RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ADAM9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031555

Ensembl transcript IDs: ENSMUST00000084032.6, ENSMUST00000084035.12, ENSMUST00000207132.2, ENSMUST00000208247.3, ENSMUST00000211319.2

Found 276 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCACTGTCGTGTCTCCAACGAGTTATAAGGAACTTTTCCCGCCACTaGACAAAGTTGCCCAGCACATCTCCAGCTCCTCCAATTATATTG +
Preference number: 1 (lower is better)
Translates to: ALSCLQRVIRNFSRH*TKLPSTSPAPPIIL
Trigger: CAATATAATTGGAGGAGCTGGAGATGTGCTGGGCAACTTTGTTCAGTGGCGGGAAAAGTTCCTTATAACTCGTTGGAGACACGACAGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211319.2
3UTR-3UTR TCA 90 bp ACATTGATCCCACCTGCGTGGCTCCTTGAACATACTGTTCCTACAAACGCCATTAACTTTTCCCGCCACTaGACAAAGTTGCCCAGCACA +
Preference number: 2 (lower is better)
Translates to: TLIPPAWLLEHTVPTNAINFSRH*TKLPST
Trigger: TGTGCTGGGCAACTTTGTTCAGTGGCGGGAAAAGTT...AATGGCGTTTGTAGGAACAGTATGTTCAAGGAGCCACGCAGGTGGGATCAATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211319.2
3UTR-3UTR GCA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGATGGCTGTTAATCCATaGAAGATGAAAATGCAGACG +
Preference number: 2 (lower is better)
Translates to: NCGSCVSSFEISASLCIKMAVNP*KMKMQT
Trigger: CGTCTGCATTTTCATCTTGCATGGATTAACAGCCAT...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
3UTR-3UTR CCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAGTTTGTGTTCATTCATaGTTGGAAGAGAAAGGCTTT +
Preference number: 2 (lower is better)
Translates to: TSSALNPQMARENILTMEVCVHS*LEEKGF
Trigger: AAAGCCTTTCTCTTCCAACCATGAATGAACACAAAC...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
3UTR-3UTR CCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACGTTTGTGTTCATTCATaGTTGGAAGAGAAAGGCTTT +
Preference number: 2 (lower is better)
Translates to: NPQMARENILTMETFTLHVCVHS*LEEKGF
Trigger: AAAGCCTTTCTCTTCCAACCATGAATGAACACAAAC...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
3UTR-3UTR CCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTGTTTGTGTTCATTCATaGTTGGAAGAGAAAGGCTTT +
Preference number: 2 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFVCVHS*LEEKGF
Trigger: AAAGCCTTTCTCTTCCAACCATGAATGAACACAAAC...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
3UTR TCA 72 bp TGTCTCCAACGAGTTATAAGGAACTTTTCCCGCCACTaGACAAAGTTGCCCAGCACATCTCCAGCTCCTCCA +
Preference number: 3 (lower is better)
Translates to: CLQRVIRNFSRH*TKLPSTSPAPP
Trigger: TGGAGGAGCTGGAGATGTGCTGGGCAACTTTGTTCAGTGGCGGGAAAAGTTCCTTATAACTCGTTGGAGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211319.2
3UTR TCA 72 bp TTGCCCAAACACATTGATCCCACCTGCGTGGCTCCTTaGACATACTGTTCCTACAAACGCCATTCCTGCAGT +
Preference number: 3 (lower is better)
Translates to: LPKHIDPTCVAP*TYCSYKRHSCS
Trigger: ACTGCAGGAATGGCGTTTGTAGGAACAGTATGTTCAAGGAGCCACGCAGGTGGGATCAATGTGTTTGGGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211319.2
3UTR-3UTR CAA 90 bp GTCGTGTCTCCAACGAGTTATAAGGAACTTTTCCCGCCACTGAACAAAGTTGCCTGCTATCCAGGTAGTTaGCTAAGCGAATCATCTCTT +
Preference number: 3 (lower is better)
Translates to: VVSPTSYKELFPPLNKVACYPGS*LSESSL
Trigger: AAGAGATGATTCGCTTAGCAAACTACCTGGATAGCA...GGCAACTTTGTTCAGTGGCGGGAAAAGTTCCTTATAACTCGTTGGAGACACGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211319.2
3UTR GCA 72 bp TGCAGTTCCACCAAAGCCTTTCTTCAAAACCAACTGTaGACTGTCGTGTCTCCAACGAGTTATAAGGAACTT +
Preference number: 3 (lower is better)
Translates to: CSSTKAFLQNQL*TVVSPTSYKEL
Trigger: AAGTTCCTTATAACTCGTTGGAGACACGACAGTGCACAGTTGGTTTTGAAGAAAGGCTTTGGTGGAACTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211319.2
3UTR GCA 72 bp TGCTTGGGTATACTAAACACCTCGTACCATAGAGTGTaGACTTCAAACAAAACAACACTGCTGCAATGCTTT +
Preference number: 3 (lower is better)
Translates to: CLGILNTSYHRV*TSNKTTLLQCF
Trigger: AAAGCATTGCAGCAGTGTTGTTTTGTTTGAAGTGCACACTCTATGGTACGAGGTGTTTAGTATACCCAAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
3UTR-3UTR CAA 90 bp TTCATGAGCAACAATGGATGCAAATGTCTCCACAGTGATTTGCCCAAACACATTGCTCCTCCAATTATATaGATAGGATTTCTGTCTGTC +
Preference number: 3 (lower is better)
Translates to: FMSNNGCKCLHSDLPKHIAPPII*IGFLSV
Trigger: GACAGACAGAAATCCTATCAATATAATTGGAGGAGC...AATGTGTTTGGGCAAATCACTGTGGAGACATTTGCATCCATTGTTGCTCATGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211319.2
3UTR TCA 72 bp TTTCTAGTCCAACCAGCACAATTCGAATGTTTAACATaGTGTACATGCTATCCAGGTAGTTTGCTAAGCGAA +
Preference number: 3 (lower is better)
Translates to: FLVQPAQFECLT*CTCYPGSLLSE
Trigger: TTCGCTTAGCAAACTACCTGGATAGCATGTACATCATGTTAAACATTCGAATTGTGCTGGTTGGACTAGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211319.2
3UTR TCA 72 bp ATAAGTCCATATAAATGGCTGTTAATCCATGCAAGATaGAAATGCAGACGTTATTGGCAATTAGTCTTCCTA +
Preference number: 3 (lower is better)
Translates to: ISPYKWLLIHAR*KCRRYWQLVFL
Trigger: TAGGAAGACTAATTGCCAATAACGTCTGCATTTTCATCTTGCATGGATTAACAGCCATTTATATGGACTTAT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTACCTGGGCCCCCTGGTaGTCTGGAGACACCTGGGCC +
Preference number: 4 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVTWAPW*SGDTWA
Trigger: GGCCCAGGTGTCTCCAGACCACCAGGGGGCCCAGGT...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp GTCGTGTCTCCAACGAGTTATAAGGAACTTTTCCCGCCACTGAACAAAGTTGCCCTTCTGCGCAGCAGCTaGGTGACACTCGGATGCTCC +
Preference number: 4 (lower is better)
Translates to: VVSPTSYKELFPPLNKVALLRSS*VTLGCS
Trigger: GGAGCATCCGAGTGTCACTCAGCTGCTGCGCAGAAG...GGCAACTTTGTTCAGTGGCGGGAAAAGTTCCTTATAACTCGTTGGAGACACGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211319.2
CDS-3UTR TCA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTTGGTGGAGGTGGCCTTaGCGGGAACTGCGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVWWRWP*RELRRL
Trigger: CAGCCTGCGCAGTTCCCGTCAAGGCCACCTCCACCA...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAGGCCCCCTGGTGGTCTaGAGACACCTGGGCCCCCTG +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGGPLVV*RHLGPL
Trigger: CAGGGGGCCCAGGTGTCTCCAGACCACCAGGGGGCC...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp ATGGATGCAAATGTCTCCACAGTGATTTGCCCAAACACATTGATCCCACCTGCGCCTCATCCCCCTGTGTaGCTTCCTTCTCTGTGTCCC +
Preference number: 4 (lower is better)
Translates to: MDANVSTVICPNTLIPPAPHPPV*LPSLCP
Trigger: GGGACACAGAGAAGGAAGGCACACAGGGGGATGAGG...CGCAGGTGGGATCAATGTGTTTGGGCAAATCACTGTGGAGACATTTGCATCCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211319.2
CDS-3UTR TCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGATGGTGGAGGTGGCCTTaGCGGGAACTGCGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGWWRWP*RELRRL
Trigger: CAGCCTGCGCAGTTCCCGTCAAGGCCACCTCCACCA...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACGGCCTTGACGGGAACTaGGCAGGCTGCTTGGCGGCG +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHGLDGN*AGCLAA
Trigger: CGCCGCCAAGCAGCCTGCGCAGTTCCCGTCAAGGCC...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGGGCCTTGACGGGAACTaGGCAGGCTGCTTGGCGGCG +
Preference number: 4 (lower is better)
Translates to: NCGSCVSSFEISASLCIKGLDGN*AGCLAA
Trigger: CGCCGCCAAGCAGCCTGCGCAGTTCCCGTCAAGGCC...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACACCTGGGCCCCCTGGTaGTCTGGAGACACCTGGGCC +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHTWAPW*SGDTWA
Trigger: GGCCCAGGTGTCTCCAGACCACCAGGGGGCCCAGGT...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTGTTTCCATGCCCAGGTaGCGGTCTGGAGACACCTGG +
Preference number: 4 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVVSMPR*RSGDTW
Trigger: CCAGGTGTCTCCAGACCGCCACCTGGGCATGGAAAC...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084032.6
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACCGGTCTGGAGACACCTaGGCCCCCTGGCGGTCTGGA +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHRSGDT*APWRSG
Trigger: TCCAGACCGCCAGGGGGCCCAGGTGTCTCCAGACCG...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp GGATGCAAATGTCTCCACAGTGATTTGCCCAAACACATTGATCCCACCTGCGTGCTGGCATTCTCCAAATaGAGCAAGCCTCTGAGTCCA +
Preference number: 4 (lower is better)
Translates to: GCKCLHSDLPKHIDPTCVLAFSK*SKPLSP
Trigger: TGGACTCAGAGGCTTGCTGCATTTGGAGAATGCCAG...CACGCAGGTGGGATCAATGTGTTTGGGCAAATCACTGTGGAGACATTTGCATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211319.2
CDS-3UTR GCA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTCCTCATCCCCCTGTGTaGCTTCCTTCTCTGTGTCCC +
Preference number: 4 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVPHPPV*LPSLCP
Trigger: GGGACACAGAGAAGGAAGGCACACAGGGGGATGAGG...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGGGCCCCCTGGTGGTCTaGAGACATTTGGGCCCCCTG +
Preference number: 4 (lower is better)
Translates to: NCGSCVSSFEISASLCIKGPLVV*RHLGPL
Trigger: CAGGGGGCCCAAATGTCTCCAGACCACCAGGGGGCC...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAGGCCCCCTGGTGGTCTaGAGACATTTGGGCCCCCTG +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMEGPLVV*RHLGPL
Trigger: CAGGGGGCCCAAATGTCTCCAGACCACCAGGGGGCC...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAACCTGGGCCCCCTGGTaGTCTGGAGACATTTGGGCC +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGTWAPW*SGDIWA
