RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ADAM8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025473

Ensembl transcript IDs: ENSMUST00000026546.16, ENSMUST00000106069.9, ENSMUST00000148670.8, ENSMUST00000173209.2

Found 249 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGTGCCTTGGAGAGAGGTCACTGTGTGAGGGCCAGTGCAGAAGTTaGTGGGAGGGGACTCCTGGCATTCTGTCCACCCAGAGACAGACA +
Preference number: 1 (lower is better)
Translates to: LCLGERSLCEGQCRS*WEGTPGILSTQRQT
Trigger: TGTCTGTCTCTGGGTGGACAGAATGCCAGGAGTCCCCTCCCAGCAACTTCTGCACTGGCCCTCACACAGTGACCTCTCTCCAAGGCACAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
3UTR GCA 90 bp ATACAGGAACTGTGCCTTGGAGAGAGGTCACTGTGTGAGGGCCAGTaGAGAAGTTGCTGGGAGGGGACTCCTGGCATTCTGTCCACCCAG +
Preference number: 1 (lower is better)
Translates to: IQELCLGERSLCEGQ*RSCWEGTPGILSTQ
Trigger: CTGGGTGGACAGAATGCCAGGAGTCCCCTCCCAGCAACTTCTGCACTGGCCCTCACACAGTGACCTCTCTCCAAGGCACAGTTCCTGTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
3UTR TCA 90 bp TGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGTCACTGTGTaGGGGCCAGTGCAGAAGTTGCTGGGAGGGGACTCCTGGCATTCT +
Preference number: 1 (lower is better)
Translates to: WDVDTGTVPWREVTV*GPVQKLLGGDSWHS
Trigger: AGAATGCCAGGAGTCCCCTCCCAGCAACTTCTGCACTGGCCCTCACACAGTGACCTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
3UTR TCA 90 bp TTCATGAGGGCATCTGGACAGCAAGAGCCACAGAAAGATTATTCCTaGGGTAGGAACAGCGTGTGCAGGTCCAGCCTGGGTGGTGGTTGT +
Preference number: 1 (lower is better)
Translates to: FMRASGQQEPQKDYS*GRNSVCRSSLGGGC
Trigger: ACAACCACCACCCAGGCTGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCTGTGGCTCTTGCTGTCCAGATGCCCTCATGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
3UTR CCA 90 bp ACGCAGATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTaGTTCATGAGGGCATCTGGACAGCAAGAGCCACAGAAAGATTAT +
Preference number: 1 (lower is better)
Translates to: TQMYGLSWPRPVRGH*FMRASGQQEPQKDY
Trigger: ATAATCTTTCTGTGGCTCTTGCTGTCCAGATGCCCTCATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACATCTGCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
3UTR CCA 90 bp AGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCCAGCCTaGGTGGTGGTTGTGGTGTTGCTGAAGGAACACATTTATAGGAGC +
Preference number: 1 (lower is better)
Translates to: RKIIPEVGTACAGPA*VVVVVLLKEHIYRS
Trigger: GCTCCTATAAATGTGTTCCTTCAGCAACACCACAACCACCACCCAGGCTGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
3UTR CCA 90 bp ACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTaGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGTCACTGTG +
Preference number: 1 (lower is better)
Translates to: TPRTTSFPFLSLIHE*DVDTGTVPWREVTV
Trigger: CACAGTGACCTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
3UTR-3UTR TCA 90 bp CTGTGCCTTGGAGAGAGGTCACTGTGTGAGGGCCAGTGCAGAAGTTGCTGGGAGCAGAAAGATTATTCCTaGGGTAGGAACAGCGTGTGC +
Preference number: 2 (lower is better)
Translates to: LCLGERSLCEGQCRSCWEQKDYS*GRNSVC
Trigger: GCACACGCTGTTCCTACCTCAGGAATAATCTTTCTG...CTCCCAGCAACTTCTGCACTGGCCCTCACACAGTGACCTCTCTCCAAGGCACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
3UTR-3UTR GCA 90 bp CCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGGCTGTGTGAGGGCCAGTaGAGAAGTTGCTGGGAGGGG +
Preference number: 2 (lower is better)
