RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ADAMTS3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043635

Ensembl transcript IDs: ENSMUST00000061427.10, ENSMUST00000163159.8, ENSMUST00000198151.2

Found 357 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AACCTTTTGTGGAGAGTACCACTTTTTAACAAGCTGTATGCACCATaGAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTAGCTCC +
Preference number: 1 (lower is better)
Translates to: NLLWRVPLFNKLYAP*REGGGPGFPLTSSS
Trigger: GGAGCTAGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGGTACTCTCCACAAAAGGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
3UTR CCA 90 bp CAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTaGCGCTTTCTTCTAATGGATTCTGGTAAACAAGTCGATGTGGAA +
Preference number: 1 (lower is better)
Translates to: QGPLQLGSFLLKNSL*RFLLMDSGKQVDVE
Trigger: TTCCACATCGACTTGTTTACCAGAATCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
3UTR TCA 90 bp GCAAGACTGTTGGAATTGTTCTGCCTTAAAGGTAACTGTAAAAACTaGGACTGTGCTGTGGGAATAGATATGCAGACAGTGCTGCAGAGC +
Preference number: 1 (lower is better)
Translates to: ARLLELFCLKGNCKN*DCAVGIDMQTVLQS
Trigger: GCTCTGCAGCACTGTCTGCATATCTATTCCCACAGCACAGTCTCAGTTTTTACAGTTACCTTTAAGGCAGAACAATTCCAACAGTCTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR-3UTR TCA 90 bp GCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTGAAGCAACTAAAAAGTaGACCAGCACTTCCGGTCCT +
Preference number: 2 (lower is better)
Translates to: AGATAAGLFPSEKQSLALEATKK*TSTSGP
Trigger: AGGACCGGAAGTGCTGGTTCACTTTTTAGTTGCTTC...AAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
3UTR-3UTR CCA 90 bp AGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCCGAGTAAACCTTTTGTaGAGAGTACCACTTTTTAAC +
Preference number: 2 (lower is better)
Translates to: RQGPLQLGSFLLKNSLWRRVNLL*RVPLFN
Trigger: GTTAAAAAGTGGTACTCTCCACAAAAGGTTTACTCG...GCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
3UTR-3UTR CCA 90 bp TGCAAACTGGTATCACACCAGGCCTGCATAAAGAACTGTCCTTTGATGGGAAATCGCTTCTGGAGAATATaGAGGGAGAACTCTTCCTCC +
Preference number: 2 (lower is better)
Translates to: CKLVSHQACIKNCPLMGNRFWRI*RENSSS
Trigger: GGAGGAAGAGTTCTCCCTCCATATTCTCCAGAAGCG...ATTTCCCATCAAAGGACAGTTCTTTATGCAGGCCTGGTGTGATACCAGTTTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR-3UTR CCA 90 bp TCCTTTGATGGGAAATTCAGGCCCCAACTGAGGAAAGACTTTCTTCCTATGGCAGCAGGGCAAGACTGTTaGAATTGTTCTGCCTTAAAG +
Preference number: 2 (lower is better)
Translates to: SFDGKFRPQLRKDFLPMAAGQDC*NCSALK
Trigger: CTTTAAGGCAGAACAATTCCAACAGTCTTGCCCTGC...TGCCATAGGAAGAAAGTCTTTCCTCAGTTGGGGCCTGAATTTCCCATCAAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR-3UTR GCA 90 bp TGCAAACTGGTATCACACCAGGCCTGCATAAAGAACTGTCCTTTGATGGGAAATATATGCAGACAGTGCTaGAGAGCCCTGAATACATCT +
Preference number: 2 (lower is better)
Translates to: CKLVSHQACIKNCPLMGNICRQC*RALNTS
Trigger: AGATGTATTCAGGGCTCTGCAGCACTGTCTGCATAT...ATTTCCCATCAAAGGACAGTTCTTTATGCAGGCCTGGTGTGATACCAGTTTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR-3UTR CCA 90 bp TGCAAACTGGTATCACACCAGGCCTGCATAAAGAACTGTCCTTTGATGGGAAATCAGAAGACAGCCTTGTaGCATAGAAAATGCCAGTAT +
Preference number: 2 (lower is better)
Translates to: CKLVSHQACIKNCPLMGNQKTAL*HRKCQY
Trigger: ATACTGGCATTTTCTATGCCACAAGGCTGTCTTCTG...ATTTCCCATCAAAGGACAGTTCTTTATGCAGGCCTGGTGTGATACCAGTTTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR-3UTR TCA 90 bp TCCTTTGATGGGAAATTCAGGCCCCAACTGAGGAAAGACTTTCTTCCTATGGCAGATATTCAAACTAATTaGTCAGAAGACAGCCTTGTG +
Preference number: 2 (lower is better)
Translates to: SFDGKFRPQLRKDFLPMADIQTN*SEDSLV
Trigger: CACAAGGCTGTCTTCTGATCAATTAGTTTGAATATC...TGCCATAGGAAGAAAGTCTTTCCTCAGTTGGGGCCTGAATTTCCCATCAAAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR-3UTR CCA 90 bp GGTTCAAAACCTACAGGTTTCCCATCATATTTCACAAAGAGAAGTTTTATCACCACAGACAGACGCTTCTaGAGAATATGGAGGGAGAAC +
Preference number: 2 (lower is better)
Translates to: GSKPTGFPSYFTKRSFITTDRRF*RIWREN
Trigger: GTTCTCCCTCCATATTCTCCAGAAGCGTCTGTCTGT...GGTGATAAAACTTCTCTTTGTGAAATATGATGGGAAACCTGTAGGTTTTGAACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR-3UTR TCA 90 bp CAAAGAGAAGTTTTATCACCCAGTATATCTCTCAGATATAAATCCAGTCTCCATTCCTCTTGCTTTCTCTaGAAGGCTAGAGTTGAAGAG +
Preference number: 2 (lower is better)
Translates to: QREVLSPSISLRYKSSLHSSCFL*KARVEE
Trigger: CTCTTCAACTCTAGCCTTTCAGAGAAAGCAAGAGGA...ATGGAGACTGGATTTATATCTGAGAGATATACTGGGTGATAAAACTTCTCTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR-3UTR TCA 90 bp CAAAGAGAAGTTTTATCACCCAGTATATCTCTCAGATATAAATCCAGTCTCCATGGTAACTGTAAAAACTaGGACTGTGCTGTGGGAATA +
Preference number: 2 (lower is better)
Translates to: QREVLSPSISLRYKSSLHGNCKN*DCAVGI
Trigger: TATTCCCACAGCACAGTCTCAGTTTTTACAGTTACC...ATGGAGACTGGATTTATATCTGAGAGATATACTGGGTGATAAAACTTCTCTTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR-3UTR GCA 90 bp AAAGAGAAGTTTTATCACCCAGTATATCTCTCAGATATAAATCCAGTCTCCATCTTGTGGCATAGAAAATaGCAGTATCACTCATATTTC +
Preference number: 2 (lower is better)
Translates to: KEKFYHPVYLSDINPVSILWHRK*QYHSYF
Trigger: GAAATATGAGTGATACTGGCATTTTCTATGCCACAA...GATGGAGACTGGATTTATATCTGAGAGATATACTGGGTGATAAAACTTCTCTTT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR TCA 72 bp ATGTGGAACAGGAGGAAGATGGAAGCAACTAAAAAGTaGACCAGCACTTCCGGTCCTTCCATGGACAGAGGA +
Preference number: 3 (lower is better)
Translates to: MWNRRKMEATKK*TSTSGPSMDRG
Trigger: TCCTCTGTCCATGGAAGGACCGGAAGTGCTGGTTCACTTTTTAGTTGCTTCCATCTTCCTCCTGTTCCACAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
3UTR CCA 72 bp GTCAAAAGAGCTACAGACAGACGCTTCTGGAGAATATaGAGGGAGAACTCTTCCTCCTCCTCTTGCTTTCTC +
Preference number: 3 (lower is better)
Translates to: VKRATDRRFWRI*RENSSSSSCFL
Trigger: GAGAAAGCAAGAGGAGGAGGAAGAGTTCTCCCTCCATATTCTCCAGAAGCGTCTGTCTGTAGCTCTTTTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR-3UTR CAA 90 bp CCAGGCCTGCATAAAGAACTGTCCTTTGATGGGAAATTCAGGCCCCAACTGAGGGCAAGACTGTTGGAATaGTTCTGCCTTAAAGGTAAC +
Preference number: 3 (lower is better)
Translates to: PGLHKELSFDGKFRPQLRARLLE*FCLKGN
Trigger: GTTACCTTTAAGGCAGAACAATTCCAACAGTCTTGC...CCTCAGTTGGGGCCTGAATTTCCCATCAAAGGACAGTTCTTTATGCAGGCCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR TCA 72 bp TGGAGGGAGAACTCTTCCTCCTCCTCTTGCTTTCTCTaGAAGGCTAGAGTTGAAGAGGAATCCCAAACTTGT +
Preference number: 3 (lower is better)
Translates to: WRENSSSSSCFL*KARVEEESQTC
Trigger: ACAAGTTTGGGATTCCTCTTCAACTCTAGCCTTTCAGAGAAAGCAAGAGGAGGAGGAAGAGTTCTCCCTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR GCA 72 bp GCTTCCCAAATCTGCAAACTGGTATCACACCAGGCCTaGATAAAGAACTGTCCTTTGATGGGAAATTCAGGC +
Preference number: 3 (lower is better)
Translates to: ASQICKLVSHQA*IKNCPLMGNSG
Trigger: GCCTGAATTTCCCATCAAAGGACAGTTCTTTATGCAGGCCTGGTGTGATACCAGTTTGCAGATTTGGGAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR-3UTR CAA 90 bp GTTAGAAGCAGGGCAAGACTGTTGGAATTGTTCTGCCTTAAAGGTAACTGTAAAGATCAGAAGACAGCCTaGTGGCATAGAAAATGCCAG +
Preference number: 3 (lower is better)
Translates to: VRSRARLLELFCLKGNCKDQKTA*WHRKCQ
Trigger: CTGGCATTTTCTATGCCACAAGGCTGTCTTCTGATC...TTTACAGTTACCTTTAAGGCAGAACAATTCCAACAGTCTTGCCCTGCTTCTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR TCA 72 bp AAGAACTGTCCTTTGATGGGAAATTCAGGCCCCAACTaGGGAAAGACTTTCTTCCTATGGCATCCATACATT +
Preference number: 3 (lower is better)
Translates to: KNCPLMGNSGPN*GKTFFLWHPYI
Trigger: AATGTATGGATGCCATAGGAAGAAAGTCTTTCCTCAGTTGGGGCCTGAATTTCCCATCAAAGGACAGTTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR TCA 72 bp TTGGAATTGTTCTGCCTTAAAGGTAACTGTAAAAACTaGGACTGTGCTGTGGGAATAGATATGCAGACAGTG +
Preference number: 3 (lower is better)
Translates to: LELFCLKGNCKN*DCAVGIDMQTV
Trigger: CACTGTCTGCATATCTATTCCCACAGCACAGTCTCAGTTTTTACAGTTACCTTTAAGGCAGAACAATTCCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR-3UTR CAA 90 bp GGTTCAAAACCTACAGGTTTCCCATCATATTTCACAAAGAGAAGTTTTATCACCTCTGAAAGGCTAGAGTaGAAGAGGAATCCCAAACTT +
Preference number: 3 (lower is better)
Translates to: GSKPTGFPSYFTKRSFITSERLE*KRNPKL
Trigger: AAGTTTGGGATTCCTCTTCAACTCTAGCCTTTCAGA...GGTGATAAAACTTCTCTTTGTGAAATATGATGGGAAACCTGTAGGTTTTGAACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR-3UTR CAA 90 bp AAAGAGAAGTTTTATCACCCAGTATATCTCTCAGATATAAATCCAGTCTCCATCATAAAGAACTGTCCTTaGATGGGAAATTCAGGCCCC +
Preference number: 3 (lower is better)
Translates to: KEKFYHPVYLSDINPVSIIKNCP*MGNSGP
Trigger: GGGGCCTGAATTTCCCATCAAAGGACAGTTCTTTAT...GATGGAGACTGGATTTATATCTGAGAGATATACTGGGTGATAAAACTTCTCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR CCA 72 bp ATCCATACATTCCAGTTAGAAGCAGGGCAAGACTGTTaGAATTGTTCTGCCTTAAAGGTAACTGTAAAAACT +
Preference number: 3 (lower is better)
Translates to: IHTFQLEAGQDC*NCSALKVTVKT
Trigger: AGTTTTTACAGTTACCTTTAAGGCAGAACAATTCCAACAGTCTTGCCCTGCTTCTAACTGGAATGTATGGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
3UTR CCA 72 bp TGGATATTCAAACTAATTGATCAGAAGACAGCCTTGTaGCATAGAAAATGCCAGTATCACTCATATTTCAGT +
Preference number: 3 (lower is better)
Translates to: WIFKLIDQKTAL*HRKCQYHSYFS
Trigger: ACTGAAATATGAGTGATACTGGCATTTTCTATGCCACAAGGCTGTCTTCTGATCAATTAGTTTGAATATCCA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR GCA 90 bp CCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTAGCTCCACTAGTGCACCGAGCGGTTGGTaGCATCCTGCAGTGGCTGGA +
Preference number: 4 (lower is better)
Translates to: PCREGGGPGFPLTSSSTSAPSGW*HPAVAG
Trigger: TCCAGCCACTGCAGGATGGCACCAACCGCTCGGTGC...ACTAGTGGAGCTAGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCTCAGCACGGGTCCCTaGGGAGGAAGGGAGGAAGGG +
Preference number: 4 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFLSTGP*GGREEG
Trigger: CCCTTCCTCCCTTCCTCCTCAGGGACCCGTGCTGAG...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp CAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCGGTTGGTGCCATCCTaGAGTGGCTGGAGGCAGCGC +
Preference number: 4 (lower is better)
Translates to: QGPLQLGSFLLKNSLWRFRLVPS*SGWRQR
Trigger: GCGCTGCCTCCAGCCACTGCAGGATGGCACCAACCG...AAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTAGCTCCACTAGTCGTTCTCCAGGCTCCTaGACGGGTTTCCCCTTTCGA +
Preference number: 4 (lower is better)
Translates to: PCREGGGPGFPLTSSSTSRSPGS*TGFPFR
Trigger: TCGAAAGGGGAAACCCGTCCAGGAGCCTGGAGAACG...ACTAGTGGAGCTAGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp CCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTAGCTCCACTAGTCGATGGAAGGCAGCTTaGACTAGTGGCGCCATGACA +
Preference number: 4 (lower is better)
Translates to: PCREGGGPGFPLTSSSTSRWKAA*TSGAMT
Trigger: TGTCATGGCGCCACTAGTGCAAGCTGCCTTCCATCG...ACTAGTGGAGCTAGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCGCACCGAGCGGTTGGTaGCATCCTGCAGTGGCTGGA +
Preference number: 4 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFAPSGW*HPAVAG
Trigger: TCCAGCCACTGCAGGATGGCACCAACCGCTCGGTGC...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp CCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTAGCTCCACTAGTTCTTCCAGCCTGATGTaGTCTCTTCCGGGGGAAGTC +
Preference number: 4 (lower is better)
Translates to: PCREGGGPGFPLTSSSTSSSSLM*SLPGEV
Trigger: GACTTCCCCCGGAAGAGAGCACATCAGGCTGGAAGA...ACTAGTGGAGCTAGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp CCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTAGCTCCACTAGTCAACTTCTCACTGGGTaGCACATGCCAGTGACAGGA +
Preference number: 4 (lower is better)
Translates to: PCREGGGPGFPLTSSSTSQLLTG*HMPVTG
Trigger: TCCTGTCACTGGCATGTGTCACCCAGTGAGAAGTTG...ACTAGTGGAGCTAGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTGGCACTGCTGGGCCCTaGAGTCCTCAAAGTGCTTTT +
Preference number: 4 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSGTAGP*SPQSAF
Trigger: AAAAGCACTTTGAGGACTTCAGGGCCCAGCAGTGCC...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp CCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTAGCTCCACTAGTACATCTCTGGGAGGCTaGTCCACTGCTGATCTCTTG +
Preference number: 4 (lower is better)
Translates to: PCREGGGPGFPLTSSSTSTSLGG*STADLL
Trigger: CAAGAGATCAGCAGTGGAGCAGCCTCCCAGAGATGT...ACTAGTGGAGCTAGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp CAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTACACCAGGGCAGTCCTaGCCACCATTGATGGGCGTG +
Preference number: 4 (lower is better)
Translates to: QGPLQLGSFLLKNSLWRFTPGQS*PPLMGV
Trigger: CACGCCCATCAATGGTGGGCAGGACTGCCCTGGTGT...AAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTCAGCTTCTGCTACAGTaGTCCCATTCATCCGCTGCC +
Preference number: 4 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSQLLLQ*SHSSAA
Trigger: GGCAGCGGATGAATGGGAGCACTGTAGCAGAAGCTG...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp GCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTAGGCAGTACTTGCTGTaGACCGAGCGGTTGGTGCCA +
Preference number: 4 (lower is better)
Translates to: AGATAAGLFPSEKQSLALRQYLL*TERLVP
Trigger: TGGCACCAACCGCTCGGTGCACAGCAAGTACTGCCT...AAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp AGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTCTTCCAGCCTGATGTaGTCTCTTCCGGGGGAAGTC +
Preference number: 4 (lower is better)
Translates to: RQGPLQLGSFLLKNSLWRSSSLM*SLPGEV
Trigger: GACTTCCCCCGGAAGAGAGCACATCAGGCTGGAAGA...GCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp AAGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCGCTGTTGGCACTGCTaGGCCCTGAAGTCCTCAAAG +
Preference number: 4 (lower is better)
Translates to: KAGATAAGLFPSEKQSLARCWHC*ALKSSK
Trigger: CTTTGAGGACTTCAGGGCCCAGCAGTGCCAACAGCG...CGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp AGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTGTGAGTTACGCTGTTaGCACTGCTGGGCCCTGAAG +
Preference number: 4 (lower is better)
Translates to: RQGPLQLGSFLLKNSLWRCELRC*HCWALK
Trigger: CTTCAGGGCCCAGCAGTGCCAACAGCGTAACTCACA...GCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp AGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCCAGCCCCAGGAGCTATaGAGTGAGTGTTTGGCTTCA +
Preference number: 4 (lower is better)
