCGGAGTCGGTGGCATCTCTGCACTGGGACGGGGGAGCCCTATTAGGGGTACTGCAGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 72 bp CCACGAATCTACTCAGAGAAGCGAAGCGCTTGGTTCTaGGGGAAATGGGACTCGGGCTCCCAGAAGGAGCCT +
Preference number: 6 (lower is better)
Translates to: PRIYSEKRSAWF*GKWDSGSQKEP
Trigger: AGGCTCCTTCTGGGAGCCCGAGTCCCATTTCCCGCAGAACCAAGCGCTTCGCTTCTCTGAGTAGATTCGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CCA 72 bp CACACCTGTGTAGCGCGGAACCCAGTCCATGGGCCCTaGAAAGCTCTTGAAGAGGTCGGTTCGGTGGTTGTA +
Preference number: 6 (lower is better)
Translates to: HTCVARNPVHGP*KALEEVGSVVV
Trigger: TACAACCACCGAACCGACCTCTTCAAGAGCTTTCCAGGGCCCATGGACTGGGTTCCGCGCTACACAGGTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CCA 72 bp GCGCAAGCTGACTGCCCCAGGAAGAACCACATCTGTTaGGGAGGGCATCAGCGTGTATTCACCATTGAGGGC +
Preference number: 6 (lower is better)
Translates to: AQADCPRKNHIC*GGHQRVFTIEG
Trigger: GCCCTCAATGGTGAATACACGCTGATGCCCTCCCCAACAGATGTGGTTCTTCCTGGGGCAGTCAGCTTGCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CCA 72 bp CGGGACAAAGAAACTGTACCGCAGACGTGCATTCTGTaGGTTGCCAGCCACCAGGACTTGCAGCGTCAAGGG +
Preference number: 6 (lower is better)
Translates to: RDKETVPQTCIL*VASHQDLQRQG
Trigger: CCCTTGACGCTGCAAGTCCTGGTGGCTGGCAACCCACAGAATGCACGTCTGCGGTACAGTTTCTTTGTCCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CCA 72 bp ACATCTCCCCAAAGGCTGGCAATCGGTACAGCAGCCTaGCAGGAACGCCTGATCCAGGTAGGATGCTACTGC +
Preference number: 6 (lower is better)
Translates to: TSPQRLAIGTAA*QERLIQVGCYC
Trigger: GCAGTAGCATCCTACCTGGATCAGGCGTTCCTGCCAGGCTGCTGTACCGATTGCCAGCCTTTGGGGAGATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 72 bp CAGGAACGCCTGATCCAGGTAGGATGCTACTGCCATTaGGCTTCTCTGGAAACACGATCTCCTCCTCCCGGG +
Preference number: 6 (lower is better)
Translates to: QERLIQVGCYCH*ASLETRSPPPG
Trigger: CCCGGGAGGAGGAGATCGTGTTTCCAGAGAAGCTCAATGGCAGTAGCATCCTACCTGGATCAGGCGTTCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS GCA 72 bp AGGTCAGTTGGCATTGGCGGTCAGCGTCATAGTCCTTaGCAGGAAAAGTCGCTGGTAGATGGAGGGGAGCCT +
Preference number: 6 (lower is better)
Translates to: RSVGIGGQRHSP*QEKSLVDGGEP
Trigger: AGGCTCCCCTCCATCTACCAGCGACTTTTCCTGGCAAGGACTATGACGCTGACCGCCAATGCCAACTGACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CCA 72 bp AGGTCCTGCCGGGTGAACAGAATGGCTGTGTCAAAGTaGTCAGGATCTGAGTCGTTAGGGGTGTTGAGGCCC +
Preference number: 6 (lower is better)
Translates to: RSCRVNRMAVSK*SGSESLGVLRP
Trigger: GGGCCTCAACACCCCTAACGACTCAGATCCTGACCACTTTGACACAGCCATTCTGTTCACCCGGCAGGACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CCA 72 bp GTGTCTCCACGAATCTACTCAGAGAAGCGAAGCGCTTaGTTCTGCGGGAAATGGGACTCGGGCTCCCAGAAG +
Preference number: 6 (lower is better)
Translates to: VSPRIYSEKRSA*FCGKWDSGSQK
Trigger: CTTCTGGGAGCCCGAGTCCCATTTCCCGCAGAACCAAGCGCTTCGCTTCTCTGAGTAGATTCGTGGAGACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CAA 72 bp ACAAAGAAACTGTACCGCAGACGTGCATTCTGTGGGTaGCCAGCCACCAGGACTTGCAGCGTCAAGGGCTGG +
Preference number: 6 (lower is better)
Translates to: TKKLYRRRAFCG*PATRTCSVKGW
Trigger: CCAGCCCTTGACGCTGCAAGTCCTGGTGGCTGGCAACCCACAGAATGCACGTCTGCGGTACAGTTTCTTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CAA 72 bp GCAGGAACGCCTGATCCAGGTAGGATGCTACTGCCATaGAGCTTCTCTGGAAACACGATCTCCTCCTCCCGG +
Preference number: 6 (lower is better)
Translates to: AGTPDPGRMLLP*SFSGNTISSSR
Trigger: CCGGGAGGAGGAGATCGTGTTTCCAGAGAAGCTCAATGGCAGTAGCATCCTACCTGGATCAGGCGTTCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CAA 72 bp AGTGTCTCCACGAATCTACTCAGAGAAGCGAAGCGCTaGGTTCTGCGGGAAATGGGACTCGGGCTCCCAGAA +
Preference number: 6 (lower is better)
Translates to: SVSTNLLREAKR*VLREMGLGLPE
Trigger: TTCTGGGAGCCCGAGTCCCATTTCCCGCAGAACCAAGCGCTTCGCTTCTCTGAGTAGATTCGTGGAGACACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS TCA 72 bp CATCTGTTGGGGAGGGCATCAGCGTGTATTCACCATTaGGGGCGTAAGAACCGTCAGAAAGCTTCAGGGCCA +
Preference number: 6 (lower is better)
Translates to: HLLGRASACIHH*GRKNRQKASGP
Trigger: TGGCCCTGAAGCTTTCTGACGGTTCTTACGCCCTCAATGGTGAATACACGCTGATGCCCTCCCCAACAGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2
CDS CCA 72 bp GCGCGTCACCACCAAGTTGACAGGGTTTCGGATGCTTaGGTGTTTAAAGGCTTTAGCGGCAGCTGCCATAAC +
Preference number: 6 (lower is better)
Translates to: ARHHQVDRVSDA*VFKGFSGSCHN
Trigger: GTTATGGCAGCTGCCGCTAAAGCCTTTAAACACCCAAGCATCCGAAACCCTGTCAACTTGGTGGTGACGCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111314.2
ENSMUST00000111315.9
ENSMUST00000219033.2