RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ADAMTS20 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022449

Ensembl transcript IDs: ENSMUST00000035342.11, ENSMUST00000155907.2

Found 360 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CACCCAAAGAAAGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTaGGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCC +
Preference number: 1 (lower is better)
Translates to: HPKKGLNMEVSGSQG*ERSTDACVFTEQSP
Trigger: GGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCTTTCTTTGGGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
3UTR CCA 90 bp TGGATGCTTCAAGCTTATCCACTCCCTCACAGGAAAATAGCACCATaGAGCTCAGAAGCAAAGCCGCCAGATCCAGGTCCCCAGGTACTG +
Preference number: 1 (lower is better)
Translates to: WMLQAYPLPHRKIAP*SSEAKPPDPGPQVL
Trigger: CAGTACCTGGGGACCTGGATCTGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTTCCTGTGAGGGAGTGGATAAGCTTGAAGCATCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR CCA 90 bp CCACGCTGGGTAAGTTTAGAACTGCAGAGTGTTCAAAATACCAGGTaGAAGCCCCTGTGGATGCCTAACTCCTACAGAACATGGCCATGC +
Preference number: 1 (lower is better)
Translates to: PRWVSLELQSVQNTR*KPLWMPNSYRTWPC
Trigger: GCATGGCCATGTTCTGTAGGAGTTAGGCATCCACAGGGGCTTCCACCTGGTATTTTGAACACTCTGCAGTTCTAAACTTACCCAGCGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR CCA 90 bp TCGTGCAGAGGACATAATAGGCATCCGGGTTTCTCAGTTACGGCATaGTCTATGCACACACATCTCTGGAATACAGGGTCAGATATTCCA +
Preference number: 1 (lower is better)
Translates to: SCRGHNRHPGFSVTA*SMHTHLWNTGSDIP
Trigger: TGGAATATCTGACCCTGTATTCCAGAGATGTGTGTGCATAGACCATGCCGTAACTGAGAAACCCGGATGCCTATTATGTCCTCTGCACGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR GCA 90 bp GCACCAAGGAGAGGGGCCATTCGTTCCAGCATAAGGTTTGTCAGTTaGTTAAAACATTTAGGTACTGACACAAGGGATAATAATACAGCA +
Preference number: 1 (lower is better)
Translates to: APRRGAIRSSIRFVS*LKHLGTDTRDNNTA
Trigger: TGCTGTATTATTATCCCTTGTGTCAGTACCTAAATGTTTTAAGCAACTGACAAACCTTATGCTGGAACGAATGGCCCCTCTCCTTGGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR TCA 90 bp AAGGAACAAATGACTTCACTGAGTACCAGTAAGGCTTATGGCATATaGAAACAGCCAGCACACGTATCCCTGATGAAAATCTTAGCTCAG +
Preference number: 1 (lower is better)
Translates to: KEQMTSLSTSKAYGI*KQPAHVSLMKILAQ
Trigger: CTGAGCTAAGATTTTCATCAGGGATACGTGTGCTGGCTGTTTTCATATGCCATAAGCCTTACTGGTACTCAGTGAAGTCATTTGTTCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR CCA 90 bp GTCAGATATTCCAGTGCAGTACATAGACAAATGCATATACCACGCTaGGTAAGTTTAGAACTGCAGAGTGTTCAAAATACCAGGTGGAAG +
Preference number: 1 (lower is better)
Translates to: VRYSSAVHRQMHIPR*VSLELQSVQNTRWK
Trigger: CTTCCACCTGGTATTTTGAACACTCTGCAGTTCTAAACTTACCCAGCGTGGTATATGCATTTGTCTATGTACTGCACTGGAATATCTGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR GCA 90 bp CACACCAGGACAGTTGATGGTCAGCTTTCAGAAGCAGTAATCAGATaGAAGATAGTTATGAATTTTTCCACTTACAAAGAGGAAATTCAA +
Preference number: 1 (lower is better)
Translates to: HTRTVDGQLSEAVIR*KIVMNFSTYKEEIQ
Trigger: TTGAATTTCCTCTTTGTAAGTGGAAAAATTCATAACTATCTTGCATCTGATTACTGCTTCTGAAAGCTGACCATCAACTGTCCTGGTGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR-3UTR CCA 90 bp CACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGAAGCTTGGGGATCGTAGGTGGAAGCCCCTGTaGATGCCTAACTCCTACAGA +
Preference number: 2 (lower is better)
Translates to: HTEDLCNPPLLLWKLGDRRWKPL*MPNSYR
Trigger: TCTGTAGGAGTTAGGCATCCACAGGGGCTTCCACCT...ACGATCCCCAAGCTTCCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR-3UTR TCA 90 bp TATCCACTCCCTCACAGGAAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAACACACCAGGACAGTTaGTGGTCAGCTTTCAGAAGC +
Preference number: 2 (lower is better)
Translates to: YPLPHRKIAPWSSEAKPPTHQDS*WSAFRS
Trigger: GCTTCTGAAAGCTGACCATCAACTGTCCTGGTGTGT...TGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTTCCTGTGAGGGAGTGGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR-3UTR TCA 90 bp CACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGAAGCTTGGGGATCGTTCAGCATCATCACAGTaGGGTATTGCAGCACCTATC +
Preference number: 2 (lower is better)
Translates to: HTEDLCNPPLLLWKLGDRSASSQ*GIAAPI
Trigger: GATAGGTGCTGCAATACCTCACTGTGATGATGCTGA...ACGATCCCCAAGCTTCCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR-3UTR TCA 90 bp AAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAGATCCAGGTCCCCAGGTACATTGTGCACAAATCTaGTTAATTGGAGTGAAGGTC +
Preference number: 2 (lower is better)
Translates to: KIAPWSSEAKPPDPGPQVHCAQI*LIGVKV
Trigger: GACCTTCACTCCAATTAATCAGATTTGTGCACAATG...TACCTGGGGACCTGGATCTGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR-3UTR CCA 90 bp AAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAGATCCAGGTCCCCAGGTACCACACGGTGGAAAATaGATATTCATAGTAAATTAC +
Preference number: 2 (lower is better)
Translates to: KIAPWSSEAKPPDPGPQVPHGGK*IFIVNY
Trigger: GTAATTTACTATGAATATCCATTTTCCACCGTGTGG...TACCTGGGGACCTGGATCTGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR-3UTR CCA 90 bp AACAGTTGTGTGGTACACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGATGCACACACATCTCTaGAATACAGGGTCAGATATT +
Preference number: 2 (lower is better)
Translates to: NSCVVHTEDLCNPPLLLWMHTHL*NTGSDI
Trigger: AATATCTGACCCTGTATTCCAGAGATGTGTGTGCAT...CCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTGTACCACACAACTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR-3UTR CCA 90 bp GTTTCTGTCCTGTACTTTAGACATGCCTTTCTGTCCACCAAGGTCTCAGCAAAAACAAATCTGATTAATTaGAGTGAAGGTCAGAGGTGT +
Preference number: 2 (lower is better)
Translates to: VSVLYFRHAFLSTKVSAKTNLIN*SEGQRC
Trigger: ACACCTCTGACCTTCACTCCAATTAATCAGATTTGT...TTTTGCTGAGACCTTGGTGGACAGAAAGGCATGTCTAAAGTACAGGACAGAAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR-3UTR CCA 90 bp TTCTGTCCACCAAGGTCTCAGCAAAACCTTCTAAGAAATGGCCTGATAGTAAATAGTACGTCCACACGGTaGAAAATGGATATTCATAGT +
Preference number: 2 (lower is better)
Translates to: FCPPRSQQNLLRNGLIVNSTSTR*KMDIHS
Trigger: ACTATGAATATCCATTTTCCACCGTGTGGACGTACT...ATTTACTATCAGGCCATTTCTTAGAAGGTTTTGCTGAGACCTTGGTGGACAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR CCA 72 bp CAAGCTTATCCACTCCCTCACAGGAAAATAGCACCATaGAGCTCAGAAGCAAAGCCGCCAGATCCAGGTCCC +
Preference number: 3 (lower is better)
Translates to: QAYPLPHRKIAP*SSEAKPPDPGP
Trigger: GGGACCTGGATCTGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTTCCTGTGAGGGAGTGGATAAGCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR CCA 72 bp GGTATTGCAGCACCTATCAGGAAGCGGAGAGGCAGGTaGATGCTTCAAGCTTATCCACTCCCTCACAGGAAA +
Preference number: 3 (lower is better)
Translates to: GIAAPIRKRRGR*MLQAYPLPHRK
Trigger: TTTCCTGTGAGGGAGTGGATAAGCTTGAAGCATCCACCTGCCTCTCCGCTTCCTGATAGGTGCTGCAATACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR TCA 72 bp TGGTCTGAAACCCCAATGAGCACCCAAAGAAAGGTTTaGATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGA +
Preference number: 3 (lower is better)
Translates to: WSETPMSTQRKV*IWKSREARGER
Trigger: TCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCTTTCTTTGGGTGCTCATTGGGGTTTCAGACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
3UTR TCA 72 bp ATCCCTGATGAAAATCTTAGCTCAGCATCATCACAGTaGGGTATTGCAGCACCTATCAGGAAGCGGAGAGGC +
Preference number: 3 (lower is better)
Translates to: IPDENLSSASSQ*GIAAPIRKRRG
Trigger: GCCTCTCCGCTTCCTGATAGGTGCTGCAATACCTCACTGTGATGATGCTGAGCTAAGATTTTCATCAGGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR CCA 72 bp AAATGGCCTGATAGTAAATATTTCCACCATTGTGGCTaGCAGAGTCAGCTCAACCGCTGTGGTGTAGCATCC +
Preference number: 3 (lower is better)
Translates to: KWPDSKYFHHCG*QSQLNRCGVAS
Trigger: GGATGCTACACCACAGCGGTTGAGCTGACTCTGCCAGCCACAATGGTGGAAATATTTACTATCAGGCCATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR-3UTR CAA 90 bp AACAGTTGTGTGGTACACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGAACACACCAGGACAGTaGATGGTCAGCTTTCAGAAG +
Preference number: 3 (lower is better)
Translates to: NSCVVHTEDLCNPPLLLWNTPGQ*MVSFQK
Trigger: CTTCTGAAAGCTGACCATCAACTGTCCTGGTGTGTT...CCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTGTACCACACAACTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR CCA 72 bp GTAAGTTTAGAACTGCAGAGTGTTCAAAATACCAGGTaGAAGCCCCTGTGGATGCCTAACTCCTACAGAACA +
Preference number: 3 (lower is better)
Translates to: VSLELQSVQNTR*KPLWMPNSYRT
Trigger: TGTTCTGTAGGAGTTAGGCATCCACAGGGGCTTCCACCTGGTATTTTGAACACTCTGCAGTTCTAAACTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR-3UTR CAA 90 bp TTCTGTCCACCAAGGTCTCAGCAAAACCTTCTAAGAAATGGCCTGATAGTAAATCATCACAGTGAGGTATaGCAGCACCTATCAGGAAGC +
Preference number: 3 (lower is better)
Translates to: FCPPRSQQNLLRNGLIVNHHSEV*QHLSGS
Trigger: GCTTCCTGATAGGTGCTGCAATACCTCACTGTGATG...ATTTACTATCAGGCCATTTCTTAGAAGGTTTTGCTGAGACCTTGGTGGACAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR CCA 72 bp AAGATTACTCGGTTAGCTGCGTTTGAAACAGTTGTGTaGTACACACTGAAGATCTCTGCAATCCTCCCTTAC +
Preference number: 3 (lower is better)
Translates to: KITRLAAFETVV*YTLKISAILPY
Trigger: GTAAGGGAGGATTGCAGAGATCTTCAGTGTGTACCACACAACTGTTTCAAACGCAGCTAACCGAGTAATCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR GCA 72 bp AGAGGGGCCATTCGTTCCAGCATAAGGTTTGTCAGTTaGTTAAAACATTTAGGTACTGACACAAGGGATAAT +
Preference number: 3 (lower is better)
Translates to: RGAIRSSIRFVS*LKHLGTDTRDN
Trigger: ATTATCCCTTGTGTCAGTACCTAAATGTTTTAAGCAACTGACAAACCTTATGCTGGAACGAATGGCCCCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR CCA 72 bp TCCAGTGCAGTACATAGACAAATGCATATACCACGCTaGGTAAGTTTAGAACTGCAGAGTGTTCAAAATACC +
Preference number: 3 (lower is better)
Translates to: SSAVHRQMHIPR*VSLELQSVQNT
Trigger: GGTATTTTGAACACTCTGCAGTTCTAAACTTACCCAGCGTGGTATATGCATTTGTCTATGTACTGCACTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR CCA 72 bp AGTGGAATGTTAACATTGTGCACAAATCTGATTAATTaGAGTGAAGGTCAGAGGTGTAATGAAAGAAAGCAT +
Preference number: 3 (lower is better)
Translates to: SGMLTLCTNLIN*SEGQRCNERKH
Trigger: ATGCTTTCTTTCATTACACCTCTGACCTTCACTCCAATTAATCAGATTTGTGCACAATGTTAACATTCCACT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR TCA 72 bp TATATACACATATATTCCCTTAGTTTTCTAACTGGATaGGCAGGGTCTATTGACATTCATGTCAGTCATGAA +
Preference number: 3 (lower is better)
Translates to: YIHIYSLSFLTG*AGSIDIHVSHE
Trigger: TTCATGACTGACATGAATGTCAATAGACCCTGCTCATCCAGTTAGAAAACTAAGGGAATATATGTGTATATA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR CCA 72 bp AGTAATATATTCCTAACCCACAGTACGTCCACACGGTaGAAAATGGATATTCATAGTAAATTACTACATAAG +
Preference number: 3 (lower is better)
Translates to: SNIFLTHSTSTR*KMDIHSKLLHK
Trigger: CTTATGTAGTAATTTACTATGAATATCCATTTTCCACCGTGTGGACGTACTGTGGGTTAGGAATATATTACT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp GCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCGCTCATGGGCGATGGTaGAGGCGGCGCTCAGCCCGT +
Preference number: 4 (lower is better)
Translates to: APTPVFSQSNPPSRSFQAAHGRW*RRRSAR
Trigger: ACGGGCTGAGCGCCGCCTTCACCATCGCCCATGAGC...GGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp GGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACCACCGGCGCAGCTTCTaGAGCATGCTCCCCAAGGGC +
Preference number: 4 (lower is better)
Translates to: GSLGKPGVREEHRRLCFHHRRSF*SMLPKG
Trigger: GCCCTTGGGGAGCATGCTCCAGAAGCTGCGCCGGTG...GTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp CTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCACTCGGCTGGGAGGCTTaGGCTGGTCACCACAGTACT +
Preference number: 4 (lower is better)
Translates to: LGKPGVREEHRRLCFHRALGWEA*AGHHST
Trigger: AGTACTGTGGTGACCAGCTCAAGCCTCCCAGCCGAG...TGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp CTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAGACCAGTCCCCTGCTTaGCACTCTCCACAAGGGCTG +
Preference number: 4 (lower is better)
Translates to: LGKPGVREEHRRLCFHRADQSPA*HSPQGL
Trigger: CAGCCCTTGTGGAGAGTGGCAAGCAGGGGACTGGTC...TGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp GCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCGCTGTAGGGTCCCCATaGTCCCCACTCGCCATCCAC +
Preference number: 4 (lower is better)
Translates to: APTPVFSQSNPPSRSFQAAVGSP*SPLAIH
Trigger: GTGGATGGCGAGTGGGGACCATGGGGACCCTACAGC...GGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp GGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCCCTGTGGGCATCTaGCAGCGCTGTAGCAGTCCC +
Preference number: 4 (lower is better)
Translates to: GAPTPVFSQSNPPSRSFQAPVGI*QRCSSP
Trigger: GGGACTGCTACAGCGCTGCCAGATGCCCACAGGGGC...TTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp ATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTGGAGCCACAGTGCCTTaGCTCTGGGGGCTTGGAGGA +
Preference number: 4 (lower is better)
Translates to: IWKSREARGERGAPTPVFGATVP*LWGLGG
Trigger: TCCTCCAAGCCCCCAGAGTCAAGGCACTGTGGCTCC...AAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp CGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATGGAACGTGGCTTGGCTaGTCAGAGGAGCTGGGAGCT +
Preference number: 4 (lower is better)
Translates to: REARGERGAPTPVFSQSNGTWLG*SEELGA
Trigger: AGCTCCCAGCTCCTCTGAGCAGCCAAGCCACGTTCC...ATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp GGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAACACACAGCCCACGGTaGCAGTGCATCCCGGGACCA +
Preference number: 4 (lower is better)
Translates to: GAPTPVFSQSNPPSRSFQTHSPR*QCIPGP
Trigger: TGGTCCCGGGATGCACTGCCACCGTGGGCTGTGTGT...TTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp AGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGGGTCTCCATGTCCCTaGTCACACACAGCCCACGGT +
Preference number: 4 (lower is better)
Translates to: SLGKPGVREEHRRLCFHRGSPCP*SHTAHG
Trigger: ACCGTGGGCTGTGTGTGACCAGGGACATGGAGACCC...TCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp GACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGACTTCCCAGGACCCAGTaGGAAGGAGCGAGATCGGGC +
Preference number: 4 (lower is better)
Translates to: DACVFTEQSPFTVLPSLGLPRTQ*EGARSG
Trigger: GCCCGATCTCGCTCCTTCTCACTGGGTCCTGGGAAG...TCCAAGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp CTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCAGGGCCAAACATaGGCTCACACTGCCTGTTCC +
Preference number: 4 (lower is better)
Translates to: LGKPGVREEHRRLCFHRAIQGQT*AHTACS
Trigger: GGAACAGGCAGTGTGAGCTCATGTTTGGCCCTGGAT...TGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp GCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCGGGTCTTCACTCAGCTaGCACCAAACCTGTCGCTGC +
Preference number: 4 (lower is better)
Translates to: APTPVFSQSNPPSRSFQAGSSLS*HQTCRC
Trigger: GCAGCGACAGGTTTGGTGTCAGCTGAGTGAAGACCC...GGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp GAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTCCACTGGTTTCCTCTaGTTGACAGCTGGGCCCCCT +
Preference number: 4 (lower is better)
Translates to: ERGAPTPVFSQSNPPSRSSTGFL*LTAGPP
Trigger: AGGGGGCCCAGCTGTCAATCAGAGGAAACCAGTGGA...GGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp CGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGACGGGGCAGGCGTGCAGGTaGCACTGCATCATGCTAGGT +