Translates to: PNTPRTTSFPFLSLIHEWLCEGQ*RSCWEG
Trigger: CCCCTCCCAGCAACTTCTGCACTGGCCCTCACACAG...CCACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
3UTR CAA 90 bp CCTAAGTCTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTaGGAGAGAGGTCACTGTGTGAGGGCCAGTGCAGAAGTTGCTGGG +
Preference number: 2 (lower is better)
Translates to: PKSHTRVGCRYRNCA*ERGHCVRASAEVAG
Trigger: CCCAGCAACTTCTGCACTGGCCCTCACACAGTGACCTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAGACTTAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
3UTR-3UTR TCA 90 bp CTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGTCACTAGAGACAGACAGACTTaGTCACGCCCACTGCAGGGT +
Preference number: 2 (lower is better)
Translates to: LIHEWDVDTGTVPWREVTRDRQT*SRPLQG
Trigger: ACCCTGCAGTGGGCGTGATCAAGTCTGTCTGTCTCT...AGTGACCTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
3UTR TCA 72 bp CTCCTGGCATTCTGTCCACCCAGAGACAGACAGACTTaGTCACGCCCACTGCAGGGTACACCGCCCCTGCCT +
Preference number: 3 (lower is better)
Translates to: LLAFCPPRDRQT*SRPLQGTPPLP
Trigger: AGGCAGGGGCGGTGTACCCTGCAGTGGGCGTGATCAAGTCTGTCTGTCTCTGGGTGGACAGAATGCCAGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
3UTR TCA 72 bp GCCCCTGAGGCCAGCACAGGTGCTAATACTGGCAGCTaGGCCCTCGTACCCTTCCACATGGCCTTGGTAGAG +
Preference number: 3 (lower is better)
Translates to: APEASTGANTGS*ALVPFHMALVE
Trigger: CTCTACCAAGGCCATGTGGAAGGGTACGAGGGCTCAGCTGCCAGTATTAGCACCTGTGCTGGCCTCAGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173209.2
3UTR GCA 72 bp CTGTGCCTTGGAGAGAGGTCACTGTGTGAGGGCCAGTaGAGAAGTTGCTGGGAGGGGACTCCTGGCATTCTG +
Preference number: 3 (lower is better)
Translates to: LCLGERSLCEGQ*RSCWEGTPGIL
Trigger: CAGAATGCCAGGAGTCCCCTCCCAGCAACTTCTGCACTGGCCCTCACACAGTGACCTCTCTCCAAGGCACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
3UTR CCA 72 bp TATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTaGTTCATGAGGGCATCTGGACAGCAAGAGCCACAG +
Preference number: 3 (lower is better)
Translates to: YGLSWPRPVRGH*FMRASGQQEPQ
Trigger: CTGTGGCTCTTGCTGTCCAGATGCCCTCATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
3UTR TCA 72 bp GCATCTGGACAGCAAGAGCCACAGAAAGATTATTCCTaGGGTAGGAACAGCGTGTGCAGGTCCAGCCTGGGT +
Preference number: 3 (lower is better)
Translates to: ASGQQEPQKDYS*GRNSVCRSSLG
Trigger: ACCCAGGCTGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCTGTGGCTCTTGCTGTCCAGATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
3UTR TCA 72 bp GTGCAGGTCCAGCCTGGGTGGTGGTTGTGGTGTTGCTaGAGGAACACATTTATAGGAGCAGTGGTATCTCCA +
Preference number: 3 (lower is better)
Translates to: VQVQPGWWLWCC*RNTFIGAVVSP
Trigger: TGGAGATACCACTGCTCCTATAAATGTGTTCCTTCAGCAACACCACAACCACCACCCAGGCTGGACCTGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
3UTR CCA 72 bp AAGGCCAGTGAGAGGCCACTGGTTCATGAGGGCATCTaGACAGCAAGAGCCACAGAAAGATTATTCCTGAGG +
Preference number: 3 (lower is better)
Translates to: KASERPLVHEGI*TARATERLFLR
Trigger: CCTCAGGAATAATCTTTCTGTGGCTCTTGCTGTCCAGATGCCCTCATGAACCAGTGGCCTCTCACTGGCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
3UTR CCA 72 bp ACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTaGGATGTAGATACAGGAACTGTGCCTTGGAGAGAG +
Preference number: 3 (lower is better)
Translates to: TTSFPFLSLIHE*DVDTGTVPWRE