Trigger: GGCCCAAATGTCTCCAGACCACCAGGGGGCCCAGGT...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTGGCCCCCTGGTGGTCTaGAGACACCTGGGCCCCCTG +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFGPLVV*RHLGPL
Trigger: CAGGGGGCCCAGGTGTCTCCAGACCACCAGGGGGCC...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTGTAAGAGATCTGCTGTaGACTGGGCCCCAGAGCTTC +
Preference number: 4 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVVRDLL*TGPQSF
Trigger: GAAGCTCTGGGGCCCAGTTCACAGCAGATCTCTTAC...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGACTTCTGCGCAGCAGCTaGGTGACACTCGGATGCTCC +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGLLRSS*VTLGCS
Trigger: GGAGCATCCGAGTGTCACTCAGCTGCTGCGCAGAAG...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp AACGCCATTCCTGCAGTTCCACCAAAGCCTTTCTTCAAAACCAACTGTGCACTGCCTTGTCTACAACAATaGACAGCTCCACATAGCGGG +
Preference number: 4 (lower is better)
Translates to: NAIPAVPPKPFFKTNCALPCLQQ*TAPHSG
Trigger: CCCGCTATGTGGAGCTGTTCATTGTTGTAGACAAGG...CAGTGCACAGTTGGTTTTGAAGAAAGGCTTTGGTGGAACTGCAGGAATGGCGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211319.2
CDS-3UTR CCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACCTGGGCCCCCTGGTaGTCTGGAGACACCTGGGCC +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFTWAPW*SGDTWA
Trigger: GGCCCAGGTGTCTCCAGACCACCAGGGGGCCCAGGT...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAACTGCGCAGGCTGCTTaGCGGCGTAGGTTGGTACTG +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGTAQAA*RRRLVL
Trigger: CAGTACCAACCTACGCCGCCAAGCAGCCTGCGCAGT...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAATCCATGCCCAGGTGGTaGTCTGGAGACACCTGGGCC +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMESMPRW*SGDTWA
Trigger: GGCCCAGGTGTCTCCAGACCACCACCTGGGCATGGA...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084035.12
CDS-3UTR TCA 90 bp ACGAGTTATAAGGAACTTTTCCCGCCACTGAACAAAGTTGCCCAGCACATCTCCTATGTGCTCAAAGTGTaGGCTGTTGTGCAGAGGTTC +
Preference number: 4 (lower is better)
Translates to: TSYKELFPPLNKVAQHISYVLKV*AVVQRF
Trigger: GAACCTCTGCACAACAGCTCACACTTTGAGCACATA...GGAGATGTGCTGGGCAACTTTGTTCAGTGGCGGGAAAAGTTCCTTATAACTCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211319.2
CDS-3UTR TCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACCTTCTGCGCAGCAGCTaGGTGACACTCGGATGCTCC +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHLLRSS*VTLGCS
Trigger: GGAGCATCCGAGTGTCACTCAGCTGCTGCGCAGAAG...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTGCCACTGAACAAAGTTaGCCAGCACATCTCCAGCTC +
Preference number: 4 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVATEQS*PAHLQL
Trigger: GAGCTGGAGATGTGCTGGGCAACTTTGTTCAGTGGC...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGACACACTCCTTCGCTGTaGCGCAGTCACACTCCTCTC +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGHTPSL*RSHTPL
Trigger: GAGAGGAGTGTGACTGCGGCACAGCGAAGGAGTGTG...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACAGTCTGTTCCAAGTCTaGTCGCCCGGCCTCGAGGAC +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHSLFQV*SPGLED
Trigger: GTCCTCGAGGCCGGGCGACCAGACTTGGAACAGACT...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGAGTCTGTTCCAAGTCTaGTCGCCCGGCCTCGAGGAC +
Preference number: 4 (lower is better)
Translates to: NCGSCVSSFEISASLCIKSLFQV*SPGLED
Trigger: GTCCTCGAGGCCGGGCGACCAGACTTGGAACAGACT...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGATGGTCTGGAGACATTTaGGCCCCCTGGTGGTCTGGA +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGWSGDI*APWWSG
Trigger: TCCAGACCACCAGGGGGCCCAAATGTCTCCAGACCA...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTGGCCCCCTGGTGGTCTaGAGACATTTGGGCCCCCTG +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFGPLVV*RHLGPL
Trigger: CAGGGGGCCCAAATGTCTCCAGACCACCAGGGGGCC...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACTGCGCAGGCTGCTTaGCGGCGTAGGTTGGTACTG +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMETAQAA*RRRLVL
Trigger: CAGTACCAACCTACGCCGCCAAGCAGCCTGCGCAGT...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACACTGCGCAGGCTGCTTaGCGGCGTAGGTTGGTACTG +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHTAQAA*RRRLVL
Trigger: CAGTACCAACCTACGCCGCCAAGCAGCCTGCGCAGT...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAGTAAGAGATCTGCTGTaGACTGGGCCCCAGAGCTTC +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGVRDLL*TGPQSF
Trigger: GAAGCTCTGGGGCCCAGTTCACAGCAGATCTCTTAC...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTAACTTTTCCCGCCACTaGACAAAGTTGCCCAGCACA +
Preference number: 4 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVNFSRH*TKLPST
Trigger: TGTGCTGGGCAACTTTGTTCAGTGGCGGGAAAAGTT...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTTGTACATTCTCGCATTaGAGCTTTCCACACAGCGCG +
Preference number: 4 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVCTFSH*SFPHSA
Trigger: CGCGCTGTGTGGAAAGCTTCAATGCGAGAATGTACA...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTCTGGCATTCTCCAAATaGAGCAAGCCTCTGAGTCCA +
Preference number: 4 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVLAFSK*SKPLSP
Trigger: TGGACTCAGAGGCTTGCTGCATTTGGAGAATGCCAG...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACCCTCATCCCCCTGTGTaGCTTCCTTCTCTGTGTCCC +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHPHPPV*LPSLCP
Trigger: GGGACACAGAGAAGGAAGGCACACAGGGGGATGAGG...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACCACACTCCTTCGCTGTaGCGCAGTCACACTCCTCTC +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHHTPSL*RSHTPL
Trigger: GAGAGGAGTGTGACTGCGGCACAGCGAAGGAGTGTG...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGGGGAATCTGTTTCCATaGCCAGGTGGCGGTCTGGAG +
Preference number: 4 (lower is better)
Translates to: NCGSCVSSFEISASLCIKGNLFP*PGGGLE
Trigger: CTCCAGACCGCCACCTGGGCATGGAAACAGATTCCC...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084032.6
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTGCACATGGAGCCTCCTaGAAGGAACTGGCAATCTTT +
Preference number: 4 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVAHGAS*KELAIF
Trigger: AAAGATTGCCAGTTCCTTCCAGGAGGCTCCATGTGC...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTGAACATCACACTCACTaGTCTTCCCTCTGCACATGG +
Preference number: 4 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVEHHTH*SSLCTW
Trigger: CCATGTGCAGAGGGAAGACCAGTGAGTGTGATGTTC...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAACCACACCCCAGCATTTaGTGCCTCGACTGGGTGTCT +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMEPHPSI*CLDWVS
Trigger: AGACACCCAGTCGAGGCACCAAATGCTGGGGTGTGG...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACTGGTCTGGAGACATTTaGGCCCCCTGGTGGTCTGGA +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHWSGDI*APWWSG
Trigger: TCCAGACCACCAGGGGGCCCAAATGTCTCCAGACCA...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGTGGTCTGGAGACATTTaGGCCCCCTGGTGGTCTGGA +
Preference number: 4 (lower is better)
Translates to: NCGSCVSSFEISASLCIKWSGDI*APWWSG
Trigger: TCCAGACCACCAGGGGGCCCAAATGTCTCCAGACCA...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAAACCTGGGCCCCCTGGTaGTCTGGAGACATTTGGGCC +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQTWAPW*SGDIWA
Trigger: GGCCCAAATGTCTCCAGACCACCAGGGGGCCCAGGT...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACCTGGGCCCCCTGGTaGTCTGGAGACATTTGGGCC +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFTWAPW*SGDIWA
Trigger: GGCCCAAATGTCTCCAGACCACCAGGGGGCCCAGGT...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAGTTTCCATGCCCAGGTaGTGGTCTGGAGACACCTGG +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMEVSMPR*WSGDTW
Trigger: CCAGGTGTCTCCAGACCACCACCTGGGCATGGAAAC...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084035.12
CDS-3UTR TCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAACTTCTGCGCAGCAGCTaGGTGACACTCGGATGCTCC +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQLLRSS*VTLGCS
Trigger: GGAGCATCCGAGTGTCACTCAGCTGCTGCGCAGAAG...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAATTTGCCCAAACACATTaGTCCCACCTGCGTGGCTCC +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMEFAQTH*SHLRGS
Trigger: GGAGCCACGCAGGTGGGATCAATGTGTTTGGGCAAA...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTGATATCCATTCTGAATaGAGACATCTGGCGGGCAGA +
Preference number: 4 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVDIHSE*RHLAGR
Trigger: TCTGCCCGCCAGATGTCTTCATTCAGAATGGATATC...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTCAAGGATATCCATTCTaGATGAAGACATCTGGCGGG +
Preference number: 4 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVQGYPF*MKTSGG
Trigger: CCCGCCAGATGTCTTCATTCAGAATGGATATCCTTG...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTAGTCTGTTCCAAGTCTaGTCGCCCGGCCTCGAGGAC +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFSLFQV*SPGLED
Trigger: GTCCTCGAGGCCGGGCGACCAGACTTGGAACAGACT...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGATCTTCCCTCTGCACATaGAGCCTCCTGGAAGGAACT +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGSSLCT*SLLEGT
Trigger: AGTTCCTTCCAGGAGGCTCCATGTGCAGAGGGAAGA...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAACAGCGCGTTCCCAGTaGCACACTTCTTGTACTCAC +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGTARSQ*HTSCTH