Preference number: 4 (lower is better)
Translates to: RLCFHRAIPLHGPSKPWTGQACR*HCIMLG
Trigger: ACCTAGCATGATGCAGTGTCACCTGCACGCCTGCCC...CGTCCAAGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp CTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCACATAACGGGCCTGACTaGCTCTTCCACAGGACACAG +
Preference number: 4 (lower is better)
Translates to: LGKPGVREEHRRLCFHRAHNGPD*LFHRTQ
Trigger: CTGTGTCCTGTGGAAGAGGCAGTCAGGCCCGTTATG...TGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp GAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCCAGTGCCTCTCAGCCTaGAGTACACCTCCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: EEHRRLCFHRAIPLHGPSQCLSA*STPPSA
Trigger: AGCAGAGGGAGGTGTACTGCAGGCTGAGAGGCACTG...GGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp AGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCACGTGTCCAAGCTCATaGGCGATGGTGAAGGCGGCG +
Preference number: 4 (lower is better)
Translates to: RGAPTPVFSQSNPPSRSFTCPSS*AMVKAA
Trigger: CGCCGCCTTCACCATCGCCCATGAGCTTGGACACGT...GAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp GAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCGTCCTCCACAGAGACTaGAGACAGCAGTGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: EEHRRLCFHRAIPLHGPSVLHRD*RQQCGP
Trigger: AGGACCACACTGCTGTCTTCAGTCTCTGTGGAGGAC...GGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp GGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAAATGGAGCAGCTCCGTaGAGGATCACACAGGGTGCC +
Preference number: 4 (lower is better)
Translates to: GAPTPVFSQSNPPSRSFQNGAAP*RITQGA
Trigger: GGCACCCTGTGTGATCCTTCACGGAGCTGCTCCATT...TTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp AGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGACGTAATGGGCACTGTTaGAGACACCTGCCAGGGTCT +
Preference number: 4 (lower is better)
Translates to: SLGKPGVREEHRRLCFHRRNGHC*RHLPGS
Trigger: AGACCCTGGCAGGTGTCTTCAACAGTGCCCATTACG...TCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp ATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTCTGGTTTCCTCTGATTaGCAGCTGGGCCCCCTGATC +
Preference number: 4 (lower is better)
Translates to: IWKSREARGERGAPTPVFLVSSD*QLGPLI
Trigger: GATCAGGGGGCCCAGCTGTCAATCAGAGGAAACCAG...AAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp AGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGATCCACTGGTACCTCATaGAGTCCTGACGCCAGCACT +
Preference number: 4 (lower is better)
Translates to: SLGKPGVREEHRRLCFHRSTGTS*SPDAST
Trigger: AGTGCTGGCGTCAGGACTGCATGAGGTACCAGTGGA...TCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp GAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCACACCTGCCAGGGTCTaGCACGAAGAGTTGTCACCA +
Preference number: 4 (lower is better)
Translates to: ERGAPTPVFSQSNPPSRSTPARV*HEELSP
Trigger: TGGTGACAACTCTTCGTGCCAGACCCTGGCAGGTGT...GGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp GACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGAACAGCTGCCATGGCATaGCTCTCGGCTGGGAGGCTT +
Preference number: 4 (lower is better)
Translates to: DACVFTEQSPFTVLPSLGTAAMA*LSAGRL
Trigger: AAGCCTCCCAGCCGAGAGCCATGCCATGGCAGCTGT...TCCAAGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp TATCCACTCCCTCACAGGAAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCACACCGGCGCAGCTTCTaGAGCATGCTCCCCAAGGGC +
Preference number: 4 (lower is better)
Translates to: YPLPHRKIAPWSSEAKPPHRRSF*SMLPKG
Trigger: GCCCTTGGGGAGCATGCTCCAGAAGCTGCGCCGGTG...TGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTTCCTGTGAGGGAGTGGATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp GGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACTCTGTGATATGCTTCTaGCTGCATGCTGACCAGGTC +
Preference number: 4 (lower is better)
Translates to: GSLGKPGVREEHRRLCFHSVICF*LHADQV
Trigger: GACCTGGTCAGCATGCAGTCAGAAGCATATCACAGA...GTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp GCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGCCACACTGGGATaGGCAGTCGCTTTTCCCAAT +
Preference number: 4 (lower is better)
Translates to: APTPVFSQSNPPSRSFQALATLG*AVAFPN
Trigger: ATTGGGAAAAGCGACTGCTCATCCCAGTGTGGCCAA...GGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp AGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAAAGTTGATGCTGAACTaGCCCTGTGGGCATCTGGCA +
Preference number: 4 (lower is better)
Translates to: SLGKPGVREEHRRLCFHRKLMLN*PCGHLA
Trigger: TGCCAGATGCCCACAGGGGCAGTTCAGCATCAACTT...TCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp AAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAGATCCAGGTCCCCAGGTAACGTGTCCAAGCTCATaGGCGATGGTGAAGGCGGCG +
Preference number: 4 (lower is better)
Translates to: KIAPWSSEAKPPDPGPQVTCPSS*AMVKAA
Trigger: CGCCGCCTTCACCATCGCCCATGAGCTTGGACACGT...TACCTGGGGACCTGGATCTGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp CACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGAAGCTTGGGGATCGTACACACAGCCCACGGTaGCAGTGCATCCCGGGACCA +
Preference number: 4 (lower is better)
Translates to: HTEDLCNPPLLLWKLGDRTHSPR*QCIPGP
Trigger: TGGTCCCGGGATGCACTGCCACCGTGGGCTGTGTGT...ACGATCCCCAAGCTTCCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp AGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCAAAACACAGCTGCCATaGCATGGCTCTCGGCTGGGA +
Preference number: 4 (lower is better)
Translates to: RFEYGSLGKPGVREEHRRKTQLP*HGSRLG
Trigger: TCCCAGCCGAGAGCCATGCCATGGCAGCTGTGTTTT...GCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp AGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCTTTCTGCTGGGAACGTaGCTTGGCTGCTCAGAGGAG +
Preference number: 4 (lower is better)
Translates to: RGAPTPVFSQSNPPSRSFFLLGT*LGCSEE
Trigger: CTCCTCTGAGCAGCCAAGCCACGTTCCCAGCAGAAA...GAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp GGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGCCGTCTTGGGACCTGTaGATGATGACAGAGGCATAC +
Preference number: 4 (lower is better)
Translates to: GERGAPTPVFSQSNPPSRPSWDL*MMTEAY
Trigger: GTATGCCTCTGTCATCATCCACAGGTCCCAAGACGG...CCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp GAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCCCCCATCATTTGCTTTaGATGTCCCCATCAGTCCTC +
Preference number: 4 (lower is better)
Translates to: ERGAPTPVFSQSNPPSRSPHHLL*MSPSVL
Trigger: GAGGACTGATGGGGACATTCAAAGCAAATGATGGGG...GGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTC
56% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp CTCCCTTACTGCTCTGGAAGCTTGGGGATCGTTTTCTTGACTGACTATTTCTGTGCTCATGGGCGATGGTaGAGGCGGCGCTCAGCCCGT +
Preference number: 4 (lower is better)
Translates to: LPYCSGSLGIVFLTDYFCAHGRW*RRRSAR
Trigger: ACGGGCTGAGCGCCGCCTTCACCATCGCCCATGAGC...ACAGAAATAGTCAGTCAAGAAAACGATCCCCAAGCTTCCAGAGCAGTAAGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp CGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGACGGTAGGGACACACTTGTaGTCCAGGGCCAAACATGAG +
Preference number: 4 (lower is better)
Translates to: RLCFHRAIPLHGPSKPWTVGTHL*SRAKHE
Trigger: CTCATGTTTGGCCCTGGATCACAAGTGTGTCCCTAC...CGTCCAAGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp CGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATTTGGAGTTTAACACGTaGTCACAGCCAGCTTGCCGA +
Preference number: 4 (lower is better)
Translates to: REARGERGAPTPVFSQSNLEFNT*SQPACR
Trigger: TCGGCAAGCTGGCTGTGATCACGTGTTAAACTCCAA...ATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp TATCCACTCCCTCACAGGAAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCACTCGGCTGGGAGGCTTaGGCTGGTCACCACAGTACT +
Preference number: 4 (lower is better)
Translates to: YPLPHRKIAPWSSEAKPPLGWEA*AGHHST
Trigger: AGTACTGTGGTGACCAGCTCAAGCCTCCCAGCCGAG...TGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTTCCTGTGAGGGAGTGGATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp CACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTTTACCACAGGAAGCTaGGCACGACTTCCATGGTCC +
Preference number: 4 (lower is better)
Translates to: HRRLCFHRAIPLHGPSKPFTTGS*ARLPWS
Trigger: GGACCATGGAAGTCGTGCTCAGCTTCCTGTGGTAAA...AGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp ATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCTTCTGTGGGGAAGTaGACCCACAGTTACCTGCAC +
Preference number: 4 (lower is better)
Translates to: IWKSREARGERGAPTPVFSSVGK*THSYLH
Trigger: GTGCAGGTAACTGTGGGTTCACTTCCCCACAGAAGA...AAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp AGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCTTGTCAAAACACAGCTaGCATGGCATGGCTCTCGGC +
Preference number: 4 (lower is better)
Translates to: RGAPTPVFSQSNPPSRSFLSKHS*HGMALG
Trigger: GCCGAGAGCCATGCCATGGCAGCTGTGTTTTGACAA...GAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp TTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGCACCACAGGTTTGTGTaGATTCTCCCCAGTCCCCAT +
Preference number: 4 (lower is better)
Translates to: FEYGSLGKPGVREEHRRLHHRFV*ILPSPH
Trigger: ATGGGGACTGGGGAGAATGCACACAAACCTGTGGTG...CAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp GCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCGGTTCTCCAGCTGCATaGCTGAGCAATGGATCTTCA +
Preference number: 4 (lower is better)
Translates to: APTPVFSQSNPPSRSFQAGSPAA*LSNGSS
Trigger: TGAAGATCCATTGCTCAGGCATGCAGCTGGAGAACC...GGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp TTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGCTAGGGTTCTCCAGCTaGATGCCTGAGCAATGGATC +
Preference number: 4 (lower is better)
Translates to: FEYGSLGKPGVREEHRRLLGFSS*MPEQWI
Trigger: GATCCATTGCTCAGGCATGCAGCTGGAGAACCCTAG...CAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp TATCCACTCCCTCACAGGAAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAGGGTCTCCATGTCCCTaGTCACACACAGCCCACGGT +
Preference number: 4 (lower is better)
Translates to: YPLPHRKIAPWSSEAKPPGSPCP*SHTAHG
Trigger: ACCGTGGGCTGTGTGTGACCAGGGACATGGAGACCC...TGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTTCCTGTGAGGGAGTGGATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp GGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAATGCCGACAGAGGCCCTaGACACAGATGTCGTTAGTT +
Preference number: 4 (lower is better)
Translates to: GAPTPVFSQSNPPSRSFQCRQRP*TQMSLV
Trigger: AACTAACGACATCTGTGTCCAGGGCCTCTGTCGGCA...TTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp GCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCAGAAACCATCCCTCATaGGGTCTTCACTCAGCTGAC +
Preference number: 4 (lower is better)
Translates to: APTPVFSQSNPPSRSFQARNHPS*GLHSAD
Trigger: GTCAGCTGAGTGAAGACCCCATGAGGGATGGTTTCT...GGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp AGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGAGGCCGGGTGGATaGATCACACATGTCTTCAGA +
Preference number: 4 (lower is better)
Translates to: RFEYGSLGKPGVREEHRRLRPGG*ITHVFR
Trigger: TCTGAAGACATGTGTGATCCATCCACCCGGCCTCAG...GCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp TATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTGTGTTTCTGGAGCTCTaGGAGGGCAAAGCAGTTTTC +
Preference number: 4 (lower is better)
Translates to: YGSLGKPGVREEHRRLCFVFLEL*EGKAVF
Trigger: GAAAACTGCTTTGCCCTCTCAGAGCTCCAGAAACAC...AAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp GACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGAGTTCGCCTTCCAATCTaGACACCGCTTCCTCTTCGA +
Preference number: 4 (lower is better)
Translates to: DACVFTEQSPFTVLPSLGVRLPI*TPLPLR
Trigger: TCGAAGAGGAAGCGGTGTTCAGATTGGAAGGCGAAC...TCCAAGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp CACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGAAGCTTGGGGATCGTAATGGAGCAGCTCCGTaGAGGATCACACAGGGTGCC +
Preference number: 4 (lower is better)
Translates to: HTEDLCNPPLLLWKLGDRNGAAP*RITQGA
Trigger: GGCACCCTGTGTGATCCTTCACGGAGCTGCTCCATT...ACGATCCCCAAGCTTCCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp AAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAGATCCAGGTCCCCAGGTAATCCAGGGCCAAACATaGGCTCACACTGCCTGTTCC +
Preference number: 4 (lower is better)
Translates to: KIAPWSSEAKPPDPGPQVIQGQT*AHTACS
Trigger: GGAACAGGCAGTGTGAGCTCATGTTTGGCCCTGGAT...TACCTGGGGACCTGGATCTGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp AAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAGATCCAGGTCCCCAGGTACGTAATGGGCACTGTTaGAGACACCTGCCAGGGTCT +
Preference number: 4 (lower is better)
Translates to: KIAPWSSEAKPPDPGPQVRNGHC*RHLPGS
Trigger: AGACCCTGGCAGGTGTCTTCAACAGTGCCCATTACG...TACCTGGGGACCTGGATCTGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp AGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAGCACCCTGGATGTTaGTCTCTTTCTTCGCCATAC +
Preference number: 4 (lower is better)
Translates to: RGAPTPVFSQSNPPSRSFQHPGC*SLSSPY
Trigger: GTATGGCGAAGAAAGAGATCAACATCCAGGGTGCTG...GAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp AGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGATTCCTTTTCCACATGTaGCAGGACACTCACTCCACT +
Preference number: 4 (lower is better)
Translates to: SLGKPGVREEHRRLCFHRFLFHM*QDTHST
Trigger: AGTGGAGTGAGTGTCCTGTCACATGTGGAAAAGGAA...TCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp TATCCACTCCCTCACAGGAAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAGGGTCTTCACTCAGCTaGCACCAAACCTGTCGCTGC +
Preference number: 4 (lower is better)
Translates to: YPLPHRKIAPWSSEAKPPGSSLS*HQTCRC
Trigger: GCAGCGACAGGTTTGGTGTCAGCTGAGTGAAGACCC...TGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTTCCTGTGAGGGAGTGGATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp GCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTAACAGCACGCATCTaGTATCCATGTCCACAGGTG +
Preference number: 4 (lower is better)
Translates to: APTPVFSQSNPPSRSFQALTARI*YPCPQV
Trigger: CACCTGTGGACATGGATATCAGATGCGTGCTGTTAA...GGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp GCACCCAAAGAAAGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGACTCTCCACAAGGGCTaGAGCAGAGAGACACCGCAG +
Preference number: 4 (lower is better)
Translates to: APKERFEYGSLGKPGVRETLHKG*SRETPQ
Trigger: CTGCGGTGTCTCTCTGCTTCAGCCCTTGTGGAGAGT...CTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCTTTCTTTGGGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp AACAGTTGTGTGGTACACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGGGAGCCACAGTGCCTTaGCTCTGGGGGCTTGGAGGA +
Preference number: 4 (lower is better)
Translates to: NSCVVHTEDLCNPPLLLWGATVP*LWGLGG
Trigger: TCCTCCAAGCCCCCAGAGTCAAGGCACTGTGGCTCC...CCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTGTACCACACAACTGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR GCA 90 bp CGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCTTTTCCCAATGATGTaGCACCTGAGTTCACAGTCC +
Preference number: 4 (lower is better)
Translates to: REARGERGAPTPVFSQSNLFPMM*HLSSQS
Trigger: GGACTGTGAACTCAGGTGGCACATCATTGGGAAAAG...ATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp AAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAGATCCAGGTCCCCAGGTACATAACGGGCCTGACTaGCTCTTCCACAGGACACAG +