Translates to: RQGPLQLGSFLLKNSLWRQPQEL*SECLAS
Trigger: TGAAGCCAAACACTCACTTCATAGCTCCTGGGGCTG...GCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp AGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCCAACTTCTCACTGGGTaGCACATGCCAGTGACAGGA +
Preference number: 4 (lower is better)
Translates to: RQGPLQLGSFLLKNSLWRQLLTG*HMPVTG
Trigger: TCCTGTCACTGGCATGTGTCACCCAGTGAGAAGTTG...GCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp AGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTATCGTTTCAGTTCCTaGCCGCTGCATCTGGACCAG +
Preference number: 4 (lower is better)
Translates to: RQGPLQLGSFLLKNSLWRYRFSS*PLHLDQ
Trigger: CTGGTCCAGATGCAGCGGTCAGGAACTGAAACGATA...GCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTTATCGTTTCAGTTCCTaGCCGCTGCATCTGGACCAG +
Preference number: 4 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSYRFSS*PLHLDQ
Trigger: CTGGTCCAGATGCAGCGGTCAGGAACTGAAACGATA...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp AGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCACATCTCTGGGAGGCTaGTCCACTGCTGATCTCTTG +
Preference number: 4 (lower is better)
Translates to: RQGPLQLGSFLLKNSLWRTSLGG*STADLL
Trigger: CAAGAGATCAGCAGTGGAGCAGCCTCCCAGAGATGT...GCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp AAGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGGCCCGTCATGCTCCATaGCCAACACATGGCCAGTTT +
Preference number: 4 (lower is better)
Translates to: KAGATAAGLFPSEKQSLAARHAP*PTHGQF
Trigger: AAACTGGCCATGTGTTGGGCATGGAGCATGACGGGC...CGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp AAGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGTTACGCTGTTGGCACTaGTGGGCCCTGAAGTCCTCA +
Preference number: 4 (lower is better)
Translates to: KAGATAAGLFPSEKQSLALRCWH*WALKSS
Trigger: TGAGGACTTCAGGGCCCAGCAGTGCCAACAGCGTAA...CGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp AGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCGGTATTCCCAGGCCTTaGAGCTGTCTCATGCCATTC +
Preference number: 4 (lower is better)
Translates to: RQGPLQLGSFLLKNSLWRGIPRP*SCLMPF
Trigger: GAATGGCATGAGACAGCTCCAAGGCCTGGGAATACC...GCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCGTTCTCCAGGCTCCTaGACGGGTTTCCCCTTTCGA +
Preference number: 4 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFRSPGS*TGFPFR
Trigger: TCGAAAGGGGAAACCCGTCCAGGAGCCTGGAGAACG...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCGCTGTTGGCACTGCTaGGCCCTGAAGTCCTCAAAG +
Preference number: 4 (lower is better)
Translates to: QGPLQLGSFLLKNSLWRFRCWHC*ALKSSK
Trigger: CTTTGAGGACTTCAGGGCCCAGCAGTGCCAACAGCG...AAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTAGCTCCACTAGTGTTGCTGTTGATCGTTaGCACCGAGTCTTCGTGGAT +
Preference number: 4 (lower is better)
Translates to: PCREGGGPGFPLTSSSTSVAVDR*HRVFVD
Trigger: ATCCACGAAGACTCGGTGCCAACGATCAACAGCAAC...ACTAGTGGAGCTAGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp GCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGACTCAGCACGGGTCCCTaGGGAGGAAGGGAGGAAGGG +
Preference number: 4 (lower is better)
Translates to: AAGLFPSEKQSLALSSNGLSTGP*GGREEG
Trigger: CCCTTCCTCCCTTCCTCCTCAGGGACCCGTGCTGAG...TCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp GCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTGGATCAGTTTTCTGTTaGTGGCAAGCCCATCGGCAC +
Preference number: 4 (lower is better)
Translates to: AGATAAGLFPSEKQSLALGSVFC*WQAHRH
Trigger: GTGCCGATGGGCTTGCCAGCAACAGAAAACTGATCC...AAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp CAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCGATGGAAGGCAGCTTaGACTAGTGGCGCCATGACA +
Preference number: 4 (lower is better)
Translates to: QGPLQLGSFLLKNSLWRFRWKAA*TSGAMT
Trigger: TGTCATGGCGCCACTAGTGCAAGCTGCCTTCCATCG...AAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp GCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTGTTTCTGGGGTCAGTaGTATTCCCAGGCCTTGGAG +
Preference number: 4 (lower is better)
Translates to: AGATAAGLFPSEKQSLALCFWGQ*YSQALE
Trigger: CTCCAAGGCCTGGGAATACCACTGACCCCAGAAACA...AAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp GCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTCTTCAGATACATCTCTaGGAGGCTGCTCCACTGCTG +
Preference number: 4 (lower is better)
Translates to: AGATAAGLFPSEKQSLALLQIHL*EAAPLL
Trigger: CAGCAGTGGAGCAGCCTCCCAGAGATGTATCTGAAG...AAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp AGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCGAAGTTCTGGGAGTTTaGGCCAGTCGTGTTCAAAGG +
Preference number: 4 (lower is better)
Translates to: RQGPLQLGSFLLKNSLWREVLGV*ASRVQR
Trigger: CCTTTGAACACGACTGGCCCAAACTCCCAGAACTTC...GCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTTTCACAGTTCGACAGTaGGAATTGTCCCCTCCACAG +
Preference number: 4 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSFTVRQ*ELSPPQ
Trigger: CTGTGGAGGGGACAATTCCCACTGTCGAACTGTGAA...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp AAGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGACTTATACGTCAGGCTaGAGCGCGTGTCGTTCTCCT +
Preference number: 4 (lower is better)
Translates to: KAGATAAGLFPSEKQSLATYTSG*SACRSP
Trigger: AGGAGAACGACACGCGCTCCAGCCTGACGTATAAGT...CGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp GCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTACTTATACGTCAGGCTaGAGCGCGTGTCGTTCTCCT +
Preference number: 4 (lower is better)
Translates to: AGATAAGLFPSEKQSLALTYTSG*SACRSP
Trigger: AGGAGAACGACACGCGCTCCAGCCTGACGTATAAGT...AAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp GCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTCCAGGAGCTATGAAGTaGGTGTTTGGCTTCAGTCGA +
Preference number: 4 (lower is better)
Translates to: AGATAAGLFPSEKQSLALPGAMK*VFGFSR
Trigger: TCGACTGAAGCCAAACACTCACTTCATAGCTCCTGG...AAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp AAGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCCAGGAGCTATGAAGTaGGTGTTTGGCTTCAGTCGA +
Preference number: 4 (lower is better)
Translates to: KAGATAAGLFPSEKQSLAPGAMK*VFGFSR
Trigger: TCGACTGAAGCCAAACACTCACTTCATAGCTCCTGG...CGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp AAGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGATCTATGAAGGTCCGTaGCTTGGCTTCCTCCCCTTT +
Preference number: 4 (lower is better)
Translates to: KAGATAAGLFPSEKQSLAIYEGP*LGFLPF
Trigger: AAAGGGGAGGAAGCCAAGTCACGGACCTTCATAGAT...CGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp GCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTGTCTTTCTTCCAGCCTaGTGTGCTCTCTTCCGGGGG +
Preference number: 4 (lower is better)
Translates to: ATAAGLFPSEKQSLALSSVFLPA*CALFRG
Trigger: CCCCCGGAAGAGAGCACATCAGGCTGGAAGAAAGAC...AGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp AGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTGGACATGCTCTTTaGCATGGAAACGGACCACAG +
Preference number: 4 (lower is better)
Translates to: RQGPLQLGSFLLKNSLWRFGHAL*HGNGPQ
Trigger: CTGTGGTCCGTTTCCATGGCAAAGAGCATGTCCAAA...GCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTAGGACCACATTTATATaGACTCCGAGGGACTCATCG +
Preference number: 4 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSRTTFI*TPRDSS
Trigger: CGATGAGTCCCTCGGAGTGCATATAAATGTGGTCCT...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp AGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCCTTCATGATTCAGGGTaGAACTTCTCACTGGGTGAC +
Preference number: 4 (lower is better)
Translates to: RQGPLQLGSFLLKNSLWRLHDSG*NFSLGD
Trigger: GTCACCCAGTGAGAAGTTGCACCCTGAATCATGAAG...GCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTGGTTATCAGGGTGGCTaGACCATAGCTGTTTACATG +
Preference number: 4 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSGYQGG*TIAVYM
Trigger: CATGTAAACAGCTATGGTGCAGCCACCCTGATAACC...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTCCCCAGTTGCCATCTTaGTTTTGCTGGTTAGCATTC +
Preference number: 4 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSPQLPS*FCWLAF
Trigger: GAATGCTAACCAGCAAAAGCAAGATGGCAACTGGGG...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp GCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAGGCAGTACTTGCTGTaGACCGAGCGGTTGGTGCCA +
Preference number: 4 (lower is better)
Translates to: ATAAGLFPSEKQSLALSSRQYLL*TERLVP
Trigger: TGGCACCAACCGCTCGGTGCACAGCAAGTACTGCCT...AGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp AAGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGGGCAACAGAGGTTCCTaGAATGTCCATGATGTCACC +
Preference number: 4 (lower is better)
Translates to: KAGATAAGLFPSEKQSLAGNRGS*NVHDVT
Trigger: GGTGACATCATGGACATTCCAGGAACCTCTGTTGCC...CGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp AAGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGTTCACAGTTCGACAGTaGGAATTGTCCCCTCCACAG +
Preference number: 4 (lower is better)
Translates to: KAGATAAGLFPSEKQSLAFTVRQ*ELSPPQ
Trigger: CTGTGGAGGGGACAATTCCCACTGTCGAACTGTGAA...CGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTGGCACCGAGTCTTCGTaGATGATGTACTTATACGTC +
Preference number: 4 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSGTESS*MMYLYV
Trigger: GACGTATAAGTACATCATCCACGAAGACTCGGTGCC...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp GCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTGTATCCAGCTCCTCCTaGATGACGTTGTTGCTGTTG +
Preference number: 4 (lower is better)
Translates to: AGATAAGLFPSEKQSLALVSSSS*MTLLLL
Trigger: CAACAGCAACAACGTCATCCAGGAGGAGCTGGATAC...AAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATGGTGCCATCCTGCAGTaGCTGGAGGCAGCGCACGGT +
Preference number: 4 (lower is better)
Translates to: QLGSFLLKNSLWRFLLMDGAILQ*LEAAHG
Trigger: ACCGTGCGCTGCCTCCAGCCACTGCAGGATGGCACC...ATCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTCTTGTCACCCAAACATaGCTCATCATTACAGGGAGG +
Preference number: 4 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSLVTQT*LIITGR
Trigger: CCTCCCTGTAATGATGAGCCATGTTTGGGTGACAAG...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTGGCTTCAGTCGAAGATaGAAATCTCTTCCAAATGCC +
Preference number: 4 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSGFSRR*KSLPNA
Trigger: GGCATTTGGAAGAGATTTTCATCTTCGACTGAAGCC...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp TACCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTCAGCCCCAGGAGCTATaGAGTGAGTGTTTGGCTTCA +
Preference number: 4 (lower is better)
Translates to: YHFLTSCMHHAGREAVQVQPQEL*SECLAS
Trigger: TGAAGCCAAACACTCACTTCATAGCTCCTGGGGCTG...AACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp GCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTGTTAAGAAAATTGCGTaGTCATGGTGTTCGGCGTGG +
Preference number: 4 (lower is better)
Translates to: AGATAAGLFPSEKQSLALVKKIA*SWCSAW
Trigger: CCACGCCGAACACCATGATCACGCAATTTTCTTAAC...AAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp CAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTATCTATGAAGGTCCGTaGCTTGGCTTCCTCCCCTTT +
Preference number: 4 (lower is better)
Translates to: QGPLQLGSFLLKNSLWRFIYEGP*LGFLPF
Trigger: AAAGGGGAGGAAGCCAAGTCACGGACCTTCATAGAT...AAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp CAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCCACACCAAGATCTATaGAGGTCCGTGACTTGGCTT +
Preference number: 4 (lower is better)
Translates to: QGPLQLGSFLLKNSLWRFPHQDL*RSVTWL
Trigger: AAGCCAAGTCACGGACCTTCATAGATCTTGGTGTGG...AAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTGCTAGCACCTCCATTTaGCAGAATATGGACTTGTCA +
Preference number: 4 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSASTSI*QNMDLS
Trigger: TGACAAGTCCATATTCTGTCAAATGGAGGTGCTAGC...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp AGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCGCTAGCACCTCCATTTaGCAGAATATGGACTTGTCA +
Preference number: 4 (lower is better)
Translates to: RQGPLQLGSFLLKNSLWRASTSI*QNMDLS
Trigger: TGACAAGTCCATATTCTGTCAAATGGAGGTGCTAGC...GCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp TACCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTATTTCAGCAGCTTCTTaGAGGTATGGCGGAGGCAGG +
Preference number: 4 (lower is better)
Translates to: YHFLTSCMHHAGREAVQVISAAS*RYGGGR
Trigger: CCTGCCTCCGCCATACCTTCAAGAAGCTGCTGAAAT...AACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp GCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGACTCTGCTGCTGGCTCTaGAGGCAGCATCCGCATTGG +
Preference number: 4 (lower is better)
Translates to: AAGLFPSEKQSLALSSNGLCCWL*RQHPHW
Trigger: CCAATGCGGATGCTGCCTTCAGAGCCAGCAGCAGAG...TCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp AAGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTCATGATTCAGGGTaGAACTTCTCACTGGGTGAC +
Preference number: 4 (lower is better)
Translates to: KAGATAAGLFPSEKQSLALHDSG*NFSLGD
Trigger: GTCACCCAGTGAGAAGTTGCACCCTGAATCATGAAG...CGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp AAGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCCCCAGTTGCCATCTTaGTTTTGCTGGTTAGCATTC +
Preference number: 4 (lower is better)
Translates to: KAGATAAGLFPSEKQSLAPQLPS*FCWLAF
Trigger: GAATGCTAACCAGCAAAAGCAAGATGGCAACTGGGG...CGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp GCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTCAGCTTCTGCTACAGTaGTCCCATTCATCCGCTGCC +
Preference number: 4 (lower is better)
Translates to: ATAAGLFPSEKQSLALSSQLLLQ*SHSSAA
Trigger: GGCAGCGGATGAATGGGAGCACTGTAGCAGAAGCTG...AGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTGTAGATGGCTGTTTCTaGGGTCAGTGGTATTCCCAG +
Preference number: 4 (lower is better)
Translates to: QGPLQLGSFLLKNSLWRFVDGCF*GQWYSQ
Trigger: CTGGGAATACCACTGACCCCAGAAACAGCCATCTAC...AAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCGGCAACAGAGGTTCCTaGAATGTCCATGATGTCACC +
Preference number: 4 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFGNRGS*NVHDVT
Trigger: GGTGACATCATGGACATTCCAGGAACCTCTGTTGCC...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp TACCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTAACAGGAGCCAAATTTaGTCCACGACCCCCAGTTGC +