Trigger: GTGAGTACAAGAAGTGTGCCACTGGGAACGCGCTGT...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAATTTGGGCCCCCTGGTaGTCTGGAGATACTAGGATC +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGIWAPW*SGDTRI
Trigger: GATCCTAGTATCTCCAGACCACCAGGGGGCCCAAAT...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTGTTTCCATGCCCAGGTaGCGGTCTGGAGACACCTGG +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFVSMPR*RSGDTW
Trigger: CCAGGTGTCTCCAGACCGCCACCTGGGCATGGAAAC...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084032.6
ENSMUST00000208247.3
3UTR CAA 72 bp CATGAATTCTCAAGTGGTTTGGTAACACCTCAACTGTaGGAAGTATTCTCCCTGCTCCTGTTCGATCGACAC +
Preference number: 4 (lower is better)
Translates to: HEFSSGLVTPQL*EVFSLLLFDRH
Trigger: GTGTCGATCGAACAGGAGCAGGGAGAATACTTCCAACAGTTGAGGTGTTACCAAACCACTTGAGAATTCATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGACCTTGTCTACAACAATaGACAGCTCCACATAGCGGG +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGPCLQQ*TAPHSG
Trigger: CCCGCTATGTGGAGCTGTTCATTGTTGTAGACAAGG...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTATGCTCCTGAATTCATaGTACAGCTCTTTGCTCCAC +
Preference number: 4 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVMLLNS*YSSLLH
Trigger: GTGGAGCAAAGAGCTGTATCATGAATTCAGGAGCAT...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAACCTCATCCCCCTGTGTaGCTTCCTTCTCTGTGTCCC +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQPHPPV*LPSLCP
Trigger: GGGACACAGAGAAGGAAGGCACACAGGGGGATGAGG...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAGCCACTGAACAAAGTTaGCCAGCACATCTCCAGCTC +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMEATEQS*PAHLQL
Trigger: GAGCTGGAGATGTGCTGGGCAACTTTGTTCAGTGGC...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTGTCTCCACAGTGATTTaGCCAAACACATTGATCCCA +
Preference number: 4 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVVSTVI*PNTLIP
Trigger: TGGGATCAATGTGTTTGGGCAAATCACTGTGGAGAC...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTGGGAATCTGTTTCCATaGCCAGGTGGCGGTCTGGAG +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFGNLFP*PGGGLE
Trigger: CTCCAGACCGCCACCTGGGCATGGAAACAGATTCCC...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084032.6
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAATCTCTCACAGCAGTCTaGTTCCGTCCCATCATGTCG +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMESLTAV*FRPIMS
Trigger: CGACATGATGGGACGGAACCAGACTGCTGTGAGAGA...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACTCTCTCACAGCAGTCTaGTTCCGTCCCATCATGTCG +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHSLTAV*FRPIMS
Trigger: CGACATGATGGGACGGAACCAGACTGCTGTGAGAGA...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAGCACATGGAGCCTCCTaGAAGGAACTGGCAATCTTT +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGAHGAS*KELAIF
Trigger: AAAGATTGCCAGTTCCTTCCAGGAGGCTCCATGTGC...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGACAGCGCGTTCCCAGTaGCACACTTCTTGTACTCAC +
Preference number: 4 (lower is better)
Translates to: NCGSCVSSFEISASLCIKTARSQ*HTSCTH
Trigger: GTGAGTACAAGAAGTGTGCCACTGGGAACGCGCTGT...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAACCACACCCCAGCATTTaGTGCCTCGACTGGGTGTCT +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQPHPSI*CLDWVS
Trigger: AGACACCCAGTCGAGGCACCAAATGCTGGGGTGTGG...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGACGTCGGAACCAAGCTaGAAATCCACACCCCAGCAT +
Preference number: 4 (lower is better)
Translates to: NCGSCVSSFEISASLCIKTSEPS*KSTPQH
Trigger: ATGCTGGGGTGTGGATTTCCAGCTTGGTTCCGACGT...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGATTCCTCCATATCCTTTaGTGTCACAGTGTGGGGGAG +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGFLHIL*CHSVGE
Trigger: CTCCCCCACACTGTGACACCAAAGGATATGGAGGAA...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACATTTGGGCCCCCTGGTaGTCTGGAGATACTAGGATC +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHIWAPW*SGDTRI
Trigger: GATCCTAGTATCTCCAGACCACCAGGGGGCCCAAAT...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGATATGTGCTCAAAGTGTaGGCTGTTGTGCAGAGGTTC +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGYVLKV*AVVQRF
Trigger: GAACCTCTGCACAACAGCTCACACTTTGAGCACATA...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACCCTTGTCTACAACAATaGACAGCTCCACATAGCGGG +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHPCLQQ*TAPHSG
Trigger: CCCGCTATGTGGAGCTGTTCATTGTTGTAGACAAGG...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGAACTTTTCCCGCCACTaGACAAAGTTGCCCAGCACA +
Preference number: 4 (lower is better)
Translates to: NCGSCVSSFEISASLCIKNFSRH*TKLPST
Trigger: TGTGCTGGGCAACTTTGTTCAGTGGCGGGAAAAGTT...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAACCTGCGTGGCTCCTTaGACATACTGTTCCTACAAA +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGTCVAP*TYCSYK
Trigger: TTTGTAGGAACAGTATGTTCAAGGAGCCACGCAGGT...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAATTTGCCCAAACACATTaGTCCCACCTGCGTGGCTCC +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQFAQTH*SHLRGS
Trigger: GGAGCCACGCAGGTGGGATCAATGTGTTTGGGCAAA...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTTCTCTCCCATCATCATaGTTCATTCCAAGGTTATGC +
Preference number: 4 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVSLPSS*FIPRLC
Trigger: GCATAACCTTGGAATGAATCATGATGATGGGAGAGA...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAGATATCCATTCTGAATaGAGACATCTGGCGGGCAGA +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGDIHSE*RHLAGR
Trigger: TCTGCCCGCCAGATGTCTTCATTCAGAATGGATATC...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAATGTACATTCTCGCATTaGAGCTTTCCACACAGCGCG +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMECTFSH*SFPHSA
Trigger: CGCGCTGTGTGGAAAGCTTCAATGCGAGAATGTACA...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTCTAGAGACGTTTGCTTaGTTTCTGCCATCTGACATT +
Preference number: 4 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVLETFA*FLPSDI
Trigger: AATGTCAGATGGCAGAAATCAAGCAAACGTCTCTAG...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAACTGGCATTCTCCAAATaGAGCAAGCCTCTGAGTCCA +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMELAFSK*SKPLSP
Trigger: TGGACTCAGAGGCTTGCTGCATTTGGAGAATGCCAG...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGCTGGCATTCTCCAAATaGAGCAAGCCTCTGAGTCCA +
Preference number: 4 (lower is better)
Translates to: NCGSCVSSFEISASLCIKLAFSK*SKPLSP
Trigger: TGGACTCAGAGGCTTGCTGCATTTGGAGAATGCCAG...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAGAGGCTCCTGGTGGATaGCATCCATGGGGTAAAATA +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMEEAPGG*HPWGKI
Trigger: TATTTTACCCCATGGATGGCATCCACCAGGAGCCTC...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTAATTCCTGCAAATCTTaGCAGCATCACATTTGGTGC +
Preference number: 4 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVNSCKS*QHHIWC
Trigger: GCACCAAATGTGATGCTGGCAAGATTTGCAGGAATT...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTCACACTGAAAATTCCTaGAAATCTTGCCAGCATCAC +
Preference number: 4 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVHTENS*KSCQHH
Trigger: GTGATGCTGGCAAGATTTGCAGGAATTTTCAGTGTG...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAAGGGAATCTGTTTCCATaGCCAGGTGGTGGTCTGGAG +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQGNLFP*PGGGLE
Trigger: CTCCAGACCACCACCTGGGCATGGAAACAGATTCCC...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084035.12
CDS-3UTR CCA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGGCACATGGAGCCTCCTaGAAGGAACTGGCAATCTTT +
Preference number: 4 (lower is better)
Translates to: NCGSCVSSFEISASLCIKAHGAS*KELAIF
Trigger: AAAGATTGCCAGTTCCTTCCAGGAGGCTCCATGTGC...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAGAACATCACACTCACTaGTCTTCCCTCTGCACATGG +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMEEHHTH*SSLCTW
Trigger: CCATGTGCAGAGGGAAGACCAGTGAGTGTGATGTTC...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAACTGAATGAAGACATCTaGCGGGCAGAACTGAGAGGA +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMELNEDI*RAELRG
Trigger: TCCTCTCAGTTCTGCCCGCCAGATGTCTTCATTCAG...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAATTCCTCCATATCCTTTaGTGTCACAGTGTGGGGGAG +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMEFLHIL*CHSVGE
Trigger: CTCCCCCACACTGTGACACCAAAGGATATGGAGGAA...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGTATGTGCTCAAAGTGTaGGCTGTTGTGCAGAGGTTC +
Preference number: 4 (lower is better)
Translates to: NCGSCVSSFEISASLCIKYVLKV*AVVQRF
Trigger: GAACCTCTGCACAACAGCTCACACTTTGAGCACATA...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACACCTGCGTGGCTCCTTaGACATACTGTTCCTACAAA +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHTCVAP*TYCSYK
Trigger: TTTGTAGGAACAGTATGTTCAAGGAGCCACGCAGGT...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACCTGCGTGGCTCCTTaGACATACTGTTCCTACAAA +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMETCVAP*TYCSYK
Trigger: TTTGTAGGAACAGTATGTTCAAGGAGCCACGCAGGT...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACGATATCCATTCTGAATaGAGACATCTGGCGGGCAGA +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHDIHSE*RHLAGR