Preference number: 4 (lower is better)
Translates to: KIAPWSSEAKPPDPGPQVHNGPD*LFHRTQ
Trigger: CTGTGTCCTGTGGAAGAGGCAGTCAGGCCCGTTATG...TACCTGGGGACCTGGATCTGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp GACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGACTCCAGTCGTGTTTCTaGAGCTCTGAGAGGGCAAAG +
Preference number: 4 (lower is better)
Translates to: DACVFTEQSPFTVLPSLGLQSCF*SSERAK
Trigger: CTTTGCCCTCTCAGAGCTCCAGAAACACGACTGGAG...TCCAAGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp GCACCCAAAGAAAGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGCTGCTCAGAGGAGCTaGGAGCTCGGCTGTATAAGG +
Preference number: 4 (lower is better)
Translates to: APKERFEYGSLGKPGVREAAQRS*ELGCIR
Trigger: CCTTATACAGCCGAGCTCCCAGCTCCTCTGAGCAGC...CTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCTTTCTTTGGGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp GACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGACTGCATCATGCTAGGTaGCTTGGGCAGTTCACAGCT +
Preference number: 4 (lower is better)
Translates to: DACVFTEQSPFTVLPSLGLHHAR*LGQFTA
Trigger: AGCTGTGAACTGCCCAAGCCACCTAGCATGATGCAG...TCCAAGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp CCCAAAGAAAGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGGCCCCTGAGGCCGGGTaGATGGATCACACATGTCTT +
Preference number: 4 (lower is better)
Translates to: PKERFEYGSLGKPGVREEAPEAG*MDHTCL
Trigger: AAGACATGTGTGATCCATCCACCCGGCCTCAGGGGC...CTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCTTTCTTTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp GAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCTTCCCACTTTCCAAGTaGCTACATGCAGACAGCTTC +
Preference number: 4 (lower is better)
Translates to: EEHRRLCFHRAIPLHGPSFPLSK*LHADSF
Trigger: GAAGCTGTCTGCATGTAGCCACTTGGAAAGTGGGAA...GGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp GGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACTTAAACATAAGTCACTaGGCCAACCGTTCTCAGTCC +
Preference number: 4 (lower is better)
Translates to: GSLGKPGVREEHRRLCFHLNISH*ANRSQS
Trigger: GGACTGAGAACGGTTGGCCCAGTGACTTATGTTTAA...GTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp TTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTCATCCGGGACATTCTaGCTCTGTTGCCATAAGCAA +
Preference number: 4 (lower is better)
Translates to: FEYGSLGKPGVREEHRRLSSGTF*LCCHKQ
Trigger: TTGCTTATGGCAACAGAGTCAGAATGTCCCGGATGA...CAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp TATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCTCCAGCTGCATGCCTaGGCAATGGATCTTCAATAT +
Preference number: 4 (lower is better)
Translates to: YGSLGKPGVREEHRRLCFLQLHA*AMDLQY
Trigger: ATATTGAAGATCCATTGCTCAGGCATGCAGCTGGAG...AAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp AGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCATCGAAATTTCATCCTaGGGCCCACACAGTACCTTC +
Preference number: 4 (lower is better)
Translates to: RGAPTPVFSQSNPPSRSFIEISS*GPHSTF
Trigger: GAAGGTACTGTGTGGGCCGCAGGATGAAATTTCGAT...GAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp AGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCTCGGAAGTCTCGCTTaGCTTTTGGACATGAATCAG +
Preference number: 4 (lower is better)
Translates to: RGAPTPVFSQSNPPSRSFLGSLA*LLDMNQ
Trigger: CTGATTCATGTCCAAAAGGCAAGCGAGACTTCCGAG...GAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp GCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCAATAGCCAGGCAAGGTaGCAATATACAGTCCTGTCT +
Preference number: 4 (lower is better)
Translates to: APTPVFSQSNPPSRSFQANSQAR*QYTVLS
Trigger: AGACAGGACTGTATATTGGCACCTTGCCTGGCTATT...GGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp AACAGTTGTGTGGTACACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGGACCAGTCCCCTGCTTaGCACTCTCCACAAGGGCTG +
Preference number: 4 (lower is better)
Translates to: NSCVVHTEDLCNPPLLLWDQSPA*HSPQGL
Trigger: CAGCCCTTGTGGAGAGTGGCAAGCAGGGGACTGGTC...CCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTGTACCACACAACTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR GCA 90 bp ATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTTCCAAGTGGCTACATaGAGACAGCTTCTAAGGTCG +
Preference number: 4 (lower is better)
Translates to: IWKSREARGERGAPTPVFFQVAT*RQLLRS
Trigger: CGACCTTAGAAGCTGTCTGCATGTAGCCACTTGGAA...AAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp GAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCCTGAGCGAGCCACTTTaGTGTGTTGGATATCTTCAT +
Preference number: 4 (lower is better)
Translates to: ERGAPTPVFSQSNPPSRSLSEPL*CVGYLH
Trigger: ATGAAGATATCCAACACAGCAAAGTGGCTCGCTCAG...GGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp CTCCCTTACTGCTCTGGAAGCTTGGGGATCGTTTTCTTGACTGACTATTTCTGTGCTGTAGGGTCCCCATaGTCCCCACTCGCCATCCAC +
Preference number: 4 (lower is better)
Translates to: LPYCSGSLGIVFLTDYFCAVGSP*SPLAIH
Trigger: GTGGATGGCGAGTGGGGACCATGGGGACCCTACAGC...ACAGAAATAGTCAGTCAAGAAAACGATCCCCAAGCTTCCAGAGCAGTAAGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp AGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCAGTGGCATCGGTAAGTaGCCACAATTGTGGTCAGAT +
Preference number: 4 (lower is better)
Translates to: RFEYGSLGKPGVREEHRRSGIGK*PQLWSD
Trigger: ATCTGACCACAATTGTGGCCACTTACCGATGCCACT...GCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp CGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGACGGTACTGATCTCCTACTaGGACAGCCTGTCCTTTATG +
Preference number: 4 (lower is better)
Translates to: RLCFHRAIPLHGPSKPWTVLISY*DSLSFM
Trigger: CATAAAGGACAGGCTGTCCCAGTAGGAGATCAGTAC...CGTCCAAGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp AAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAGATCCAGGTCCCCAGGTATCTGTGATATGCTTCTaGCTGCATGCTGACCAGGTC +
Preference number: 4 (lower is better)
Translates to: KIAPWSSEAKPPDPGPQVSVICF*LHADQV
Trigger: GACCTGGTCAGCATGCAGTCAGAAGCATATCACAGA...TACCTGGGGACCTGGATCTGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp CGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGAGGAGAAAGTTCCCTTaGGTGTCAGATAATGCGAGA +
Preference number: 4 (lower is better)
Translates to: RRLCFHRAIPLHGPSKPWRRKFP*VSDNAR
Trigger: TCTCGCATTATCTGACACTCAAGGGAACTTTCTCCT...CCAAGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp GACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGAACACTGGGACCACTCTaGATAATGCCACCTTGTCAA +
Preference number: 4 (lower is better)
Translates to: DACVFTEQSPFTVLPSLGTLGPL*IMPPCQ
Trigger: TTGACAAGGTGGCATTATTCAGAGTGGTCCCAGTGT...TCCAAGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp CTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCATTCTCTCCTGGTTTGTaGGTTAATGGAACATTTCTG +
Preference number: 4 (lower is better)
Translates to: LGKPGVREEHRRLCFHRAFSPGL*VNGTFL
Trigger: CAGAAATGTTCCATTAACTCACAAACCAGGAGAGAA...TGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp GAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCATACTCCCCATCATTTaGTTTGAATGTCCCCATCAG +
Preference number: 4 (lower is better)
Translates to: ERGAPTPVFSQSNPPSRSILPII*FECPHQ
Trigger: CTGATGGGGACATTCAAAGCAAATGATGGGGAGTAT...GGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp TATCCACTCCCTCACAGGAAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCACTCCAGTCGTGTTTCTaGAGCTCTGAGAGGGCAAAG +
Preference number: 4 (lower is better)
Translates to: YPLPHRKIAPWSSEAKPPLQSCF*SSERAK
Trigger: CTTTGCCCTCTCAGAGCTCCAGAAACACGACTGGAG...TGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTTCCTGTGAGGGAGTGGATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp CACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGAAGCTTGGGGATCGTTGCCGACAGAGGCCCTaGACACAGATGTCGTTAGTT +
Preference number: 4 (lower is better)
Translates to: HTEDLCNPPLLLWKLGDRCRQRP*TQMSLV
Trigger: AACTAACGACATCTGTGTCCAGGGCCTCTGTCGGCA...ACGATCCCCAAGCTTCCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp GAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTCGAAAACAGCACCCTaGATGTTGATCTCTTTCTTC +
Preference number: 4 (lower is better)
Translates to: ERGAPTPVFSQSNPPSRSSKTAP*MLISFF
Trigger: GAAGAAAGAGATCAACATCCAGGGTGCTGTTTTCGA...GGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp CTCCCTTACTGCTCTGGAAGCTTGGGGATCGTTTTCTTGACTGACTATTTCTGTACAGCTGCCATGGCATaGCTCTCGGCTGGGAGGCTT +
Preference number: 4 (lower is better)
Translates to: LPYCSGSLGIVFLTDYFCTAAMA*LSAGRL
Trigger: AAGCCTCCCAGCCGAGAGCCATGCCATGGCAGCTGT...ACAGAAATAGTCAGTCAAGAAAACGATCCCCAAGCTTCCAGAGCAGTAAGGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp GCACCCAAAGAAAGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGGGCCTGTTCTCCACTaGTTTCCTCTGATTGACAGC +
Preference number: 4 (lower is better)
Translates to: APKERFEYGSLGKPGVREGPVLH*FPLIDS
Trigger: GCTGTCAATCAGAGGAAACCAGTGGAGAACAGGCCC...CTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCTTTCTTTGGGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp CACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGAAGCTTGGGGATCGTGGGCCTGTTCTCCACTaGTTTCCTCTGATTGACAGC +
Preference number: 4 (lower is better)
Translates to: HTEDLCNPPLLLWKLGDRGPVLH*FPLIDS
Trigger: GCTGTCAATCAGAGGAAACCAGTGGAGAACAGGCCC...ACGATCCCCAAGCTTCCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp CACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGAAGCTTGGGGATCGTCTGCATCATGCTAGGTaGCTTGGGCAGTTCACAGCT +
Preference number: 4 (lower is better)
Translates to: HTEDLCNPPLLLWKLGDRLHHAR*LGQFTA
Trigger: AGCTGTGAACTGCCCAAGCCACCTAGCATGATGCAG...ACGATCCCCAAGCTTCCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp GGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGGTATGTAATCTTCTGTaGGGAAGTGAACCCACAGTT +
Preference number: 4 (lower is better)
Translates to: GERGAPTPVFSQSNPPSRVCNLL*GSEPTV
Trigger: AACTGTGGGTTCACTTCCCCACAGAAGATTACATAC...CCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp GACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGAACTTTGGTTCCGTCTTaGGACCTGTGGATGATGACA +
Preference number: 4 (lower is better)
Translates to: DACVFTEQSPFTVLPSLGTLVPS*DLWMMT
Trigger: TGTCATCATCCACAGGTCCCAAGACGGAACCAAAGT...TCCAAGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp CACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGAAGCTTGGGGATCGTGTGTTTCTGGAGCTCTaGGAGGGCAAAGCAGTTTTC +
Preference number: 4 (lower is better)
Translates to: HTEDLCNPPLLLWKLGDRVFLEL*EGKAVF
Trigger: GAAAACTGCTTTGCCCTCTCAGAGCTCCAGAAACAC...ACGATCCCCAAGCTTCCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp AAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAGATCCAGGTCCCCAGGTATCATCCGGGACATTCTaGCTCTGTTGCCATAAGCAA +
Preference number: 4 (lower is better)
Translates to: KIAPWSSEAKPPDPGPQVSSGTF*LCCHKQ
Trigger: TTGCTTATGGCAACAGAGTCAGAATGTCCCGGATGA...TACCTGGGGACCTGGATCTGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp CTCCCTTACTGCTCTGGAAGCTTGGGGATCGTTTTCTTGACTGACTATTTCTGTACTCTCCACAAGGGCTaGAGCAGAGAGACACCGCAG +
Preference number: 4 (lower is better)
Translates to: LPYCSGSLGIVFLTDYFCTLHKG*SRETPQ
Trigger: CTGCGGTGTCTCTCTGCTTCAGCCCTTGTGGAGAGT...ACAGAAATAGTCAGTCAAGAAAACGATCCCCAAGCTTCCAGAGCAGTAAGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp AGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCACAGATCACAAATCTTaGTTTTACCCCTCCACCACA +
Preference number: 4 (lower is better)
Translates to: RFEYGSLGKPGVREEHRRTDHKS*FYPSTT
Trigger: TGTGGTGGAGGGGTAAAATCAAGATTTGTGATCTGT...GCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp GTACTGGCTAGCTTTCTCCCCATTTGGGACAGAATGTCTCGGTTTATGAGTTTAGGGCAGGCGTGCAGGTaGCACTGCATCATGCTAGGT +
Preference number: 4 (lower is better)
Translates to: VLASFLPIWDRMSRFMSLGQACR*HCIMLG
Trigger: ACCTAGCATGATGCAGTGTCACCTGCACGCCTGCCC...TAAACTCATAAACCGAGACATTCTGTCCCAAATGGGGAGAAAGCTAGCCAGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp TTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGGATCTGCAAGCTTTGTaGGTTCGAGGTTTATGCAAA +
Preference number: 4 (lower is better)
Translates to: FEYGSLGKPGVREEHRRLDLQAL*VRGLCK
Trigger: TTTGCATAAACCTCGAACTCACAAAGCTTGCAGATC...CAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp GACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGACACCAAACCTGTCGCTaGTTCATTCCTTTTCCACAT +
Preference number: 4 (lower is better)
Translates to: DACVFTEQSPFTVLPSLGHQTCR*FIPFPH
Trigger: ATGTGGAAAAGGAATGAAGCAGCGACAGGTTTGGTG...TCCAAGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp GTTTCTGTCCTGTACTTTAGACATGCCTTTCTGTCCACCAAGGTCTCAGCAAAAGGAACGTGGCTTGGCTaGTCAGAGGAGCTGGGAGCT +
Preference number: 4 (lower is better)
Translates to: VSVLYFRHAFLSTKVSAKGTWLG*SEELGA
Trigger: AGCTCCCAGCTCCTCTGAGCAGCCAAGCCACGTTCC...TTTTGCTGAGACCTTGGTGGACAGAAAGGCATGTCTAAAGTACAGGACAGAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp GGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGTTAAAACTGATCACTaGTCCTTCCTGTTCACTGTG +
Preference number: 4 (lower is better)
Translates to: GAPTPVFSQSNPPSRSFQVKTDH*SFLFTV
Trigger: CACAGTGAACAGGAAGGACCAGTGATCAGTTTTAAC...TTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp GACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGACACACTTGTCTCTCTTaGCCTTGGAGTTTAACACGT +
Preference number: 4 (lower is better)
Translates to: DACVFTEQSPFTVLPSLGHTCLS*PWSLTR
Trigger: ACGTGTTAAACTCCAAGGCCAAGAGAGACAAGTGTG...TCCAAGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp AAAGAAAGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACTTGCCACGGCCCGTATaGATCCCAGGAGAACAGATT +
Preference number: 4 (lower is better)
Translates to: KERFEYGSLGKPGVREEHLPRPV*IPGEQI
Trigger: AATCTGTTCTCCTGGGATCCATACGGGCCGTGGCAA...GTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCTTTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp AAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAGATCCAGGTCCCCAGGTAAGTGGCATCGGTAAGTaGCCACAATTGTGGTCAGAT +
Preference number: 4 (lower is better)
Translates to: KIAPWSSEAKPPDPGPQVSGIGK*PQLWSD
Trigger: ATCTGACCACAATTGTGGCCACTTACCGATGCCACT...TACCTGGGGACCTGGATCTGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp AAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAGATCCAGGTCCCCAGGTAGTACTGATCTCCTACTaGGACAGCCTGTCCTTTATG +
Preference number: 4 (lower is better)
Translates to: KIAPWSSEAKPPDPGPQVVLISY*DSLSFM
Trigger: CATAAAGGACAGGCTGTCCCAGTAGGAGATCAGTAC...TACCTGGGGACCTGGATCTGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp CACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGAAGCTTGGGGATCGTAGAAACCATCCCTCATaGGGTCTTCACTCAGCTGAC +
Preference number: 4 (lower is better)
Translates to: HTEDLCNPPLLLWKLGDRRNHPS*GLHSAD
Trigger: GTCAGCTGAGTGAAGACCCCATGAGGGATGGTTTCT...ACGATCCCCAAGCTTCCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp AGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAACATTGTTTGTAACTTaGAGTTCCTTGCAGGTGGTT +