Preference number: 4 (lower is better)
Translates to: YHFLTSCMHHAGREAVQVNRSQI*STTPSC
Trigger: GCAACTGGGGGTCGTGGACCAAATTTGGCTCCTGTT...AACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTAGCTCCACTAGTTATCCTCAACCTTGTTaGAGCCGATTTCTCTATCAC +
Preference number: 4 (lower is better)
Translates to: PCREGGGPGFPLTSSSTSYPQPC*SRFLYH
Trigger: GTGATAGAGAAATCGGCTCCAACAAGGTTGAGGATA...ACTAGTGGAGCTAGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTGAAGCCTCGTCTTCTTaGATTAACACATGTCTAGCC +
Preference number: 4 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSEASSS*INTCLA
Trigger: GGCTAGACATGTGTTAATCCAAGAAGACGAGGCTTC...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061427.10
CDS-3UTR CCA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCGTATCCAGCTCCTCCTaGATGACGTTGTTGCTGTTG +
Preference number: 4 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFVSSSS*MTLLLL
Trigger: CAACAGCAACAACGTCATCCAGGAGGAGCTGGATAC...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp GCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTTTTCTCCATCACAGTaGTCTCCAGTCCTGCACAGA +
Preference number: 4 (lower is better)
Translates to: AGATAAGLFPSEKQSLALFSPSQ*SPVLHR
Trigger: TCTGTGCAGGACTGGAGACCACTGTGATGGAGAAAA...AAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGC
52% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp CCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTAGCTCCACTAGTGGTGACCTCTTTTTGTaGTTTGCAGAAAGAATATGG +
Preference number: 4 (lower is better)
Translates to: PCREGGGPGFPLTSSSTSGDLFL*FAERIW
Trigger: CCATATTCTTTCTGCAAATCACAAAAAGAGGTCACC...ACTAGTGGAGCTAGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp TACCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTCTGGTAGTCAAAGTGTaGGTTACGCTGTTGGCACTG +
Preference number: 4 (lower is better)
Translates to: YHFLTSCMHHAGREAVQVLVVKV*VTLLAL
Trigger: CAGTGCCAACAGCGTAACTCACACTTTGACTACCAG...AACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp GCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTATTTCAGCAGCTTCTTaGAGGTATGGCGGAGGCAGG +
Preference number: 4 (lower is better)
Translates to: ATAAGLFPSEKQSLALSSISAAS*RYGGGR
Trigger: CCTGCCTCCGCCATACCTTCAAGAAGCTGCTGAAAT...AGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp CAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATCTCTGCTGCTGGCTCTaGAGGCAGCATCCGCATTGG +
Preference number: 4 (lower is better)
Translates to: QLGSFLLKNSLWRFLLMDLCCWL*RQHPHW
Trigger: CCAATGCGGATGCTGCCTTCAGAGCCAGCAGCAGAG...ATCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp CCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTAGCTCCACTAGTACGTTGAAGAACAAATaGTCTGAGTTAGATGACACG +
Preference number: 4 (lower is better)
Translates to: PCREGGGPGFPLTSSSTSTLKNK*SELDDT
Trigger: CGTGTCATCTAACTCAGAGCATTTGTTCTTCAACGT...ACTAGTGGAGCTAGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp GCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTTTTCTTCATCCATCTaGTTCCCTCTCTCCAAGGGT +
Preference number: 4 (lower is better)
Translates to: AGATAAGLFPSEKQSLALFSSSI*FPLSKG
Trigger: ACCCTTGGAGAGAGGGAAGCAGATGGATGAAGAAAA...AAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGC
51% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp GCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTTCCACGACCCCCAGTTaGCATCTTGCTTTTGCTGGT +
Preference number: 4 (lower is better)
Translates to: ATAAGLFPSEKQSLALSSSTTPS*HLAFAG
Trigger: ACCAGCAAAAGCAAGATGGCAACTGGGGGTCGTGGA...AGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp AGTCGATGTGGAACAGGAGGAAGATGGAAGCAACTAAAAAGTGAACCAGCACTTACACCAGGGCAGTCCTaGCCACCATTGATGGGCGTG +
Preference number: 4 (lower is better)
Translates to: SRCGTGGRWKQLKSEPALTPGQS*PPLMGV
Trigger: CACGCCCATCAATGGTGGGCAGGACTGCCCTGGTGT...AAGTGCTGGTTCACTTTTTAGTTGCTTCCATCTTCCTCCTGTTCCACATCGACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp AGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCCTCCTCGCACACATATaGTGTATGGATCTTTGTAAG +
Preference number: 4 (lower is better)
Translates to: RQGPLQLGSFLLKNSLWRLLAHI*CMDLCK
Trigger: CTTACAAAGATCCATACAGCATATGTGTGCGAGGAG...GCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTCTCCTCGCACACATATaGTGTATGGATCTTTGTAAG +
Preference number: 4 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSLLAHI*CMDLCK
Trigger: CTTACAAAGATCCATACAGCATATGTGTGCGAGGAG...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp TTTCTTCTAATGGATTCTGGTAAACAAGTCGATGTGGAACAGGAGGAAGATGGACGGTTGGTGCCATCCTaGAGTGGCTGGAGGCAGCGC +
Preference number: 4 (lower is better)
Translates to: FLLMDSGKQVDVEQEEDGRLVPS*SGWRQR
Trigger: GCGCTGCCTCCAGCCACTGCAGGATGGCACCAACCG...TCCATCTTCCTCCTGTTCCACATCGACTTGTTTACCAGAATCCATTAGAAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCACATGCTCTTTGCCATaGAAACGGACCACAGAGTCA +
Preference number: 4 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFTCSLP*KRTTES
Trigger: TGACTCTGTGGTCCGTTTCCATGGCAAAGAGCATGT...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp TTTCTTCTAATGGATTCTGGTAAACAAGTCGATGTGGAACAGGAGGAAGATGGAGGTGCCATCCTGCAGTaGCTGGAGGCAGCGCACGGT +
Preference number: 4 (lower is better)
Translates to: FLLMDSGKQVDVEQEEDGGAILQ*LEAAHG
Trigger: ACCGTGCGCTGCCTCCAGCCACTGCAGGATGGCACC...TCCATCTTCCTCCTGTTCCACATCGACTTGTTTACCAGAATCCATTAGAAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp GCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATTACAGGGAGGCAGCTaGCAGGGTCTGACAGACTCG +
Preference number: 4 (lower is better)
Translates to: AAGLFPSEKQSLALSSNGLQGGS*QGLTDS
Trigger: CGAGTCTGTCAGACCCTGCCAGCTGCCTCCCTGTAA...TCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp GCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAGCTTGTCCATCAGCTaGTGTCCTAACCTCTACCAG +
Preference number: 4 (lower is better)
Translates to: ATAAGLFPSEKQSLALSSSLSIS*CPNLYQ
Trigger: CTGGTAGAGGTTAGGACATCAGCTGATGGACAAGCT...AGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp GCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGACTCACCGCAGGTCACTaGACACTCATTCCAGGATCC +
Preference number: 4 (lower is better)
Translates to: AAGLFPSEKQSLALSSNGLTAGH*TLIPGS
Trigger: GGATCCTGGAATGAGTGTTCAGTGACCTGCGGTGAG...TCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp AGTCGATGTGGAACAGGAGGAAGATGGAAGCAACTAAAAAGTGAACCAGCACTTGTCTTTCTTCCAGCCTaGTGTGCTCTCTTCCGGGGG +
Preference number: 4 (lower is better)
Translates to: SRCGTGGRWKQLKSEPALVFLPA*CALFRG
Trigger: CCCCCGGAAGAGAGCACATCAGGCTGGAAGAAAGAC...AAGTGCTGGTTCACTTTTTAGTTGCTTCCATCTTCCTCCTGTTCCACATCGACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp TACCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTGGTTATCAGGGTGGCTaGACCATAGCTGTTTACATG +
Preference number: 4 (lower is better)
Translates to: YHFLTSCMHHAGREAVQVGYQGG*TIAVYM
Trigger: CATGTAAACAGCTATGGTGCAGCCACCCTGATAACC...AACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp GCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTCAACATAGGCACAGCTaGTCTGCAAAGGCTCTGATC +
Preference number: 4 (lower is better)
Translates to: ATAAGLFPSEKQSLALSSQHRHS*SAKALI
Trigger: GATCAGAGCCTTTGCAGACCAGCTGTGCCTATGTTG...AGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp AAGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGGCCCAAAGTCTTGCCTaGTTAAGAAAATTGCGTGAT +
Preference number: 4 (lower is better)
Translates to: KAGATAAGLFPSEKQSLAAQSLA*LRKLRD
Trigger: ATCACGCAATTTTCTTAACCAGGCAAGACTTTGGGC...CGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTGCAGCCAGTGGTGTTTaGTATTCTGGTAGTCAAAGT +
Preference number: 4 (lower is better)
Translates to: QGPLQLGSFLLKNSLWRFAASGV*YSGSQS
Trigger: ACTTTGACTACCAGAATACCAAACACCACTGGCTGC...AAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCGCAGCCAGTGGTGTTTaGTATTCTGGTAGTCAAAGT +
Preference number: 4 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFAASGV*YSGSQS
Trigger: ACTTTGACTACCAGAATACCAAACACCACTGGCTGC...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp GCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTGTTGCTGTTGATCGTTaGCACCGAGTCTTCGTGGAT +
Preference number: 4 (lower is better)
Translates to: ATAAGLFPSEKQSLALSSVAVDR*HRVFVD
Trigger: ATCCACGAAGACTCGGTGCCAACGATCAACAGCAAC...AGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCGCGTCTGATGGGTTTTaGCTTTTTATTGACCTCGCA +
Preference number: 4 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFASDGF*LFIDLA
Trigger: TGCGAGGTCAATAAAAAGCCAAAACCCATCAGACGC...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp TACCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTGTTTTCCACTGAGCTaGACAGGGCACTCTGTTACA +
Preference number: 4 (lower is better)
Translates to: YHFLTSCMHHAGREAVQVCFPLS*TGHSVT
Trigger: TGTAACAGAGTGCCCTGTCCAGCTCAGTGGAAAACA...AACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp TACCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTTTTCTCCATCACAGTaGTCTCCAGTCCTGCACAGA +
Preference number: 4 (lower is better)
Translates to: YHFLTSCMHHAGREAVQVFSPSQ*SPVLHR
Trigger: TCTGTGCAGGACTGGAGACCACTGTGATGGAGAAAA...AACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGGTA
50% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATTTACAGGGAGGCAGCTaGCAGGGTCTGACAGACTCG +
Preference number: 4 (lower is better)
Translates to: QLGSFLLKNSLWRFLLMDLQGGS*QGLTDS
Trigger: CGAGTCTGTCAGACCCTGCCAGCTGCCTCCCTGTAA...ATCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp CAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATGGCACTGCTGGGCCCTaGAGTCCTCAAAGTGCTTTT +
Preference number: 4 (lower is better)
Translates to: QLGSFLLKNSLWRFLLMDGTAGP*SPQSAF
Trigger: AAAAGCACTTTGAGGACTTCAGGGCCCAGCAGTGCC...ATCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp CAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATCTCACCGCAGGTCACTaGACACTCATTCCAGGATCC +
Preference number: 4 (lower is better)
Translates to: QLGSFLLKNSLWRFLLMDLTAGH*TLIPGS
Trigger: GGATCCTGGAATGAGTGTTCAGTGACCTGCGGTGAG...ATCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp GCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTTTTGGACATGCTCTTTaGCATGGAAACGGACCACAG +
Preference number: 4 (lower is better)
Translates to: ATAAGLFPSEKQSLALSSFGHAL*HGNGPQ
Trigger: CTGTGGTCCGTTTCCATGGCAAAGAGCATGTCCAAA...AGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp AAGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTGAAGTCCTCAAAGTaGTTTTGGCATTCTTCTGTA +
Preference number: 4 (lower is better)
Translates to: KAGATAAGLFPSEKQSLALKSSK*FWHSSV
Trigger: TACAGAAGAATGCCAAAAGCACTTTGAGGACTTCAG...CGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp CAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATTTACGCTGTTGGCACTaGTGGGCCCTGAAGTCCTCA +
Preference number: 4 (lower is better)
Translates to: QLGSFLLKNSLWRFLLMDLRCWH*WALKSS
Trigger: TGAGGACTTCAGGGCCCAGCAGTGCCAACAGCGTAA...ATCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp AGTCGATGTGGAACAGGAGGAAGATGGAAGCAACTAAAAAGTGAACCAGCACTTGAGTCGGGATGTTCATaGGGCAGCCAGTGGTGTTTG +
Preference number: 4 (lower is better)
Translates to: SRCGTGGRWKQLKSEPALESGCS*GSQWCL
Trigger: CAAACACCACTGGCTGCCGCATGAACATCCCGACTC...AAGTGCTGGTTCACTTTTTAGTTGCTTCCATCTTCCTCCTGTTCCACATCGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp CAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATGAGTCGGGATGTTCATaGGGCAGCCAGTGGTGTTTG +
Preference number: 4 (lower is better)
Translates to: QLGSFLLKNSLWRFLLMDESGCS*GSQWCL
Trigger: CAAACACCACTGGCTGCCGCATGAACATCCCGACTC...ATCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTGCTAACACTCTTTaGATCATCTTTCTTTGGGGT +
Preference number: 4 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFPANTL*IIFLWG
Trigger: ACCCCAAAGAAAGATGATGCAAAGAGTGTTAGCAGG...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp TCCTTTGATGGGAAATTCAGGCCCCAACTGAGGAAAGACTTTCTTCCTATGGCAGGTATTCCCAGGCCTTaGAGCTGTCTCATGCCATTC +
Preference number: 4 (lower is better)
Translates to: SFDGKFRPQLRKDFLPMAGIPRP*SCLMPF
Trigger: GAATGGCATGAGACAGCTCCAAGGCCTGGGAATACC...TGCCATAGGAAGAAAGTCTTTCCTCAGTTGGGGCCTGAATTTCCCATCAAAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR CCA 90 bp GCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGAGCACTTCCGTGTAGATaGCTGTTTCTGGGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: AAGLFPSEKQSLALSSNGALPCR*LFLGSV
Trigger: CACTGACCCCAGAAACAGCCATCTACACGGAAGTGC...TCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp GCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGAAATTCCGGGAAGTTCTaGGAGTTTGGGCCAGTCGTG +
Preference number: 4 (lower is better)
Translates to: AAGLFPSEKQSLALSSNGNSGKF*EFGPVV
Trigger: CACGACTGGCCCAAACTCCCAGAACTTCCCGGAATT...TCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCATCTTGCTTTTGCTaGTTAGCATTCTTCCACATG +
Preference number: 4 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFPSCFC*LAFFHM
Trigger: CATGTGGAAGAATGCTAACCAGCAAAAGCAAGATGG...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp AAGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGGTGGGATTATTGCATTaGCGTGTTCTAAAACGAACA +
Preference number: 4 (lower is better)
Translates to: KAGATAAGLFPSEKQSLAVGLLH*RVLKRT
Trigger: TGTTCGTTTTAGAACACGCCAATGCAATAATCCCAC...CGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp AGTCGATGTGGAACAGGAGGAAGATGGAAGCAACTAAAAAGTGAACCAGCACTTTGTGAGTTACGCTGTTaGCACTGCTGGGCCCTGAAG +
Preference number: 4 (lower is better)
Translates to: SRCGTGGRWKQLKSEPALCELRC*HCWALK
Trigger: CTTCAGGGCCCAGCAGTGCCAACAGCGTAACTCACA...AAGTGCTGGTTCACTTTTTAGTTGCTTCCATCTTCCTCCTGTTCCACATCGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp GCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTGGCACCGAGTCTTCGTaGATGATGTACTTATACGTC +
Preference number: 4 (lower is better)
Translates to: ATAAGLFPSEKQSLALSSGTESS*MMYLYV