Trigger: TCTGCCCGCCAGATGTCTTCATTCAGAATGGATATC...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGCAAGGATATCCATTCTaGATGAAGACATCTGGCGGG +
Preference number: 4 (lower is better)
Translates to: NCGSCVSSFEISASLCIKQGYPF*MKTSGG
Trigger: CCCGCCAGATGTCTTCATTCAGAATGGATATCCTTG...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACCAAGGATATCCATTCTaGATGAAGACATCTGGCGGG +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHQGYPF*MKTSGG
Trigger: CCCGCCAGATGTCTTCATTCAGAATGGATATCCTTG...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACCCTCGACTGGGTGTCTaGATGATAGCTGGTACTATT +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHPRLGV*MIAGTI
Trigger: AATAGTACCAGCTATCATTCAGACACCCAGTCGAGG...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAAGCCACTGAACAAAGTTaGCCAGCACATCTCCAGCTC +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQATEQS*PAHLQL
Trigger: GAGCTGGAGATGTGCTGGGCAACTTTGTTCAGTGGC...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGATACAAACGCCATTCCTaGAGTTCCACCAAAGCCTTT +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGYKRHS*SSTKAF
Trigger: AAAGGCTTTGGTGGAACTGCAGGAATGGCGTTTGTA...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAGTCTCCACAGTGATTTaGCCAAACACATTGATCCCA +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGVSTVI*PNTLIP
Trigger: TGGGATCAATGTGTTTGGGCAAATCACTGTGGAGAC...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGATGTAGCAGTAGGCTTTaGTGTTCTGGCAAGGATATC +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGCSSRL*CSGKDI
Trigger: GATATCCTTGCCAGAACAGCAAAGCCTACTGCTACA...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGACTTCTTGTACTCACTaGCGGAGAAACCACAGTTGC +
Preference number: 4 (lower is better)
Translates to: NCGSCVSSFEISASLCIKTSCTH*RRNHSC
Trigger: GCAACTGTGGTTTCTCCGGCAGTGAGTACAAGAAGT...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGCCTCCTGGAAGGAACTaGCAATCTTTACAACAGTCG +
Preference number: 4 (lower is better)
Translates to: NCGSCVSSFEISASLCIKPPGRN*QSLQQS
Trigger: CGACTGTTGTAAAGATTGCCAGTTCCTTCCAGGAGG...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAACCTCCTGGAAGGAACTaGCAATCTTTACAACAGTCG +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMEPPGRN*QSLQQS
Trigger: CGACTGTTGTAAAGATTGCCAGTTCCTTCCAGGAGG...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAATCTTCCCTCTGCACATaGAGCCTCCTGGAAGGAACT +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQSSLCT*SLLEGT
Trigger: AGTTCCTTCCAGGAGGCTCCATGTGCAGAGGGAAGA...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTTCTTCCCTCTGCACATaGAGCCTCCTGGAAGGAACT +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFSSLCT*SLLEGT
Trigger: AGTTCCTTCCAGGAGGCTCCATGTGCAGAGGGAAGA...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACAGCGCGTTCCCAGTaGCACACTTCTTGTACTCAC +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFTARSQ*HTSCTH
Trigger: GTGAGTACAAGAAGTGTGCCACTGGGAACGCGCTGT...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAAACGTCGGAACCAAGCTaGAAATCCACACCCCAGCAT +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQTSEPS*KSTPQH
Trigger: ATGCTGGGGTGTGGATTTCCAGCTTGGTTCCGACGT...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGTGCCAGCATCACATTTaGTGCCTTCATTCACCATCC +
Preference number: 4 (lower is better)
Translates to: NCGSCVSSFEISASLCIKCQHHI*CLHSPS
Trigger: GGATGGTGAATGAAGGCACCAAATGTGATGCTGGCA...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
3UTR CAA 72 bp AAGTTGCCCAGCACATCTCCAGCTCCTCCAATTATATaGATAGGATTTCTGTCTGTCCAAATTTCTAGTCCA +
Preference number: 4 (lower is better)
Translates to: KLPSTSPAPPII*IGFLSVQISSP
Trigger: TGGACTAGAAATTTGGACAGACAGAAATCCTATCAATATAATTGGAGGAGCTGGAGATGTGCTGGGCAACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211319.2
CDS-3UTR TCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAAAACTTTTCCCGCCACTaGACAAAGTTGCCCAGCACA +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQNFSRH*TKLPST
Trigger: TGTGCTGGGCAACTTTGTTCAGTGGCGGGAAAAGTT...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACATGCTCCTGAATTCATaGTACAGCTCTTTGCTCCAC +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHMLLNS*YSSLLH
Trigger: GTGGAGCAAAGAGCTGTATCATGAATTCAGGAGCAT...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTTGTACATTCTCGCATTaGAGCTTTCCACACAGCGCG +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFCTFSH*SFPHSA
Trigger: CGCGCTGTGTGGAAAGCTTCAATGCGAGAATGTACA...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACTGTAGCAGTAGGCTTTaGTGTTCTGGCAAGGATATC +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHCSSRL*CSGKDI
Trigger: GATATCCTTGCCAGAACAGCAAAGCCTACTGCTACA...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAGTGACAATTCTTATTaGTGTTACACACCCCATGGC +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGSDNSY*CYTPHG
Trigger: GCCATGGGGTGTGTAACAGCAATAAGAATTGTCACT...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAAGAACATCACACTCACTaGTCTTCCCTCTGCACATGG +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQEHHTH*SSLCTW
Trigger: CCATGTGCAGAGGGAAGACCAGTGAGTGTGATGTTC...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTCTGAATGAAGACATCTaGCGGGCAGAACTGAGAGGA +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFLNEDI*RAELRG
Trigger: TCCTCTCAGTTCTGCCCGCCAGATGTCTTCATTCAG...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTTTCCTCCATATCCTTTaGTGTCACAGTGTGGGGGAG +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFFLHIL*CHSVGE
Trigger: CTCCCCCACACTGTGACACCAAAGGATATGGAGGAA...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAATCTCTCCCATCATCATaGTTCATTCCAAGGTTATGC +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMESLPSS*FIPRLC
Trigger: GCATAACCTTGGAATGAATCATGATGATGGGAGAGA...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAACCTCGACTGGGTGTCTaGATGATAGCTGGTACTATT +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQPRLGV*MIAGTI
Trigger: AATAGTACCAGCTATCATTCAGACACCCAGTCGAGG...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGACATAATATTGGCACATaGCATTGTAGCAGTAGGCTT +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGHNIGT*HCSSRL
Trigger: AAGCCTACTGCTACAATGGCATGTGCCAATATTATG...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACTTCTTGTACTCACTaGCGGAGAAACCACAGTTGC +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFTSCTH*RRNHSC
Trigger: GCAACTGTGGTTTCTCCGGCAGTGAGTACAAGAAGT...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACAATTCCTGCAAATCTTaGCAGCATCACATTTGGTGC +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHNSCKS*QHHIWC
Trigger: GCACCAAATGTGATGCTGGCAAGATTTGCAGGAATT...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAACACACTGAAAATTCCTaGAAATCTTGCCAGCATCAC +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMEHTENS*KSCQHH
Trigger: GTGATGCTGGCAAGATTTGCAGGAATTTTCAGTGTG...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGAGTGACAATTCTTATTaGTGTTACACACCCCATGGC +
Preference number: 4 (lower is better)
Translates to: NCGSCVSSFEISASLCIKSDNSY*CYTPHG
Trigger: GCCATGGGGTGTGTAACAGCAATAAGAATTGTCACT...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAAGTGACAATTCTTATTaGTGTTACACACCCCATGGC +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMESDNSY*CYTPHG
Trigger: GCCATGGGGTGTGTAACAGCAATAAGAATTGTCACT...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTCCTCCTGGAAGGAACTaGCAATCTTTACAACAGTCG +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFPPGRN*QSLQQS
Trigger: CGACTGTTGTAAAGATTGCCAGTTCCTTCCAGGAGG...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAATGCCAGCATCACATTTaGTGCCTTCATTCACCATCC +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQCQHHI*CLHSPS
Trigger: GGATGGTGAATGAAGGCACCAAATGTGATGCTGGCA...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTTGCCAGCATCACATTTaGTGCCTTCATTCACCATCC +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFCQHHI*CLHSPS
Trigger: GGATGGTGAATGAAGGCACCAAATGTGATGCTGGCA...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGATTCGAATGTTTAACATaGTGTACATGCTATCCAGGT +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGFECLT*CTCYPG
Trigger: ACCTGGATAGCATGTACATCATGTTAAACATTCGAA...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAATTATGCCCCAATTCATaGGCAACAATGGATGCAAAT +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMELCPNS*ATMDAN
Trigger: ATTTGCATCCATTGTTGCTCATGAATTGGGGCATAA...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGTTATGCCCCAATTCATaGGCAACAATGGATGCAAAT +
Preference number: 4 (lower is better)
Translates to: NCGSCVSSFEISASLCIKLCPNS*ATMDAN
Trigger: ATTTGCATCCATTGTTGCTCATGAATTGGGGCATAA...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAAATGCTCCTGAATTCATaGTACAGCTCTTTGCTCCAC +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQMLLNS*YSSLLH
Trigger: GTGGAGCAAAGAGCTGTATCATGAATTCAGGAGCAT...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAGAAGCATTTACACACTaGAAATTCCTGCAAATCTTG +
Preference number: 4 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGEAFTH*KFLQIL
Trigger: CAAGATTTGCAGGAATTTTCAGTGTGTAAATGCTTC...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACGGAATCAAGTTTCCCTaGGAAGATATTTTCGGTTGT +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHGIKFP*EDIFGC