Preference number: 4 (lower is better)
Translates to: SLGKPGVREEHRRLCFHRTLFVT*SSLQVV
Trigger: AACCACCTGCAAGGAACTCCAAGTTACAAACAATGT...TCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp CTCCCTTACTGCTCTGGAAGCTTGGGGATCGTTTTCTTGACTGACTATTTCTGTGTCCTCCACAGAGACTaGAGACAGCAGTGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: LPYCSGSLGIVFLTDYFCVLHRD*RQQCGP
Trigger: AGGACCACACTGCTGTCTTCAGTCTCTGTGGAGGAC...ACAGAAATAGTCAGTCAAGAAAACGATCCCCAAGCTTCCAGAGCAGTAAGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp ATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTCTCCATTTGATTTTCTaGAACTTCACAAGGCTTGTG +
Preference number: 4 (lower is better)
Translates to: IWKSREARGERGAPTPVFLHLIF*NFTRLV
Trigger: CACAAGCCTTGTGAAGTTTCAGAAAATCAAATGGAG...AAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp CGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGCCTTCCTGTTCACTGTaGATCACAACTAATTTCACA +
Preference number: 4 (lower is better)
Translates to: RRLCFHRAIPLHGPSKPWPSCSL*ITTNFT
Trigger: TGTGAAATTAGTTGTGATTCACAGTGAACAGGAAGG...CCAAGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp GTACTGGCTAGCTTTCTCCCCATTTGGGACAGAATGTCTCGGTTTATGAGTTTACTGGTTTCCTCTGATTaGCAGCTGGGCCCCCTGATC +
Preference number: 4 (lower is better)
Translates to: VLASFLPIWDRMSRFMSLLVSSD*QLGPLI
Trigger: GATCAGGGGGCCCAGCTGTCAATCAGAGGAAACCAG...TAAACTCATAAACCGAGACATTCTGTCCCAAATGGGGAGAAAGCTAGCCAGTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp CGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATAGTTGTCTTCACTTTTaGCCAGTGGTAAATATTCTC +
Preference number: 4 (lower is better)
Translates to: REARGERGAPTPVFSQSNSCLHF*PVVNIL
Trigger: GAGAATATTTACCACTGGTCAAAAGTGAAGACAACT...ATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp TATCCACTCCCTCACAGGAAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCACTTTTCCCAATGATGTaGCACCTGAGTTCACAGTCC +
Preference number: 4 (lower is better)
Translates to: YPLPHRKIAPWSSEAKPPLFPMM*HLSSQS
Trigger: GGACTGTGAACTCAGGTGGCACATCATTGGGAAAAG...TGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTTCCTGTGAGGGAGTGGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR GCA 90 bp AACAGTTGTGTGGTACACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGCACCACAGGTTTGTGTaGATTCTCCCCAGTCCCCAT +
Preference number: 4 (lower is better)
Translates to: NSCVVHTEDLCNPPLLLWHHRFV*ILPSPH
Trigger: ATGGGGACTGGGGAGAATGCACACAAACCTGTGGTG...CCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTGTACCACACAACTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR GCA 90 bp GCACCCAAAGAAAGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGAACCGTTCTCAGTCCTaGATGCTACTCTTCTCTCCA +
Preference number: 4 (lower is better)
Translates to: APKERFEYGSLGKPGVRENRSQS*MLLFSP
Trigger: TGGAGAGAAGAGTAGCATGCAGGACTGAGAACGGTT...CTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCTTTCTTTGGGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp AAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAGATCCAGGTCCCCAGGTATCTGTAGATCAGATGTaGCTTGTTGTGGTCATCGTC +
Preference number: 4 (lower is better)
Translates to: KIAPWSSEAKPPDPGPQVSVDQM*LVVVIV
Trigger: GACGATGACCACAACAAGCCACATCTGATCTACAGA...TACCTGGGGACCTGGATCTGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp AAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAGATCCAGGTCCCCAGGTACACACTTGTCTCTCTTaGCCTTGGAGTTTAACACGT +
Preference number: 4 (lower is better)
Translates to: KIAPWSSEAKPPDPGPQVHTCLS*PWSLTR
Trigger: ACGTGTTAAACTCCAAGGCCAAGAGAGACAAGTGTG...TACCTGGGGACCTGGATCTGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp AGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCATAGTTGTCATCTTCTaGTCTTCCAGAATAGCTGTG +
Preference number: 4 (lower is better)
Translates to: RFEYGSLGKPGVREEHRRIVVIF*SSRIAV
Trigger: CACAGCTATTCTGGAAGACCAGAAGATGACAACTAT...GCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CCA 90 bp AACAGTTGTGTGGTACACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGTTGCCACGGCCCGTATaGATCCCAGGAGAACAGATT +
Preference number: 4 (lower is better)
Translates to: NSCVVHTEDLCNPPLLLWLPRPV*IPGEQI
Trigger: AATCTGTTCTCCTGGGATCCATACGGGCCGTGGCAA...CCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTGTACCACACAACTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp GTTTCTGTCCTGTACTTTAGACATGCCTTTCTGTCCACCAAGGTCTCAGCAAAAGCTGCTCAGAGGAGCTaGGAGCTCGGCTGTATAAGG +
Preference number: 4 (lower is better)
Translates to: VSVLYFRHAFLSTKVSAKAAQRS*ELGCIR
Trigger: CCTTATACAGCCGAGCTCCCAGCTCCTCTGAGCAGC...TTTTGCTGAGACCTTGGTGGACAGAAAGGCATGTCTAAAGTACAGGACAGAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp CTCCCTTACTGCTCTGGAAGCTTGGGGATCGTTTTCTTGACTGACTATTTCTGTTTTCTGCTGGGAACGTaGCTTGGCTGCTCAGAGGAG +
Preference number: 4 (lower is better)
Translates to: LPYCSGSLGIVFLTDYFCFLLGT*LGCSEE
Trigger: CTCCTCTGAGCAGCCAAGCCACGTTCCCAGCAGAAA...ACAGAAATAGTCAGTCAAGAAAACGATCCCCAAGCTTCCAGAGCAGTAAGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp CGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGCACAGAGACTTTCATTaGCTTGTACGTTTTGCTCAT +
Preference number: 4 (lower is better)
Translates to: RRLCFHRAIPLHGPSKPWHRDFH*LVRFAH
Trigger: ATGAGCAAAACGTACAAGCCAATGAAAGTCTCTGTG...CCAAGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
3UTR CAA 72 bp CTCCCTTACTGCTCTGGAAGCTTGGGGATCGTTTTCTaGACTGACTATTTCTGTGAGGTTGAAGGGCTGCTC +
Preference number: 4 (lower is better)
Translates to: LPYCSGSLGIVF*TDYFCEVEGLL
Trigger: GAGCAGCCCTTCAACCTCACAGAAATAGTCAGTCAAGAAAACGATCCCCAAGCTTCCAGAGCAGTAAGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp CTCCCTTACTGCTCTGGAAGCTTGGGGATCGTTTTCTTGACTGACTATTTCTGTGTAGGGACACACTTGTaGTCCAGGGCCAAACATGAG +
Preference number: 4 (lower is better)
Translates to: LPYCSGSLGIVFLTDYFCVGTHL*SRAKHE
Trigger: CTCATGTTTGGCCCTGGATCACAAGTGTGTCCCTAC...ACAGAAATAGTCAGTCAAGAAAACGATCCCCAAGCTTCCAGAGCAGTAAGGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp TATCCACTCCCTCACAGGAAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAAGGAGAAAGTTCCCTTaGGTGTCAGATAATGCGAGA +
Preference number: 4 (lower is better)
Translates to: YPLPHRKIAPWSSEAKPPRRKFP*VSDNAR
Trigger: TCTCGCATTATCTGACACTCAAGGGAACTTTCTCCT...TGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTTCCTGTGAGGGAGTGGATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp AACAGTTGTGTGGTACACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGCAGCACCCTGGATGTTaGTCTCTTTCTTCGCCATAC +
Preference number: 4 (lower is better)
Translates to: NSCVVHTEDLCNPPLLLWQHPGC*SLSSPY
Trigger: GTATGGCGAAGAAAGAGATCAACATCCAGGGTGCTG...CCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTGTACCACACAACTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR GCA 90 bp CACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTGTTCACAGTCCATATTaGACTTTTCAGTCACAAACA +
Preference number: 4 (lower is better)
Translates to: HRRLCFHRAIPLHGPSKPVHSPY*TFQSQT
Trigger: TGTTTGTGACTGAAAAGTGCAATATGGACTGTGAAC...AGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp TATCCACTCCCTCACAGGAAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAAATAGCCAGGCAAGGTaGCAATATACAGTCCTGTCT +
Preference number: 4 (lower is better)
Translates to: YPLPHRKIAPWSSEAKPPNSQAR*QYTVLS
Trigger: AGACAGGACTGTATATTGGCACCTTGCCTGGCTATT...TGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTTCCTGTGAGGGAGTGGATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp GTACTGGCTAGCTTTCTCCCCATTTGGGACAGAATGTCTCGGTTTATGAGTTTAACACCTGCCAGGGTCTaGCACGAAGAGTTGTCACCA +
Preference number: 4 (lower is better)
Translates to: VLASFLPIWDRMSRFMSLTPARV*HEELSP
Trigger: TGGTGACAACTCTTCGTGCCAGACCCTGGCAGGTGT...TAAACTCATAAACCGAGACATTCTGTCCCAAATGGGGAGAAAGCTAGCCAGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp GTTTCTGTCCTGTACTTTAGACATGCCTTTCTGTCCACCAAGGTCTCAGCAAAAAAAACACAGCTGCCATaGCATGGCTCTCGGCTGGGA +
Preference number: 4 (lower is better)
Translates to: VSVLYFRHAFLSTKVSAKKTQLP*HGSRLG
Trigger: TCCCAGCCGAGAGCCATGCCATGGCAGCTGTGTTTT...TTTTGCTGAGACCTTGGTGGACAGAAAGGCATGTCTAAAGTACAGGACAGAAAC
49% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp TTTCTCCCCATTTGGGACAGAATGTCTCGGTTTATGAGTTTAGTTACAAATAGACTTCCCAGGACCCAGTaGGAAGGAGCGAGATCGGGC +
Preference number: 4 (lower is better)
Translates to: FLPIWDRMSRFMSLVTNRLPRTQ*EGARSG
Trigger: GCCCGATCTCGCTCCTTCTCACTGGGTCCTGGGAAG...TCTATTTGTAACTAAACTCATAAACCGAGACATTCTGTCCCAAATGGGGAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp CTCCCTTACTGCTCTGGAAGCTTGGGGATCGTTTTCTTGACTGACTATTTCTGTTTGGAGTTTAACACGTaGTCACAGCCAGCTTGCCGA +
Preference number: 4 (lower is better)
Translates to: LPYCSGSLGIVFLTDYFCLEFNT*SQPACR
Trigger: TCGGCAAGCTGGCTGTGATCACGTGTTAAACTCCAA...ACAGAAATAGTCAGTCAAGAAAACGATCCCCAAGCTTCCAGAGCAGTAAGGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp AACAGTTGTGTGGTACACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGTTAACAGCACGCATCTaGTATCCATGTCCACAGGTG +
Preference number: 4 (lower is better)
Translates to: NSCVVHTEDLCNPPLLLWLTARI*YPCPQV
Trigger: CACCTGTGGACATGGATATCAGATGCGTGCTGTTAA...CCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTGTACCACACAACTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp CCCAAAGAAAGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGTGGCCATTGGGAAACTaGCAGATCACAAATCTTGAT +
Preference number: 4 (lower is better)
Translates to: PKERFEYGSLGKPGVREEWPLGN*QITNLD
Trigger: ATCAAGATTTGTGATCTGTCAGTTTCCCAATGGCCA...CTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCTTTCTTTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR GCA 90 bp AACAGTTGTGTGGTACACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGATCGAAATTTCATCCTaGGGCCCACACAGTACCTTC +
Preference number: 4 (lower is better)
Translates to: NSCVVHTEDLCNPPLLLWIEISS*GPHSTF
Trigger: GAAGGTACTGTGTGGGCCGCAGGATGAAATTTCGAT...CCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTGTACCACACAACTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR GCA 90 bp GTTTCTGTCCTGTACTTTAGACATGCCTTTCTGTCCACCAAGGTCTCAGCAAAATTGTCAAAACACAGCTaGCATGGCATGGCTCTCGGC +
Preference number: 4 (lower is better)
Translates to: VSVLYFRHAFLSTKVSAKLSKHS*HGMALG
Trigger: GCCGAGAGCCATGCCATGGCAGCTGTGTTTTGACAA...TTTTGCTGAGACCTTGGTGGACAGAAAGGCATGTCTAAAGTACAGGACAGAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp AAAGAAAGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACTCTGTAGATCAGATGTaGCTTGTTGTGGTCATCGTC +
Preference number: 4 (lower is better)
Translates to: KERFEYGSLGKPGVREEHSVDQM*LVVVIV
Trigger: GACGATGACCACAACAAGCCACATCTGATCTACAGA...GTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCTTTCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR TCA 90 bp TATCCACTCCCTCACAGGAAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCACCTTCCTGTTCACTGTaGATCACAACTAATTTCACA +
Preference number: 4 (lower is better)
Translates to: YPLPHRKIAPWSSEAKPPPSCSL*ITTNFT
Trigger: TGTGAAATTAGTTGTGATTCACAGTGAACAGGAAGG...TGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTTCCTGTGAGGGAGTGGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp CTCCCTTACTGCTCTGGAAGCTTGGGGATCGTTTTCTTGACTGACTATTTCTGTTTCCTTTTCCACATGTaGCAGGACACTCACTCCACT +
Preference number: 4 (lower is better)
Translates to: LPYCSGSLGIVFLTDYFCFLFHM*QDTHST
Trigger: AGTGGAGTGAGTGTCCTGTCACATGTGGAAAAGGAA...ACAGAAATAGTCAGTCAAGAAAACGATCCCCAAGCTTCCAGAGCAGTAAGGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp TATCCACTCCCTCACAGGAAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAATAGTTGTCATCTTCTaGTCTTCCAGAATAGCTGTG +
Preference number: 4 (lower is better)
Translates to: YPLPHRKIAPWSSEAKPPIVVIF*SSRIAV
Trigger: CACAGCTATTCTGGAAGACCAGAAGATGACAACTAT...TGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTTCCTGTGAGGGAGTGGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp TTTCTCCCCATTTGGGACAGAATGTCTCGGTTTATGAGTTTAGTTACAAATAGATCCACTGGTTTCCTCTaGTTGACAGCTGGGCCCCCT +
Preference number: 4 (lower is better)
Translates to: FLPIWDRMSRFMSLVTNRSTGFL*LTAGPP
Trigger: AGGGGGCCCAGCTGTCAATCAGAGGAAACCAGTGGA...TCTATTTGTAACTAAACTCATAAACCGAGACATTCTGTCCCAAATGGGGAGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp AACAGTTGTGTGGTACACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGTGGCCATTGGGAAACTaGCAGATCACAAATCTTGAT +
Preference number: 4 (lower is better)
Translates to: NSCVVHTEDLCNPPLLLWWPLGN*QITNLD
Trigger: ATCAAGATTTGTGATCTGTCAGTTTCCCAATGGCCA...CCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTGTACCACACAACTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR CAA 72 bp AAGATCTCTGCAATCCTCCCTTACTGCTCTGGAAGCTaGGGGATCGTTTTCTTGACTGACTATTTCTGTGAG +
Preference number: 4 (lower is better)
Translates to: KISAILPYCSGS*GIVFLTDYFCE
Trigger: CTCACAGAAATAGTCAGTCAAGAAAACGATCCCCAAGCTTCCAGAGCAGTAAGGGAGGATTGCAGAGATCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR GCA 90 bp GTACTGGCTAGCTTTCTCCCCATTTGGGACAGAATGTCTCGGTTTATGAGTTTACACCAAACCTGTCGCTaGTTCATTCCTTTTCCACAT +
Preference number: 4 (lower is better)
Translates to: VLASFLPIWDRMSRFMSLHQTCR*FIPFPH
Trigger: ATGTGGAAAAGGAATGAAGCAGCGACAGGTTTGGTG...TAAACTCATAAACCGAGACATTCTGTCCCAAATGGGGAGAAAGCTAGCCAGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp TTTCTCCCCATTTGGGACAGAATGTCTCGGTTTATGAGTTTAGTTACAAATAGAGTTCGCCTTCCAATCTaGACACCGCTTCCTCTTCGA +
Preference number: 4 (lower is better)
Translates to: FLPIWDRMSRFMSLVTNRVRLPI*TPLPLR
Trigger: TCGAAGAGGAAGCGGTGTTCAGATTGGAAGGCGAAC...TCTATTTGTAACTAAACTCATAAACCGAGACATTCTGTCCCAAATGGGGAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp TTTCTCCCCATTTGGGACAGAATGTCTCGGTTTATGAGTTTAGTTACAAATAGATTGGCCACACTGGGATaGGCAGTCGCTTTTCCCAAT +
Preference number: 4 (lower is better)
Translates to: FLPIWDRMSRFMSLVTNRLATLG*AVAFPN
Trigger: ATTGGGAAAAGCGACTGCTCATCCCAGTGTGGCCAA...TCTATTTGTAACTAAACTCATAAACCGAGACATTCTGTCCCAAATGGGGAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp TTCTGTCCACCAAGGTCTCAGCAAAACCTTCTAAGAAATGGCCTGATAGTAAATACACTGGGACCACTCTaGATAATGCCACCTTGTCAA +
Preference number: 4 (lower is better)
Translates to: FCPPRSQQNLLRNGLIVNTLGPL*IMPPCQ
Trigger: TTGACAAGGTGGCATTATTCAGAGTGGTCCCAGTGT...ATTTACTATCAGGCCATTTCTTAGAAGGTTTTGCTGAGACCTTGGTGGACAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp CTCCCTTACTGCTCTGGAAGCTTGGGGATCGTTTTCTTGACTGACTATTTCTGTTTCTCTCCTGGTTTGTaGGTTAATGGAACATTTCTG +
Preference number: 4 (lower is better)
Translates to: LPYCSGSLGIVFLTDYFCFSPGL*VNGTFL
Trigger: CAGAAATGTTCCATTAACTCACAAACCAGGAGAGAA...ACAGAAATAGTCAGTCAAGAAAACGATCCCCAAGCTTCCAGAGCAGTAAGGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR GCA 90 bp GTTTCTGTCCTGTACTTTAGACATGCCTTTCTGTCCACCAAGGTCTCAGCAAAAATACTCCCCATCATTTaGTTTGAATGTCCCCATCAG +