Trigger: GACGTATAAGTACATCATCCACGAAGACTCGGTGCC...AGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp TACCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTTTGGGGTTCTTGTCTaGGGAGAAGCACCTATTGAA +
Preference number: 4 (lower is better)
Translates to: YHFLTSCMHHAGREAVQVFGVLV*GEAPIE
Trigger: TTCAATAGGTGCTTCTCCCCAGACAAGAACCCCAAA...AACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp GCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTGGCTTCAGTCGAAGATaGAAATCTCTTCCAAATGCC +
Preference number: 4 (lower is better)
Translates to: ATAAGLFPSEKQSLALSSGFSRR*KSLPNA
Trigger: GGCATTTGGAAGAGATTTTCATCTTCGACTGAAGCC...AGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp GCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGACTGGTAGTCAAAGTGTaGGTTACGCTGTTGGCACTG +
Preference number: 4 (lower is better)
Translates to: AAGLFPSEKQSLALSSNGLVVKV*VTLLAL
Trigger: CAGTGCCAACAGCGTAACTCACACTTTGACTACCAG...TCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp TGCAAACTGGTATCACACCAGGCCTGCATAAAGAACTGTCCTTTGATGGGAAATTGGGAGGCAAAGGCATaGAGGTCAGTGAACTCCAGA +
Preference number: 4 (lower is better)
Translates to: CKLVSHQACIKNCPLMGNWEAKA*RSVNSR
Trigger: TCTGGAGTTCACTGACCTTCATGCCTTTGCCTCCCA...ATTTCCCATCAAAGGACAGTTCTTTATGCAGGCCTGGTGTGATACCAGTTTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR GCA 90 bp GCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTGTTGGTAAATCTATTTaGACCATTTCGTCAGTACCA +
Preference number: 4 (lower is better)
Translates to: AGATAAGLFPSEKQSLALVGKSI*TISSVP
Trigger: TGGTACTGACGAAATGGTGCAAATAGATTTACCAAC...AAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp CAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTACGTTGAAGAACAAATaGTCTGAGTTAGATGACACG +
Preference number: 4 (lower is better)
Translates to: QGPLQLGSFLLKNSLWRFTLKNK*SELDDT
Trigger: CGTGTCATCTAACTCAGAGCATTTGTTCTTCAACGT...AAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp AGTCGATGTGGAACAGGAGGAAGATGGAAGCAACTAAAAAGTGAACCAGCACTTGGATCAGTTTTCTGTTaGTGGCAAGCCCATCGGCAC +
Preference number: 4 (lower is better)
Translates to: SRCGTGGRWKQLKSEPALGSVFC*WQAHRH
Trigger: GTGCCGATGGGCTTGCCAGCAACAGAAAACTGATCC...AAGTGCTGGTTCACTTTTTAGTTGCTTCCATCTTCCTCCTGTTCCACATCGACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATTGTTTCTGGGGTCAGTaGTATTCCCAGGCCTTGGAG +
Preference number: 4 (lower is better)
Translates to: QLGSFLLKNSLWRFLLMDCFWGQ*YSQALE
Trigger: CTCCAAGGCCTGGGAATACCACTGACCCCAGAAACA...ATCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CCTCCTCCTCTTGCTTTCTCTGAAAGGCTAGAGTTGAAGAGGAATCCCAAACTTGTAGATGGCTGTTTCTaGGGTCAGTGGTATTCCCAG +
Preference number: 4 (lower is better)
Translates to: PPPLAFSERLELKRNPKLVDGCF*GQWYSQ
Trigger: CTGGGAATACCACTGACCCCAGAAACAGCCATCTAC...AAGTTTGGGATTCCTCTTCAACTCTAGCCTTTCAGAGAAAGCAAGAGGAGGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR CCA 90 bp CATATGTCAAAAGAGCTACAGACAGACGCTTCTGGAGAATATGGAGGGAGAACTGCACTTCCGTGTAGATaGCTGTTTCTGGGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: HMSKELQTDASGEYGGRTALPCR*LFLGSV
Trigger: CACTGACCCCAGAAACAGCCATCTACACGGAAGTGC...AGTTCTCCCTCCATATTCTCCAGAAGCGTCTGTCTGTAGCTCTTTTGACATATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR CCA 90 bp GCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATCCATGCCCAACACATaGCCAGTTTCATGGGCTACT +
Preference number: 4 (lower is better)
Translates to: AAGLFPSEKQSLALSSNGSMPNT*PVSWAT
Trigger: AGTAGCCCATGAAACTGGCCATGTGTTGGGCATGGA...TCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTGTGGGATTATTGCATTaGCGTGTTCTAAAACGAACA +
Preference number: 4 (lower is better)
Translates to: QGPLQLGSFLLKNSLWRFVGLLH*RVLKRT
Trigger: TGTTCGTTTTAGAACACGCCAATGCAATAATCCCAC...AAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCACACATATGCTGTATaGATCTTTGTAAGAGCATCG +
Preference number: 4 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFHTYAV*IFVRAS
Trigger: CGATGCTCTTACAAAGATCCATACAGCATATGTGTG...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp AGTCGATGTGGAACAGGAGGAAGATGGAAGCAACTAAAAAGTGAACCAGCACTTAGCTTGTCCATCAGCTaGTGTCCTAACCTCTACCAG +
Preference number: 4 (lower is better)
Translates to: SRCGTGGRWKQLKSEPALSLSIS*CPNLYQ
Trigger: CTGGTAGAGGTTAGGACATCAGCTGATGGACAAGCT...AAGTGCTGGTTCACTTTTTAGTTGCTTCCATCTTCCTCCTGTTCCACATCGACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp GCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGAGTTAAGAAAATTGCGTaGTCATGGTGTTCGGCGTGG +
Preference number: 4 (lower is better)
Translates to: AAGLFPSEKQSLALSSNGVKKIA*SWCSAW
Trigger: CCACGCCGAACACCATGATCACGCAATTTTCTTAAC...TCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATCAACATAGGCACAGCTaGTCTGCAAAGGCTCTGATC +
Preference number: 4 (lower is better)
Translates to: QLGSFLLKNSLWRFLLMDQHRHS*SAKALI
Trigger: GATCAGAGCCTTTGCAGACCAGCTGTGCCTATGTTG...ATCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp GCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTGCCCAAAGTCTTGCCTaGTTAAGAAAATTGCGTGAT +
Preference number: 4 (lower is better)
Translates to: ATAAGLFPSEKQSLALSSAQSLA*LRKLRD
Trigger: ATCACGCAATTTTCTTAACCAGGCAAGACTTTGGGC...AGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp AGTCGATGTGGAACAGGAGGAAGATGGAAGCAACTAAAAAGTGAACCAGCACTTTCCATGCCCAACACATaGCCAGTTTCATGGGCTACT +
Preference number: 4 (lower is better)
Translates to: SRCGTGGRWKQLKSEPALSMPNT*PVSWAT
Trigger: AGTAGCCCATGAAACTGGCCATGTGTTGGGCATGGA...AAGTGCTGGTTCACTTTTTAGTTGCTTCCATCTTCCTCCTGTTCCACATCGACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp AGTCGATGTGGAACAGGAGGAAGATGGAAGCAACTAAAAAGTGAACCAGCACTTGAAGTTCTGGGAGTTTaGGCCAGTCGTGTTCAAAGG +
Preference number: 4 (lower is better)
Translates to: SRCGTGGRWKQLKSEPALEVLGV*ASRVQR
Trigger: CCTTTGAACACGACTGGCCCAAACTCCCAGAACTTC...AAGTGCTGGTTCACTTTTTAGTTGCTTCCATCTTCCTCCTGTTCCACATCGACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp GCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATGTTTTCCACTGAGCTaGACAGGGCACTCTGTTACA +
Preference number: 4 (lower is better)
Translates to: AAGLFPSEKQSLALSSNGCFPLS*TGHSVT
Trigger: TGTAACAGAGTGCCCTGTCCAGCTCAGTGGAAAACA...TCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp CAGTTAGAAGCAGGGCAAGACTGTTGGAATTGTTCTGCCTTAAAGGTAACTGTAAGCTTGTCCATCAGCTaGTGTCCTAACCTCTACCAG +
Preference number: 4 (lower is better)
Translates to: QLEAGQDCWNCSALKVTVSLSIS*CPNLYQ
Trigger: CTGGTAGAGGTTAGGACATCAGCTGATGGACAAGCT...TACAGTTACCTTTAAGGCAGAACAATTCCAACAGTCTTGCCCTGCTTCTAACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR TCA 90 bp GCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATTAATGGCAAGAACATaGGGAGAAGCCTCGTCTTCT +
Preference number: 4 (lower is better)
Translates to: AAGLFPSEKQSLALSSNGLMART*GEASSS
Trigger: AGAAGACGAGGCTTCTCCTCATGTTCTTGCCATTAA...TCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061427.10
CDS-3UTR GCA 90 bp AGTCGATGTGGAACAGGAGGAAGATGGAAGCAACTAAAAAGTGAACCAGCACTTAGGACCACATTTATATaGACTCCGAGGGACTCATCG +
Preference number: 4 (lower is better)
Translates to: SRCGTGGRWKQLKSEPALRTTFI*TPRDSS
Trigger: CGATGAGTCCCTCGGAGTGCATATAAATGTGGTCCT...AAGTGCTGGTTCACTTTTTAGTTGCTTCCATCTTCCTCCTGTTCCACATCGACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp TTTCTTCTAATGGATTCTGGTAAACAAGTCGATGTGGAACAGGAGGAAGATGGATCCACGACCCCCAGTTaGCATCTTGCTTTTGCTGGT +
Preference number: 4 (lower is better)
Translates to: FLLMDSGKQVDVEQEEDGSTTPS*HLAFAG
Trigger: ACCAGCAAAAGCAAGATGGCAACTGGGGGTCGTGGA...TCCATCTTCCTCCTGTTCCACATCGACTTGTTTACCAGAATCCATTAGAAGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp CAGTTAGAAGCAGGGCAAGACTGTTGGAATTGTTCTGCCTTAAAGGTAACTGTATGCAATAGCCATCTTTaGGCTGGGAGGCAAAGGCAT +
Preference number: 4 (lower is better)
Translates to: QLEAGQDCWNCSALKVTVCNSHL*AGRQRH
Trigger: ATGCCTTTGCCTCCCAGCGCAAAGATGGCTATTGCA...TACAGTTACCTTTAAGGCAGAACAATTCCAACAGTCTTGCCCTGCTTCTAACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR CCA 90 bp TTTCTTCTAATGGATTCTGGTAAACAAGTCGATGTGGAACAGGAGGAAGATGGAGGTATTCCCAGGCCTTaGAGCTGTCTCATGCCATTC +
Preference number: 4 (lower is better)
Translates to: FLLMDSGKQVDVEQEEDGGIPRP*SCLMPF
Trigger: GAATGGCATGAGACAGCTCCAAGGCCTGGGAATACC...TCCATCTTCCTCCTGTTCCACATCGACTTGTTTACCAGAATCCATTAGAAGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp TTTCTTCTAATGGATTCTGGTAAACAAGTCGATGTGGAACAGGAGGAAGATGGAGCACTTCCGTGTAGATaGCTGTTTCTGGGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: FLLMDSGKQVDVEQEEDGALPCR*LFLGSV
Trigger: CACTGACCCCAGAAACAGCCATCTACACGGAAGTGC...TCCATCTTCCTCCTGTTCCACATCGACTTGTTTACCAGAATCCATTAGAAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CATAAAGAACTGTCCTTTGATGGGAAATTCAGGCCCCAACTGAGGAAAGACTTTCAACATAGGCACAGCTaGTCTGCAAAGGCTCTGATC +
Preference number: 4 (lower is better)
Translates to: HKELSFDGKFRPQLRKDFQHRHS*SAKALI
Trigger: GATCAGAGCCTTTGCAGACCAGCTGTGCCTATGTTG...AAAGTCTTTCCTCAGTTGGGGCCTGAATTTCCCATCAAAGGACAGTTCTTTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR CCA 90 bp AGTCGATGTGGAACAGGAGGAAGATGGAAGCAACTAAAAAGTGAACCAGCACTTACATGCTCTTTGCCATaGAAACGGACCACAGAGTCA +
Preference number: 4 (lower is better)
Translates to: SRCGTGGRWKQLKSEPALTCSLP*KRTTES
Trigger: TGACTCTGTGGTCCGTTTCCATGGCAAAGAGCATGT...AAGTGCTGGTTCACTTTTTAGTTGCTTCCATCTTCCTCCTGTTCCACATCGACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp TTTCTTCTAATGGATTCTGGTAAACAAGTCGATGTGGAACAGGAGGAAGATGGAAATTCCGGGAAGTTCTaGGAGTTTGGGCCAGTCGTG +
Preference number: 4 (lower is better)
Translates to: FLLMDSGKQVDVEQEEDGNSGKF*EFGPVV
Trigger: CACGACTGGCCCAAACTCCCAGAACTTCCCGGAATT...TCCATCTTCCTCCTGTTCCACATCGACTTGTTTACCAGAATCCATTAGAAGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp TTTCTTCTAATGGATTCTGGTAAACAAGTCGATGTGGAACAGGAGGAAGATGGAAACAGGAGCCAAATTTaGTCCACGACCCCCAGTTGC +
Preference number: 4 (lower is better)
Translates to: FLLMDSGKQVDVEQEEDGNRSQI*STTPSC
Trigger: GCAACTGGGGGTCGTGGACCAAATTTGGCTCCTGTT...TCCATCTTCCTCCTGTTCCACATCGACTTGTTTACCAGAATCCATTAGAAGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp GCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATGCATCATCTTTCTTTaGGGTTCTTGTCTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: AAGLFPSEKQSLALSSNGCIIFL*GSCLGR
Trigger: TCTCCCCAGACAAGAACCCCAAAGAAAGATGATGCA...TCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATTATTACGAGCTCCTTTaGGTAAAACGAACGCGCCTC +
Preference number: 4 (lower is better)
Translates to: QLGSFLLKNSLWRFLLMDYYELL*VKRTRL
Trigger: GAGGCGCGTTCGTTTTACCCAAAGGAGCTCGTAATA...ATCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp CATATGTCAAAAGAGCTACAGACAGACGCTTCTGGAGAATATGGAGGGAGAACTGGCTTCAGTCGAAGATaGAAATCTCTTCCAAATGCC +
Preference number: 4 (lower is better)
Translates to: HMSKELQTDASGEYGGRTGFSRR*KSLPNA
Trigger: GGCATTTGGAAGAGATTTTCATCTTCGACTGAAGCC...AGTTCTCCCTCCATATTCTCCAGAAGCGTCTGTCTGTAGCTCTTTTGACATATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR GCA 90 bp AGTCGATGTGGAACAGGAGGAAGATGGAAGCAACTAAAAAGTGAACCAGCACTTTTTTCTTCATCCATCTaGTTCCCTCTCTCCAAGGGT +
Preference number: 4 (lower is better)
Translates to: SRCGTGGRWKQLKSEPALFSSSI*FPLSKG
Trigger: ACCCTTGGAGAGAGGGAAGCAGATGGATGAAGAAAA...AAGTGCTGGTTCACTTTTTAGTTGCTTCCATCTTCCTCCTGTTCCACATCGACT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp AGTCGATGTGGAACAGGAGGAAGATGGAAGCAACTAAAAAGTGAACCAGCACTTGCGTCTGATGGGTTTTaGCTTTTTATTGACCTCGCA +
Preference number: 4 (lower is better)
Translates to: SRCGTGGRWKQLKSEPALASDGF*LFIDLA
Trigger: TGCGAGGTCAATAAAAAGCCAAAACCCATCAGACGC...AAGTGCTGGTTCACTTTTTAGTTGCTTCCATCTTCCTCCTGTTCCACATCGACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATTTTGGGGTTCTTGTCTaGGGAGAAGCACCTATTGAA +
Preference number: 4 (lower is better)
Translates to: QLGSFLLKNSLWRFLLMDFGVLV*GEAPIE
Trigger: TTCAATAGGTGCTTCTCCCCAGACAAGAACCCCAAA...ATCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp TTTCTTCTAATGGATTCTGGTAAACAAGTCGATGTGGAACAGGAGGAAGATGGATTCCTGGAATGTCCATaGTGTCACCAACATAGGCAC +
Preference number: 4 (lower is better)
Translates to: FLLMDSGKQVDVEQEEDGFLECP*CHQHRH
Trigger: GTGCCTATGTTGGTGACATCATGGACATTCCAGGAA...TCCATCTTCCTCCTGTTCCACATCGACTTGTTTACCAGAATCCATTAGAAGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp CAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATCCTGCTAACACTCTTTaGATCATCTTTCTTTGGGGT +
Preference number: 4 (lower is better)
Translates to: QLGSFLLKNSLWRFLLMDPANTL*IIFLWG
Trigger: ACCCCAAAGAAAGATGATGCAAAGAGTGTTAGCAGG...ATCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATCCATCTTGCTTTTGCTaGTTAGCATTCTTCCACATG +
Preference number: 4 (lower is better)
Translates to: QLGSFLLKNSLWRFLLMDPSCFC*LAFFHM
Trigger: CATGTGGAAGAATGCTAACCAGCAAAAGCAAGATGG...ATCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp CAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATTATCCTCAACCTTGTTaGAGCCGATTTCTCTATCAC +
Preference number: 4 (lower is better)
Translates to: QLGSFLLKNSLWRFLLMDYPQPC*SRFLYH
Trigger: GTGATAGAGAAATCGGCTCCAACAAGGTTGAGGATA...ATCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp TGCAAACTGGTATCACACCAGGCCTGCATAAAGAACTGTCCTTTGATGGGAAATAGGTACAGATCATTCTaGGCAATCTTAGCAAAAGCC +
Preference number: 4 (lower is better)
Translates to: CKLVSHQACIKNCPLMGNRYRSF*AILAKA
Trigger: GGCTTTTGCTAAGATTGCCCAGAATGATCTGTACCT...ATTTCCCATCAAAGGACAGTTCTTTATGCAGGCCTGGTGTGATACCAGTTTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR TCA 90 bp GGTTCAAAACCTACAGGTTTCCCATCATATTTCACAAAGAGAAGTTTTATCACCCCAGGAGCTATGAAGTaGGTGTTTGGCTTCAGTCGA +
Preference number: 4 (lower is better)
Translates to: GSKPTGFPSYFTKRSFITPGAMK*VFGFSR
Trigger: TCGACTGAAGCCAAACACTCACTTCATAGCTCCTGG...GGTGATAAAACTTCTCTTTGTGAAATATGATGGGAAACCTGTAGGTTTTGAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR TCA 90 bp GAGAAGTTTTATCACCCAGTATATCTCTCAGATATAAATCCAGTCTCCATCTTTCAGCCCCAGGAGCTATaGAGTGAGTGTTTGGCTTCA +
Preference number: 4 (lower is better)