Trigger: ACAACCGAAAATATCTTCTCAGGGAAACTTGATTCC...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp CAAATTTCTAGTCCAACCAGCACAATTCGAATGTTTAACATGATGTACATGCTATGTGACGTCACTCCGTaGCAATGTCTTAACAACAGA +
Preference number: 4 (lower is better)
Translates to: QISSPTSTIRMFNMMYMLCDVTP*QCLNNR
Trigger: TCTGTTGTTAAGACATTGTCACGGAGTGACGTCACA...TAGCATGTACATCATGTTAAACATTCGAATTGTGCTGGTTGGACTAGAAATTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211319.2
CDS-3UTR GCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAATACAAACGCCATTCCTaGAGTTCCACCAAAGCCTTT +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQYKRHS*SSTKAF
Trigger: AAAGGCTTTGGTGGAACTGCAGGAATGGCGTTTGTA...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTTACAAACGCCATTCCTaGAGTTCCACCAAAGCCTTT +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFYKRHS*SSTKAF
Trigger: AAAGGCTTTGGTGGAACTGCAGGAATGGCGTTTGTA...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAATGTAGCAGTAGGCTTTaGTGTTCTGGCAAGGATATC +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQCSSRL*CSGKDI
Trigger: GATATCCTTGCCAGAACAGCAAAGCCTACTGCTACA...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGCATAATATTGGCACATaGCATTGTAGCAGTAGGCTT +
Preference number: 4 (lower is better)
Translates to: NCGSCVSSFEISASLCIKHNIGT*HCSSRL
Trigger: AAGCCTACTGCTACAATGGCATGTGCCAATATTATG...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAACGTTTGCTTGATTTCTaGCATCTGACATTTGTGATC +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMERLLDF*HLTFVI
Trigger: GATCACAAATGTCAGATGGCAGAAATCAAGCAAACG...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAGTTCAATTCCAAAACTaGCATTCTCCAAATGCAGCA +
Preference number: 4 (lower is better)
Translates to: TSSALNPQMARENILTMEVQFQN*HSPNAA
Trigger: TGCTGCATTTGGAGAATGCCAGTTTTGGAATTGAAC...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACGAAGCATTTACACACTaGAAATTCCTGCAAATCTTG +
Preference number: 4 (lower is better)
Translates to: NPQMARENILTMETFTLHEAFTH*KFLQIL
Trigger: CAAGATTTGCAGGAATTTTCAGTGTGTAAATGCTTC...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAAGTGATCTCTTCTTCCTaGAGGTTTTCCGTAGTTCAT +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQVISSS*RFSVVH
Trigger: ATGAACTACGGAAAACCTTCAGGAAGAAGAGATCAC...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTGTGATCTCTTCTTCCTaGAGGTTTTCCGTAGTTCAT +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFVISSS*RFSVVH
Trigger: ATGAACTACGGAAAACCTTCAGGAAGAAGAGATCAC...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTCTAGAGACGTTTGCTTaGTTTCTGCCATCTGACATT +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFLETFA*FLPSDI
Trigger: AATGTCAGATGGCAGAAATCAAGCAAACGTCTCTAG...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAACTAGAGACGTTTGCTTaGTTTCTGCCATCTGACATT +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQLETFA*FLPSDI
Trigger: AATGTCAGATGGCAGAAATCAAGCAAACGTCTCTAG...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAAAATTCCTGCAAATCTTaGCAGCATCACATTTGGTGC +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQNSCKS*QHHIWC
Trigger: GCACCAAATGTGATGCTGGCAAGATTTGCAGGAATT...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTCACACTGAAAATTCCTaGAAATCTTGCCAGCATCAC +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFHTENS*KSCQHH
Trigger: GTGATGCTGGCAAGATTTGCAGGAATTTTCAGTGTG...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAAGGAATCAAGTTTCCCTaGGAAGATATTTTCGGTTGT +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQGIKFP*EDIFGC
Trigger: ACAACCGAAAATATCTTCTCAGGGAAACTTGATTCC...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTCATAATATTGGCACATaGCATTGTAGCAGTAGGCTT +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFHNIGT*HCSSRL
Trigger: AAGCCTACTGCTACAATGGCATGTGCCAATATTATG...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTCGTTTGCTTGATTTCTaGCATCTGACATTTGTGATC +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFRLLDF*HLTFVI
Trigger: GATCACAAATGTCAGATGGCAGAAATCAAGCAAACG...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR GCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAACGTTTGCTTGATTTCTaGCATCTGACATTTGTGATC +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQRLLDF*HLTFVI
Trigger: GATCACAAATGTCAGATGGCAGAAATCAAGCAAACG...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTGTTCAATTCCAAAACTaGCATTCTCCAAATGCAGCA +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFVQFQN*HSPNAA
Trigger: TGCTGCATTTGGAGAATGCCAGTTTTGGAATTGAAC...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTTTCGAATGTTTAACATaGTGTACATGCTATCCAGGT +
Preference number: 4 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFFECLT*CTCYPG
Trigger: ACCTGGATAGCATGTACATCATGTTAAACATTCGAA...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR TCA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAAGAAGCATTTACACACTaGAAATTCCTGCAAATCTTG +
Preference number: 4 (lower is better)
Translates to: VNTCSNGQPETINGNWGQEAFTH*KFLQIL
Trigger: CAAGATTTGCAGGAATTTTCAGTGTGTAAATGCTTC...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
3UTR CAA 72 bp GCTGTTAATCCATGCAAGATGAAAATGCAGACGTTATaGGCAATTAGTCTTCCTAAGTTAATACATGTTCAA +
Preference number: 4 (lower is better)
Translates to: AVNPCKMKMQTL*AISLPKLIHVQ
Trigger: TTGAACATGTATTAACTTAGGAAGACTAATTGCCAATAACGTCTGCATTTTCATCTTGCATGGATTAACAGC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 90 bp CTTGGCGGCGTAGGTTGGTACTGGGAATCTGTTTCCATGCCCAGGTaGCGGTCTGGAGACACCTGGGCCCCCTGGCGGTCTGGAGACACC +
Preference number: 5 (lower is better)
Translates to: LGGVGWYWESVSMPR*RSGDTWAPWRSGDT
Trigger: GGTGTCTCCAGACCGCCAGGGGGCCCAGGTGTCTCCAGACCGCCACCTGGGCATGGAAACAGATTCCCAGTACCAACCTACGCCGCCAAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208247.3
CDS CCA 90 bp TACTGGGAATCTGTTTCCATGCCCAGGTGGTGGTCTGGAGACACCTaGGCCCCCTGGTGGTCTGGAGACACCTGGGCCCCCTGGTGGTCT +
Preference number: 5 (lower is better)
Translates to: YWESVSMPRWWSGDT*APWWSGDTWAPWWS
Trigger: AGACCACCAGGGGGCCCAGGTGTCTCCAGACCACCAGGGGGCCCAGGTGTCTCCAGACCACCACCTGGGCATGGAAACAGATTCCCAGTA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000084035.12
CDS CCA 90 bp GGCGGCGTAGGTTGGTACTGGGAATCTGTTTCCATGCCCAGGTGGTaGTCTGGAGACACCTGGGCCCCCTGGTGGTCTGGAGACACCTGG +
Preference number: 5 (lower is better)
Translates to: GGVGWYWESVSMPRW*SGDTWAPWWSGDTW
Trigger: CCAGGTGTCTCCAGACCACCAGGGGGCCCAGGTGTCTCCAGACCACCACCTGGGCATGGAAACAGATTCCCAGTACCAACCTACGCCGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084035.12
CDS CCA 90 bp CTTGGCGGCGTAGGTTGGTACTGGGAATCTGTTTCCATGCCCAGGTaGTGGTCTGGAGACACCTGGGCCCCCTGGTGGTCTGGAGACACC +
Preference number: 5 (lower is better)
Translates to: LGGVGWYWESVSMPR*WSGDTWAPWWSGDT
Trigger: GGTGTCTCCAGACCACCAGGGGGCCCAGGTGTCTCCAGACCACCACCTGGGCATGGAAACAGATTCCCAGTACCAACCTACGCCGCCAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084035.12
CDS CCA 90 bp GACACCTGGGCCCCCTGGTGGTCTGGAGACATTTGGGCCCCCTGGTaGTCTGGAGATACTAGGATCTCCTGGCTGTCTAGAGACGTTTGC +
Preference number: 5 (lower is better)
Translates to: DTWAPWWSGDIWAPW*SGDTRISWLSRDVC
Trigger: GCAAACGTCTCTAGACAGCCAGGAGATCCTAGTATCTCCAGACCACCAGGGGGCCCAAATGTCTCCAGACCACCAGGGGGCCCAGGTGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 90 bp GGAGACACCTGGGCCCCCTGGTGGTCTGGAGACATTTGGGCCCCCTaGTGGTCTGGAGATACTAGGATCTCCTGGCTGTCTAGAGACGTT +
Preference number: 5 (lower is better)
Translates to: GDTWAPWWSGDIWAP*WSGDTRISWLSRDV
Trigger: AACGTCTCTAGACAGCCAGGAGATCCTAGTATCTCCAGACCACCAGGGGGCCCAAATGTCTCCAGACCACCAGGGGGCCCAGGTGTCTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS TCA 90 bp AGCGGGTCTGTGGTAGAACAGCTCTTCTTCTGCGCAGCAGCTGAGTaGCACTCGGATGCTCCTCCTCATCCCCCTGTGTGCCTTCCTTCT +
Preference number: 5 (lower is better)
Translates to: SGSVVEQLFFCAAAE*HSDAPPHPPVCLPS
Trigger: AGAAGGAAGGCACACAGGGGGATGAGGAGGAGCATCCGAGTGTCACTCAGCTGCTGCGCAGAAGAAGAGCTGTTCTACCACAGACCCGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
ENSMUST00000211319.2
CDS GCA 90 bp AAGTGCTTCCTTCACAGCATGGGTCCACCTCACACTCCTTCGCTGTaGCGCAGTCACACTCCTCTCCAGGGTCCACCAGCTTATTACCAC +
Preference number: 5 (lower is better)
Translates to: KCFLHSMGPPHTPSL*RSHTPLQGPPAYYH
Trigger: GTGGTAATAAGCTGGTGGACCCTGGAGAGGAGTGTGACTGCGGCACAGCGAAGGAGTGTGAGGTGGACCCATGCTGTGAAGGAAGCACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS GCA 90 bp GGACGATTAGGAAGAAGAAGACCAGAAGCCCGTCCCTCAGTGCTGTaGTCTTTGCATTATACGTCGGCCCGCTGTCCACGCTTCCTCCAT +
Preference number: 5 (lower is better)
Translates to: GRLGRRRPEARPSVL*SLHYTSARCPRFLH
Trigger: ATGGAGGAAGCGTGGACAGCGGGCCGACGTATAATGCAAAGAGCACAGCACTGAGGGACGGGCTTCTGGTCTTCTTCTTCCTAATCGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS GCA 90 bp GAGCTGTTGTGCAGAGGTTCAATTCCAAAACTGGCATTCTCCAAATaGAGCAAGCCTCTGAGTCCAAAGCAGGCGCTCACAGCAACCGCG +
Preference number: 5 (lower is better)
Translates to: ELLCRGSIPKLAFSK*SKPLSPKQALTATA
Trigger: CGCGGTTGCTGTGAGCGCCTGCTTTGGACTCAGAGGCTTGCTGCATTTGGAGAATGCCAGTTTTGGAATTGAACCTCTGCACAACAGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
ENSMUST00000211319.2
CDS CCA 90 bp CTTGCCAGCATCACATTTGGTGCCTTCATTCACCATCCCTGGGTCTaGAACGTCGGAACCAAGCTGGAAATCCACACCCCAGCATTTGGT +
Preference number: 5 (lower is better)