Preference number: 4 (lower is better)
Translates to: VSVLYFRHAFLSTKVSAKILPII*FECPHQ
Trigger: CTGATGGGGACATTCAAAGCAAATGATGGGGAGTAT...TTTTGCTGAGACCTTGGTGGACAGAAAGGCATGTCTAAAGTACAGGACAGAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR GCA 90 bp AACAGTTGTGTGGTACACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGGTTCACAGTCCATATTaGACTTTTCAGTCACAAACA +
Preference number: 4 (lower is better)
Translates to: NSCVVHTEDLCNPPLLLWVHSPY*TFQSQT
Trigger: TGTTTGTGACTGAAAAGTGCAATATGGACTGTGAAC...CCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTGTACCACACAACTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CCA 90 bp TTCTGTCCACCAAGGTCTCAGCAAAACCTTCTAAGAAATGGCCTGATAGTAAATTCGAAAACAGCACCCTaGATGTTGATCTCTTTCTTC +
Preference number: 4 (lower is better)
Translates to: FCPPRSQQNLLRNGLIVNSKTAP*MLISFF
Trigger: GAAGAAAGAGATCAACATCCAGGGTGCTGTTTTCGA...ATTTACTATCAGGCCATTTCTTAGAAGGTTTTGCTGAGACCTTGGTGGACAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp TTTCTCCCCATTTGGGACAGAATGTCTCGGTTTATGAGTTTAGTTACAAATAGAACAGATCACAAATCTTaGTTTTACCCCTCCACCACA +
Preference number: 4 (lower is better)
Translates to: FLPIWDRMSRFMSLVTNRTDHKS*FYPSTT
Trigger: TGTGGTGGAGGGGTAAAATCAAGATTTGTGATCTGT...TCTATTTGTAACTAAACTCATAAACCGAGACATTCTGTCCCAAATGGGGAGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR TCA 90 bp TTTCTCCCCATTTGGGACAGAATGTCTCGGTTTATGAGTTTAGTTACAAATAGACTCCATTTGATTTTCTaGAACTTCACAAGGCTTGTG +
Preference number: 4 (lower is better)
Translates to: FLPIWDRMSRFMSLVTNRLHLIF*NFTRLV
Trigger: CACAAGCCTTGTGAAGTTTCAGAAAATCAAATGGAG...TCTATTTGTAACTAAACTCATAAACCGAGACATTCTGTCCCAAATGGGGAGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
3UTR CAA 72 bp ATACATATACATTATGCAAAGCGTAACGACAGCACATaGACACACATCGTATGTAAAGATACAGTCCATTCA +
Preference number: 4 (lower is better)
Translates to: IHIHYAKRNDST*THIVCKDTVHS
Trigger: TGAATGGACTGTATCTTTACATACGATGTGTGTCAATGTGCTGTCGTTACGCTTTGCATAATGTATATGTAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS CCA 90 bp CTCTCGCGCGTTGACCTGGCCACGGTAGAAACAGTGGCGCAGGTCTaGGGACTCCGTGCTGCGCCCGCCTGGTCCAGGTACCGGGGTCCC +
Preference number: 5 (lower is better)
Translates to: LSRVDLATVETVAQV*GLRAAPAWSRYRGP
Trigger: GGGACCCCGGTACCTGGACCAGGCGGGCGCAGCACGGAGTCCCCAGACCTGCGCCACTGTTTCTACCGTGGCCAGGTCAACGCGCGAGAG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 90 bp CCCATGGTCCCCACTCGCCATCCACAGGACGGGTCTCCATGTCCCTaGTCACACACAGCCCACGGTGGCAGTGCATCCCGGGACCACAGC +
Preference number: 5 (lower is better)
Translates to: PMVPTRHPQDGSPCP*SHTAHGGSASRDHS
Trigger: GCTGTGGTCCCGGGATGCACTGCCACCGTGGGCTGTGTGTGACCAGGGACATGGAGACCCGTCCTGTGGATGGCGAGTGGGGACCATGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 90 bp TCCCGGGACCACAGCTCGTCCCATCTGCCAGCGGCATGTGCTGTGTaGGACAGCCCTTGTGGACGCCTTCTGCACTCGTGCACCACAGAC +
Preference number: 5 (lower is better)
Translates to: SRDHSSSHLPAACAV*DSPCGRLLHSCTTD
Trigger: GTCTGTGGTGCACGAGTGCAGAAGGCGTCCACAAGGGCTGTCGCACACAGCACATGCCGCTGGCAGATGGGACGAGCTGTGGTCCCGGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 90 bp CTCGTCCCATCTGCCAGCGGCATGTGCTGTGTGCGACAGCCCTTGTaGACGCCTTCTGCACTCGTGCACCACAGACGTCGGCAGTGCTTC +
Preference number: 5 (lower is better)
Translates to: LVPSASGMCCVRQPL*TPSALVHHRRRQCF
Trigger: GAAGCACTGCCGACGTCTGTGGTGCACGAGTGCAGAAGGCGTCCACAAGGGCTGTCGCACACAGCACATGCCGCTGGCAGATGGGACGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 90 bp GCTCACATAACGGGCCTGACTGCCTCTTCCACAGGACACAGAGCATaGGGTCCACGATCCATGGCGCCACTGTGCTGCCCTTCCCAGGGG +
Preference number: 5 (lower is better)
Translates to: AHITGLTASSTGHRA*GPRSMAPLCCPSQG
Trigger: CCCCTGGGAAGGGCAGCACAGTGGCGCCATGGATCGTGGACCCCATGCTCTGTGTCCTGTGGAAGAGGCAGTCAGGCCCGTTATGTGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS TCA 90 bp CCAGGGCTTCCTGTCGTGGGTGGAAACGAACTTCCCAGGACCCAGTaGGAAGGAGCGAGATCGGGCAGAGCAACCCGGTCAGCCACTTGG +
Preference number: 5 (lower is better)
Translates to: PGLPVVGGNELPRTQ*EGARSGRATRSATW
Trigger: CCAAGTGGCTGACCGGGTTGCTCTGCCCGATCTCGCTCCTTCTCACTGGGTCCTGGGAAGTTCGTTTCCACCCACGACAGGAAGCCCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 90 bp GGAGGAGGCTCCGGCACCCCGGAGCTACGTTTCTTCCGGCTGAAATaGCGGTTCTGGGGAAACACGTCTCCGAACTCATTGACCCGCGTG +
Preference number: 5 (lower is better)
Translates to: GGGSGTPELRFFRLK*RFWGNTSPNSLTRV
Trigger: CACGCGGGTCAATGAGTTCGGAGACGTGTTTCCCCAGAACCGGCATTTCAGCCGGAAGAAACGTAGCTCCGGGGTGCCGGAGCCTCCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 90 bp TCCGGCACCCCGGAGCTACGTTTCTTCCGGCTGAAATGCCGGTTCTaGGGAAACACGTCTCCGAACTCATTGACCCGCGTGGGGGTCACC +
Preference number: 5 (lower is better)
Translates to: SGTPELRFFRLKCRF*GNTSPNSLTRVGVT
Trigger: GGTGACCCCCACGCGGGTCAATGAGTTCGGAGACGTGTTTCCCCAGAACCGGCATTTCAGCCGGAAGAAACGTAGCTCCGGGGTGCCGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp GGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGAGTCCTGTCTGTCACTaGGCCGGCTGGCTTGCGGGC +
Preference number: 5 (lower is better)
Translates to: GERGAPTPVFSQSNPPSRSPVCH*AGWLAG
Trigger: GCCCGCAAGCCAGCCGGCCAAGTGACAGACAGGACT...CCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS TCA 90 bp GTCACAGAGCCGGGCTGTGCTCTTGATTCCACCTCCGCATGTCCTTaGACACGAGCTGTAGGGTCCCCATGGTCCCCACTCGCCATCCAC +
Preference number: 5 (lower is better)
Translates to: VTEPGCALDSTSACP*TRAVGSPWSPLAIH
Trigger: GTGGATGGCGAGTGGGGACCATGGGGACCCTACAGCTCGTGTTCAAGGACATGCGGAGGTGGAATCAAGAGCACAGCCCGGCTCTGTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 90 bp GAGGCCGGGTGGATGGATCACACATGTCTTCAGACACTCGACCAGTaGCTCTCAGCCTGCAGTACACCTCCCTCTGCTGCACCCCTGACC +
Preference number: 5 (lower is better)
Translates to: EAGWMDHTCLQTLDQ*LSACSTPPSAAPLT
Trigger: GGTCAGGGGTGCAGCAGAGGGAGGTGTACTGCAGGCTGAGAGGCACTGGTCGAGTGTCTGAAGACATGTGTGATCCATCCACCCGGCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp CGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATTGCTGGGAACGTGGCTaGGCTGCTCAGAGGAGCTGG +
Preference number: 5 (lower is better)
Translates to: REARGERGAPTPVFSQSNCWERG*AAQRSW
Trigger: CCAGCTCCTCTGAGCAGCCAAGCCACGTTCCCAGCA...ATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp CACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTCGGAGCCACAGTGCCTaGACTCTGGGGGCTTGGAGG +
Preference number: 5 (lower is better)
Translates to: HRRLCFHRAIPLHGPSKPRSHSA*TLGAWR
Trigger: CCTCCAAGCCCCCAGAGTCAAGGCACTGTGGCTCCG...AGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS TCA 90 bp GTCCCCATAATTCCAGTGCGGACAAGGTCCGGAGCCACAGTGCCTTaGCTCTGGGGGCTTGGAGGACCCATCACAGGAAGTAGCGCTTCG +
Preference number: 5 (lower is better)
Translates to: VPIIPVRTRSGATVP*LWGLGGPITGSSAS
Trigger: CGAAGCGCTACTTCCTGTGATGGGTCCTCCAAGCCCCCAGAGTCAAGGCACTGTGGCTCCGGACCTTGTCCGCACTGGAATTATGGGGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 90 bp TCGAAATTTCATCCTGCGGCCCACACAGTACCTTCCTCCGTTTCGTaGCTCGGGCCGGTCACAGAGCCGGGCTGTGCTCTTGATTCCACC +
Preference number: 5 (lower is better)
Translates to: SKFHPAAHTVPSSVS*LGPVTEPGCALDST
Trigger: GGTGGAATCAAGAGCACAGCCCGGCTCTGTGACCGGCCCGAGCCACGAAACGGAGGAAGGTACTGTGTGGGCCGCAGGATGAAATTTCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp ATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTGTGATCACAGCCAGCTaGCCGACAGAGGCCCTGGAC +
Preference number: 5 (lower is better)
Translates to: IWKSREARGERGAPTPVFVITAS*PTEALD
Trigger: GTCCAGGGCCTCTGTCGGCAAGCTGGCTGTGATCAC...AAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp ATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTACTTGGCCGGCTGGCTaGCGGGCACTCTCTGTCATC +
Preference number: 5 (lower is better)
Translates to: IWKSREARGERGAPTPVFTWPAG*RALSVI
Trigger: GATGACAGAGAGTGCCCGCAAGCCAGCCGGCCAAGT...AAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS GCA 90 bp CCACTTCATCATGAGCATCCCGGCAGCTCACATAACGGGCCTGACTaGCTCTTCCACAGGACACAGAGCATGGGGTCCACGATCCATGGC +
Preference number: 5 (lower is better)
Translates to: PLHHEHPGSSHNGPD*LFHRTQSMGSTIHG
Trigger: GCCATGGATCGTGGACCCCATGCTCTGTGTCCTGTGGAAGAGGCAGTCAGGCCCGTTATGTGAGCTGCCGGGATGCTCATGATGAAGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp GGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACTGCCAGGCTACATTCTaGTTCAGTCACAGGACGGCC +
Preference number: 5 (lower is better)
Translates to: GSLGKPGVREEHRRLCFHCQATF*FSHRTA
Trigger: GGCCGTCCTGTGACTGAACAAGAATGTAGCCTGGCA...GTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp GGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGCTTGACTCTGGGGGCTaGGAGGACCCATCACAGGAA +
Preference number: 5 (lower is better)
Translates to: GERGAPTPVFSQSNPPSRLDSGG*EDPSQE
Trigger: TTCCTGTGATGGGTCCTCCAAGCCCCCAGAGTCAAG...CCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS TCA 90 bp CATGGTCCCCGATACCAGGACACATCTTCAGGGCAGGCGTGCAGGTaGCACTGCATCATGCTAGGTGGCTTGGGCAGTTCACAGCTGTGT +
Preference number: 5 (lower is better)
Translates to: HGPRYQDTSSGQACR*HCIMLGGLGSSQLC
Trigger: ACACAGCTGTGAACTGCCCAAGCCACCTAGCATGATGCAGTGTCACCTGCACGCCTGCCCTGAAGATGTGTCCTGGTATCGGGGACCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 90 bp ACTCACTCCACTCACTCGTTGCCCAGCTGGGACACGGAAATTCATTaGAGTTCTCCAGCACCACCCGCGGAAGCTCCCGACACTCGCTTT +
Preference number: 5 (lower is better)
Translates to: THSTHSLPSWDTEIH*SSPAPPAEAPDTRF
Trigger: AAAGCGAGTGTCGGGAGCTTCCGCGGGTGGTGCTGGAGAACTGCAATGAATTTCCGTGTCCCAGCTGGGCAACGAGTGAGTGGAGTGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 90 bp TCAGACACTCGACCAGTGCCTCTCAGCCTGCAGTACACCTCCCTCTaGTGCACCCCTGACCCACAGGTCACAGAGCACTCCTTCCATTTA +
Preference number: 5 (lower is better)
Translates to: SDTRPVPLSLQYTSL*CTPDPQVTEHSFHL
Trigger: TAAATGGAAGGAGTGCTCTGTGACCTGTGGGTCAGGGGTGCAGCAGAGGGAGGTGTACTGCAGGCTGAGAGGCACTGGTCGAGTGTCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS GCA 90 bp ATGGATCACACATGTCTTCAGACACTCGACCAGTGCCTCTCAGCCTaGAGTACACCTCCCTCTGCTGCACCCCTGACCCACAGGTCACAG +
Preference number: 5 (lower is better)
Translates to: MDHTCLQTLDQCLSA*STPPSAAPLTHRSQ
Trigger: CTGTGACCTGTGGGTCAGGGGTGCAGCAGAGGGAGGTGTACTGCAGGCTGAGAGGCACTGGTCGAGTGTCTGAAGACATGTGTGATCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS CCA 90 bp CACCACTTCGTAGGAGGCCAGAGTCTTCACCAGGGCTTCCTGTCGTaGGTGGAAACGAACTTCCCAGGACCCAGTGAGAAGGAGCGAGAT +
Preference number: 5 (lower is better)
Translates to: HHFVGGQSLHQGFLS*VETNFPGPSEKERD
Trigger: ATCTCGCTCCTTCTCACTGGGTCCTGGGAAGTTCGTTTCCACCCACGACAGGAAGCCCTGGTGAAGACTCTGGCCTCCTACGAAGTGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp AAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAGATCCAGGTCCCCAGGTAACTTGGCCGGCTGGCTaGCGGGCACTCTCTGTCATC +
Preference number: 5 (lower is better)
Translates to: KIAPWSSEAKPPDPGPQVTWPAG*RALSVI
Trigger: GATGACAGAGAGTGCCCGCAAGCCAGCCGGCCAAGT...TACCTGGGGACCTGGATCTGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp TATCCACTCCCTCACAGGAAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAAGTCCTGTCTGTCACTaGGCCGGCTGGCTTGCGGGC +
Preference number: 5 (lower is better)
Translates to: YPLPHRKIAPWSSEAKPPSPVCH*AGWLAG
Trigger: GCCCGCAAGCCAGCCGGCCAAGTGACAGACAGGACT...TGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTTCCTGTGAGGGAGTGGATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp TATCCACTCCCTCACAGGAAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCACGGAGCCACAGTGCCTaGACTCTGGGGGCTTGGAGG +
Preference number: 5 (lower is better)
Translates to: YPLPHRKIAPWSSEAKPPRSHSA*TLGAWR
Trigger: CCTCCAAGCCCCCAGAGTCAAGGCACTGTGGCTCCG...TGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTTCCTGTGAGGGAGTGGATA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS TCA 90 bp GGCAGTGCTTCAAGTAGGGACACACTTGTGATCCAGGGCCAAACATaGGCTCACACTGCCTGTTCCCATCGTACACGGAGCCCGGAAGCT +
Preference number: 5 (lower is better)
Translates to: GSASSRDTLVIQGQT*AHTACSHRTRSPEA
Trigger: AGCTTCCGGGCTCCGTGTACGATGGGAACAGGCAGTGTGAGCTCATGTTTGGCCCTGGATCACAAGTGTGTCCCTACTTGAAGCACTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp AGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCCACACACTCCACACTaGTCTCTCTTGGCCTTGGAG +
Preference number: 5 (lower is better)
Translates to: RFEYGSLGKPGVREEHRRPHTPH*SLLALE
Trigger: CTCCAAGGCCAAGAGAGACAAGTGTGGAGTGTGTGG...GCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS TCA 90 bp CGTGCACCACAGACGTCGGCAGTGCTTCAAGTAGGGACACACTTGTaGTCCAGGGCCAAACATGAGCTCACACTGCCTGTTCCCATCGTA +
Preference number: 5 (lower is better)
Translates to: RAPQTSAVLQVGTHL*SRAKHELTLPVPIV
Trigger: TACGATGGGAACAGGCAGTGTGAGCTCATGTTTGGCCCTGGATCACAAGTGTGTCCCTACTTGAAGCACTGCCGACGTCTGTGGTGCACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS TCA 90 bp CCACACACTCCACACTTGTCTCTCTTGGCCTTGGAGTTTAACACGTaGTCACAGCCAGCTTGCCGACAGAGGCCCTGGACACAGATGTCG +
Preference number: 5 (lower is better)
Translates to: PHTPHLSLLALEFNT*SQPACRQRPWTQMS
Trigger: CGACATCTGTGTCCAGGGCCTCTGTCGGCAAGCTGGCTGTGATCACGTGTTAAACTCCAAGGCCAAGAGAGACAAGTGTGGAGTGTGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 90 bp GAGCTCACACTGCCTGTTCCCATCGTACACGGAGCCCGGAAGCTGTaGAGACAGGTCATATGTTCTCCCGTTGGGTTTGTCAAGAAGGCA +
Preference number: 5 (lower is better)
Translates to: ELTLPVPIVHGARKL*RQVICSPVGFVKKA
Trigger: TGCCTTCTTGACAAACCCAACGGGAGAACATATGACCTGTCTCCACAGCTTCCGGGCTCCGTGTACGATGGGAACAGGCAGTGTGAGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp CGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCACACTTGTCTCTCTaGGCCTTGGAGTTTAACACG +
Preference number: 5 (lower is better)
Translates to: REARGERGAPTPVFSQSNPHLSL*ALEFNT
Trigger: CGTGTTAAACTCCAAGGCCAAGAGAGACAAGTGTGG...ATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp GACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGAGTCTGGCACGAAGAGTaGTCACCACCACACACTCCA +
Preference number: 5 (lower is better)
Translates to: DACVFTEQSPFTVLPSLGVWHEE*SPPHTP
Trigger: TGGAGTGTGTGGTGGTGACAACTCTTCGTGCCAGAC...TCCAAGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp TTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGAGACCTTGGCACATTTaGGTACAGTCTTGCCACGGC +
Preference number: 5 (lower is better)
Translates to: FEYGSLGKPGVREEHRRLRPWHI*VQSCHG
Trigger: GCCGTGGCAAGACTGTACCAAAATGTGCCAAGGTCT...CAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp GCACCCAAAGAAAGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGCACTCCACTCACTCGTaGCCCAGCTGGGACACGGAA +
Preference number: 5 (lower is better)
Translates to: APKERFEYGSLGKPGVREHSTHS*PSWDTE
Trigger: TTCCGTGTCCCAGCTGGGCAACGAGTGAGTGGAGTG...CTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCTTTCTTTGGGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp GGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACGTGTTCCTGTGTCATTaGGCCATTGGGAAACTGACA +
Preference number: 5 (lower is better)
Translates to: GSLGKPGVREEHRRLCFHVFLCH*AIGKLT