Translates to: EKFYHPVYLSDINPVSIFQPQEL*SECLAS
Trigger: TGAAGCCAAACACTCACTTCATAGCTCCTGGGGCTG...AAAGATGGAGACTGGATTTATATCTGAGAGATATACTGGGTGATAAAACTTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR GCA 90 bp TCCTTTGATGGGAAATTCAGGCCCCAACTGAGGAAAGACTTTCTTCCTATGGCAGTTGGTAAATCTATTTaGACCATTTCGTCAGTACCA +
Preference number: 4 (lower is better)
Translates to: SFDGKFRPQLRKDFLPMAVGKSI*TISSVP
Trigger: TGGTACTGACGAAATGGTGCAAATAGATTTACCAAC...TGCCATAGGAAGAAAGTCTTTCCTCAGTTGGGGCCTGAATTTCCCATCAAAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR GCA 90 bp CATAAAGAACTGTCCTTTGATGGGAAATTCAGGCCCCAACTGAGGAAAGACTTTAAGCATATGAGGACATaGAATAGCCATCTTTGCGCT +
Preference number: 4 (lower is better)
Translates to: HKELSFDGKFRPQLRKDFKHMRT*NSHLCA
Trigger: AGCGCAAAGATGGCTATTGCATGTCCTCATATGCTT...AAAGTCTTTCCTCAGTTGGGGCCTGAATTTCCCATCAAAGGACAGTTCTTTATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR CCA 90 bp GGTTCAAAACCTACAGGTTTCCCATCATATTTCACAAAGAGAAGTTTTATCACCGGCAACAGAGGTTCCTaGAATGTCCATGATGTCACC +
Preference number: 4 (lower is better)
Translates to: GSKPTGFPSYFTKRSFITGNRGS*NVHDVT
Trigger: GGTGACATCATGGACATTCCAGGAACCTCTGTTGCC...GGTGATAAAACTTCTCTTTGTGAAATATGATGGGAAACCTGTAGGTTTTGAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR CCA 90 bp TTTCTTCTAATGGATTCTGGTAAACAAGTCGATGTGGAACAGGAGGAAGATGGATGCATCATCTTTCTTTaGGGTTCTTGTCTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: FLLMDSGKQVDVEQEEDGCIIFL*GSCLGR
Trigger: TCTCCCCAGACAAGAACCCCAAAGAAAGATGATGCA...TCCATCTTCCTCCTGTTCCACATCGACTTGTTTACCAGAATCCATTAGAAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp GAGAAGTTTTATCACCCAGTATATCTCTCAGATATAAATCCAGTCTCCATCTTTGGAAGTCCAAGGGCTTaGGTCCTCTTCAAAAGTCAG +
Preference number: 4 (lower is better)
Translates to: EKFYHPVYLSDINPVSIFGSPRA*VLFKSQ
Trigger: CTGACTTTTGAAGAGGACTCAAGCCCTTGGACTTCC...AAAGATGGAGACTGGATTTATATCTGAGAGATATACTGGGTGATAAAACTTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR TCA 90 bp GAGAAGTTTTATCACCCAGTATATCTCTCAGATATAAATCCAGTCTCCATCTTTAGGCATGAAGGTCAGTaGACTCCAGAGGTACAGATC +
Preference number: 4 (lower is better)
Translates to: EKFYHPVYLSDINPVSIFRHEGQ*TPEVQI
Trigger: GATCTGTACCTCTGGAGTTCACTGACCTTCATGCCT...AAAGATGGAGACTGGATTTATATCTGAGAGATATACTGGGTGATAAAACTTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR GCA 90 bp AGTCGATGTGGAACAGGAGGAAGATGGAAGCAACTAAAAAGTGAACCAGCACTTGTTGGTAAATCTATTTaGACCATTTCGTCAGTACCA +
Preference number: 4 (lower is better)
Translates to: SRCGTGGRWKQLKSEPALVGKSI*TISSVP
Trigger: TGGTACTGACGAAATGGTGCAAATAGATTTACCAAC...AAGTGCTGGTTCACTTTTTAGTTGCTTCCATCTTCCTCCTGTTCCACATCGACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp AGTCGATGTGGAACAGGAGGAAGATGGAAGCAACTAAAAAGTGAACCAGCACTTGAGACTGATGGACTTTaGATAACCAAGCATAATCAT +
Preference number: 4 (lower is better)
Translates to: SRCGTGGRWKQLKSEPALETDGL*ITKHNH
Trigger: ATGATTATGCTTGGTTATGCAAAGTCCATCAGTCTC...AAGTGCTGGTTCACTTTTTAGTTGCTTCCATCTTCCTCCTGTTCCACATCGACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR GCA 90 bp CAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATGAGACTGATGGACTTTaGATAACCAAGCATAATCAT +
Preference number: 4 (lower is better)
Translates to: QLGSFLLKNSLWRFLLMDETDGL*ITKHNH
Trigger: ATGATTATGCTTGGTTATGCAAAGTCCATCAGTCTC...ATCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp TTTCTTCTAATGGATTCTGGTAAACAAGTCGATGTGGAACAGGAGGAAGATGGAGGTGACCTCTTTTTGTaGTTTGCAGAAAGAATATGG +
Preference number: 4 (lower is better)
Translates to: FLLMDSGKQVDVEQEEDGGDLFL*FAERIW
Trigger: CCATATTCTTTCTGCAAATCACAAAAAGAGGTCACC...TCCATCTTCCTCCTGTTCCACATCGACTTGTTTACCAGAATCCATTAGAAGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR TCA 90 bp AAAGAGAAGTTTTATCACCCAGTATATCTCTCAGATATAAATCCAGTCTCCATCTTCCTGGAATGTCCATaGTGTCACCAACATAGGCAC +
Preference number: 4 (lower is better)
Translates to: KEKFYHPVYLSDINPVSIFLECP*CHQHRH
Trigger: GTGCCTATGTTGGTGACATCATGGACATTCCAGGAA...GATGGAGACTGGATTTATATCTGAGAGATATACTGGGTGATAAAACTTCTCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR GCA 90 bp TTTCTTCTAATGGATTCTGGTAAACAAGTCGATGTGGAACAGGAGGAAGATGGACTGAAGTCCTCAAAGTaGTTTTGGCATTCTTCTGTA +
Preference number: 4 (lower is better)
Translates to: FLLMDSGKQVDVEQEEDGLKSSK*FWHSSV
Trigger: TACAGAAGAATGCCAAAAGCACTTTGAGGACTTCAG...TCCATCTTCCTCCTGTTCCACATCGACTTGTTTACCAGAATCCATTAGAAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CCA 90 bp TTTCTTCTAATGGATTCTGGTAAACAAGTCGATGTGGAACAGGAGGAAGATGGACACACATATGCTGTATaGATCTTTGTAAGAGCATCG +
Preference number: 4 (lower is better)
Translates to: FLLMDSGKQVDVEQEEDGHTYAV*IFVRAS
Trigger: CGATGCTCTTACAAAGATCCATACAGCATATGTGTG...TCCATCTTCCTCCTGTTCCACATCGACTTGTTTACCAGAATCCATTAGAAGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 90 bp GCAGTGGCTGGAGGCAGCGCACGGTGCGCAGCTGGTTCCCGGAGCTaGCACAGCTTCTGCTACAGTGCTCCCATTCATCCGCTGCCCAGA +
Preference number: 5 (lower is better)
Translates to: AVAGGSARCAAGSRS*HSFCYSAPIHPLPR
Trigger: TCTGGGCAGCGGATGAATGGGAGCACTGTAGCAGAAGCTGTGGCAGCTCCGGGAACCAGCTGCGCACCGTGCGCTGCCTCCAGCCACTGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTAGCTCCACTAGTGTCCACGACCCCCAGTaGCCATCTTGCTTTTGCTGG +
Preference number: 5 (lower is better)
Translates to: PCREGGGPGFPLTSSSTSVHDPQ*PSCFCW
Trigger: CCAGCAAAAGCAAGATGGCAACTGGGGGTCGTGGAC...ACTAGTGGAGCTAGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS TCA 90 bp TCACCGCAGGTCACTGAACACTCATTCCAGGATCCTGTTTTCCACTaGGCTGGACAGGGCACTCTGTTACAGGGCCGGCGGCTCTCAGGA +
Preference number: 5 (lower is better)
Translates to: SPQVTEHSFQDPVFH*AGQGTLLQGRRLSG
Trigger: TCCTGAGAGCCGCCGGCCCTGTAACAGAGTGCCCTGTCCAGCTCAGTGGAAAACAGGATCCTGGAATGAGTGTTCAGTGACCTGCGGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 90 bp GGGCAGCAGCCACAGGGGAGGCGGGACGAAGGTGATCAGTCTTTATaGATGAGGAGGATGGCACTGACTCCAGAGTCTTTCTTCCAGCCT +
Preference number: 5 (lower is better)
Translates to: GQQPQGRRDEGDQSL*MRRMALTPESFFQP
Trigger: AGGCTGGAAGAAAGACTCTGGAGTCAGTGCCATCCTCCTCATCCATAAAGACTGATCACCTTCGTCCCGCCTCCCCTGTGGCTGCTGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTGTCTGCGGCGCCGCATaGTCTTGTTCAGCTGCTGGC +
Preference number: 5 (lower is better)
Translates to: QGPLQLGSFLLKNSLWRFVCGAA*SCSAAG
Trigger: GCCAGCAGCTGAACAAGACAATGCGGCGCCGCAGAC...AAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS TCA 90 bp CACCCAAACATGGCTCATCATTACAGGGAGGCAGCTGGCAGGGTCTaGCAGACTCGGGCTTTTCTCCATCACAGTGGTCTCCAGTCCTGC +
Preference number: 5 (lower is better)
Translates to: HPNMAHHYREAAGRV*QTRAFLHHSGLQSC
Trigger: GCAGGACTGGAGACCACTGTGATGGAGAAAAGCCCGAGTCTGTCAGACCCTGCCAGCTGCCTCCCTGTAATGATGAGCCATGTTTGGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTAGCTCCACTAGTTCCTCCTGGATGACGTaGTTGCTGTTGATCGTTGGC +
Preference number: 5 (lower is better)
Translates to: PCREGGGPGFPLTSSSTSSSWMT*LLLIVG
Trigger: GCCAACGATCAACAGCAACAACGTCATCCAGGAGGA...ACTAGTGGAGCTAGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS TCA 90 bp ATGGATGAGGAGGATGGCACTGACTCCAGAGTCTTTCTTCCAGCCTaGTGTGCTCTCTTCCGGGGGAAGTCAGCACTAGCTCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: MDEEDGTDSRVFLPA*CALFRGKSALALLL
Trigger: CAGCAGCAGAGCTAGTGCTGACTTCCCCCGGAAGAGAGCACATCAGGCTGGAAGAAAGACTCTGGAGTCAGTGCCATCCTCCTCATCCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 90 bp CTCCCAGAAGCACCTCGATGTTGTAATCGTTCTCTCCCGTGTGTCTaGGGCGCCGCATTGTCTTGTTCAGCTGCTGGCCAATGTTGCTGT +
Preference number: 5 (lower is better)
Translates to: LPEAPRCCNRSLPCV*GAALSCSAAGQCCC
Trigger: ACAGCAACATTGGCCAGCAGCTGAACAAGACAATGCGGCGCCGCAGACACACGGGAGAGAACGATTACAACATCGAGGTGCTTCTGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCGTCCACGACCCCCAGTaGCCATCTTGCTTTTGCTGG +
Preference number: 5 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFVHDPQ*PSCFCW
Trigger: CCAGCAAAAGCAAGATGGCAACTGGGGGTCGTGGAC...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTTCCTGGATGACGTTGTaGCTGTTGATCGTTGGCACC +
Preference number: 5 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSSWMTL*LLIVGT
Trigger: GGTGCCAACGATCAACAGCAACAACGTCATCCAGGA...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 90 bp TGTGTCTGCGGCGCCGCATTGTCTTGTTCAGCTGCTGGCCAATGTTaGTGTAAACTGTACCTAGATCGTCAAGGCCTTCCAGGTCCGACT +
Preference number: 5 (lower is better)
Translates to: CVCGAALSCSAAGQC*CKLYLDRQGLPGPT
Trigger: AGTCGGACCTGGAAGGCCTTGACGATCTAGGTACAGTTTACAGCAACATTGGCCAGCAGCTGAACAAGACAATGCGGCGCCGCAGACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTAGCTCCACTAGTCCAAATGCCGTGACGTaGAAGAACAAATGCTCTGAG +
Preference number: 5 (lower is better)
Translates to: PCREGGGPGFPLTSSSTSPNAVT*KNKCSE
Trigger: CTCAGAGCATTTGTTCTTCAACGTCACGGCATTTGG...ACTAGTGGAGCTAGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp AAGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGTGGTATTCCCAGGCCTaGGAGCTGTCTCATGCCATT +
Preference number: 5 (lower is better)
Translates to: KAGATAAGLFPSEKQSLAWYSQA*ELSHAI
Trigger: AATGGCATGAGACAGCTCCAAGGCCTGGGAATACCA...CGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTGCCAGACCATCACAGTaGCTAATGGCAACAGAGGTT +
Preference number: 5 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSARPSQ*LMATEV
Trigger: AACCTCTGTTGCCATTAGCAACTGTGATGGTCTGGC...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTAGCTCCACTAGTTTTTGGACATGCTCTTaGCCATGGAAACGGACCACA +
Preference number: 5 (lower is better)
Translates to: PCREGGGPGFPLTSSSTSFWTCS*PWKRTT
Trigger: TGTGGTCCGTTTCCATGGCAAAGAGCATGTCCAAAA...ACTAGTGGAGCTAGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCGAACAGGAGCCAAATTaGGTCCACGACCCCCAGTTG +
Preference number: 5 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFEQEPN*VHDPQL
Trigger: CAACTGGGGGTCGTGGACCAAATTTGGCTCCTGTTC...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp AAGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGGATTTCAGCAGCTTCTaGAAGGTATGGCGGAGGCAG +
Preference number: 5 (lower is better)
Translates to: KAGATAAGLFPSEKQSLADFSSF*KVWRRQ
Trigger: CTGCCTCCGCCATACCTTCAAGAAGCTGCTGAAATC...CGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTAGCTCCACTAGTTTGCATCATCTTTCTTaGGGGTTCTTGTCTGGGGAG +
Preference number: 5 (lower is better)
Translates to: PCREGGGPGFPLTSSSTSLHHLS*GFLSGE
Trigger: CTCCCCAGACAAGAACCCCAAAGAAAGATGATGCAA...ACTAGTGGAGCTAGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTGTAGTGACCTGTGGCTaGATTCTTAATGGCCAGGAC +
Preference number: 5 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSVVTCG*ILNGQD
Trigger: GTCCTGGCCATTAAGAATCAAGCCACAGGTCACTAC...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163159.8
CDS GCA 90 bp ACTAGCTCTGCTGCTGGCTCTGAAGGCAGCATCCGCATTGGGGTTTaGCATGGAAGAGAAGCTACTCAAGGATTTCTTCTCAGCACGGGT +
Preference number: 5 (lower is better)
Translates to: TSSAAGSEGSIRIGV*HGREATQGFLLSTG
Trigger: ACCCGTGCTGAGAAGAAATCCTTGAGTAGCTTCTCTTCCATGGCAAACCCCAATGCGGATGCTGCCTTCAGAGCCAGCAGCAGAGCTAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 90 bp AAAGGCTCTGATCTCCAGCTTCCTTCTGAAGCACTTCCGTGTAGATaGCTGTTTCTGGGGTCAGTGGTATTCCCAGGCCTTGGAGCTGTC +
Preference number: 5 (lower is better)
Translates to: KGSDLQLPSEALPCR*LFLGSVVFPGLGAV
Trigger: GACAGCTCCAAGGCCTGGGAATACCACTGACCCCAGAAACAGCCATCTACACGGAAGTGCTTCAGAAGGAAGCTGGAGATCAGAGCCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
ENSMUST00000198151.2
CDS CCA 90 bp TCCTGGATGACGTTGTTGCTGTTGATCGTTGGCACCGAGTCTTCGTaGATGATGTACTTATACGTCAGGCTGGAGCGCGTGTCGTTCTCC +
Preference number: 5 (lower is better)
Translates to: SWMTLLLLIVGTESS*MMYLYVRLERVSFS
Trigger: GGAGAACGACACGCGCTCCAGCCTGACGTATAAGTACATCATCCACGAAGACTCGGTGCCAACGATCAACAGCAACAACGTCATCCAGGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTGGTGAGGAGGTAATTTaGGACATGCTCTTTGCCATG +
Preference number: 5 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSGEEVI*DMLFAM
Trigger: CATGGCAAAGAGCATGTCCAAAATTACCTCCTCACC...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp AGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCGGTGAGGAGGTAATTTaGGACATGCTCTTTGCCATG +
Preference number: 5 (lower is better)
Translates to: RQGPLQLGSFLLKNSLWRGEEVI*DMLFAM
Trigger: CATGGCAAAGAGCATGTCCAAAATTACCTCCTCACC...GCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCGGAAGTTCTGGGAGTTaGGGCCAGTCGTGTTCAAAG +
Preference number: 5 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFGSSGS*GQSCSK
Trigger: CTTTGAACACGACTGGCCCAAACTCCCAGAACTTCC...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp AGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTCCGTCGTGCACCAGTaGTTTCATGTAAGCAACATC +
Preference number: 5 (lower is better)
Translates to: RQGPLQLGSFLLKNSLWRSVVHQ*FHVSNI
Trigger: GATGTTGCTTACATGAAACAACTGGTGCACGACGGA...GCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp TACCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTATGAAGGTCCGTGACTaGGCTTCCTCCCCTTTGCCA +
Preference number: 5 (lower is better)
Translates to: YHFLTSCMHHAGREAVQVMKVRD*ASSPLP
Trigger: TGGCAAAGGGGAGGAAGCCAAGTCACGGACCTTCAT...AACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTTCCTGGATGACGTTGTaGCTGTTGATCGTTGGCACC +
Preference number: 5 (lower is better)
Translates to: QGPLQLGSFLLKNSLWRFSWMTL*LLIVGT
Trigger: GGTGCCAACGATCAACAGCAACAACGTCATCCAGGA...AAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCTCCTCCTGGATGACGTaGTTGCTGTTGATCGTTGGC +
Preference number: 5 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFSSWMT*LLLIVG
Trigger: GCCAACGATCAACAGCAACAACGTCATCCAGGAGGA...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp AGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCATATTACGAGCTCCTTaGGGTAAAACGAACGCGCCT +
Preference number: 5 (lower is better)
Translates to: RQGPLQLGSFLLKNSLWRILRAP*GKTNAP
Trigger: AGGCGCGTTCGTTTTACCCAAAGGAGCTCGTAATAT...GCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000163159.8
CDS GCA 90 bp CAGCAGCTTCTTGAAGGTATGGCGGAGGCAGGGTACCACTGCGCTTaGTACATGATTCGCAGCATAACTTGTTATACCCTGGTATGGAGC +