Translates to: LASITFGAFIHHPWV*NVGTKLEIHTPAFG
Trigger: ACCAAATGCTGGGGTGTGGATTTCCAGCTTGGTTCCGACGTTCCAGACCCAGGGATGGTGAATGAAGGCACCAAATGTGATGCTGGCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS TCA 90 bp GAGGTTCAATTCCAAAACTGGCATTCTCCAAATGCAGCAAGCCTCTaGGTCCAAAGCAGGCGCTCACAGCAACCGCGGAATTCTGCACTC +
Preference number: 5 (lower is better)
Translates to: EVQFQNWHSPNAASL*VQSRRSQQPRNSAL
Trigger: GAGTGCAGAATTCCGCGGTTGCTGTGAGCGCCTGCTTTGGACTCAGAGGCTTGCTGCATTTGGAGAATGCCAGTTTTGGAATTGAACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
ENSMUST00000211319.2
CDS CCA 90 bp GCACTCCCTCCACATAGCCTCGATAGTGACAATGGCTCTGTACGTTaGGATGGTCAGAGAGTAGGGAGCCTTCCTTGTCGTAGGTGTAAA +
Preference number: 5 (lower is better)
Translates to: ALPPHSLDSDNGSVR*DGQRVGSLPCRRCK
Trigger: TTTACACCTACGACAAGGAAGGCTCCCTACTCTCTGACCATCCCAACGTACAGAGCCATTGTCACTATCGAGGCTATGTGGAGGGAGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS TCA 90 bp GCTGGTACTATTCCAAACACCGGCATGTCCTGTACATTCTCGCATTaGAGCTTTCCACACAGCGCGTTCCCAGTGGCACACTTCTTGTAC +
Preference number: 5 (lower is better)
Translates to: AGTIPNTGMSCTFSH*SFPHSAFPVAHFLY
Trigger: GTACAAGAAGTGTGCCACTGGGAACGCGCTGTGTGGAAAGCTTCAATGCGAGAATGTACAGGACATGCCGGTGTTTGGAATAGTACCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS TCA 90 bp AGCTGGAAATCCACACCCCAGCATTTGGTGCCTCGACTGGGTGTCTaGATGATAGCTGGTACTATTCCAAACACCGGCATGTCCTGTACA +
Preference number: 5 (lower is better)
Translates to: SWKSTPQHLVPRLGV*MIAGTIPNTGMSCT
Trigger: TGTACAGGACATGCCGGTGTTTGGAATAGTACCAGCTATCATTCAGACACCCAGTCGAGGCACCAAATGCTGGGGTGTGGATTTCCAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 90 bp TGCAGTACTCAGGAACATCACACTCACTGGTCTTCCCTCTGCACATaGAGCCTCCTGGAAGGAACTGGCAATCTTTACAACAGTCGCCAT +
Preference number: 5 (lower is better)
Translates to: CSTQEHHTHWSSLCT*SLLEGTGNLYNSRH
Trigger: ATGGCGACTGTTGTAAAGATTGCCAGTTCCTTCCAGGAGGCTCCATGTGCAGAGGGAAGACCAGTGAGTGTGATGTTCCTGAGTACTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 90 bp CACACCCCAGCATTTGGTGCCTCGACTGGGTGTCTGAATGATAGCTaGTACTATTCCAAACACCGGCATGTCCTGTACATTCTCGCATTG +
Preference number: 5 (lower is better)
Translates to: HTPAFGASTGCLNDS*YYSKHRHVLYILAL
Trigger: CAATGCGAGAATGTACAGGACATGCCGGTGTTTGGAATAGTACCAGCTATCATTCAGACACCCAGTCGAGGCACCAAATGCTGGGGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS GCA 90 bp AACCGTTGCAGTACTCAGGAACATCACACTCACTGGTCTTCCCTCTaGACATGGAGCCTCCTGGAAGGAACTGGCAATCTTTACAACAGT +
Preference number: 5 (lower is better)
Translates to: NRCSTQEHHTHWSSL*TWSLLEGTGNLYNS
Trigger: ACTGTTGTAAAGATTGCCAGTTCCTTCCAGGAGGCTCCATGTGCAGAGGGAAGACCAGTGAGTGTGATGTTCCTGAGTACTGCAACGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 90 bp GGCTTTGCTGTTCTGGCAAGGATATCCATTCTGAATGAAGACATCTaGCGGGCAGAACTGAGAGGAACCGTTGCAGTACTCAGGAACATC +
Preference number: 5 (lower is better)
Translates to: GFAVLARISILNEDI*RAELRGTVAVLRNI
Trigger: GATGTTCCTGAGTACTGCAACGGTTCCTCTCAGTTCTGCCCGCCAGATGTCTTCATTCAGAATGGATATCCTTGCCAGAACAGCAAAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS TCA 90 bp TCTGGTTCCGTCCCATCATGTCGTACCTTTCCTTGTCTACAACAATaGACAGCTCCACATAGCGGGTCTGTGGTAGAACAGCTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: SGSVPSCRTFPCLQQ*TAPHSGSVVEQLFF
Trigger: GAAGAAGAGCTGTTCTACCACAGACCCGCTATGTGGAGCTGTTCATTGTTGTAGACAAGGAAAGGTACGACATGATGGGACGGAACCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAGTGGTCTGGAGACATTaGGGCCCCCTGGTGGTCTGG +
Preference number: 5 (lower is better)
Translates to: TSSALNPQMARENILTMEVVWRH*GPLVVW
Trigger: CCAGACCACCAGGGGGCCCAAATGTCTCCAGACCAC...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTGCTTGGCGGCGTAGGTaGGTACTGGGAATCTGTTTC +
Preference number: 5 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVAWRRR*VLGICF
Trigger: GAAACAGATTCCCAGTACCAACCTACGCCGCCAAGC...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS TCA 90 bp GGCAATCTTTACAACAGTCGCCATATGCACACTCAGCAAATGACTTaGGCTTACAAGTGCTTCCTTCACAGCATGGGTCCACCTCACACT +
Preference number: 5 (lower is better)
Translates to: GNLYNSRHMHTQQMT*AYKCFLHSMGPPHT
Trigger: AGTGTGAGGTGGACCCATGCTGTGAAGGAAGCACTTGTAAGCTCAAGTCATTTGCTGAGTGTGCATATGGCGACTGTTGTAAAGATTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS TCA 90 bp GAACTGGCAATCTTTACAACAGTCGCCATATGCACACTCAGCAAATaGCTTGAGCTTACAAGTGCTTCCTTCACAGCATGGGTCCACCTC +
Preference number: 5 (lower is better)
Translates to: ELAIFTTVAICTLSK*LELTSASFTAWVHL
Trigger: GAGGTGGACCCATGCTGTGAAGGAAGCACTTGTAAGCTCAAGTCATTTGCTGAGTGTGCATATGGCGACTGTTGTAAAGATTGCCAGTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACTCCACACCCCAGCATTaGGTGCCTCGACTGGGTGTC +
Preference number: 5 (lower is better)
Translates to: NPQMARENILTMETFTLHSTPQH*VPRLGV
Trigger: GACACCCAGTCGAGGCACCAAATGCTGGGGTGTGGA...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTCTTCCTCCATATCCTTaGGTGTCACAGTGTGGGGGA +
Preference number: 5 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVLPPYP*VSQCGG
Trigger: TCCCCCACACTGTGACACCAAAGGATATGGAGGAAG...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAAGTGGTCTGGAGACATTaGGGCCCCCTGGTGGTCTGG +
Preference number: 5 (lower is better)
Translates to: VNTCSNGQPETINGNWGQVVWRH*GPLVVW
Trigger: CCAGACCACCAGGGGGCCCAAATGTCTCCAGACCAC...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTGTGGTCTGGAGACATTaGGGCCCCCTGGTGGTCTGG +
Preference number: 5 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFVVWRH*GPLVVW
Trigger: CCAGACCACCAGGGGGCCCAAATGTCTCCAGACCAC...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAGCTTGGCGGCGTAGGTaGGTACTGGGAATCTGTTTC +
Preference number: 5 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGAWRRR*VLGICF
Trigger: GAAACAGATTCCCAGTACCAACCTACGCCGCCAAGC...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTTGTCTCCACAGTGATTaGCCCAAACACATTGATCCC +
Preference number: 5 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVCLHSD*PKHIDP
Trigger: GGGATCAATGTGTTTGGGCAAATCACTGTGGAGACA...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTCCGGAGAAACCACAGTaGCCAAATCTGTCACCTTTA +
Preference number: 5 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVPEKPQ*PNLSPL
Trigger: TAAAGGTGACAGATTTGGCAACTGTGGTTTCTCCGG...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAATCCACACCCCAGCATTaGGTGCCTCGACTGGGTGTC +
Preference number: 5 (lower is better)
Translates to: VNTCSNGQPETINGNWGQSTPQH*VPRLGV
Trigger: GACACCCAGTCGAGGCACCAAATGCTGGGGTGTGGA...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTAATATGCTGTTTTCCTaGGGCCTGGATGACGTAAGA +
Preference number: 5 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVNMLFS*GLDDVR
Trigger: TCTTACGTCATCCAGGCCCAAGGAAAACAGCATATT...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGACACCTGCGTGGCTCCTaGAACATACTGTTCCTACAA +
Preference number: 5 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGHLRGS*NILFLQ
Trigger: TTGTAGGAACAGTATGTTCAAGGAGCCACGCAGGTG...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTCACTCAGCAAATGACTaGAGCTTACAAGTGCTTCCT +
Preference number: 5 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVHSAND*SLQVLP
Trigger: AGGAAGCACTTGTAAGCTCAAGTCATTTGCTGAGTG...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACCCAGTGGCACACTTCTaGTACTCACTGCCGGAGAAA +
Preference number: 5 (lower is better)
Translates to: NPQMARENILTMETFTLHPVAHF*YSLPEK
Trigger: TTTCTCCGGCAGTGAGTACAAGAAGTGTGCCACTGG...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp GTTTCGCAATCCCCACTAGGCTCCTGTGTTAATAAAGCTTGTTTTGTGGTGGTTTGCTATCCAGGTAGTTaGCTAAGCGAATCATCTCTT +
Preference number: 5 (lower is better)
Translates to: VSQSPLGSCVNKACFVVVCYPGS*LSESSL
Trigger: AAGAGATGATTCGCTTAGCAAACTACCTGGATAGCA...AACCACCACAAAACAAGCTTTATTAACACAGGAGCCTAGTGGGGATTGCGAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGCACCTGCGTGGCTCCTaGAACATACTGTTCCTACAA +
Preference number: 5 (lower is better)
Translates to: NCGSCVSSFEISASLCIKHLRGS*NILFLQ
Trigger: TTGTAGGAACAGTATGTTCAAGGAGCCACGCAGGTG...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGATGTCTCCACAGTGATTaGCCCAAACACATTGATCCC +
Preference number: 5 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGCLHSD*PKHIDP
Trigger: GGGATCAATGTGTTTGGGCAAATCACTGTGGAGACA...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGACTGCGCGTCATAATATaGGCACATGCCATTGTAGCA +
Preference number: 5 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGLRVII*AHAIVA
Trigger: TGCTACAATGGCATGTGCCAATATTATGACGCGCAG...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAACTGTACATTCTCGCATaGAAGCTTTCCACACAGCGC +
Preference number: 5 (lower is better)
Translates to: TSSALNPQMARENILTMELYILA*KLSTQR
Trigger: GCGCTGTGTGGAAAGCTTCAATGCGAGAATGTACAG...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTGCTTGGCGGCGTAGGTaGGTACTGGGAATCTGTTTC +
Preference number: 5 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFAWRRR*VLGICF
Trigger: GAAACAGATTCCCAGTACCAACCTACGCCGCCAAGC...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAATATGCTGTTTTCCTaGGGCCTGGATGACGTAAGA +
Preference number: 5 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGNMLFS*GLDDVR
Trigger: TCTTACGTCATCCAGGCCCAAGGAAAACAGCATATT...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGTGTCTCCACAGTGATTaGCCCAAACACATTGATCCC +