Trigger: TGTCAGTTTCCCAATGGCCAAATGACACAGGAACAC...GTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS CCA 90 bp CCAGGCAAGGTGCCAATATACAGTCCTGTCTGTCACTTGGCCGGCTaGCTTGCGGGCACTCTCTGTCATCTAGCATGGTGCCAAATATCT +
Preference number: 5 (lower is better)
Translates to: PGKVPIYSPVCHLAG*LAGTLCHLAWCQIS
Trigger: AGATATTTGGCACCATGCTAGATGACAGAGAGTGCCCGCAAGCCAGCCGGCCAAGTGACAGACAGGACTGTATATTGGCACCTTGCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 90 bp CACATCTTCAGGGCAGGCGTGCAGGTGACACTGCATCATGCTAGGTaGCTTGGGCAGTTCACAGCTGTGTTCCTGTGTCATTTGGCCATT +
Preference number: 5 (lower is better)
Translates to: HIFRAGVQVTLHHAR*LGQFTAVFLCHLAI
Trigger: AATGGCCAAATGACACAGGAACACAGCTGTGAACTGCCCAAGCCACCTAGCATGATGCAGTGTCACCTGCACGCCTGCCCTGAAGATGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp TTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGATCAGATGTGGCTTGTaGTGGTCATCGTCATGCGCA +
Preference number: 5 (lower is better)
Translates to: FEYGSLGKPGVREEHRRLIRCGL*WSSSCA
Trigger: TGCGCATGACGATGACCACAACAAGCCACATCTGAT...CAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp AAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAGATCCAGGTCCCCAGGTAGTCTGGCACGAAGAGTaGTCACCACCACACACTCCA +
Preference number: 5 (lower is better)
Translates to: KIAPWSSEAKPPDPGPQVVWHEE*SPPHTP
Trigger: TGGAGTGTGTGGTGGTGACAACTCTTCGTGCCAGAC...TACCTGGGGACCTGGATCTGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp CTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCACTGAATAATGCCACCTaGTCAAAACACAGCTGCCAT +
Preference number: 5 (lower is better)
Translates to: LGKPGVREEHRRLCFHRALNNAT*SKHSCH
Trigger: ATGGCAGCTGTGTTTTGACAAGGTGGCATTATTCAG...TGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp CTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAAGCCACTTTGCTGTGTaGGATATCTTCATCCCAGTT +
Preference number: 5 (lower is better)
Translates to: LGKPGVREEHRRLCFHRASHFAV*DIFIPV
Trigger: AACTGGGATGAAGATATCCAACACAGCAAAGTGGCT...TGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp CGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGACGCCTGAGCGAGCCACTTaGCTGTGTTGGATATCTTCA +
Preference number: 5 (lower is better)
Translates to: RLCFHRAIPLHGPSKPWTPERAT*LCWISS
Trigger: TGAAGATATCCAACACAGCAAAGTGGCTCGCTCAGG...CGTCCAAGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS TCA 90 bp GTTCCGTCTTGGGACCTGTGGATGATGACAGAGGCATACCTCCCCTaGGCGAGCCACTTTGCTGTGTTGGATATCTTCATCCCAGTTCCT +
Preference number: 5 (lower is better)
Translates to: VPSWDLWMMTEAYLP*ASHFAVLDIFIPVP
Trigger: AGGAACTGGGATGAAGATATCCAACACAGCAAAGTGGCTCGCTCAGGGGAGGTATGCCTCTGTCATCATCCACAGGTCCCAAGACGGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS GCA 90 bp CAAGGTGCCAATATACAGTCCTGTCTGTCACTTGGCCGGCTGGCTTaGGGGCACTCTCTGTCATCTAGCATGGTGCCAAATATCTCACTG +
Preference number: 5 (lower is better)
Translates to: QGANIQSCLSLGRLA*GHSLSSSMVPNISL
Trigger: CAGTGAGATATTTGGCACCATGCTAGATGACAGAGAGTGCCCGCAAGCCAGCCGGCCAAGTGACAGACAGGACTGTATATTGGCACCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 90 bp CCTGATCTTGATTCTCTCCTGGTTTGTGAGTTAATGGAACATTTCTaGTGGGAACGTGGCTTGGCTGCTCAGAGGAGCTGGGAGCTCGGC +
Preference number: 5 (lower is better)
Translates to: PDLDSLLVCELMEHF*WERGLAAQRSWELG
Trigger: GCCGAGCTCCCAGCTCCTCTGAGCAGCCAAGCCACGTTCCCAGCAGAAATGTTCCATTAACTCACAAACCAGGAGAGAATCAAGATCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 90 bp TCGGCTGGGAGGCTTGAGCTGGTCACCACAGTACTGATCTCCTACTaGGACAGCCTGTCCTTTATGAACCGAGTACTTCATGCAGTGAAC +
Preference number: 5 (lower is better)
Translates to: SAGRLELVTTVLISY*DSLSFMNRVLHAVN
Trigger: GTTCACTGCATGAAGTACTCGGTTCATAAAGGACAGGCTGTCCCAGTAGGAGATCAGTACTGTGGTGACCAGCTCAAGCCTCCCAGCCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 90 bp TCAGCGACTCGGGCTTGGTACTGGCATTACAGAAACCATCCCTCATaGGGTCTTCACTCAGCTGACACCAAACCTGTCGCTGCTTCATTC +
Preference number: 5 (lower is better)
Translates to: SATRAWYWHYRNHPS*GLHSADTKPVAASF
Trigger: GAATGAAGCAGCGACAGGTTTGGTGTCAGCTGAGTGAAGACCCCATGAGGGATGGTTTCTGTAATGCCAGTACCAAGCCCGAGTCGCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp GGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAATCTCGGAAGTCTCGCTaGCCTTTTGGACATGAATCA +
Preference number: 5 (lower is better)
Translates to: GAPTPVFSQSNPPSRSFQSRKSR*PFGHES
Trigger: TGATTCATGTCCAAAAGGCAAGCGAGACTTCCGAGA...TTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp CACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTACAGCACCCTGGATGTaGATCTCTTTCTTCGCCATA +
Preference number: 5 (lower is better)
Translates to: HRRLCFHRAIPLHGPSKPTAPWM*ISFFAI
Trigger: TATGGCGAAGAAAGAGATCAACATCCAGGGTGCTGT...AGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp GCACCCAAAGAAAGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGTCCCAGGAGAACAGATaGCTCCTCTCCTCAATGGGG +
Preference number: 5 (lower is better)
Translates to: APKERFEYGSLGKPGVRESQENR*LLSSMG
Trigger: CCCCATTGAGGAGAGGAGCAATCTGTTCTCCTGGGA...CTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCTTTCTTTGGGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp CTCCCTTACTGCTCTGGAAGCTTGGGGATCGTTTTCTTGACTGACTATTTCTGTTGCTGGGAACGTGGCTaGGCTGCTCAGAGGAGCTGG +
Preference number: 5 (lower is better)
Translates to: LPYCSGSLGIVFLTDYFCCWERG*AAQRSW
Trigger: CCAGCTCCTCTGAGCAGCCAAGCCACGTTCCCAGCA...ACAGAAATAGTCAGTCAAGAAAACGATCCCCAAGCTTCCAGAGCAGTAAGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp GAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCGACAGATCACAAATCTaGATTTTACCCCTCCACCAC +
Preference number: 5 (lower is better)
Translates to: EEHRRLCFHRAIPLHGPSDRSQI*ILPLHH
Trigger: GTGGTGGAGGGGTAAAATCAAGATTTGTGATCTGTC...GGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp CGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATAGATCCACTCTCACTTaGCTAAAAACAGTGTACCCG +
Preference number: 5 (lower is better)
Translates to: REARGERGAPTPVFSQSNRSTLT*LKTVYP
Trigger: CGGGTACACTGTTTTTAGCAAAGTGAGAGTGGATCT...ATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp AACAGTTGTGTGGTACACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGCTTGACTCTGGGGGCTaGGAGGACCCATCACAGGAA +
Preference number: 5 (lower is better)
Translates to: NSCVVHTEDLCNPPLLLWLDSGG*EDPSQE
Trigger: TTCCTGTGATGGGTCCTCCAAGCCCCCAGAGTCAAG...CCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTGTACCACACAACTGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp GACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGACACTCCTTCCATTTATaGGCCTTCCATGAAGGGCAT +
Preference number: 5 (lower is better)
Translates to: DACVFTEQSPFTVLPSLGHSFHL*AFHEGH
Trigger: ATGCCCTTCATGGAAGGCCAATAAATGGAAGGAGTG...TCCAAGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp GAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCTCACAGAGACTTTCATaGGCTTGTACGTTTTGCTCA +
Preference number: 5 (lower is better)
Translates to: EEHRRLCFHRAIPLHGPSSQRLS*ACTFCS
Trigger: TGAGCAAAACGTACAAGCCAATGAAAGTCTCTGTGA...GGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp CGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAGCCTTGGACGGGGTTCCTGCATTTTTaGATTGAAAGCGGCTTCGTT +
Preference number: 5 (lower is better)
Translates to: RLCFHRAIPLHGPSKPWTGFLHF*IESGFV
Trigger: AACGAAGCCGCTTTCAATCAAAAAATGCAGGAACCC...CGTCCAAGGCTTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp GGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAACAAGTTACTGAGCACTaGCTCCATTTTCCCACTTTC +
Preference number: 5 (lower is better)
Translates to: GAPTPVFSQSNPPSRSFQQVTEH*LHFPTF
Trigger: GAAAGTGGGAAAATGGAGCAAGTGCTCAGTAACTTG...TTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp GAGAGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCATCTGCAGTTTTGATTaGCATGGATTCGAGATCCAC +
Preference number: 5 (lower is better)
Translates to: ERGAPTPVFSQSNPPSRSICSFD*HGFEIH
Trigger: GTGGATCTCGAATCCATGCAAATCAAAACTGCAGAT...GGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp CCCAAAGAAAGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCCAGTTCCTGCTAAGTaGATGCTGAACTGCCCCTGT +
Preference number: 5 (lower is better)
Translates to: PKERFEYGSLGKPGVREEPVPAK*MLNCPC
Trigger: ACAGGGGCAGTTCAGCATCAACTTAGCAGGAACTGG...CTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCTTTCTTTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS GCA 90 bp TGCCTTTTGGACATGAATCAGTATTACATGATCGAAATTTCATCCTaGGGCCCACACAGTACCTTCCTCCGTTTCGTGGCTCGGGCCGGT +
Preference number: 5 (lower is better)
Translates to: CLLDMNQYYMIEISS*GPHSTFLRFVARAG
Trigger: ACCGGCCCGAGCCACGAAACGGAGGAAGGTACTGTGTGGGCCGCAGGATGAAATTTCGATCATGTAATACTGATTCATGTCCAAAAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 90 bp CTTTACAACCACATTGTAACCGTAATGGGCACTGTTGAAGACACCTaGCAGGGTCTGGCACGAAGAGTTGTCACCACCACACACTCCACA +
Preference number: 5 (lower is better)
Translates to: LYNHIVTVMGTVEDT*QGLARRVVTTTHST
Trigger: TGTGGAGTGTGTGGTGGTGACAACTCTTCGTGCCAGACCCTGGCAGGTGTCTTCAACAGTGCCCATTACGGTTACAATGTGGTTGTAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 90 bp ATGAAGACCTTGGCACATTTTGGTACAGTCTTGCCACGGCCCGTATaGATCCCAGGAGAACAGATTGCTCCTCTCCTCAATGGGGATGTT +
Preference number: 5 (lower is better)
Translates to: MKTLAHFGTVLPRPV*IPGEQIAPLLNGDV
Trigger: AACATCCCCATTGAGGAGAGGAGCAATCTGTTCTCCTGGGATCCATACGGGCCGTGGCAAGACTGTACCAAAATGTGCCAAGGTCTTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp ATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACCGACGCCTGTGTTTAGTCTCGCTTGCCTTTaGGACATGAATCAGTATTAC +
Preference number: 5 (lower is better)
Translates to: IWKSREARGERGAPTPVFSLACL*DMNQYY
Trigger: GTAATACTGATTCATGTCCAAAAGGCAAGCGAGACT...AAACACAGGCGTCGGTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp CACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGAAGCTTGGGGATCGTCCACACTTGTCTCTCTaGGCCTTGGAGTTTAACACG +
Preference number: 5 (lower is better)
Translates to: HTEDLCNPPLLLWKLGDRPHLSL*ALEFNT
Trigger: CGTGTTAAACTCCAAGGCCAAGAGAGACAAGTGTGG...ACGATCCCCAAGCTTCCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp AACAGTTGTGTGGTACACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGCCACACACTCCACACTaGTCTCTCTTGGCCTTGGAG +
Preference number: 5 (lower is better)
Translates to: NSCVVHTEDLCNPPLLLWPHTPH*SLLALE
Trigger: CTCCAAGGCCAAGAGAGACAAGTGTGGAGTGTGTGG...CCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTGTACCACACAACTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp GTTTCTGTCCTGTACTTTAGACATGCCTTTCTGTCCACCAAGGTCTCAGCAAAACACTCCACTCACTCGTaGCCCAGCTGGGACACGGAA +
Preference number: 5 (lower is better)
Translates to: VSVLYFRHAFLSTKVSAKHSTHS*PSWDTE
Trigger: TTCCGTGTCCCAGCTGGGCAACGAGTGAGTGGAGTG...TTTTGCTGAGACCTTGGTGGACAGAAAGGCATGTCTAAAGTACAGGACAGAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp AGAGGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCCATCCTTGGTAACATaGTTTGTAACTTGGAGTTCC +
Preference number: 5 (lower is better)
Translates to: RGAPTPVFSQSNPPSRSFPSLVT*FVTWSS
Trigger: GGAACTCCAAGTTACAAACAATGTTACCAAGGATGG...GAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCCTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS CCA 90 bp ACACGGAGCCCGGAAGCTGTGGAGACAGGTCATATGTTCTCCCGTTaGGTTTGTCAAGAAGGCATTCTCCATGACCAGTGTCTAGAAATT +
Preference number: 5 (lower is better)
Translates to: TRSPEAVETGHMFSR*VCQEGILHDQCLEI
Trigger: AATTTCTAGACACTGGTCATGGAGAATGCCTTCTTGACAAACCCAACGGGAGAACATATGACCTGTCTCCACAGCTTCCGGGCTCCGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp GCACCCAAAGAAAGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGTCCCCATCATTTGCTTaGAATGTCCCCATCAGTCCT +
Preference number: 5 (lower is better)
Translates to: APKERFEYGSLGKPGVRESPSFA*NVPISP
Trigger: AGGACTGATGGGGACATTCAAAGCAAATGATGGGGA...CTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCTTTCTTTGGGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp TTCTGTCCACCAAGGTCTCAGCAAAACCTTCTAAGAAATGGCCTGATAGTAAATGTGATCACAGCCAGCTaGCCGACAGAGGCCCTGGAC +
Preference number: 5 (lower is better)
Translates to: FCPPRSQQNLLRNGLIVNVITAS*PTEALD
Trigger: GTCCAGGGCCTCTGTCGGCAAGCTGGCTGTGATCAC...ATTTACTATCAGGCCATTTCTTAGAAGGTTTTGCTGAGACCTTGGTGGACAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp GGAGCACCGACGCCTGTGTTTTCACAGAGCAATCCCCCTTCACGGTCCTTCCAAAGTTCACAGTCCATATaGCACTTTTCAGTCACAAAC +
Preference number: 5 (lower is better)
Translates to: GAPTPVFSQSNPPSRSFQSSQSI*HFSVTN
Trigger: GTTTGTGACTGAAAAGTGCAATATGGACTGTGAACT...TTGGAAGGACCGTGAAGGGGGATTGCTCTGTGAAAACACAGGCGTCGGTGCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp AAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAGATCCAGGTCCCCAGGTACTGAATAATGCCACCTaGTCAAAACACAGCTGCCAT +
Preference number: 5 (lower is better)
Translates to: KIAPWSSEAKPPDPGPQVLNNAT*SKHSCH
Trigger: ATGGCAGCTGTGTTTTGACAAGGTGGCATTATTCAG...TACCTGGGGACCTGGATCTGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp TATCCACTCCCTCACAGGAAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAGTGTTCCTGTGTCATTaGGCCATTGGGAAACTGACA +
Preference number: 5 (lower is better)
Translates to: YPLPHRKIAPWSSEAKPPVFLCH*AIGKLT
Trigger: TGTCAGTTTCCCAATGGCCAAATGACACAGGAACAC...TGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTTCCTGTGAGGGAGTGGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS TCA 90 bp CGCCTCCAGCCGGTCCGTGCTGTTAATTCTTTCAATCGAGTTGTTTaGCCCGCTGTATTCGAAAACAGCACCCTGGATGTTGATCTCTTT +
Preference number: 5 (lower is better)
Translates to: RLQPVRAVNSFNRVV*PAVFENSTLDVDLF
Trigger: AAAGAGATCAACATCCAGGGTGCTGTTTTCGAATACAGCGGGTCAAACAACTCGATTGAAAGAATTAACAGCACGGACCGGCTGGAGGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS TCA 90 bp ACAACTGCATGGTCGCTCTTACGGACGCAGGCAATTTTTCTTCTATaGAGACCTTGGCACATTTTGGTACAGTCTTGCCACGGCCCGTAT +
Preference number: 5 (lower is better)
Translates to: TTAWSLLRTQAIFLL*RPWHILVQSCHGPY
Trigger: ATACGGGCCGTGGCAAGACTGTACCAAAATGTGCCAAGGTCTTCATAGAAGAAAAATTGCCTGCGTCCGTAAGAGCGACCATGCAGTTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS TCA 90 bp GTACTGGCATTACAGAAACCATCCCTCATGGGGTCTTCACTCAGCTaGCACCAAACCTGTCGCTGCTTCATTCCTTTTCCACATGTGACA +
Preference number: 5 (lower is better)
Translates to: VLALQKPSLMGSSLS*HQTCRCFIPFPHVT
Trigger: TGTCACATGTGGAAAAGGAATGAAGCAGCGACAGGTTTGGTGTCAGCTGAGTGAAGACCCCATGAGGGATGGTTTCTGTAATGCCAGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 90 bp TACGGACGCAGGCAATTTTTCTTCTATGAAGACCTTGGCACATTTTaGTACAGTCTTGCCACGGCCCGTATGGATCCCAGGAGAACAGAT +
Preference number: 5 (lower is better)
Translates to: YGRRQFFFYEDLGTF*YSLATARMDPRRTD
Trigger: ATCTGTTCTCCTGGGATCCATACGGGCCGTGGCAAGACTGTACCAAAATGTGCCAAGGTCTTCATAGAAGAAAAATTGCCTGCGTCCGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp TATCCACTCCCTCACAGGAAAATAGCACCATGGAGCTCAGAAGCAAAGCCGCCAGACAGATCACAAATCTaGATTTTACCCCTCCACCAC +
Preference number: 5 (lower is better)
Translates to: YPLPHRKIAPWSSEAKPPDRSQI*ILPLHH