Preference number: 5 (lower is better)
Translates to: QQLLEGMAEAGYHCA*YMIRSITCYTLVWS
Trigger: GCTCCATACCAGGGTATAACAAGTTATGCTGCGAATCATGTAGCAAGCGCAGTGGTACCCTGCCTCCGCCATACCTTCAAGAAGCTGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 90 bp ATCTCCAGCTTCCTTCTGAAGCACTTCCGTGTAGATGGCTGTTTCTaGGGTCAGTGGTATTCCCAGGCCTTGGAGCTGTCTCATGCCATT +
Preference number: 5 (lower is better)
Translates to: ISSFLLKHFRVDGCF*GQWYSQALELSHAI
Trigger: AATGGCATGAGACAGCTCCAAGGCCTGGGAATACCACTGACCCCAGAAACAGCCATCTACACGGAAGTGCTTCAGAAGGAAGCTGGAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
ENSMUST00000198151.2
CDS-3UTR CAA 90 bp GCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTCCAAATGCCGTGACGTaGAAGAACAAATGCTCTGAG +
Preference number: 5 (lower is better)
Translates to: AGATAAGLFPSEKQSLALPNAVT*KNKCSE
Trigger: CTCAGAGCATTTGTTCTTCAACGTCACGGCATTTGG...AAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCGCCAGACCATCACAGTaGCTAATGGCAACAGAGGTT +
Preference number: 5 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFARPSQ*LMATEV
Trigger: AACCTCTGTTGCCATTAGCAACTGTGATGGTCTGGC...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp AGTCGATGTGGAACAGGAGGAAGATGGAAGCAACTAAAAAGTGAACCAGCACTTGTCTGCGGCGCCGCATaGTCTTGTTCAGCTGCTGGC +
Preference number: 5 (lower is better)
Translates to: SRCGTGGRWKQLKSEPALVCGAA*SCSAAG
Trigger: GCCAGCAGCTGAACAAGACAATGCGGCGCCGCAGAC...AAGTGCTGGTTCACTTTTTAGTTGCTTCCATCTTCCTCCTGTTCCACATCGACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp GCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTTTTGGACATGCTCTTaGCCATGGAAACGGACCACA +
Preference number: 5 (lower is better)
Translates to: AGATAAGLFPSEKQSLALFWTCS*PWKRTT
Trigger: TGTGGTCCGTTTCCATGGCAAAGAGCATGTCCAAAA...AAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGC
52% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp AAGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGGCCTGGTTAAGAAAATaGCGTGATCATGGTGTTCGG +
Preference number: 5 (lower is better)
Translates to: KAGATAAGLFPSEKQSLAAWLRK*RDHGVR
Trigger: CCGAACACCATGATCACGCAATTTTCTTAACCAGGC...CGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTATGGGCGTGGGATTATaGCATTGGCGTGTTCTAAAA +
Preference number: 5 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSMGVGL*HWRVLK
Trigger: TTTTAGAACACGCCAATGCAATAATCCCACGCCCAT...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTGATTCGCAGCATAACTaGTTATACCCTGGTATGGAG +
Preference number: 5 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSDSQHN*LYPGME
Trigger: CTCCATACCAGGGTATAACAAGTTATGCTGCGAATC...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCTTTCTTTGGGGTTCTaGTCTGGGGAGAAGCACCTA +
Preference number: 5 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFLSLGF*SGEKHL
Trigger: TAGGTGCTTCTCCCCAGACAAGAACCCCAAAGAAAG...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS TCA 90 bp TGGATGATGTACTTATACGTCAGGCTGGAGCGCGTGTCGTTCTCCTaGGGTATGATCAGAACAATAACGGGGTCATGTAGCGGGCCATCT +
Preference number: 5 (lower is better)
Translates to: WMMYLYVRLERVSFS*GMIRTITGSCSGPS
Trigger: AGATGGCCCGCTACATGACCCCGTTATTGTTCTGATCATACCTCAGGAGAACGACACGCGCTCCAGCCTGACGTATAAGTACATCATCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS TCA 90 bp TCACTAGGGCCAAAGATAGCATCACTGTGGATTTCAGCAGCTTCTTaGAGGTATGGCGGAGGCAGGGTACCACTGCGCTTGCTACATGAT +
Preference number: 5 (lower is better)
Translates to: SLGPKIASLWISAAS*RYGGGRVPLRLLHD
Trigger: ATCATGTAGCAAGCGCAGTGGTACCCTGCCTCCGCCATACCTTCAAGAAGCTGCTGAAATCCACAGTGATGCTATCTTTGGCCCTAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 90 bp GGAGGCAGTCATAGGAATGGATGTATCGTTTCAGTTCCTGACCGCTaGATCTGGACCAGTGATAACGATGGAAGGCAGCTTGCACTAGTG +
Preference number: 5 (lower is better)
Translates to: GGSHRNGCIVSVPDR*IWTSDNDGRQLALV
Trigger: CACTAGTGCAAGCTGCCTTCCATCGTTATCACTGGTCCAGATGCAGCGGTCAGGAACTGAAACGATACATCCATTCCTATGACTGCCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 90 bp CATCCCAGCCAGACCATCACAGTTGCTAATGGCAACAGAGGTTCCTaGAATGTCCATGATGTCACCAACATAGGCACAGCTGGTCTGCAA +
Preference number: 5 (lower is better)
Translates to: HPSQTITVANGNRGS*NVHDVTNIGTAGLQ
Trigger: TTGCAGACCAGCTGTGCCTATGTTGGTGACATCATGGACATTCCAGGAACCTCTGTTGCCATTAGCAACTGTGATGGTCTGGCTGGGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 90 bp CTTGCCTGGTTAAGAAAATTGCGTGATCATGGTGTTCGGCGTGGTTaGGATCAGTTTTCTGTTGCTGGCAAGCCCATCGGCACACGTTCT +
Preference number: 5 (lower is better)
Translates to: LAWLRKLRDHGVRRG*DQFSVAGKPIGTRS
Trigger: AGAACGTGTGCCGATGGGCTTGCCAGCAACAGAAAACTGATCCCAACCACGCCGAACACCATGATCACGCAATTTTCTTAACCAGGCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 90 bp GAAGGTATCCAGCTCCTCCTGGATGACGTTGTTGCTGTTGATCGTTaGCACCGAGTCTTCGTGGATGATGTACTTATACGTCAGGCTGGA +
Preference number: 5 (lower is better)
Translates to: EGIQLLLDDVVAVDR*HRVFVDDVLIRQAG
Trigger: TCCAGCCTGACGTATAAGTACATCATCCACGAAGACTCGGTGCCAACGATCAACAGCAACAACGTCATCCAGGAGGAGCTGGATACCTTC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCGCCTGGTTAAGAAAATaGCGTGATCATGGTGTTCGG +
Preference number: 5 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFAWLRK*RDHGVR
Trigger: CCGAACACCATGATCACGCAATTTTCTTAACCAGGC...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp TACCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTCTTTCTTTGGGGTTCTaGTCTGGGGAGAAGCACCTA +
Preference number: 5 (lower is better)
Translates to: YHFLTSCMHHAGREAVQVLSLGF*SGEKHL
Trigger: TAGGTGCTTCTCCCCAGACAAGAACCCCAAAGAAAG...AACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTTTGCATCATCTTTCTTaGGGGTTCTTGTCTGGGGAG +
Preference number: 5 (lower is better)
Translates to: QGPLQLGSFLLKNSLWRFLHHLS*GFLSGE
Trigger: CTCCCCAGACAAGAACCCCAAAGAAAGATGATGCAA...AAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS TCA 90 bp GCCTTGGAGCTGTCTCATGCCATTCCACCACAGCCCCAGGAGCTATaGAGTGAGTGTTTGGCTTCAGTCGAAGATGAAAATCTCTTCCAA +
Preference number: 5 (lower is better)
Translates to: ALELSHAIPPQPQEL*SECLASVEDENLFQ
Trigger: TTGGAAGAGATTTTCATCTTCGACTGAAGCCAAACACTCACTTCATAGCTCCTGGGGCTGTGGTGGAATGGCATGAGACAGCTCCAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
ENSMUST00000198151.2
CDS GCA 90 bp GGATTTCAGCAGCTTCTTGAAGGTATGGCGGAGGCAGGGTACCACTaGGCTTGCTACATGATTCGCAGCATAACTTGTTATACCCTGGTA +
Preference number: 5 (lower is better)
Translates to: GFQQLLEGMAEAGYH*ACYMIRSITCYTLV
Trigger: TACCAGGGTATAACAAGTTATGCTGCGAATCATGTAGCAAGCGCAGTGGTACCCTGCCTCCGCCATACCTTCAAGAAGCTGCTGAAATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTAGCTCCACTAGTCTCTGTATCTCTTTGTaGGTAAATCTATTTGCACCA +
Preference number: 5 (lower is better)
Translates to: PCREGGGPGFPLTSSSTSLCISL*VNLFAP
Trigger: TGGTGCAAATAGATTTACCAACAAAGAGATACAGAG...ACTAGTGGAGCTAGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp AAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCCTTTGACCTCTGTCCTCAAAGTGCTTTaGGCATTCTTCTGTATTACA +
Preference number: 5 (lower is better)
Translates to: KLYAPCREGGGPGFPLTSVLKVL*AFFCIT
Trigger: TGTAATACAGAAGAATGCCAAAAGCACTTTGAGGAC...AGAGGTCAAAGGGAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp TACCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCCGTCGTGCACCAGTaGTTTCATGTAAGCAACATC +
Preference number: 5 (lower is better)
Translates to: YHFLTSCMHHAGREAVQVSVVHQ*FHVSNI
Trigger: GATGTTGCTTACATGAAACAACTGGTGCACGACGGA...AACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp AAGGCAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGTTATCCTCAACCTTGTaGGAGCCGATTTCTCTATCA +
Preference number: 5 (lower is better)
Translates to: KAGATAAGLFPSEKQSLALSSTL*EPISLS
Trigger: TGATAGAGAAATCGGCTCCAACAAGGTTGAGGATAA...CGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTGCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCGATTCGCAGCATAACTaGTTATACCCTGGTATGGAG +
Preference number: 5 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFDSQHN*LYPGME
Trigger: CTCCATACCAGGGTATAACAAGTTATGCTGCGAATC...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CCAGGCCTGCATAAAGAACTGTCCTTTGATGGGAAATTCAGGCCCCAACTGAGGGTCAGACCATCACAGTaGCTAATGGCAACAGAGGTT +
Preference number: 5 (lower is better)
Translates to: PGLHKELSFDGKFRPQLRVRPSQ*LMATEV
Trigger: AACCTCTGTTGCCATTAGCAACTGTGATGGTCTGAC...CCTCAGTTGGGGCCTGAATTTCCCATCAAAGGACAGTTCTTTATGCAGGCCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS TCA 90 bp TGCAATAGCCATCTTTGCGCTGGGAGGCAAAGGCATGAAGGTCAGTaGACTCCAGAGGTACAGATCATTCTGGGCAATCTTAGCAAAAGC +
Preference number: 5 (lower is better)
Translates to: CNSHLCAGRQRHEGQ*TPEVQIILGNLSKS
Trigger: GCTTTTGCTAAGATTGCCCAGAATGATCTGTACCTCTGGAGTTCACTGACCTTCATGCCTTTGCCTCCCAGCGCAAAGATGGCTATTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS CCA 90 bp CTCATGCCATTCCACCACAGCCCCAGGAGCTATGAAGTGAGTGTTTaGCTTCAGTCGAAGATGAAAATCTCTTCCAAATGCCGTGACGTT +
Preference number: 5 (lower is better)
Translates to: LMPFHHSPRSYEVSV*LQSKMKISSKCRDV
Trigger: AACGTCACGGCATTTGGAAGAGATTTTCATCTTCGACTGAAGCCAAACACTCACTTCATAGCTCCTGGGGCTGTGGTGGAATGGCATGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
ENSMUST00000198151.2
CDS CCA 90 bp ATCTTTTCTTGGAGTCGGGATGTTCATGCGGCAGCCAGTGGTGTTTaGTATTCTGGTAGTCAAAGTGTGAGTTACGCTGTTGGCACTGCT +
Preference number: 5 (lower is better)
Translates to: IFSWSRDVHAAASGV*YSGSQSVSYAVGTA
Trigger: AGCAGTGCCAACAGCGTAACTCACACTTTGACTACCAGAATACCAAACACCACTGGCTGCCGCATGAACATCCCGACTCCAAGAAAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp GCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATGGTATTCCCAGGCCTaGGAGCTGTCTCATGCCATT +
Preference number: 5 (lower is better)
Translates to: AAGLFPSEKQSLALSSNGWYSQA*ELSHAI
Trigger: AATGGCATGAGACAGCTCCAAGGCCTGGGAATACCA...TCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp TACCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTGTTGCCATCTTGCTTTaGCTGGTTAGCATTCTTCCA +
Preference number: 5 (lower is better)
Translates to: YHFLTSCMHHAGREAVQVVAILL*LVSILP
Trigger: TGGAAGAATGCTAACCAGCAAAAGCAAGATGGCAAC...AACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp AGTCGATGTGGAACAGGAGGAAGATGGAAGCAACTAAAAAGTGAACCAGCACTTATGAAGGTCCGTGACTaGGCTTCCTCCCCTTTGCCA +
Preference number: 5 (lower is better)
Translates to: SRCGTGGRWKQLKSEPALMKVRD*ASSPLP
Trigger: TGGCAAAGGGGAGGAAGCCAAGTCACGGACCTTCAT...AAGTGCTGGTTCACTTTTTAGTTGCTTCCATCTTCCTCCTGTTCCACATCGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 90 bp TTTCTCTATCACAGCCCACTTTCACACATTCTCCTCGCACACATATaGTGTATGGATCTTTGTAAGAGCATCGCGTTCCGTCGTGCACCA +
Preference number: 5 (lower is better)
Translates to: FLYHSPLSHILLAHI*CMDLCKSIAFRRAP
Trigger: TGGTGCACGACGGAACGCGATGCTCTTACAAAGATCCATACAGCATATGTGTGCGAGGAGAATGTGTGAAAGTGGGCTGTGATAGAGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 90 bp ATCACAGCCCACTTTCACACATTCTCCTCGCACACATATGCTGTATaGATCTTTGTAAGAGCATCGCGTTCCGTCGTGCACCAGTTGTTT +
Preference number: 5 (lower is better)
Translates to: ITAHFHTFSSHTYAV*IFVRASRSVVHQLF
Trigger: AAACAACTGGTGCACGACGGAACGCGATGCTCTTACAAAGATCCATACAGCATATGTGTGCGAGGAGAATGTGTGAAAGTGGGCTGTGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp AGTCGATGTGGAACAGGAGGAAGATGGAAGCAACTAAAAAGTGAACCAGCACTTGGAAGTTCTGGGAGTTaGGGCCAGTCGTGTTCAAAG +
Preference number: 5 (lower is better)
Translates to: SRCGTGGRWKQLKSEPALGSSGS*GQSCSK
Trigger: CTTTGAACACGACTGGCCCAAACTCCCAGAACTTCC...AAGTGCTGGTTCACTTTTTAGTTGCTTCCATCTTCCTCCTGTTCCACATCGACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CCACTTTTTAACAAGCTGTATGCACCATGCAGGGAGGGAGGCGGTCCAGGTTTCGTCCTCAAAGTGCTTTaGGCATTCTTCTGTATTACA +
Preference number: 5 (lower is better)
Translates to: PLFNKLYAPCREGGGPGFVLKVL*AFFCIT
Trigger: TGTAATACAGAAGAATGCCAAAAGCACTTTGAGGAC...GAAACCTGGACCGCCTCCCTCCCTGCATGGTGCATACAGCTTGTTAAAAAGTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp GCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTCACTTATCCTCAACCTaGTTGGAGCCGATTTCTCTA +
Preference number: 5 (lower is better)
Translates to: ATAAGLFPSEKQSLALSSHLSST*LEPISL
Trigger: TAGAGAAATCGGCTCCAACAAGGTTGAGGATAAGTG...AGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS TCA 90 bp GTGGTAGACGTCTTCAGATACATCTCTGGGAGGCTGCTCCACTGCTaGTCTCTTGTAGACAACGTGAATCCTTCCATTTTCTTCATCCAT +
Preference number: 5 (lower is better)
Translates to: VVDVFRYISGRLLHC*SLVDNVNPSIFFIH
Trigger: ATGGATGAAGAAAATGGAAGGATTCACGTTGTCTACAAGAGATCAGCAGTGGAGCAGCCTCCCAGAGATGTATCTGAAGACGTCTACCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS TCA 90 bp TCTGGTAGTCAAAGTGTGAGTTACGCTGTTGGCACTGCTGGGCCCTaGAGTCCTCAAAGTGCTTTTGGCATTCTTCTGTATTACAAAGCT +
Preference number: 5 (lower is better)
Translates to: SGSQSVSYAVGTAGP*SPQSAFGILLYYKA
Trigger: AGCTTTGTAATACAGAAGAATGCCAAAAGCACTTTGAGGACTTCAGGGCCCAGCAGTGCCAACAGCGTAACTCACACTTTGACTACCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 90 bp TCTGTATTACAAAGCTGGTACTCAAAATTAACACCAGGGCAGTCCTaGCCACCATTGATGGGCGTGGGATTATTGCATTGGCGTGTTCTA +
Preference number: 5 (lower is better)
Translates to: SVLQSWYSKLTPGQS*PPLMGVGLLHWRVL
Trigger: TAGAACACGCCAATGCAATAATCCCACGCCCATCAATGGTGGGCAGGACTGCCCTGGTGTTAATTTTGAGTACCAGCTTTGTAATACAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 90 bp TTCAAAAGTCAGACCATCACAGTTGCTAATGGCAACAGAGGTTCCTaGAATGTCCATGATGTCACCAACATAGGCACAGCTGGTCTGCAA +
Preference number: 5 (lower is better)
Translates to: FKSQTITVANGNRGS*NVHDVTNIGTAGLQ
Trigger: TTGCAGACCAGCTGTGCCTATGTTGGTGACATCATGGACATTCCAGGAACCTCTGTTGCCATTAGCAACTGTGATGGTCTGACTTTTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR CAA 90 bp CAGGGGCCACTGCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTCTGTATCTCTTTGTaGGTAAATCTATTTGCACCA +
Preference number: 5 (lower is better)
Translates to: QGPLQLGSFLLKNSLWRFLCISL*VNLFAP
Trigger: TGGTGCAAATAGATTTACCAACAAAGAGATACAGAG...AAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGCAGTGGCCCCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp TTTCTTCTAATGGATTCTGGTAAACAAGTCGATGTGGAACAGGAGGAAGATGGAGAACAGGAGCCAAATTaGGTCCACGACCCCCAGTTG +