Preference number: 5 (lower is better)
Translates to: NCGSCVSSFEISASLCIKCLHSD*PKHIDP
Trigger: GGGATCAATGTGTTTGGGCAAATCACTGTGGAGACA...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGACACTCAGCAAATGACTaGAGCTTACAAGTGCTTCCT +
Preference number: 5 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGHSAND*SLQVLP
Trigger: AGGAAGCACTTGTAAGCTCAAGTCATTTGCTGAGTG...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGCTGCGCGTCATAATATaGGCACATGCCATTGTAGCA +
Preference number: 5 (lower is better)
Translates to: NCGSCVSSFEISASLCIKLRVII*AHAIVA
Trigger: TGCTACAATGGCATGTGCCAATATTATGACGCGCAG...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACCCGGAGAAACCACAGTaGCCAAATCTGTCACCTTTA +
Preference number: 5 (lower is better)
Translates to: NPQMARENILTMETFTLHPEKPQ*PNLSPL
Trigger: TAAAGGTGACAGATTTGGCAACTGTGGTTTCTCCGG...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTCCAGTGGCACACTTCTaGTACTCACTGCCGGAGAAA +
Preference number: 5 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFPVAHF*YSLPEK
Trigger: TTTCTCCGGCAGTGAGTACAAGAAGTGTGCCACTGG...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAACCAGTGGCACACTTCTaGTACTCACTGCCGGAGAAA +
Preference number: 5 (lower is better)
Translates to: VNTCSNGQPETINGNWGQPVAHF*YSLPEK
Trigger: TTTCTCCGGCAGTGAGTACAAGAAGTGTGCCACTGG...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAACTTCCTCCATATCCTTaGGTGTCACAGTGTGGGGGA +
Preference number: 5 (lower is better)
Translates to: VNTCSNGQPETINGNWGQLPPYP*VSQCGG
Trigger: TCCCCCACACTGTGACACCAAAGGATATGGAGGAAG...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGTCAAAGTGTGAGCTGTaGTGCAGAGGTTCAATTCCA +
Preference number: 5 (lower is better)
Translates to: NCGSCVSSFEISASLCIKSKCEL*CRGSIP
Trigger: TGGAATTGAACCTCTGCACAACAGCTCACACTTTGA...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACTCAAAGTGTGAGCTGTaGTGCAGAGGTTCAATTCCA +
Preference number: 5 (lower is better)
Translates to: NPQMARENILTMETFTLHSKCEL*CRGSIP
Trigger: TGGAATTGAACCTCTGCACAACAGCTCACACTTTGA...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp CACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAATGTCGTACCTTTCCTaGTCTACAACAATGAACAGC +
Preference number: 5 (lower is better)
Translates to: HVKCIKSTNGQRKHSNDGMSYLS*STTMNS
Trigger: GCTGTTCATTGTTGTAGACAAGGAAAGGTACGACAT...TCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACCACTCAGCAAATGACTaGAGCTTACAAGTGCTTCCT +
Preference number: 5 (lower is better)
Translates to: NPQMARENILTMETFTLHHSAND*SLQVLP
Trigger: AGGAAGCACTTGTAAGCTCAAGTCATTTGCTGAGTG...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAACTGTACATTCTCGCATaGAAGCTTTCCACACAGCGC +
Preference number: 5 (lower is better)
Translates to: VNTCSNGQPETINGNWGQLYILA*KLSTQR
Trigger: GCGCTGTGTGGAAAGCTTCAATGCGAGAATGTACAG...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGATGTCGTACCTTTCCTaGTCTACAACAATGAACAGC +
Preference number: 5 (lower is better)
Translates to: NCGSCVSSFEISASLCIKMSYLS*STTMNS
Trigger: GCTGTTCATTGTTGTAGACAAGGAAAGGTACGACAT...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTCCGGAGAAACCACAGTaGCCAAATCTGTCACCTTTA +
Preference number: 5 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFPEKPQ*PNLSPL
Trigger: TAAAGGTGACAGATTTGGCAACTGTGGTTTCTCCGG...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp CCAATTATATTGATAGGATTTCTGTCTGTCCAAATTTCTAGTCCAACCAGCACAGCAAGATCCCTTTCCTaGTCTACAACAATGAACAGC +
Preference number: 5 (lower is better)
Translates to: PIILIGFLSVQISSPTSTARSLS*STTMNS
Trigger: GCTGTTCATTGTTGTAGACAAGGAAAGGGATCTTGC...TGTGCTGGTTGGACTAGAAATTTGGACAGACAGAAATCCTATCAATATAATTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211319.2
CDS-3UTR CAA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTAATATGCTGTTTTCCTaGGGCCTGGATGACGTAAGA +
Preference number: 5 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFNMLFS*GLDDVR
Trigger: TCTTACGTCATCCAGGCCCAAGGAAAACAGCATATT...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp AATTGTGGTTCTTGTGTAAGCTCCTTCGAGATATCTGCTTCTTTGTGCATTAAGGCTCCTCCAATTATATaGATAGGATTTCTGTCTGTC +
Preference number: 5 (lower is better)
Translates to: NCGSCVSSFEISASLCIKAPPII*IGFLSV
Trigger: GACAGACAGAAATCCTATCAATATAATTGGAGGAGC...CTTAATGCACAAAGAAGCAGATATCTCGAAGGAGCTTACACAAGAACCACAATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp AATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTACACGCTCCTCCAATTATATaGATAGGATTTCTGTCTGTC +
Preference number: 5 (lower is better)
Translates to: NPQMARENILTMETFTLHAPPII*IGFLSV
Trigger: GACAGACAGAAATCCTATCAATATAATTGGAGGAGC...GTGTAAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAAATGTCGTACCTTTCCTaGTCTACAACAATGAACAGC +
Preference number: 5 (lower is better)
Translates to: VNTCSNGQPETINGNWGQMSYLS*STTMNS
Trigger: GCTGTTCATTGTTGTAGACAAGGAAAGGTACGACAT...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTTGCTATCCAGGTAGTTaGCTAAGCGAATCATCTCTT +
Preference number: 5 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFCYPGS*LSESSL
Trigger: AAGAGATGATTCGCTTAGCAAACTACCTGGATAGCA...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp ACGTCAAGTGCATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAACTGTCACCTTTAGAATaGACTTCAATGAAGCAATCT +
Preference number: 5 (lower is better)
Translates to: TSSALNPQMARENILTMELSPLE*TSMKQS
Trigger: AGATTGCTTCATTGAAGTCAATTCTAAAGGTGACAG...TTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAATGCACTTGACGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp ATTAAATCCACAAATGGCCAGAGAAAACATTCTAACGATGGAAACGTTCACTTTGCTCCTCCAATTATATaGATAGGATTTCTGTCTGTC +
Preference number: 5 (lower is better)
Translates to: IKSTNGQRKHSNDGNVHFAPPII*IGFLSV
Trigger: GACAGACAGAAATCCTATCAATATAATTGGAGGAGC...AAAGTGAACGTTTCCATCGTTAGAATGTTTTCTCTGGCCATTTGTGGATTTAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS-3UTR CAA 90 bp GTTAATACATGTTCAAATGGTCAACCAGAAACTATTAATGGTAACTGGGGTCAACTGTCACCTTTAGAATaGACTTCAATGAAGCAATCT +
Preference number: 5 (lower is better)
Translates to: VNTCSNGQPETINGNWGQLSPLE*TSMKQS
Trigger: AGATTGCTTCATTGAAGTCAATTCTAAAGGTGACAG...TTGACCCCAGTTACCATTAATAGTTTCTGGTTGACCATTTGAACATGTATTAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 72 bp GTGGCGGTCTGGAGACACCTGGGCCCCCTGGCGGTCTaGAGACACCTGGGCCCCCTGGTGGTCTGGAGACAC +
Preference number: 6 (lower is better)
Translates to: VAVWRHLGPLAV*RHLGPLVVWRH
Trigger: GTGTCTCCAGACCACCAGGGGGCCCAGGTGTCTCCAGACCGCCAGGGGGCCCAGGTGTCTCCAGACCGCCAC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000208247.3
CDS CCA 72 bp CTGGTGGTCTGGAGACACCTGGGCCCCCTGGTGGTCTaGAGACATTTGGGCCCCCTGGTGGTCTGGAGATAC +
Preference number: 6 (lower is better)
Translates to: LVVWRHLGPLVV*RHLGPLVVWRY
Trigger: GTATCTCCAGACCACCAGGGGGCCCAAATGTCTCCAGACCACCAGGGGGCCCAGGTGTCTCCAGACCACCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 72 bp GGAGACACCTGGGCCCCCTGGTGGTCTGGAGACATTTaGGCCCCCTGGTGGTCTGGAGATACTAGGATCTCC +
Preference number: 6 (lower is better)
Translates to: GDTWAPWWSGDI*APWWSGDTRIS
Trigger: GGAGATCCTAGTATCTCCAGACCACCAGGGGGCCCAAATGTCTCCAGACCACCAGGGGGCCCAGGTGTCTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 72 bp GTAGGTTGGTACTGGGAATCTGTTTCCATGCCCAGGTaGCGGTCTGGAGACACCTGGGCCCCCTGGCGGTCT +
Preference number: 6 (lower is better)
Translates to: VGWYWESVSMPR*RSGDTWAPWRS
Trigger: AGACCGCCAGGGGGCCCAGGTGTCTCCAGACCGCCACCTGGGCATGGAAACAGATTCCCAGTACCAACCTAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208247.3
CDS GCA 72 bp CTTCACAGCATGGGTCCACCTCACACTCCTTCGCTGTaGCGCAGTCACACTCCTCTCCAGGGTCCACCAGCT +
Preference number: 6 (lower is better)
Translates to: LHSMGPPHTPSL*RSHTPLQGPPA
Trigger: AGCTGGTGGACCCTGGAGAGGAGTGTGACTGCGGCACAGCGAAGGAGTGTGAGGTGGACCCATGCTGTGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 72 bp TGGGCCCCCTGGTGGTCTGGAGACATTTGGGCCCCCTaGTGGTCTGGAGATACTAGGATCTCCTGGCTGTCT +
Preference number: 6 (lower is better)
Translates to: WAPWWSGDIWAP*WSGDTRISWLS
Trigger: AGACAGCCAGGAGATCCTAGTATCTCCAGACCACCAGGGGGCCCAAATGTCTCCAGACCACCAGGGGGCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 72 bp GAACTGCGCAGGCTGCTTGGCGGCGTAGGTTGGTACTaGGAATCTGTTTCCATGCCCAGGTGGCGGTCTGGA +
Preference number: 6 (lower is better)
Translates to: ELRRLLGGVGWY*ESVSMPRWRSG
Trigger: TCCAGACCGCCACCTGGGCATGGAAACAGATTCCCAGTACCAACCTACGCCGCCAAGCAGCCTGCGCAGTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084032.6
ENSMUST00000208247.3
CDS GCA 72 bp GAAGACCAGAAGCCCGTCCCTCAGTGCTGTGCTCTTTaGATTATACGTCGGCCCGCTGTCCACGCTTCCTCC +
Preference number: 6 (lower is better)
Translates to: EDQKPVPQCCAL*IIRRPAVHASS
Trigger: GGAGGAAGCGTGGACAGCGGGCCGACGTATAATGCAAAGAGCACAGCACTGAGGGACGGGCTTCTGGTCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 72 bp GCCCCCTGGTGGTCTGGAGACATTTGGGCCCCCTGGTaGTCTGGAGATACTAGGATCTCCTGGCTGTCTAGA +
Preference number: 6 (lower is better)
Translates to: APWWSGDIWAPW*SGDTRISWLSR
Trigger: TCTAGACAGCCAGGAGATCCTAGTATCTCCAGACCACCAGGGGGCCCAAATGTCTCCAGACCACCAGGGGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 72 bp GTGGAGGTGGCCTTGACGGGAACTGCGCAGGCTGCTTaGCGGCGTAGGTTGGTACTGGGAATCTGTTTCCAT +