Trigger: GTGGTGGAGGGGTAAAATCAAGATTTGTGATCTGTC...TGGCGGCTTTGCTTCTGAGCTCCATGGTGCTATTTTCCTGTGAGGGAGTGGATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS TCA 90 bp ATGGATCCCAGGAGAACAGATTGCTCCTCTCCTCAATGGGGATGTTaGAGGAATAGCGCACGTCAGGGTTGTATAAATTACCCACACACA +
Preference number: 5 (lower is better)
Translates to: MDPRRTDCSSPQWGC*RNSARQGCINYPHT
Trigger: TGTGTGTGGGTAATTTATACAACCCTGACGTGCGCTATTCCTTCAACATCCCCATTGAGGAGAGGAGCAATCTGTTCTCCTGGGATCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 90 bp TATCCTTGGCCACACTGGGATGAGCAGTCGCTTTTCCCAATGATGTaGCACCTGAGTTCACAGTCCATATTGCACTTTTCAGTCACAAAC +
Preference number: 5 (lower is better)
Translates to: YPWPHWDEQSLFPMM*HLSSQSILHFSVTN
Trigger: GTTTGTGACTGAAAAGTGCAATATGGACTGTGAACTCAGGTGGCACATCATTGGGAAAAGCGACTGCTCATCCCAGTGTGGCCAAGGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp AACAGTTGTGTGGTACACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGTCCCCATCATTTGCTTaGAATGTCCCCATCAGTCCT +
Preference number: 5 (lower is better)
Translates to: NSCVVHTEDLCNPPLLLWSPSFA*NVPISP
Trigger: AGGACTGATGGGGACATTCAAAGCAAATGATGGGGA...CCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTGTACCACACAACTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp AACAGTTGTGTGGTACACACTGAAGATCTCTGCAATCCTCCCTTACTGCTCTGGACAGCACCCTGGATGTaGATCTCTTTCTTCGCCATA +
Preference number: 5 (lower is better)
Translates to: NSCVVHTEDLCNPPLLLWTAPWM*ISFFAI
Trigger: TATGGCGAAGAAAGAGATCAACATCCAGGGTGCTGT...CCAGAGCAGTAAGGGAGGATTGCAGAGATCTTCAGTGTGTACCACACAACTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp GTACTGGCTAGCTTTCTCCCCATTTGGGACAGAATGTCTCGGTTTATGAGTTTAAGACCTTGGCACATTTaGGTACAGTCTTGCCACGGC +
Preference number: 5 (lower is better)
Translates to: VLASFLPIWDRMSRFMSLRPWHI*VQSCHG
Trigger: GCCGTGGCAAGACTGTACCAAAATGTGCCAAGGTCT...TAAACTCATAAACCGAGACATTCTGTCCCAAATGGGGAGAAAGCTAGCCAGTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS TCA 90 bp TCTGGAGCTCTGAGAGGGCAAAGCAGTTTTCTCCATTTGATTTTCTaGAACTTCACAAGGCTTGTGAGACCGCGCAAAGGAGTTCCTCTT +
Preference number: 5 (lower is better)
Translates to: SGALRGQSSFLHLIF*NFTRLVRPRKGVPL
Trigger: AAGAGGAACTCCTTTGCGCGGTCTCACAAGCCTTGTGAAGTTTCAGAAAATCAAATGGAGAAAACTGCTTTGCCCTCTCAGAGCTCCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp GTACTGGCTAGCTTTCTCCCCATTTGGGACAGAATGTCTCGGTTTATGAGTTTAATCAGATGTGGCTTGTaGTGGTCATCGTCATGCGCA +
Preference number: 5 (lower is better)
Translates to: VLASFLPIWDRMSRFMSLIRCGL*WSSSCA
Trigger: TGCGCATGACGATGACCACAACAAGCCACATCTGAT...TAAACTCATAAACCGAGACATTCTGTCCCAAATGGGGAGAAAGCTAGCCAGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp TTCTGTCCACCAAGGTCTCAGCAAAACCTTCTAAGAAATGGCCTGATAGTAAATTCCCAGGAGAACAGATaGCTCCTCTCCTCAATGGGG +
Preference number: 5 (lower is better)
Translates to: FCPPRSQQNLLRNGLIVNSQENR*LLSSMG
Trigger: CCCCATTGAGGAGAGGAGCAATCTGTTCTCCTGGGA...ATTTACTATCAGGCCATTTCTTAGAAGGTTTTGCTGAGACCTTGGTGGACAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp AAAGAAAGGTTTGAATATGGAAGTCTCGGGAAGCCAGGGGTGAGAGAGGAGCACTCTTCTATGAAGACCTaGGCACATTTTGGTACAGTC +
Preference number: 5 (lower is better)
Translates to: KERFEYGSLGKPGVREEHSSMKT*AHFGTV
Trigger: GACTGTACCAAAATGTGCCAAGGTCTTCATAGAAGA...GTGCTCCTCTCTCACCCCTGGCTTCCCGAGACTTCCATATTCAAACCTTTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp GTACTGGCTAGCTTTCTCCCCATTTGGGACAGAATGTCTCGGTTTATGAGTTTATCTCGGAAGTCTCGCTaGCCTTTTGGACATGAATCA +
Preference number: 5 (lower is better)
Translates to: VLASFLPIWDRMSRFMSLSRKSR*PFGHES
Trigger: TGATTCATGTCCAAAAGGCAAGCGAGACTTCCGAGA...TAAACTCATAAACCGAGACATTCTGTCCCAAATGGGGAGAAAGCTAGCCAGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS GCA 90 bp ACTCCTTCCATTTATTGGCCTTCCATGAAGGGCATCGTCCCGATCTaGAAGCTTTGTGAGTTCGAGGTTTATGCAAATGACTGCAATATT +
Preference number: 5 (lower is better)
Translates to: TPSIYWPSMKGIVPI*KLCEFEVYANDCNI
Trigger: AATATTGCAGTCATTTGCATAAACCTCGAACTCACAAAGCTTGCAGATCGGGACGATGCCCTTCATGGAAGGCCAATAAATGGAAGGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp TTTCTCCCCATTTGGGACAGAATGTCTCGGTTTATGAGTTTAGTTACAAATAGATGCCAGGCTACATTCTaGTTCAGTCACAGGACGGCC +
Preference number: 5 (lower is better)
Translates to: FLPIWDRMSRFMSLVTNRCQATF*FSHRTA
Trigger: GGCCGTCCTGTGACTGAACAAGAATGTAGCCTGGCA...TCTATTTGTAACTAAACTCATAAACCGAGACATTCTGTCCCAAATGGGGAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS TCA 90 bp TCGAGTTGTTTGACCCGCTGTATTCGAAAACAGCACCCTGGATGTTaGTCTCTTTCTTCGCCATACTTACAACAAAGTTTCCATTCAGGA +
Preference number: 5 (lower is better)
Translates to: SSCLTRCIRKQHPGC*SLSSPYLQQSFHSG
Trigger: TCCTGAATGGAAACTTTGTTGTAAGTATGGCGAAGAAAGAGATCAACATCCAGGGTGCTGTTTTCGAATACAGCGGGTCAAACAACTCGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 90 bp TTAAACGCTTTAAACATAAGTCACTGGGCCAACCGTTCTCAGTCCTaGATGCTACTCTTCTCTCCATTATCCCAATTCCACAAGTTACTG +
Preference number: 5 (lower is better)
Translates to: LNALNISHWANRSQS*MLLFSPLSQFHKLL
Trigger: CAGTAACTTGTGGAATTGGGATAATGGAGAGAAGAGTAGCATGCAGGACTGAGAACGGTTGGCCCAGTGACTTATGTTTAAAGCGTTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS CCA 90 bp ATTTCTTTTGGGCATCTGGCTTTAAACGCTTTAAACATAAGTCACTaGGCCAACCGTTCTCAGTCCTGCATGCTACTCTTCTCTCCATTA +
Preference number: 5 (lower is better)
Translates to: ISFGHLALNALNISH*ANRSQSCMLLFSPL
Trigger: TAATGGAGAGAAGAGTAGCATGCAGGACTGAGAACGGTTGGCCCAGTGACTTATGTTTAAAGCGTTTAAAGCCAGATGCCCAAAAGAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS-3UTR CAA 90 bp CTCCCTTACTGCTCTGGAAGCTTGGGGATCGTTTTCTTGACTGACTATTTCTGTAGTTCACAGTCCATATaGCACTTTTCAGTCACAAAC +
Preference number: 5 (lower is better)
Translates to: LPYCSGSLGIVFLTDYFCSSQSI*HFSVTN
Trigger: GTTTGTGACTGAAAAGTGCAATATGGACTGTGAACT...ACAGAAATAGTCAGTCAAGAAAACGATCCCCAAGCTTCCAGAGCAGTAAGGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS-3UTR CAA 90 bp TTCTGTCCACCAAGGTCTCAGCAAAACCTTCTAAGAAATGGCCTGATAGTAAATTCTTCTATGAAGACCTaGGCACATTTTGGTACAGTC +
Preference number: 5 (lower is better)
Translates to: FCPPRSQQNLLRNGLIVNSSMKT*AHFGTV
Trigger: GACTGTACCAAAATGTGCCAAGGTCTTCATAGAAGA...ATTTACTATCAGGCCATTTCTTAGAAGGTTTTGCTGAGACCTTGGTGGACAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155907.2
CDS CCA 72 bp GTTGACCTGGCCACGGTAGAAACAGTGGCGCAGGTCTaGGGACTCCGTGCTGCGCCCGCCTGGTCCAGGTAC +
Preference number: 6 (lower is better)
Translates to: VDLATVETVAQV*GLRAAPAWSRY
Trigger: GTACCTGGACCAGGCGGGCGCAGCACGGAGTCCCCAGACCTGCGCCACTGTTTCTACCGTGGCCAGGTCAAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS TCA 72 bp CGCCCGTCTTCATCCTGGCAGACCACAGCCCTGTGCTaGAGACCACCGGCGCAGCTTCTGGAGCATGCTCCC +
Preference number: 6 (lower is better)
Translates to: RPSSSWQTTALC*RPPAQLLEHAP
Trigger: GGGAGCATGCTCCAGAAGCTGCGCCGGTGGTCTTCAGCACAGGGCTGTGGTCTGCCAGGATGAAGACGGGCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 72 bp TCCATGTCCCTGGTCACACACAGCCCACGGTGGCAGTaGATCCCGGGACCACAGCTCGTCCCATCTGCCAGC +
Preference number: 6 (lower is better)
Translates to: SMSLVTHSPRWQ*IPGPQLVPSAS
Trigger: GCTGGCAGATGGGACGAGCTGTGGTCCCGGGATGCACTGCCACCGTGGGCTGTGTGTGACCAGGGACATGGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp CGGGTCTCCATGTCCCTGGTCACACACAGCCCACGGTaGCAGTGCATCCCGGGACCACAGCTCGTCCCATCT +
Preference number: 6 (lower is better)
Translates to: RVSMSLVTHSPR*QCIPGPQLVPS
Trigger: AGATGGGACGAGCTGTGGTCCCGGGATGCACTGCCACCGTGGGCTGTGTGTGACCAGGGACATGGAGACCCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp CATCCTGCGGCCCACACAGTACCTTCCTCCGTTTCGTaGCTCGGGCCGGTCACAGAGCCGGGCTGTGCTCTT +
Preference number: 6 (lower is better)
Translates to: HPAAHTVPSSVS*LGPVTEPGCAL
Trigger: AAGAGCACAGCCCGGCTCTGTGACCGGCCCGAGCCACGAAACGGAGGAAGGTACTGTGTGGGCCGCAGGATG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CAA 90 bp CAGCTCGTCCCATCTGCCAGCGGCATGTGCTGTGTGCGACAGCCCTaGTGGACGCCTTCTGCACTCGTGCACCACAGACGTCGGCAGTGC +
Preference number: 6 (lower is better)
Translates to: QLVPSASGMCCVRQP*WTPSALVHHRRRQC
Trigger: GCACTGCCGACGTCTGTGGTGCACGAGTGCAGAAGGCGTCCACAAGGGCTGTCGCACACAGCACATGCCGCTGGCAGATGGGACGAGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 72 bp AGGTACCGGGGTCCCCAAGTGCACCTCAGTGTAGCCTaGAGCCAGGAAGGCCGCATCAGCGCTCAGGTTCAG +
Preference number: 6 (lower is better)
Translates to: RYRGPQVHLSVA*SQEGRISAQVQ
Trigger: CTGAACCTGAGCGCTGATGCGGCCTTCCTGGCTGCAGGCTACACTGAGGTGCACTTGGGGACCCCGGTACCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 72 bp CACAGCTCGTCCCATCTGCCAGCGGCATGTGCTGTGTaGGACAGCCCTTGTGGACGCCTTCTGCACTCGTGC +
Preference number: 6 (lower is better)
Translates to: HSSSHLPAACAV*DSPCGRLLHSC
Trigger: GCACGAGTGCAGAAGGCGTCCACAAGGGCTGTCGCACACAGCACATGCCGCTGGCAGATGGGACGAGCTGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp TCTGCCAGCGGCATGTGCTGTGTGCGACAGCCCTTGTaGACGCCTTCTGCACTCGTGCACCACAGACGTCGG +
Preference number: 6 (lower is better)
Translates to: SASGMCCVRQPL*TPSALVHHRRR
Trigger: CCGACGTCTGTGGTGCACGAGTGCAGAAGGCGTCCACAAGGGCTGTCGCACACAGCACATGCCGCTGGCAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp ACGGGCCTGACTGCCTCTTCCACAGGACACAGAGCATaGGGTCCACGATCCATGGCGCCACTGTGCTGCCCT +
Preference number: 6 (lower is better)
Translates to: TGLTASSTGHRA*GPRSMAPLCCP
Trigger: AGGGCAGCACAGTGGCGCCATGGATCGTGGACCCCATGCTCTGTGTCCTGTGGAAGAGGCAGTCAGGCCCGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp ACGCCAGCACTGCCGCTGCCCCTGAGGCCGGGTGGATaGATCACACATGTCTTCAGACACTCGACCAGTGCC +
Preference number: 6 (lower is better)
Translates to: TPALPLPLRPGG*ITHVFRHSTSA
Trigger: GGCACTGGTCGAGTGTCTGAAGACATGTGTGATCCATCCACCCGGCCTCAGGGGCAGCGGCAGTGCTGGCGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS CAA 72 bp CGTGGCTCGGGCCGGTCACAGAGCCGGGCTGTGCTCTaGATTCCACCTCCGCATGTCCTTGAACACGAGCTG +
Preference number: 6 (lower is better)
Translates to: RGSGRSQSRAVL*IPPPHVLEHEL
Trigger: CAGCTCGTGTTCAAGGACATGCGGAGGTGGAATCAAGAGCACAGCCCGGCTCTGTGACCGGCCCGAGCCACG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS TCA 72 bp GTGGCTCGGGCCGGTCACAGAGCCGGGCTGTGCTCTTaGTTCCACCTCCGCATGTCCTTGAACACGAGCTGT +
Preference number: 6 (lower is better)
Translates to: VARAGHRAGLCS*FHLRMSLNTSC
Trigger: ACAGCTCGTGTTCAAGGACATGCGGAGGTGGAATCAAGAGCACAGCCCGGCTCTGTGACCGGCCCGAGCCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp TTCTGCTGGGAACGTGGCTTGGCTGCTCAGAGGAGCTaGGAGCTCGGCTGTATAAGGGTGGGCAGGCTGCCA +
Preference number: 6 (lower is better)
Translates to: FCWERGLAAQRS*ELGCIRVGRLP
Trigger: TGGCAGCCTGCCCACCCTTATACAGCCGAGCTCCCAGCTCCTCTGAGCAGCCAAGCCACGTTCCCAGCAGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CAA 72 bp CCATCTGCCAGCGGCATGTGCTGTGTGCGACAGCCCTaGTGGACGCCTTCTGCACTCGTGCACCACAGACGT +
Preference number: 6 (lower is better)
Translates to: PSASGMCCVRQP*WTPSALVHHRR
Trigger: ACGTCTGTGGTGCACGAGTGCAGAAGGCGTCCACAAGGGCTGTCGCACACAGCACATGCCGCTGGCAGATGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS TCA 72 bp CCTGTCGTGGGTGGAAACGAACTTCCCAGGACCCAGTaGGAAGGAGCGAGATCGGGCAGAGCAACCCGGTCA +
Preference number: 6 (lower is better)
Translates to: PVVGGNELPRTQ*EGARSGRATRS
Trigger: TGACCGGGTTGCTCTGCCCGATCTCGCTCCTTCTCACTGGGTCCTGGGAAGTTCGTTTCCACCCACGACAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 72 bp CATGAGCATCCCGGCAGCTCACATAACGGGCCTGACTaGCTCTTCCACAGGACACAGAGCATGGGGTCCACG +
Preference number: 6 (lower is better)
Translates to: HEHPGSSHNGPD*LFHRTQSMGST
Trigger: CGTGGACCCCATGCTCTGTGTCCTGTGGAAGAGGCAGTCAGGCCCGTTATGTGAGCTGCCGGGATGCTCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS TCA 72 bp AATGCCGGTTCTGGGGAAACACGTCTCCGAACTCATTaGCCCGCGTGGGGGTCACCACTTCGTAGGAGGCCA +
Preference number: 6 (lower is better)
Translates to: NAGSGETRLRTH*PAWGSPLRRRP
Trigger: TGGCCTCCTACGAAGTGGTGACCCCCACGCGGGTCAATGAGTTCGGAGACGTGTTTCCCCAGAACCGGCATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS TCA 72 bp ATTCCAGTGCGGACAAGGTCCGGAGCCACAGTGCCTTaGCTCTGGGGGCTTGGAGGACCCATCACAGGAAGT +
Preference number: 6 (lower is better)
Translates to: IPVRTRSGATVP*LWGLGGPITGS
Trigger: ACTTCCTGTGATGGGTCCTCCAAGCCCCCAGAGTCAAGGCACTGTGGCTCCGGACCTTGTCCGCACTGGAAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 72 bp ACTCACTCGTTGCCCAGCTGGGACACGGAAATTCATTaGAGTTCTCCAGCACCACCCGCGGAAGCTCCCGAC +
Preference number: 6 (lower is better)
Translates to: THSLPSWDTEIH*SSPAPPAEAPD
Trigger: GTCGGGAGCTTCCGCGGGTGGTGCTGGAGAACTGCAATGAATTTCCGTGTCCCAGCTGGGCAACGAGTGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 72 bp CAGCACGCATCTGATATCCATGTCCACAGGTGGCCGTaGAAGACCCCCACGGTCCTACATGCCAAGAAGCGC +
Preference number: 6 (lower is better)
Translates to: QHASDIHVHRWP*KTPTVLHAKKR
Trigger: GCGCTTCTTGGCATGTAGGACCGTGGGGGTCTTGCACGGCCACCTGTGGACATGGATATCAGATGCGTGCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 72 bp ACATGTCTTCAGACACTCGACCAGTGCCTCTCAGCCTaGAGTACACCTCCCTCTGCTGCACCCCTGACCCAC +
Preference number: 6 (lower is better)
Translates to: TCLQTLDQCLSA*STPPSAAPLTH
Trigger: GTGGGTCAGGGGTGCAGCAGAGGGAGGTGTACTGCAGGCTGAGAGGCACTGGTCGAGTGTCTGAAGACATGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS CAA 72 bp CACGCACGGAGCTCACAGGGTCTCAGCGACTCGGGCTaGGTACTGGCATTACAGAAACCATCCCTCATGGGG +
Preference number: 6 (lower is better)
Translates to: HARSSQGLSDSG*VLALQKPSLMG
Trigger: CCCCATGAGGGATGGTTTCTGTAATGCCAGTACCAAGCCCGAGTCGCTGAGACCCTGTGAGCTCCGTGCGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CAA 72 bp AATTCCAGTGCGGACAAGGTCCGGAGCCACAGTGCCTaGACTCTGGGGGCTTGGAGGACCCATCACAGGAAG +
Preference number: 6 (lower is better)
Translates to: NSSADKVRSHSA*TLGAWRTHHRK
Trigger: CTTCCTGTGATGGGTCCTCCAAGCCCCCAGAGTCAAGGCACTGTGGCTCCGGACCTTGTCCGCACTGGAATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp GTAGGAGGCCAGAGTCTTCACCAGGGCTTCCTGTCGTaGGTGGAAACGAACTTCCCAGGACCCAGTGAGAAG +
Preference number: 6 (lower is better)
Translates to: VGGQSLHQGFLS*VETNFPGPSEK
Trigger: CTTCTCACTGGGTCCTGGGAAGTTCGTTTCCACCCACGACAGGAAGCCCTGGTGAAGACTCTGGCCTCCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp CCGGAGCTACGTTTCTTCCGGCTGAAATGCCGGTTCTaGGGAAACACGTCTCCGAACTCATTGACCCGCGTG +
Preference number: 6 (lower is better)
Translates to: PELRFFRLKCRF*GNTSPNSLTRV
Trigger: CACGCGGGTCAATGAGTTCGGAGACGTGTTTCCCCAGAACCGGCATTTCAGCCGGAAGAAACGTAGCTCCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp ACGCACGGAGCTCACAGGGTCTCAGCGACTCGGGCTTaGTACTGGCATTACAGAAACCATCCCTCATGGGGT +
Preference number: 6 (lower is better)
Translates to: THGAHRVSATRA*YWHYRNHPSWG
Trigger: ACCCCATGAGGGATGGTTTCTGTAATGCCAGTACCAAGCCCGAGTCGCTGAGACCCTGTGAGCTCCGTGCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS TCA 72 bp CGATACCAGGACACATCTTCAGGGCAGGCGTGCAGGTaGCACTGCATCATGCTAGGTGGCTTGGGCAGTTCA +
Preference number: 6 (lower is better)
Translates to: RYQDTSSGQACR*HCIMLGGLGSS
Trigger: TGAACTGCCCAAGCCACCTAGCATGATGCAGTGTCACCTGCACGCCTGCCCTGAAGATGTGTCCTGGTATCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 72 bp CACACTTGTGATCCAGGGCCAAACATGAGCTCACACTaGCTGTTCCCATCGTACACGGAGCCCGGAAGCTGT +