Preference number: 5 (lower is better)
Translates to: FLLMDSGKQVDVEQEEDGEQEPN*VHDPQL
Trigger: CAACTGGGGGTCGTGGACCAAATTTGGCTCCTGTTC...TCCATCTTCCTCCTGTTCCACATCGACTTGTTTACCAGAATCCATTAGAAGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp GCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGAGGTTTTGGCTTTTTATaGACCTCGCAGAAACTGCGG +
Preference number: 5 (lower is better)
Translates to: AAGLFPSEKQSLALSSNGGFGFL*TSQKLR
Trigger: CCGCAGTTTCTGCGAGGTCAATAAAAAGCCAAAACC...TCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp GCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGAGTATGGAGCAGTATCTaGCTAGCACCTCCATTTGAC +
Preference number: 5 (lower is better)
Translates to: AAGLFPSEKQSLALSSNGVWSSI*LAPPFD
Trigger: GTCAAATGGAGGTGCTAGCAAGATACTGCTCCATAC...TCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp GCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGAGTTGCCATCTTGCTTTaGCTGGTTAGCATTCTTCCA +
Preference number: 5 (lower is better)
Translates to: AAGLFPSEKQSLALSSNGVAILL*LVSILP
Trigger: TGGAAGAATGCTAACCAGCAAAAGCAAGATGGCAAC...TCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp GCAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGACGTGGGATTATTGCATaGGCGTGTTCTAAAACGAAC +
Preference number: 5 (lower is better)
Translates to: AAGLFPSEKQSLALSSNGRGIIA*ACSKTN
Trigger: GTTCGTTTTAGAACACGCCAATGCAATAATCCCACG...TCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp TTTCTTCTAATGGATTCTGGTAAACAAGTCGATGTGGAACAGGAGGAAGATGGAGATTTCAGCAGCTTCTaGAAGGTATGGCGGAGGCAG +
Preference number: 5 (lower is better)
Translates to: FLLMDSGKQVDVEQEEDGDFSSF*KVWRRQ
Trigger: CTGCCTCCGCCATACCTTCAAGAAGCTGCTGAAATC...TCCATCTTCCTCCTGTTCCACATCGACTTGTTTACCAGAATCCATTAGAAGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CATATGTCAAAAGAGCTACAGACAGACGCTTCTGGAGAATATGGAGGGAGAACTAGGAAGTCCAAGGGCTaGAGTCCTCTTCAAAAGTCA +
Preference number: 5 (lower is better)
Translates to: HMSKELQTDASGEYGGRTRKSKG*SPLQKS
Trigger: TGACTTTTGAAGAGGACTCAAGCCCTTGGACTTCCT...AGTTCTCCCTCCATATTCTCCAGAAGCGTCTGTCTGTAGCTCTTTTGACATATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS CCA 90 bp CTGAAGTCCTCAAAGTGCTTTTGGCATTCTTCTGTATTACAAAGCTaGTACTCAAAATTAACACCAGGGCAGTCCTGCCCACCATTGATG +
Preference number: 5 (lower is better)
Translates to: LKSSKCFWHSSVLQS*YSKLTPGQSCPPLM
Trigger: CATCAATGGTGGGCAGGACTGCCCTGGTGTTAATTTTGAGTACCAGCTTTGTAATACAGAAGAATGCCAAAAGCACTTTGAGGACTTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 90 bp TGCGCTTGCTACATGATTCGCAGCATAACTTGTTATACCCTGGTATaGAGCAGTATCTTGCTAGCACCTCCATTTGACAGAATATGGACT +
Preference number: 5 (lower is better)
Translates to: CACYMIRSITCYTLV*SSILLAPPFDRIWT
Trigger: AGTCCATATTCTGTCAAATGGAGGTGCTAGCAAGATACTGCTCCATACCAGGGTATAACAAGTTATGCTGCGAATCATGTAGCAAGCGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATCGTGGGATTATTGCATaGGCGTGTTCTAAAACGAAC +
Preference number: 5 (lower is better)
Translates to: QLGSFLLKNSLWRFLLMDRGIIA*ACSKTN
Trigger: GTTCGTTTTAGAACACGCCAATGCAATAATCCCACG...ATCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp AGTCGATGTGGAACAGGAGGAAGATGGAAGCAACTAAAAAGTGAACCAGCACTTCACTTATCCTCAACCTaGTTGGAGCCGATTTCTCTA +
Preference number: 5 (lower is better)
Translates to: SRCGTGGRWKQLKSEPALHLSST*LEPISL
Trigger: TAGAGAAATCGGCTCCAACAAGGTTGAGGATAAGTG...AAGTGCTGGTTCACTTTTTAGTTGCTTCCATCTTCCTCCTGTTCCACATCGACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp CAGCTGGGCTCTTTCCTTCTGAAAAACAGTCTTTGGCGCTTTCTTCTAATGGATGTAGTGACCTGTGGCTaGATTCTTAATGGCAAGAAC +
Preference number: 5 (lower is better)
Translates to: QLGSFLLKNSLWRFLLMDVVTCG*ILNGKN
Trigger: GTTCTTGCCATTAAGAATCAAGCCACAGGTCACTAC...ATCCATTAGAAGAAAGCGCCAAAGACTGTTTTTCAGAAGGAAAGAGCCCAGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061427.10
CDS TCA 90 bp CAATGTCATCTTCAATGTTGTAATCCCACTCCACACCAAGATCTATaGAGGTCCGTGACTTGGCTTCCTCCCCTTTGCCATTTAAAATGT +
Preference number: 5 (lower is better)
Translates to: QCHLQCCNPTPHQDL*RSVTWLPPLCHLKC
Trigger: ACATTTTAAATGGCAAAGGGGAGGAAGCCAAGTCACGGACCTTCATAGATCTTGGTGTGGAGTGGGATTACAACATTGAAGATGACATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 90 bp GTCACCAGCTCATACTCTCTGTATCTCTTTGTTGGTAAATCTATTTaGACCATTTCGTCAGTACCAGCTTGTCCATCAGCTGATGTCCTA +
Preference number: 5 (lower is better)
Translates to: VTSSYSLYLFVGKSI*TISSVPACPSADVL
Trigger: TAGGACATCAGCTGATGGACAAGCTGGTACTGACGAAATGGTGCAAATAGATTTACCAACAAAGAGATACAGAGAGTATGAGCTGGTGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
ENSMUST00000198151.2
CDS-3UTR CAA 90 bp GGTTCAAAACCTACAGGTTTCCCATCATATTTCACAAAGAGAAGTTTTATCACCTGGTATTCCCAGGCCTaGGAGCTGTCTCATGCCATT +
Preference number: 5 (lower is better)
Translates to: GSKPTGFPSYFTKRSFITWYSQA*ELSHAI
Trigger: AATGGCATGAGACAGCTCCAAGGCCTGGGAATACCA...GGTGATAAAACTTCTCTTTGTGAAATATGATGGGAAACCTGTAGGTTTTGAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS-3UTR CAA 90 bp TTTCTTCTAATGGATTCTGGTAAACAAGTCGATGTGGAACAGGAGGAAGATGGAGGTTTTGGCTTTTTATaGACCTCGCAGAAACTGCGG +
Preference number: 5 (lower is better)
Translates to: FLLMDSGKQVDVEQEEDGGFGFL*TSQKLR
Trigger: CCGCAGTTTCTGCGAGGTCAATAAAAAGCCAAAACC...TCCATCTTCCTCCTGTTCCACATCGACTTGTTTACCAGAATCCATTAGAAGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp TTTCTTCTAATGGATTCTGGTAAACAAGTCGATGTGGAACAGGAGGAAGATGGAGTATGGAGCAGTATCTaGCTAGCACCTCCATTTGAC +
Preference number: 5 (lower is better)
Translates to: FLLMDSGKQVDVEQEEDGVWSSI*LAPPFD
Trigger: GTCAAATGGAGGTGCTAGCAAGATACTGCTCCATAC...TCCATCTTCCTCCTGTTCCACATCGACTTGTTTACCAGAATCCATTAGAAGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS-3UTR CAA 90 bp GAGAAGTTTTATCACCCAGTATATCTCTCAGATATAAATCCAGTCTCCATCTTTCTCTGTATCTCTTTGTaGGTAAATCTATTTGCACCA +
Preference number: 5 (lower is better)
Translates to: EKFYHPVYLSDINPVSIFLCISL*VNLFAP
Trigger: TGGTGCAAATAGATTTACCAACAAAGAGATACAGAG...AAAGATGGAGACTGGATTTATATCTGAGAGATATACTGGGTGATAAAACTTCTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS GCA 72 bp TGGTGCCATCCTGCAGTGGCTGGAGGCAGCGCACGGTaGGCAGCTGGTTCCCGGAGCTGCCACAGCTTCTGC +
Preference number: 6 (lower is better)
Translates to: WCHPAVAGGSAR*AAGSRSCHSFC
Trigger: GCAGAAGCTGTGGCAGCTCCGGGAACCAGCTGCGCACCGTGCGCTGCCTCCAGCCACTGCAGGATGGCACCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 72 bp TCCTGCAGTGGCTGGAGGCAGCGCACGGTGCGCAGCTaGTTCCCGGAGCTGCCACAGCTTCTGCTACAGTGC +
Preference number: 6 (lower is better)
Translates to: SCSGWRQRTVRS*FPELPQLLLQC
Trigger: GCACTGTAGCAGAAGCTGTGGCAGCTCCGGGAACCAGCTGCGCACCGTGCGCTGCCTCCAGCCACTGCAGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 72 bp CGGTGCGCAGCTGGTTCCCGGAGCTGCCACAGCTTCTaGTACAGTGCTCCCATTCATCCGCTGCCCAGACCG +
Preference number: 6 (lower is better)
Translates to: RCAAGSRSCHSF*YSAPIHPLPRP
Trigger: CGGTCTGGGCAGCGGATGAATGGGAGCACTGTAGCAGAAGCTGTGGCAGCTCCGGGAACCAGCTGCGCACCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 72 bp GGAGGCAGCGCACGGTGCGCAGCTGGTTCCCGGAGCTaGCACAGCTTCTGCTACAGTGCTCCCATTCATCCG +
Preference number: 6 (lower is better)
Translates to: GGSARCAAGSRS*HSFCYSAPIHP
Trigger: CGGATGAATGGGAGCACTGTAGCAGAAGCTGTGGCAGCTCCGGGAACCAGCTGCGCACCGTGCGCTGCCTCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 72 bp CGGCTCTCAGGACGGTCTCCCAGGCAGTACTTGCTGTaGACCGAGCGGTTGGTGCCATCCTGCAGTGGCTGG +
Preference number: 6 (lower is better)
Translates to: RLSGRSPRQYLL*TERLVPSCSGW
Trigger: CCAGCCACTGCAGGATGGCACCAACCGCTCGGTGCACAGCAAGTACTGCCTGGGAGACCGTCCTGAGAGCCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 72 bp AGCTGGTTCCCGGAGCTGCCACAGCTTCTGCTACAGTaGTCCCATTCATCCGCTGCCCAGACCGGGTGTGTG +
Preference number: 6 (lower is better)
Translates to: SWFPELPQLLLQ*SHSSAAQTGCV
Trigger: CACACACCCGGTCTGGGCAGCGGATGAATGGGAGCACTGTAGCAGAAGCTGTGGCAGCTCCGGGAACCAGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS TCA 72 bp GAGGGGGCAGCAGCCACAGGGGAGGCGGGACGAAGGTaGTCAGTCTTTATGGATGAGGAGGATGGCACTGAC +
Preference number: 6 (lower is better)
Translates to: EGAAATGEAGRR*SVFMDEEDGTD
Trigger: GTCAGTGCCATCCTCCTCATCCATAAAGACTGATCACCTTCGTCCCGCCTCCCCTGTGGCTGCTGCCCCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 72 bp GCAGTCTCATCGCCACACCGATTGCCTTGCCCGTCATaGTCCATGCCCAACACATGGCCAGTTTCATGGGCT +
Preference number: 6 (lower is better)
Translates to: AVSSPHRLPCPS*SMPNTWPVSWA
Trigger: AGCCCATGAAACTGGCCATGTGTTGGGCATGGAGCATGACGGGCAAGGCAATCGGTGTGGCGATGAGACTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 72 bp GCACCTCGATGTTGTAATCGTTCTCTCCCGTGTGTCTaGGGCGCCGCATTGTCTTGTTCAGCTGCTGGCCAA +
Preference number: 6 (lower is better)
Translates to: APRCCNRSLPCV*GAALSCSAAGQ
Trigger: TTGGCCAGCAGCTGAACAAGACAATGCGGCGCCGCAGACACACGGGAGAGAACGATTACAACATCGAGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 72 bp ACTCGGGCTTTTCTCCATCACAGTGGTCTCCAGTCCTaGACAGAACCTGTCTCACCTCTGTTCCCTCACCGC +
Preference number: 6 (lower is better)
Translates to: TRAFLHHSGLQS*TEPVSPLFPHR
Trigger: GCGGTGAGGGAACAGAGGTGAGACAGGTTCTGTGCAGGACTGGAGACCACTGTGATGGAGAAAAGCCCGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 72 bp GCCCACTCGAAGGTATCCAGCTCCTCCTGGATGACGTaGTTGCTGTTGATCGTTGGCACCGAGTCTTCGTGG +
Preference number: 6 (lower is better)
Translates to: AHSKVSSSSWMT*LLLIVGTESSW
Trigger: CCACGAAGACTCGGTGCCAACGATCAACAGCAACAACGTCATCCAGGAGGAGCTGGATACCTTCGAGTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS TCA 72 bp ATGGCTCATCATTACAGGGAGGCAGCTGGCAGGGTCTaGCAGACTCGGGCTTTTCTCCATCACAGTGGTCTC +
Preference number: 6 (lower is better)
Translates to: MAHHYREAAGRV*QTRAFLHHSGL
Trigger: GAGACCACTGTGATGGAGAAAAGCCCGAGTCTGTCAGACCCTGCCAGCTGCCTCCCTGTAATGATGAGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS TCA 72 bp GAGGATGGCACTGACTCCAGAGTCTTTCTTCCAGCCTaGTGTGCTCTCTTCCGGGGGAAGTCAGCACTAGCT +
Preference number: 6 (lower is better)
Translates to: EDGTDSRVFLPA*CALFRGKSALA
Trigger: AGCTAGTGCTGACTTCCCCCGGAAGAGAGCACATCAGGCTGGAAGAAAGACTCTGGAGTCAGTGCCATCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 72 bp CCACAGGGGAGGCGGGACGAAGGTGATCAGTCTTTATaGATGAGGAGGATGGCACTGACTCCAGAGTCTTTC +
Preference number: 6 (lower is better)
Translates to: PQGRRDEGDQSL*MRRMALTPESF
Trigger: GAAAGACTCTGGAGTCAGTGCCATCCTCCTCATCCATAAAGACTGATCACCTTCGTCCCGCCTCCCCTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 72 bp TCACCCAAACATGGCTCATCATTACAGGGAGGCAGCTaGCAGGGTCTGACAGACTCGGGCTTTTCTCCATCA +
Preference number: 6 (lower is better)
Translates to: SPKHGSSLQGGS*QGLTDSGFSPS
Trigger: TGATGGAGAAAAGCCCGAGTCTGTCAGACCCTGCCAGCTGCCTCCCTGTAATGATGAGCCATGTTTGGGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 72 bp GGGCAGTCCTGCCCACCATTGATGGGCGTGGGATTATaGCATTGGCGTGTTCTAAAACGAACACCGGTTCCA +
Preference number: 6 (lower is better)
Translates to: GQSCPPLMGVGL*HWRVLKRTPVP
Trigger: TGGAACCGGTGTTCGTTTTAGAACACGCCAATGCAATAATCCCACGCCCATCAATGGTGGGCAGGACTGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 72 bp CACTCGAAGGTATCCAGCTCCTCCTGGATGACGTTGTaGCTGTTGATCGTTGGCACCGAGTCTTCGTGGATG +
Preference number: 6 (lower is better)
Translates to: HSKVSSSSWMTL*LLIVGTESSWM
Trigger: CATCCACGAAGACTCGGTGCCAACGATCAACAGCAACAACGTCATCCAGGAGGAGCTGGATACCTTCGAGTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS TCA 72 bp CCAAAGATAGCATCACTGTGGATTTCAGCAGCTTCTTaGAGGTATGGCGGAGGCAGGGTACCACTGCGCTTG +
Preference number: 6 (lower is better)
Translates to: PKIASLWISAAS*RYGGGRVPLRL
Trigger: CAAGCGCAGTGGTACCCTGCCTCCGCCATACCTTCAAGAAGCTGCTGAAATCCACAGTGATGCTATCTTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 72 bp GGCGCCGCATTGTCTTGTTCAGCTGCTGGCCAATGTTaGTGTAAACTGTACCTAGATCGTCAAGGCCTTCCA +
Preference number: 6 (lower is better)
Translates to: GAALSCSAAGQC*CKLYLDRQGLP
Trigger: TGGAAGGCCTTGACGATCTAGGTACAGTTTACAGCAACATTGGCCAGCAGCTGAACAAGACAATGCGGCGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 72 bp TTCCTTCTGAAGCACTTCCGTGTAGATGGCTGTTTCTaGGGTCAGTGGTATTCCCAGGCCTTGGAGCTGTCT +
Preference number: 6 (lower is better)
Translates to: FLLKHFRVDGCF*GQWYSQALELS
Trigger: AGACAGCTCCAAGGCCTGGGAATACCACTGACCCCAGAAACAGCCATCTACACGGAAGTGCTTCAGAAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
ENSMUST00000198151.2
CDS CCA 72 bp GATCTCCAGCTTCCTTCTGAAGCACTTCCGTGTAGATaGCTGTTTCTGGGGTCAGTGGTATTCCCAGGCCTT +
Preference number: 6 (lower is better)
Translates to: DLQLPSEALPCR*LFLGSVVFPGL
Trigger: AAGGCCTGGGAATACCACTGACCCCAGAAACAGCCATCTACACGGAAGTGCTTCAGAAGGAAGCTGGAGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
ENSMUST00000198151.2
CDS CCA 72 bp ACGTTGTTGCTGTTGATCGTTGGCACCGAGTCTTCGTaGATGATGTACTTATACGTCAGGCTGGAGCGCGTG +
Preference number: 6 (lower is better)
Translates to: TLLLLIVGTESS*MMYLYVRLERV
Trigger: CACGCGCTCCAGCCTGACGTATAAGTACATCATCCACGAAGACTCGGTGCCAACGATCAACAGCAACAACGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 72 bp TGTAATCGTTCTCTCCCGTGTGTCTGCGGCGCCGCATaGTCTTGTTCAGCTGCTGGCCAATGTTGCTGTAAA +
Preference number: 6 (lower is better)
Translates to: CNRSLPCVCGAA*SCSAAGQCCCK
Trigger: TTTACAGCAACATTGGCCAGCAGCTGAACAAGACAATGCGGCGCCGCAGACACACGGGAGAGAACGATTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 72 bp ACACCGGTTCCACATGTCCTAGAACAGGAGCCAAATTaGGTCCACGACCCCCAGTTGCCATCTTGCTTTTGC +
Preference number: 6 (lower is better)
Translates to: TPVPHVLEQEPN*VHDPQLPSCFC
Trigger: GCAAAAGCAAGATGGCAACTGGGGGTCGTGGACCAAATTTGGCTCCTGTTCTAGGACATGTGGAACCGGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 90 bp CCTCGATGTTGTAATCGTTCTCTCCCGTGTGTCTGCGGCGCCGCATaGTCTTGTTCAGCTGCTGGCCAATGTTGCTGTAAACTGTACCTA +
Preference number: 6 (lower is better)
Translates to: PRCCNRSLPCVCGAA*SCSAAGQCCCKLYL
Trigger: TAGGTACAGTTTACAGCAACATTGGCCAGCAGCTGAACAAGACAATGCGGCGCCGCAGACACACGGGAGAGAACGATTACAACATCGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 90 bp CTGGGTGTCCTGGTAAATGTCCCTTTCACAGTTCGACAGTGGGAATaGTCCCCTCCACAGACCCCACACTTATCCTCAACCTTGTTGGAG +
Preference number: 6 (lower is better)