Preference number: 6 (lower is better)
Translates to: VEVALTGTAQAA*RRRLVLGICFH
Trigger: ATGGAAACAGATTCCCAGTACCAACCTACGCCGCCAAGCAGCCTGCGCAGTTCCCGTCAAGGCCACCTCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 72 bp GAACTGCGCAGGCTGCTTGGCGGCGTAGGTTGGTACTaGGAATCTGTTTCCATGCCCAGGTGGTGGTCTGGA +
Preference number: 6 (lower is better)
Translates to: ELRRLLGGVGWY*ESVSMPRWWSG
Trigger: TCCAGACCACCACCTGGGCATGGAAACAGATTCCCAGTACCAACCTACGCCGCCAAGCAGCCTGCGCAGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084035.12
CDS CAA 72 bp CCTGAGAAGATATTTTCGGTTGTGGTGGAGGTGGCCTaGACGGGAACTGCGCAGGCTGCTTGGCGGCGTAGG +
Preference number: 6 (lower is better)
Translates to: PEKIFSVVVEVA*TGTAQAAWRRR
Trigger: CCTACGCCGCCAAGCAGCCTGCGCAGTTCCCGTCAAGGCCACCTCCACCACAACCGAAAATATCTTCTCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS TCA 72 bp GTGGTAGAACAGCTCTTCTTCTGCGCAGCAGCTGAGTaGCACTCGGATGCTCCTCCTCATCCCCCTGTGTGC +
Preference number: 6 (lower is better)
Translates to: VVEQLFFCAAAE*HSDAPPHPPVC
Trigger: GCACACAGGGGGATGAGGAGGAGCATCCGAGTGTCACTCAGCTGCTGCGCAGAAGAAGAGCTGTTCTACCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
ENSMUST00000211319.2
CDS GCA 72 bp GGAAGAAGAAGACCAGAAGCCCGTCCCTCAGTGCTGTaGTCTTTGCATTATACGTCGGCCCGCTGTCCACGC +
Preference number: 6 (lower is better)
Translates to: GRRRPEARPSVL*SLHYTSARCPR
Trigger: GCGTGGACAGCGGGCCGACGTATAATGCAAAGAGCACAGCACTGAGGGACGGGCTTCTGGTCTTCTTCTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CAA 72 bp AGAAGACCAGAAGCCCGTCCCTCAGTGCTGTGCTCTTaGCATTATACGTCGGCCCGCTGTCCACGCTTCCTC +
Preference number: 6 (lower is better)
Translates to: RRPEARPSVLCS*HYTSARCPRFL
Trigger: GAGGAAGCGTGGACAGCGGGCCGACGTATAATGCAAAGAGCACAGCACTGAGGGACGGGCTTCTGGTCTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS TCA 72 bp GTCTGTGGTAGAACAGCTCTTCTTCTGCGCAGCAGCTaGGTGACACTCGGATGCTCCTCCTCATCCCCCTGT +
Preference number: 6 (lower is better)
Translates to: VCGRTALLLRSS*VTLGCSSSSPC
Trigger: ACAGGGGGATGAGGAGGAGCATCCGAGTGTCACTCAGCTGCTGCGCAGAAGAAGAGCTGTTCTACCACAGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
ENSMUST00000211319.2
CDS CCA 72 bp TTCATAAGAAGAAAGATGGACAGTCTGTTCCAAGTCTaGTCGCCCGGCCTCGAGGACTGGGCCCAGCAAGCC +
Preference number: 6 (lower is better)
Translates to: FIRRKMDSLFQV*SPGLEDWAQQA
Trigger: GGCTTGCTGGGCCCAGTCCTCGAGGCCGGGCGACCAGACTTGGAACAGACTGTCCATCTTTCTTCTTATGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000207132.2
ENSMUST00000208247.3
CDS CCA 72 bp TTCACCATCCCTGGGTCTGGAACGTCGGAACCAAGCTaGAAATCCACACCCCAGCATTTGGTGCCTCGACTG +
Preference number: 6 (lower is better)
Translates to: FTIPGSGTSEPS*KSTPQHLVPRL
Trigger: CAGTCGAGGCACCAAATGCTGGGGTGTGGATTTCCAGCTTGGTTCCGACGTTCCAGACCCAGGGATGGTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 72 bp GTCCACGCTTCCTCCATATCCTTTGGTGTCACAGTGTaGGGGAGCCCAGCCGTCTTCACAGTGACAATTCTT +
Preference number: 6 (lower is better)
Translates to: VHASSISFGVTV*GSPAVFTVTIL
Trigger: AAGAATTGTCACTGTGAAGACGGCTGGGCTCCCCCACACTGTGACACCAAAGGATATGGAGGAAGCGTGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 72 bp TGGGCCCCCTGGTGGTCTGGAGATACTAGGATCTCCTaGCTGTCTAGAGACGTTTGCTTGATTTCTGCCATC +
Preference number: 6 (lower is better)
Translates to: WAPWWSGDTRIS*LSRDVCLISAI
Trigger: GATGGCAGAAATCAAGCAAACGTCTCTAGACAGCCAGGAGATCCTAGTATCTCCAGACCACCAGGGGGCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CAA 90 bp TTAGGAAGAAGAAGACCAGAAGCCCGTCCCTCAGTGCTGTGCTCTTaGCATTATACGTCGGCCCGCTGTCCACGCTTCCTCCATATCCTT +
Preference number: 6 (lower is better)
Translates to: LGRRRPEARPSVLCS*HYTSARCPRFLHIL
Trigger: AAGGATATGGAGGAAGCGTGGACAGCGGGCCGACGTATAATGCAAAGAGCACAGCACTGAGGGACGGGCTTCTGGTCTTCTTCTTCCTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS TCA 72 bp ATTCCAAACACCGGCATGTCCTGTACATTCTCGCATTaGAGCTTTCCACACAGCGCGTTCCCAGTGGCACAC +
Preference number: 6 (lower is better)
Translates to: IPNTGMSCTFSH*SFPHSAFPVAH
Trigger: GTGTGCCACTGGGAACGCGCTGTGTGGAAAGCTTCAATGCGAGAATGTACAGGACATGCCGGTGTTTGGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS GCA 72 bp ACAGCGCGTTCCCAGTGGCACACTTCTTGTACTCACTaGCGGAGAAACCACAGTTGCCAAATCTGTCACCTT +
Preference number: 6 (lower is better)
Translates to: TARSQWHTSCTH*RRNHSCQICHL
Trigger: AAGGTGACAGATTTGGCAACTGTGGTTTCTCCGGCAGTGAGTACAAGAAGTGTGCCACTGGGAACGCGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 72 bp ATCACATTTGGTGCCTTCATTCACCATCCCTGGGTCTaGAACGTCGGAACCAAGCTGGAAATCCACACCCCA +
Preference number: 6 (lower is better)
Translates to: ITFGAFIHHPWV*NVGTKLEIHTP
Trigger: TGGGGTGTGGATTTCCAGCTTGGTTCCGACGTTCCAGACCCAGGGATGGTGAATGAAGGCACCAAATGTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CAA 72 bp AGCTTTCCACACAGCGCGTTCCCAGTGGCACACTTCTaGTACTCACTGCCGGAGAAACCACAGTTGCCAAAT +
Preference number: 6 (lower is better)
Translates to: SFPHSAFPVAHF*YSLPEKPQLPN
Trigger: ATTTGGCAACTGTGGTTTCTCCGGCAGTGAGTACAAGAAGTGTGCCACTGGGAACGCGCTGTGTGGAAAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 72 bp ACACTCACTGGTCTTCCCTCTGCACATGGAGCCTCCTaGAAGGAACTGGCAATCTTTACAACAGTCGCCATA +
Preference number: 6 (lower is better)
Translates to: TLTGLPSAHGAS*KELAIFTTVAI
Trigger: TATGGCGACTGTTGTAAAGATTGCCAGTTCCTTCCAGGAGGCTCCATGTGCAGAGGGAAGACCAGTGAGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 72 bp CAGGAACATCACACTCACTGGTCTTCCCTCTGCACATaGAGCCTCCTGGAAGGAACTGGCAATCTTTACAAC +
Preference number: 6 (lower is better)
Translates to: QEHHTHWSSLCT*SLLEGTGNLYN
Trigger: GTTGTAAAGATTGCCAGTTCCTTCCAGGAGGCTCCATGTGCAGAGGGAAGACCAGTGAGTGTGATGTTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CAA 72 bp TATTCCAAACACCGGCATGTCCTGTACATTCTCGCATaGAAGCTTTCCACACAGCGCGTTCCCAGTGGCACA +
Preference number: 6 (lower is better)
Translates to: YSKHRHVLYILA*KLSTQRVPSGT
Trigger: TGTGCCACTGGGAACGCGCTGTGTGGAAAGCTTCAATGCGAGAATGTACAGGACATGCCGGTGTTTGGAATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CAA 90 bp AGCTGGTACTATTCCAAACACCGGCATGTCCTGTACATTCTCGCATaGAAGCTTTCCACACAGCGCGTTCCCAGTGGCACACTTCTTGTA +
Preference number: 6 (lower is better)
Translates to: SWYYSKHRHVLYILA*KLSTQRVPSGTLLV
Trigger: TACAAGAAGTGTGCCACTGGGAACGCGCTGTGTGGAAAGCTTCAATGCGAGAATGTACAGGACATGCCGGTGTTTGGAATAGTACCAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 72 bp GTTCTGGCAAGGATATCCATTCTGAATGAAGACATCTaGCGGGCAGAACTGAGAGGAACCGTTGCAGTACTC +
Preference number: 6 (lower is better)
Translates to: VLARISILNEDI*RAELRGTVAVL
Trigger: GAGTACTGCAACGGTTCCTCTCAGTTCTGCCCGCCAGATGTCTTCATTCAGAATGGATATCCTTGCCAGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS TCA 72 bp GTCCCATCATGTCGTACCTTTCCTTGTCTACAACAATaGACAGCTCCACATAGCGGGTCTGTGGTAGAACAG +
Preference number: 6 (lower is better)
Translates to: VPSCRTFPCLQQ*TAPHSGSVVEQ
Trigger: CTGTTCTACCACAGACCCGCTATGTGGAGCTGTTCATTGTTGTAGACAAGGAAAGGTACGACATGATGGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 72 bp GCATTTGGTGCCTCGACTGGGTGTCTGAATGATAGCTaGTACTATTCCAAACACCGGCATGTCCTGTACATT +
Preference number: 6 (lower is better)
Translates to: AFGASTGCLNDS*YYSKHRHVLYI
Trigger: AATGTACAGGACATGCCGGTGTTTGGAATAGTACCAGCTATCATTCAGACACCCAGTCGAGGCACCAAATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CAA 90 bp TGGCAATCTTTACAACAGTCGCCATATGCACACTCAGCAAATGACTaGAGCTTACAAGTGCTTCCTTCACAGCATGGGTCCACCTCACAC +
Preference number: 6 (lower is better)
Translates to: WQSLQQSPYAHSAND*SLQVLPSQHGSTSH
Trigger: GTGTGAGGTGGACCCATGCTGTGAAGGAAGCACTTGTAAGCTCAAGTCATTTGCTGAGTGTGCATATGGCGACTGTTGTAAAGATTGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CCA 72 bp TTTGCTAAGCGAATCATCTCTTCTCTCACAGCAGTCTaGTTCCGTCCCATCATGTCGTACCTTTCCTTGTCT +
Preference number: 6 (lower is better)
Translates to: FAKRIISSLTAV*FRPIMSYLSLS
Trigger: AGACAAGGAAAGGTACGACATGATGGGACGGAACCAGACTGCTGTGAGAGAAGAGATGATTCGCTTAGCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CAA 72 bp TTACAACAGTCGCCATATGCACACTCAGCAAATGACTaGAGCTTACAAGTGCTTCCTTCACAGCATGGGTCC +
Preference number: 6 (lower is better)
Translates to: LQQSPYAHSAND*SLQVLPSQHGS
Trigger: GGACCCATGCTGTGAAGGAAGCACTTGTAAGCTCAAGTCATTTGCTGAGTGTGCATATGGCGACTGTTGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CAA 90 bp TCACTGCCGGAGAAACCACAGTTGCCAAATCTGTCACCTTTAGAATaGACTTCAATGAAGCAATCTCTTGGGGCAGCCTTAGCCTTTGAA +
Preference number: 6 (lower is better)
Translates to: SLPEKPQLPNLSPLE*TSMKQSLGAALAFE
Trigger: TTCAAAGGCTAAGGCTGCCCCAAGAGATTGCTTCATTGAAGTCAATTCTAAAGGTGACAGATTTGGCAACTGTGGTTTCTCCGGCAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CAA 90 bp TTCCCAGTGGCACACTTCTTGTACTCACTGCCGGAGAAACCACAGTaGCCAAATCTGTCACCTTTAGAATTGACTTCAATGAAGCAATCT +
Preference number: 6 (lower is better)
Translates to: FPVAHFLYSLPEKPQ*PNLSPLELTSMKQS
Trigger: AGATTGCTTCATTGAAGTCAATTCTAAAGGTGACAGATTTGGCAACTGTGGTTTCTCCGGCAGTGAGTACAAGAAGTGTGCCACTGGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3
CDS CAA 72 bp GCACACTTCTTGTACTCACTGCCGGAGAAACCACAGTaGCCAAATCTGTCACCTTTAGAATTGACTTCAATG +
Preference number: 6 (lower is better)
Translates to: AHFLYSLPEKPQ*PNLSPLELTSM
Trigger: CATTGAAGTCAATTCTAAAGGTGACAGATTTGGCAACTGTGGTTTCTCCGGCAGTGAGTACAAGAAGTGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084032.6
ENSMUST00000084035.12
ENSMUST00000208247.3