Preference number: 6 (lower is better)
Translates to: HTCDPGPNMSSH*LFPSYTEPGSC
Trigger: ACAGCTTCCGGGCTCCGTGTACGATGGGAACAGGCAGTGTGAGCTCATGTTTGGCCCTGGATCACAAGTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 72 bp ACGTCAGGGTTGTATAAATTACCCACACACAACACCTaGAGAACGAGCTCCGCCTCCAGCCGGTCCGTGCTG +
Preference number: 6 (lower is better)
Translates to: TSGLYKLPTHNT*RTSSASSRSVL
Trigger: CAGCACGGACCGGCTGGAGGCGGAGCTCGTTCTGCAGGTGTTGTGTGTGGGTAATTTATACAACCCTGACGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp TCGTCGTGTGGAACATTAAACACGTGTCCAAGCTCATaGGCGATGGTGAAGGCGGCGCTCAGCCCGTTCTCT +
Preference number: 6 (lower is better)
Translates to: SSCGTLNTCPSS*AMVKAALSPFS
Trigger: AGAGAACGGGCTGAGCGCCGCCTTCACCATCGCCCATGAGCTTGGACACGTGTTTAATGTTCCACACGACGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp GGAGCTCACAGGGTCTCAGCGACTCGGGCTTGGTACTaGCATTACAGAAACCATCCCTCATGGGGTCTTCAC +
Preference number: 6 (lower is better)
Translates to: GAHRVSATRAWY*HYRNHPSWGLH
Trigger: GTGAAGACCCCATGAGGGATGGTTTCTGTAATGCCAGTACCAAGCCCGAGTCGCTGAGACCCTGTGAGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp AGGGCAGGCGTGCAGGTGACACTGCATCATGCTAGGTaGCTTGGGCAGTTCACAGCTGTGTTCCTGTGTCAT +
Preference number: 6 (lower is better)
Translates to: RAGVQVTLHHAR*LGQFTAVFLCH
Trigger: ATGACACAGGAACACAGCTGTGAACTGCCCAAGCCACCTAGCATGATGCAGTGTCACCTGCACGCCTGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CAA 72 bp GAACCCTCCGCATCTGCCGTAGACTTTGGTTCCGTCTaGGGACCTGTGGATGATGACAGAGGCATACCTCCC +
Preference number: 6 (lower is better)
Translates to: EPSASAVDFGSV*GPVDDDRGIPP
Trigger: GGGAGGTATGCCTCTGTCATCATCCACAGGTCCCAAGACGGAACCAAAGTCTACGGCAGATGCGGAGGGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS TCA 72 bp CCACACTTGTCTCTCTTGGCCTTGGAGTTTAACACGTaGTCACAGCCAGCTTGCCGACAGAGGCCCTGGACA +
Preference number: 6 (lower is better)
Translates to: PHLSLLALEFNT*SQPACRQRPWT
Trigger: TGTCCAGGGCCTCTGTCGGCAAGCTGGCTGTGATCACGTGTTAAACTCCAAGGCCAAGAGAGACAAGTGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 72 bp TGGATGGATCACACATGTCTTCAGACACTCGACCAGTaGCTCTCAGCCTGCAGTACACCTCCCTCTGCTGCA +
Preference number: 6 (lower is better)
Translates to: WMDHTCLQTLDQ*LSACSTPPSAA
Trigger: TGCAGCAGAGGGAGGTGTACTGCAGGCTGAGAGGCACTGGTCGAGTGTCTGAAGACATGTGTGATCCATCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS TCA 72 bp TCAAGTAGGGACACACTTGTGATCCAGGGCCAAACATaGGCTCACACTGCCTGTTCCCATCGTACACGGAGC +
Preference number: 6 (lower is better)
Translates to: SSRDTLVIQGQT*AHTACSHRTRS
Trigger: GCTCCGTGTACGATGGGAACAGGCAGTGTGAGCTCATGTTTGGCCCTGGATCACAAGTGTGTCCCTACTTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS TCA 72 bp CAGACGTCGGCAGTGCTTCAAGTAGGGACACACTTGTaGTCCAGGGCCAAACATGAGCTCACACTGCCTGTT +
Preference number: 6 (lower is better)
Translates to: QTSAVLQVGTHL*SRAKHELTLPV
Trigger: AACAGGCAGTGTGAGCTCATGTTTGGCCCTGGATCACAAGTGTGTCCCTACTTGAAGCACTGCCGACGTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 72 bp AGCAGGTCGAGGCAAGTGGGCACAATTCGACTCATCTaGCACTTCATCATGAGCATCCCGGCAGCTCACATA +
Preference number: 6 (lower is better)
Translates to: SRSRQVGTIRLI*HFIMSIPAAHI
Trigger: TATGTGAGCTGCCGGGATGCTCATGATGAAGTGGCAGATGAGTCGAATTGTGCCCACTTGCCTCGACCTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 72 bp GTTAATGGAACATTTCTGCTGGGAACGTGGCTTGGCTaGTCAGAGGAGCTGGGAGCTCGGCTGTATAAGGGT +
Preference number: 6 (lower is better)
Translates to: VNGTFLLGTWLG*SEELGARLYKG
Trigger: ACCCTTATACAGCCGAGCTCCCAGCTCCTCTGAGCAGCCAAGCCACGTTCCCAGCAGAAATGTTCCATTAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 72 bp TGTGAGGAATGCACTTTCCACAGAACCCTCCGCATCTaGCGTAGACTTTGGTTCCGTCTTGGGACCTGTGGA +
Preference number: 6 (lower is better)
Translates to: CEECTFHRTLRI*RRLWFRLGTCG
Trigger: TCCACAGGTCCCAAGACGGAACCAAAGTCTACGGCAGATGCGGAGGGTTCTGTGGAAAGTGCATTCCTCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS CCA 72 bp CGGGCTTGGTACTGGCATTACAGAAACCATCCCTCATaGGGTCTTCACTCAGCTGACACCAAACCTGTCGCT +
Preference number: 6 (lower is better)
Translates to: RAWYWHYRNHPS*GLHSADTKPVA
Trigger: AGCGACAGGTTTGGTGTCAGCTGAGTGAAGACCCCATGAGGGATGGTTTCTGTAATGCCAGTACCAAGCCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp CTGACCCACAGGTCACAGAGCACTCCTTCCATTTATTaGCCTTCCATGAAGGGCATCGTCCCGATCTGCAAG +
Preference number: 6 (lower is better)
Translates to: LTHRSQSTPSIY*PSMKGIVPICK
Trigger: CTTGCAGATCGGGACGATGCCCTTCATGGAAGGCCAATAAATGGAAGGAGTGCTCTGTGACCTGTGGGTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS CAA 72 bp CCTGACCCACAGGTCACAGAGCACTCCTTCCATTTATaGGCCTTCCATGAAGGGCATCGTCCCGATCTGCAA +
Preference number: 6 (lower is better)
Translates to: PDPQVTEHSFHL*AFHEGHRPDLQ
Trigger: TTGCAGATCGGGACGATGCCCTTCATGGAAGGCCAATAAATGGAAGGAGTGCTCTGTGACCTGTGGGTCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS TCA 72 bp ACCAAACCTGTCGCTGCTTCATTCCTTTTCCACATGTaGCAGGACACTCACTCCACTCACTCGTTGCCCAGC +
Preference number: 6 (lower is better)
Translates to: TKPVAASFLFHM*QDTHSTHSLPS
Trigger: GCTGGGCAACGAGTGAGTGGAGTGAGTGTCCTGTCACATGTGGAAAAGGAATGAAGCAGCGACAGGTTTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 72 bp CACATTGTAACCGTAATGGGCACTGTTGAAGACACCTaGCAGGGTCTGGCACGAAGAGTTGTCACCACCACA +
Preference number: 6 (lower is better)
Translates to: HIVTVMGTVEDT*QGLARRVVTTT
Trigger: TGTGGTGGTGACAACTCTTCGTGCCAGACCCTGGCAGGTGTCTTCAACAGTGCCCATTACGGTTACAATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 72 bp AATATACAGTCCTGTCTGTCACTTGGCCGGCTGGCTTaGGGGCACTCTCTGTCATCTAGCATGGTGCCAAAT +
Preference number: 6 (lower is better)
Translates to: NIQSCLSLGRLA*GHSLSSSMVPN
Trigger: ATTTGGCACCATGCTAGATGACAGAGAGTGCCCGCAAGCCAGCCGGCCAAGTGACAGACAGGACTGTATATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp TCTCTCCTGGTTTGTGAGTTAATGGAACATTTCTGCTaGGAACGTGGCTTGGCTGCTCAGAGGAGCTGGGAG +
Preference number: 6 (lower is better)
Translates to: SLLVCELMEHFC*ERGLAAQRSWE
Trigger: CTCCCAGCTCCTCTGAGCAGCCAAGCCACGTTCCCAGCAGAAATGTTCCATTAACTCACAAACCAGGAGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CAA 72 bp TGTGAGTTAATGGAACATTTCTGCTGGGAACGTGGCTaGGCTGCTCAGAGGAGCTGGGAGCTCGGCTGTATA +
Preference number: 6 (lower is better)
Translates to: CELMEHFCWERG*AAQRSWELGCI
Trigger: TATACAGCCGAGCTCCCAGCTCCTCTGAGCAGCCAAGCCACGTTCCCAGCAGAAATGTTCCATTAACTCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CAA 90 bp AGCTCCGCCTCCAGCCGGTCCGTGCTGTTAATTCTTTCAATCGAGTaGTTTGACCCGCTGTATTCGAAAACAGCACCCTGGATGTTGATC +
Preference number: 6 (lower is better)
Translates to: SSASSRSVLLILSIE*FDPLYSKTAPWMLI
Trigger: GATCAACATCCAGGGTGCTGTTTTCGAATACAGCGGGTCAAACAACTCGATTGAAAGAATTAACAGCACGGACCGGCTGGAGGCGGAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS TCA 72 bp GGTCACAGAGCACTCCTTCCATTTATTGGCCTTCCATaGAGGGCATCGTCCCGATCTGCAAGCTTTGTGAGT +
Preference number: 6 (lower is better)
Translates to: GHRALLPFIGLP*RASSRSASFVS
Trigger: ACTCACAAAGCTTGCAGATCGGGACGATGCCCTTCATGGAAGGCCAATAAATGGAAGGAGTGCTCTGTGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS GCA 72 bp GATTCTCTCCTGGTTTGTGAGTTAATGGAACATTTCTaGTGGGAACGTGGCTTGGCTGCTCAGAGGAGCTGG +
Preference number: 6 (lower is better)
Translates to: DSLLVCELMEHF*WERGLAAQRSW
Trigger: CCAGCTCCTCTGAGCAGCCAAGCCACGTTCCCAGCAGAAATGTTCCATTAACTCACAAACCAGGAGAGAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp CCGGAAGCTGTGGAGACAGGTCATATGTTCTCCCGTTaGGTTTGTCAAGAAGGCATTCTCCATGACCAGTGT +
Preference number: 6 (lower is better)
Translates to: PEAVETGHMFSR*VCQEGILHDQC
Trigger: ACACTGGTCATGGAGAATGCCTTCTTGACAAACCCAACGGGAGAACATATGACCTGTCTCCACAGCTTCCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp TTGGCACATTTTGGTACAGTCTTGCCACGGCCCGTATaGATCCCAGGAGAACAGATTGCTCCTCTCCTCAAT +
Preference number: 6 (lower is better)
Translates to: LAHFGTVLPRPV*IPGEQIAPLLN
Trigger: ATTGAGGAGAGGAGCAATCTGTTCTCCTGGGATCCATACGGGCCGTGGCAAGACTGTACCAAAATGTGCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS TCA 72 bp CCAAATATCTCACTGATACACTTAACAGCACGCATCTaGTATCCATGTCCACAGGTGGCCGTGCAAGACCCC +
Preference number: 6 (lower is better)
Translates to: PNISLIHLTARI*YPCPQVAVQDP
Trigger: GGGGTCTTGCACGGCCACCTGTGGACATGGATATCAGATGCGTGCTGTTAAGTGTATCAGTGAGATATTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CAA 72 bp TCCAGCCGGTCCGTGCTGTTAATTCTTTCAATCGAGTaGTTTGACCCGCTGTATTCGAAAACAGCACCCTGG +
Preference number: 6 (lower is better)
Translates to: SSRSVLLILSIE*FDPLYSKTAPW
Trigger: CCAGGGTGCTGTTTTCGAATACAGCGGGTCAAACAACTCGATTGAAAGAATTAACAGCACGGACCGGCTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp AGGCAATTTTTCTTCTATGAAGACCTTGGCACATTTTaGTACAGTCTTGCCACGGCCCGTATGGATCCCAGG +
Preference number: 6 (lower is better)
Translates to: RQFFFYEDLGTF*YSLATARMDPR
Trigger: CCTGGGATCCATACGGGCCGTGGCAAGACTGTACCAAAATGTGCCAAGGTCTTCATAGAAGAAAAATTGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp GGGCATCTGGCTTTAAACGCTTTAAACATAAGTCACTaGGCCAACCGTTCTCAGTCCTGCATGCTACTCTTC +
Preference number: 6 (lower is better)
Translates to: GHLALNALNISH*ANRSQSCMLLF
Trigger: GAAGAGTAGCATGCAGGACTGAGAACGGTTGGCCCAGTGACTTATGTTTAAAGCGTTTAAAGCCAGATGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS CAA 72 bp TCTTCTATGAAGACCTTGGCACATTTTGGTACAGTCTaGCCACGGCCCGTATGGATCCCAGGAGAACAGATT +
Preference number: 6 (lower is better)
Translates to: SSMKTLAHFGTV*PRPVWIPGEQI
Trigger: AATCTGTTCTCCTGGGATCCATACGGGCCGTGGCAAGACTGTACCAAAATGTGCCAAGGTCTTCATAGAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CAA 90 bp CAGTCGCTTTTCCCAATGATGTGCCACCTGAGTTCACAGTCCATATaGCACTTTTCAGTCACAAACAGTGGCATCGGTAAGTGGCCACAA +
Preference number: 6 (lower is better)
Translates to: QSLFPMMCHLSSQSI*HFSVTNSGIGKWPQ
Trigger: TTGTGGCCACTTACCGATGCCACTGTTTGTGACTGAAAAGTGCAATATGGACTGTGAACTCAGGTGGCACATCATTGGGAAAAGCGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS TCA 72 bp CCGGTCCGTGCTGTTAATTCTTTCAATCGAGTTGTTTaGCCCGCTGTATTCGAAAACAGCACCCTGGATGTT +
Preference number: 6 (lower is better)
Translates to: PVRAVNSFNRVV*PAVFENSTLDV
Trigger: AACATCCAGGGTGCTGTTTTCGAATACAGCGGGTCAAACAACTCGATTGAAAGAATTAACAGCACGGACCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 72 bp GACATGAATCAGTATTACATGATCGAAATTTCATCCTaGGGCCCACACAGTACCTTCCTCCGTTTCGTGGCT +
Preference number: 6 (lower is better)
Translates to: DMNQYYMIEISS*GPHSTFLRFVA
Trigger: AGCCACGAAACGGAGGAAGGTACTGTGTGGGCCGCAGGATGAAATTTCGATCATGTAATACTGATTCATGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp TTGCACTTTTCAGTCACAAACAGTGGCATCGGTAAGTaGCCACAATTGTGGTCAGATACAACTGCATGGTCG +
Preference number: 6 (lower is better)
Translates to: LHFSVTNSGIGK*PQLWSDTTAWS
Trigger: CGACCATGCAGTTGTATCTGACCACAATTGTGGCCACTTACCGATGCCACTGTTTGTGACTGAAAAGTGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS TCA 72 bp CTGAGAGGGCAAAGCAGTTTTCTCCATTTGATTTTCTaGAACTTCACAAGGCTTGTGAGACCGCGCAAAGGA +
Preference number: 6 (lower is better)
Translates to: LRGQSSFLHLIF*NFTRLVRPRKG
Trigger: TCCTTTGCGCGGTCTCACAAGCCTTGTGAAGTTTCAGAAAATCAAATGGAGAAAACTGCTTTGCCCTCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS TCA 72 bp AGGAGAACAGATTGCTCCTCTCCTCAATGGGGATGTTaGAGGAATAGCGCACGTCAGGGTTGTATAAATTAC +
Preference number: 6 (lower is better)
Translates to: RRTDCSSPQWGC*RNSARQGCINY
Trigger: GTAATTTATACAACCCTGACGTGCGCTATTCCTTCAACATCCCCATTGAGGAGAGGAGCAATCTGTTCTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 72 bp TTAAACATAAGTCACTGGGCCAACCGTTCTCAGTCCTaGATGCTACTCTTCTCTCCATTATCCCAATTCCAC +
Preference number: 6 (lower is better)
Translates to: LNISHWANRSQS*MLLFSPLSQFH
Trigger: GTGGAATTGGGATAATGGAGAGAAGAGTAGCATGCAGGACTGAGAACGGTTGGCCCAGTGACTTATGTTTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS CCA 72 bp TATTCTCTAGGGTTCTCCAGCTGCATGCCTGAGCAATaGATCTTCAATATTCTTCCCCTGACGTTAAGGTCA +
Preference number: 6 (lower is better)
Translates to: YSLGFSSCMPEQ*IFNILPLTLRS
Trigger: TGACCTTAACGTCAGGGGAAGAATATTGAAGATCCATTGCTCAGGCATGCAGCTGGAGAACCCTAGAGAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS CAA 72 bp AGGACTGGTTCTAAGAAATACTCCCCATCATTTGCTTaGAATGTCCCCATCAGTCCTCCACAGAGACTGAAG +
Preference number: 6 (lower is better)
Translates to: RTGSKKYSPSFA*NVPISPPQRLK
Trigger: CTTCAGTCTCTGTGGAGGACTGATGGGGACATTCAAAGCAAATGATGGGGAGTATTTCTTAGAACCAGTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS GCA 72 bp CGAAGTCGGAGCATTGCTTTTCTCGGAAGTCTCGCTTaGCTTTTGGACATGAATCAGTATTACATGATCGAA +
Preference number: 6 (lower is better)
Translates to: RSRSIAFLGSLA*LLDMNQYYMIE
Trigger: TTCGATCATGTAATACTGATTCATGTCCAAAAGGCAAGCGAGACTTCCGAGAAAAGCAATGCTCCGACTTCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CAA 72 bp TCGAAGTCGGAGCATTGCTTTTCTCGGAAGTCTCGCTaGCCTTTTGGACATGAATCAGTATTACATGATCGA +
Preference number: 6 (lower is better)
Translates to: SKSEHCFSRKSR*PFGHESVLHDR
Trigger: TCGATCATGTAATACTGATTCATGTCCAAAAGGCAAGCGAGACTTCCGAGAAAAGCAATGCTCCGACTTCGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CAA 72 bp GAAAGCGGCTTCGTTAAAGGGTCACAGAGACTTTCATaGGCTTGTACGTTTTGCTCATTCACACATTTCACC +
Preference number: 6 (lower is better)
Translates to: ESGFVKGSQRLS*ACTFCSFTHFT
Trigger: GGTGAAATGTGTGAATGAGCAAAACGTACAAGCCAATGAAAGTCTCTGTGACCCTTTAACGAAGCCGCTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS CAA 90 bp ATCGAGTTGTTTGACCCGCTGTATTCGAAAACAGCACCCTGGATGTaGATCTCTTTCTTCGCCATACTTACAACAAAGTTTCCATTCAGG +
Preference number: 6 (lower is better)
Translates to: IELFDPLYSKTAPWM*ISFFAILTTKFPFR
Trigger: CCTGAATGGAAACTTTGTTGTAAGTATGGCGAAGAAAGAGATCAACATCCAGGGTGCTGTTTTCGAATACAGCGGGTCAAACAACTCGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS TCA 72 bp TTGACCCGCTGTATTCGAAAACAGCACCCTGGATGTTaGTCTCTTTCTTCGCCATACTTACAACAAAGTTTC +
Preference number: 6 (lower is better)
Translates to: LTRCIRKQHPGC*SLSSPYLQQSF
Trigger: GAAACTTTGTTGTAAGTATGGCGAAGAAAGAGATCAACATCCAGGGTGCTGTTTTCGAATACAGCGGGTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CCA 72 bp AAAGCGGCTTCGTTAAAGGGTCACAGAGACTTTCATTaGCTTGTACGTTTTGCTCATTCACACATTTCACCA +
Preference number: 6 (lower is better)
Translates to: KAASLKGHRDFH*LVRFAHSHISP
Trigger: TGGTGAAATGTGTGAATGAGCAAAACGTACAAGCCAATGAAAGTCTCTGTGACCCTTTAACGAAGCCGCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11
CDS CAA 72 bp TCATTTGGCCATTGGGAAACTGACAGATCACAAATCTaGATTTTACCCCTCCACCACAGGTTTGTGTGCATT +
Preference number: 6 (lower is better)
Translates to: SFGHWETDRSQI*ILPLHHRFVCI
Trigger: AATGCACACAAACCTGTGGTGGAGGGGTAAAATCAAGATTTGTGATCTGTCAGTTTCCCAATGGCCAAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035342.11
ENSMUST00000155907.2
CDS CAA 72 bp CTAAGGCCGTATATTTCTGAAAAGTTGTCTTCACTTTaGACCAGTGGTAAATATTCTCTAGGGTTCTCCAGC +
Preference number: 6 (lower is better)
Translates to: LRPYISEKLSSL*TSGKYSLGFSS
Trigger: GCTGGAGAACCCTAGAGAATATTTACCACTGGTCAAAAGTGAAGACAACTTTTCAGAAATATACGGCCTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035342.11