Translates to: LGVLVNVPFTVRQWE*SPPQTPHLSSTLLE
Trigger: CTCCAACAAGGTTGAGGATAAGTGTGGGGTCTGTGGAGGGGACAATTCCCACTGTCGAACTGTGAAAGGGACATTTACCAGGACACCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 90 bp GCCCACTCGAAGGTATCCAGCTCCTCCTGGATGACGTTGTTGCTGTaGATCGTTGGCACCGAGTCTTCGTGGATGATGTACTTATACGTC +
Preference number: 6 (lower is better)
Translates to: AHSKVSSSSWMTLLL*IVGTESSWMMYLYV
Trigger: GACGTATAAGTACATCATCCACGAAGACTCGGTGCCAACGATCAACAGCAACAACGTCATCCAGGAGGAGCTGGATACCTTCGAGTGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 90 bp AAGTCAGCACTAGCTCTGCTGCTGGCTCTGAAGGCAGCATCCGCATaGGGGTTTGCCATGGAAGAGAAGCTACTCAAGGATTTCTTCTCA +
Preference number: 6 (lower is better)
Translates to: KSALALLLALKAASA*GFAMEEKLLKDFFS
Trigger: TGAGAAGAAATCCTTGAGTAGCTTCTCTTCCATGGCAAACCCCAATGCGGATGCTGCCTTCAGAGCCAGCAGCAGAGCTAGTGCTGACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 72 bp CTTGAAGGTATGGCGGAGGCAGGGTACCACTGCGCTTaGTACATGATTCGCAGCATAACTTGTTATACCCTG +
Preference number: 6 (lower is better)
Translates to: LEGMAEAGYHCA*YMIRSITCYTL
Trigger: CAGGGTATAACAAGTTATGCTGCGAATCATGTAGCAAGCGCAGTGGTACCCTGCCTCCGCCATACCTTCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 72 bp TCCTGCCCACCATTGATGGGCGTGGGATTATTGCATTaGCGTGTTCTAAAACGAACACCGGTTCCACATGTC +
Preference number: 6 (lower is better)
Translates to: SCPPLMGVGLLH*RVLKRTPVPHV
Trigger: GACATGTGGAACCGGTGTTCGTTTTAGAACACGCCAATGCAATAATCCCACGCCCATCAATGGTGGGCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 72 bp GGAGCCAAATTTGGTCCACGACCCCCAGTTGCCATCTaGCTTTTGCTGGTTAGCATTCTTCCACATGCAGTG +
Preference number: 6 (lower is better)
Translates to: GAKFGPRPPVAI*LLLVSILPHAV
Trigger: CACTGCATGTGGAAGAATGCTAACCAGCAAAAGCAAGATGGCAACTGGGGGTCGTGGACCAAATTTGGCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 72 bp GTCCTGCCCACCATTGATGGGCGTGGGATTATTGCATaGGCGTGTTCTAAAACGAACACCGGTTCCACATGT +
Preference number: 6 (lower is better)
Translates to: VLPTIDGRGIIA*ACSKTNTGSTC
Trigger: ACATGTGGAACCGGTGTTCGTTTTAGAACACGCCAATGCAATAATCCCACGCCCATCAATGGTGGGCAGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 72 bp CTGGTAAATGTCCCTTTCACAGTTCGACAGTGGGAATaGTCCCCTCCACAGACCCCACACTTATCCTCAACC +
Preference number: 6 (lower is better)
Translates to: LVNVPFTVRQWE*SPPQTPHLSST
Trigger: GGTTGAGGATAAGTGTGGGGTCTGTGGAGGGGACAATTCCCACTGTCGAACTGTGAAAGGGACATTTACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 72 bp AAGGTATCCAGCTCCTCCTGGATGACGTTGTTGCTGTaGATCGTTGGCACCGAGTCTTCGTGGATGATGTAC +
Preference number: 6 (lower is better)
Translates to: KVSSSSWMTLLL*IVGTESSWMMY
Trigger: GTACATCATCCACGAAGACTCGGTGCCAACGATCAACAGCAACAACGTCATCCAGGAGGAGCTGGATACCTT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 90 bp CCACATGTCCTAGAACAGGAGCCAAATTTGGTCCACGACCCCCAGTaGCCATCTTGCTTTTGCTGGTTAGCATTCTTCCACATGCAGTGT +
Preference number: 6 (lower is better)
Translates to: PHVLEQEPNLVHDPQ*PSCFCWLAFFHMQC
Trigger: ACACTGCATGTGGAAGAATGCTAACCAGCAAAAGCAAGATGGCAACTGGGGGTCGTGGACCAAATTTGGCTCCTGTTCTAGGACATGTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 90 bp GGAGGCAGGGTACCACTGCGCTTGCTACATGATTCGCAGCATAACTaGTTATACCCTGGTATGGAGCAGTATCTTGCTAGCACCTCCATT +
Preference number: 6 (lower is better)
Translates to: GGRVPLRLLHDSQHN*LYPGMEQYLASTSI
Trigger: AATGGAGGTGCTAGCAAGATACTGCTCCATACCAGGGTATAACAAGTTATGCTGCGAATCATGTAGCAAGCGCAGTGGTACCCTGCCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS TCA 72 bp AGCAAAAGCCACTGTCAGCCAGGAAGTCCAAGGGCTTaGGTCCTCTTCAAAAGTCAGACCATCACAGTTGCT +
Preference number: 6 (lower is better)
Translates to: SKSHCQPGSPRA*VLFKSQTITVA
Trigger: AGCAACTGTGATGGTCTGACTTTTGAAGAGGACTCAAGCCCTTGGACTTCCTGGCTGACAGTGGCTTTTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS TCA 72 bp CATCTTTGCGCTGGGAGGCAAAGGCATGAAGGTCAGTaGACTCCAGAGGTACAGATCATTCTGGGCAATCTT +
Preference number: 6 (lower is better)
Translates to: HLCAGRQRHEGQ*TPEVQIILGNL
Trigger: AAGATTGCCCAGAATGATCTGTACCTCTGGAGTTCACTGACCTTCATGCCTTTGCCTCCCAGCGCAAAGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS GCA 72 bp GAGCCAAATTTGGTCCACGACCCCCAGTTGCCATCTTaGTTTTGCTGGTTAGCATTCTTCCACATGCAGTGT +
Preference number: 6 (lower is better)
Translates to: EPNLVHDPQLPS*FCWLAFFHMQC
Trigger: ACACTGCATGTGGAAGAATGCTAACCAGCAAAAGCAAGATGGCAACTGGGGGTCGTGGACCAAATTTGGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 72 bp CAAAGCTGGTACTCAAAATTAACACCAGGGCAGTCCTaGCCACCATTGATGGGCGTGGGATTATTGCATTGG +
Preference number: 6 (lower is better)
Translates to: QSWYSKLTPGQS*PPLMGVGLLHW
Trigger: CCAATGCAATAATCCCACGCCCATCAATGGTGGGCAGGACTGCCCTGGTGTTAATTTTGAGTACCAGCTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 72 bp CGCTGTTGGCACTGCTGGGCCCTGAAGTCCTCAAAGTaGTTTTGGCATTCTTCTGTATTACAAAGCTGGTAC +
Preference number: 6 (lower is better)
Translates to: RCWHCWALKSSK*FWHSSVLQSWY
Trigger: GTACCAGCTTTGTAATACAGAAGAATGCCAAAAGCACTTTGAGGACTTCAGGGCCCAGCAGTGCCAACAGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 72 bp CAGCTTCTTGAAGGTATGGCGGAGGCAGGGTACCACTaGGCTTGCTACATGATTCGCAGCATAACTTGTTAT +
Preference number: 6 (lower is better)
Translates to: QLLEGMAEAGYH*ACYMIRSITCY
Trigger: ATAACAAGTTATGCTGCGAATCATGTAGCAAGCGCAGTGGTACCCTGCCTCCGCCATACCTTCAAGAAGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 72 bp TTAAGAAAATTGCGTGATCATGGTGTTCGGCGTGGTTaGGATCAGTTTTCTGTTGCTGGCAAGCCCATCGGC +
Preference number: 6 (lower is better)
Translates to: LRKLRDHGVRRG*DQFSVAGKPIG
Trigger: GCCGATGGGCTTGCCAGCAACAGAAAACTGATCCCAACCACGCCGAACACCATGATCACGCAATTTTCTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 72 bp CAGCTCCTCCTGGATGACGTTGTTGCTGTTGATCGTTaGCACCGAGTCTTCGTGGATGATGTACTTATACGT +
Preference number: 6 (lower is better)
Translates to: QLLLDDVVAVDR*HRVFVDDVLIR
Trigger: ACGTATAAGTACATCATCCACGAAGACTCGGTGCCAACGATCAACAGCAACAACGTCATCCAGGAGGAGCTG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 72 bp CTCCATTTGACAGAATATGGACTTGTCACCCAAACATaGCTCATCATTACAGGGAGGCAGCTGGCAGGGTCT +
Preference number: 6 (lower is better)
Translates to: LHLTEYGLVTQT*LIITGRQLAGS
Trigger: AGACCCTGCCAGCTGCCTCCCTGTAATGATGAGCCATGTTTGGGTGACAAGTCCATATTCTGTCAAATGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 72 bp CTAGAACAGGAGCCAAATTTGGTCCACGACCCCCAGTaGCCATCTTGCTTTTGCTGGTTAGCATTCTTCCAC +
Preference number: 6 (lower is better)
Translates to: LEQEPNLVHDPQ*PSCFCWLAFFH
Trigger: GTGGAAGAATGCTAACCAGCAAAAGCAAGATGGCAACTGGGGGTCGTGGACCAAATTTGGCTCCTGTTCTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS TCA 72 bp TTGCACCATTTCGTCAGTACCAGCTTGTCCATCAGCTaGTGTCCTAACCTCTACCAGAGAGGCTGCTATCAA +
Preference number: 6 (lower is better)
Translates to: LHHFVSTSLSIS*CPNLYQRGCYQ
Trigger: TTGATAGCAGCCTCTCTGGTAGAGGTTAGGACATCAGCTGATGGACAAGCTGGTACTGACGAAATGGTGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
ENSMUST00000198151.2
CDS GCA 72 bp CATAGGAATGGATGTATCGTTTCAGTTCCTGACCGCTaGATCTGGACCAGTGATAACGATGGAAGGCAGCTT +
Preference number: 6 (lower is better)
Translates to: HRNGCIVSVPDR*IWTSDNDGRQL
Trigger: AAGCTGCCTTCCATCGTTATCACTGGTCCAGATGCAGCGGTCAGGAACTGAAACGATACATCCATTCCTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 72 bp AATGGATGTATCGTTTCAGTTCCTGACCGCTGCATCTaGACCAGTGATAACGATGGAAGGCAGCTTGCACTA +
Preference number: 6 (lower is better)
Translates to: NGCIVSVPDRCI*TSDNDGRQLAL
Trigger: TAGTGCAAGCTGCCTTCCATCGTTATCACTGGTCCAGATGCAGCGGTCAGGAACTGAAACGATACATCCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 72 bp CACTTTCACACATTCTCCTCGCACACATATGCTGTATaGATCTTTGTAAGAGCATCGCGTTCCGTCGTGCAC +
Preference number: 6 (lower is better)
Translates to: HFHTFSSHTYAV*IFVRASRSVVH
Trigger: GTGCACGACGGAACGCGATGCTCTTACAAAGATCCATACAGCATATGTGTGCGAGGAGAATGTGTGAAAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 72 bp TACTCAAAATTAACACCAGGGCAGTCCTGCCCACCATaGATGGGCGTGGGATTATTGCATTGGCGTGTTCTA +
Preference number: 6 (lower is better)
Translates to: YSKLTPGQSCPP*MGVGLLHWRVL
Trigger: TAGAACACGCCAATGCAATAATCCCACGCCCATCAATGGTGGGCAGGACTGCCCTGGTGTTAATTTTGAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 72 bp GGGCTTGAGTCCTCTTCAAAAGTCAGACCATCACAGTaGCTAATGGCAACAGAGGTTCCTGGAATGTCCATG +
Preference number: 6 (lower is better)
Translates to: GLESSSKVRPSQ*LMATEVPGMSM
Trigger: CATGGACATTCCAGGAACCTCTGTTGCCATTAGCAACTGTGATGGTCTGACTTTTGAAGAGGACTCAAGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS CAA 90 bp CCTAGAACAGGAGCCAAATTTGGTCCACGACCCCCAGTTGCCATCTaGCTTTTGCTGGTTAGCATTCTTCCACATGCAGTGTCCTTTATA +
Preference number: 6 (lower is better)
Translates to: PRTGAKFGPRPPVAI*LLLVSILPHAVSFI
Trigger: TATAAAGGACACTGCATGTGGAAGAATGCTAACCAGCAAAAGCAAGATGGCAACTGGGGGTCGTGGACCAAATTTGGCTCCTGTTCTAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 90 bp GCTGTATGGATCTTTGTAAGAGCATCGCGTTCCGTCGTGCACCAGTaGTTTCATGTAAGCAACATCCCCAGTCTCTTTGGACTGACAGTA +
Preference number: 6 (lower is better)
Translates to: AVWIFVRASRSVVHQ*FHVSNIPSLFGLTV
Trigger: TACTGTCAGTCCAAAGAGACTGGGGATGTTGCTTACATGAAACAACTGGTGCACGACGGAACGCGATGCTCTTACAAAGATCCATACAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 90 bp GAAGTCCAAGGGCTTGAGTCCTCTTCAAAAGTCAGACCATCACAGTaGCTAATGGCAACAGAGGTTCCTGGAATGTCCATGATGTCACCA +
Preference number: 6 (lower is better)
Translates to: EVQGLESSSKVRPSQ*LMATEVPGMSMMSP
Trigger: TGGTGACATCATGGACATTCCAGGAACCTCTGTTGCCATTAGCAACTGTGATGGTCTGACTTTTGAAGAGGACTCAAGCCCTTGGACTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS CAA 90 bp TACTCTTCATCATCGCTCTTTATCATCCCAGCCAGACCATCACAGTaGCTAATGGCAACAGAGGTTCCTGGAATGTCCATGATGTCACCA +
Preference number: 6 (lower is better)
Translates to: YSSSSLFIIPARPSQ*LMATEVPGMSMMSP
Trigger: TGGTGACATCATGGACATTCCAGGAACCTCTGTTGCCATTAGCAACTGTGATGGTCTGGCTGGGATGATAAAGAGCGATGATGAAGAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS TCA 72 bp GTCTTCAGATACATCTCTGGGAGGCTGCTCCACTGCTaGTCTCTTGTAGACAACGTGAATCCTTCCATTTTC +
Preference number: 6 (lower is better)
Translates to: VFRYISGRLLHC*SLVDNVNPSIF
Trigger: GAAAATGGAAGGATTCACGTTGTCTACAAGAGATCAGCAGTGGAGCAGCCTCCCAGAGATGTATCTGAAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS GCA 72 bp AAATCTCTTCCAAATGCCGTGACGTTGAAGAACAAATaGTCTGAGTTAGATGACACGTCCCTGGGTGACCTC +
Preference number: 6 (lower is better)
Translates to: KSLPNAVTLKNK*SELDDTSLGDL
Trigger: GAGGTCACCCAGGGACGTGTCATCTAACTCAGAGCATTTGTTCTTCAACGTCACGGCATTTGGAAGAGATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
ENSMUST00000198151.2
CDS GCA 72 bp CATCTGATGCTGAGAGAAATGAAGCATATGAGGACATaGAATAGCCATCTTTGCGCTGGGAGGCAAAGGCAT +
Preference number: 6 (lower is better)
Translates to: HLMLREMKHMRT*NSHLCAGRQRH
Trigger: ATGCCTTTGCCTCCCAGCGCAAAGATGGCTATTGCATGTCCTCATATGCTTCATTTCTCTCAGCATCAGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198151.2
CDS CCA 72 bp ACACTCTTTGCATCATCTTTCTTTGGGGTTCTTGTCTaGGGAGAAGCACCTATTGAATCGCTGATAGCAGGG +
Preference number: 6 (lower is better)
Translates to: TLFASSFFGVLV*GEAPIESLIAG
Trigger: CCCTGCTATCAGCGATTCAATAGGTGCTTCTCCCCAGACAAGAACCCCAAAGAAAGATGATGCAAAGAGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 72 bp AAATTTGGTCCACGACCCCCAGTTGCCATCTTGCTTTaGCTGGTTAGCATTCTTCCACATGCAGTGTCCTTT +
Preference number: 6 (lower is better)
Translates to: KFGPRPPVAILL*LVSILPHAVSF
Trigger: AAAGGACACTGCATGTGGAAGAATGCTAACCAGCAAAAGCAAGATGGCAACTGGGGGTCGTGGACCAAATTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 72 bp ATCTTTGTAAGAGCATCGCGTTCCGTCGTGCACCAGTaGTTTCATGTAAGCAACATCCCCAGTCTCTTTGGA +
Preference number: 6 (lower is better)
Translates to: IFVRASRSVVHQ*FHVSNIPSLFG
Trigger: TCCAAAGAGACTGGGGATGTTGCTTACATGAAACAACTGGTGCACGACGGAACGCGATGCTCTTACAAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 72 bp GTACCACTGCGCTTGCTACATGATTCGCAGCATAACTaGTTATACCCTGGTATGGAGCAGTATCTTGCTAGC +
Preference number: 6 (lower is better)
Translates to: VPLRLLHDSQHN*LYPGMEQYLAS
Trigger: GCTAGCAAGATACTGCTCCATACCAGGGTATAACAAGTTATGCTGCGAATCATGTAGCAAGCGCAGTGGTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS TCA 72 bp CTTCATCCATCTGCTTCCCTCTCTCCAAGGGTTCAATaGAATACTCTTCATCATCGCTCTTTATCATCCCAG +
Preference number: 6 (lower is better)
Translates to: LHPSASLSPRVQ*NTLHHRSLSSQ
Trigger: CTGGGATGATAAAGAGCGATGATGAAGAGTATTTCATTGAACCCTTGGAGAGAGGGAAGCAGATGGATGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 72 bp AGCAGTATCTTGCTAGCACCTCCATTTGACAGAATATaGACTTGTCACCCAAACATGGCTCATCATTACAGG +
Preference number: 6 (lower is better)
Translates to: SSILLAPPFDRI*TCHPNMAHHYR
Trigger: CCTGTAATGATGAGCCATGTTTGGGTGACAAGTCCATATTCTGTCAAATGGAGGTGCTAGCAAGATACTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 72 bp ACACATCTTGTAGCCAACGCCAAAGTCAAAACGGCATaGCTCATCCATGGAGTAATTAATTCCGGGAAGTTC +
Preference number: 6 (lower is better)
Translates to: THLVANAKVKTA*LIHGVINSGKF
Trigger: GAACTTCCCGGAATTAATTACTCCATGGATGAGCAATGCCGTTTTGACTTTGGCGTTGGCTACAAGATGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CAA 90 bp TTTTTAGTTTCTCTTGTTTCAGCAAGAGAAATATTACGAGCTCCTTaGGGTAAAACGAACGCGCCTCTCGTCTTCCCAAGTTTCCTGGGT +
Preference number: 6 (lower is better)
Translates to: FLVSLVSAREILRAP*GKTNAPLVFPSFLG
Trigger: ACCCAGGAAACTTGGGAAGACGAGAGGCGCGTTCGTTTTACCCAAAGGAGCTCGTAATATTTCTCTTGCTGAAACAAGAGAAACTAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163159.8
CDS CCA 72 bp TCAAAGTGCTTTTGGCATTCTTCTGTATTACAAAGCTaGTACTCAAAATTAACACCAGGGCAGTCCTGCCCA +
Preference number: 6 (lower is better)
Translates to: SKCFWHSSVLQS*YSKLTPGQSCP
Trigger: TGGGCAGGACTGCCCTGGTGTTAATTTTGAGTACCAGCTTTGTAATACAGAAGAATGCCAAAAGCACTTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8
CDS CCA 72 bp TACATGATTCGCAGCATAACTTGTTATACCCTGGTATaGAGCAGTATCTTGCTAGCACCTCCATTTGACAGA +
Preference number: 6 (lower is better)
Translates to: YMIRSITCYTLV*SSILLAPPFDR
Trigger: TCTGTCAAATGGAGGTGCTAGCAAGATACTGCTCCATACCAGGGTATAACAAGTTATGCTGCGAATCATGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061427.10
ENSMUST00000163159.8