Trigger: CTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp GTGCAGAAGTTGCTGGGAGGGGACTCCTGGCATTCTGTCCACCCAGAGACAGACGGGAGGGCAGGGCTCTaGGGGAGCGGGATGCAGCTA +
Preference number: 4 (lower is better)
Translates to: VQKLLGGDSWHSVHPETDGRAGL*GSGMQL
Trigger: TAGCTGCATCCCGCTCCCGCAGAGCCCTGCCCTCCC...GTCTGTCTCTGGGTGGACAGAATGCCAGGAGTCCCCTCCCAGCAACTTCTGCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp CTGAGGCCAGCACAGGTGCTAATACTGGCAGCTGAGCCCTCGTACCCTTCCACAGGGAGGGCAGGGCTCTaGGGGAGCGGGATGCAGCTA +
Preference number: 4 (lower is better)
Translates to: LRPAQVLILAAEPSYPSTGRAGL*GSGMQL
Trigger: TAGCTGCATCCCGCTCCCGCAGAGCCCTGCCCTCCC...TGTGGAAGGGTACGAGGGCTCAGCTGCCAGTATTAGCACCTGTGCTGGCCTCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173209.2
CDS-3UTR CCA 90 bp GTACCCTTCCACATGGCCTTGGTAGAGGCAATGGTCCTGCTCCTGCAGTTGCTCCCAGCAGGTCCCCAGTaGGAGGGCAGGGCTCTGCGG +
Preference number: 4 (lower is better)
Translates to: VPFHMALVEAMVLLLQLLPAGPQ*EGRALR
Trigger: CCGCAGAGCCCTGCCCTCCCACTGGGGACCTGCTGG...GAGCAACTGCAGGAGCAGGACCATTGCCTCTACCAAGGCCATGTGGAAGGGTAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173209.2
CDS-3UTR TCA 90 bp CCAGTGCAGAAGTTGCTGGGAGGGGACTCCTGGCATTCTGTCCACCCAGAGACAGGCTCACCAGCTCCCTaGGTTGCTCCAGGCACCGTC +
Preference number: 4 (lower is better)
Translates to: PVQKLLGGDSWHSVHPETGSPAP*VAPGTV
Trigger: GACGGTGCCTGGAGCAACTCAGGGAGCTGGTGAGCC...TGTCTCTGGGTGGACAGAATGCCAGGAGTCCCCTCCCAGCAACTTCTGCACTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp GACTCCTGGCATTCTGTCCACCCAGAGACAGACAGACTTGATCACGCCCACTGCGGGAGGGCAGGGCTCTaGGGGAGCGGGATGCAGCTA +
Preference number: 4 (lower is better)
Translates to: DSWHSVHPETDRLDHAHCGRAGL*GSGMQL
Trigger: TAGCTGCATCCCGCTCCCGCAGAGCCCTGCCCTCCC...GCAGTGGGCGTGATCAAGTCTGTCTGTCTCTGGGTGGACAGAATGCCAGGAGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp CCAGTGCAGAAGTTGCTGGGAGGGGACTCCTGGCATTCTGTCCACCCAGAGACACACACTCTGCCCCCTTaGCCAGCTGGCAAGTGGTGG +
Preference number: 4 (lower is better)
Translates to: PVQKLLGGDSWHSVHPETHTLPP*PAGKWW
Trigger: CCACCACTTGCCAGCTGGTCAAGGGGGCAGAGTGTG...TGTCTCTGGGTGGACAGAATGCCAGGAGTCCCCTCCCAGCAACTTCTGCACTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp AAGCCCCTGAGGCCAGCACAGGTGCTAATACTGGCAGCTGAGCCCTCGTACCCTGGTCTCTGTGTAGCTTaGGCCCAGCAGGTCCCCAGT +
Preference number: 4 (lower is better)
Translates to: KPLRPAQVLILAAEPSYPGLCVA*AQQVPS
Trigger: ACTGGGGACCTGCTGGGCTCAAGCTACACAGAGACC...AGGGTACGAGGGCTCAGCTGCCAGTATTAGCACCTGTGCTGGCCTCAGGGGCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173209.2
CDS-3UTR GCA 90 bp GTGCAGAAGTTGCTGGGAGGGGACTCCTGGCATTCTGTCCACCCAGAGACAGACACCAGCTCCCTGAGTTaGTCCAGGCACCGTCCCTCC +
Preference number: 4 (lower is better)
Translates to: VQKLLGGDSWHSVHPETDTSSLS*SRHRPS
Trigger: GGAGGGACGGTGCCTGGAGCAACTCAGGGAGCTGGT...GTCTGTCTCTGGGTGGACAGAATGCCAGGAGTCCCCTCCCAGCAACTTCTGCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
3UTR CAA 72 bp ACTCCTGGCATTCTGTCCACCCAGAGACAGACAGACTaGATCACGCCCACTGCAGGGTACACCGCCCCTGCC +
Preference number: 4 (lower is better)
Translates to: TPGILSTQRQTD*ITPTAGYTAPA
Trigger: GGCAGGGGCGGTGTACCCTGCAGTGGGCGTGATCAAGTCTGTCTGTCTCTGGGTGGACAGAATGCCAGGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp CCAGTGCAGAAGTTGCTGGGAGGGGACTCCTGGCATTCTGTCCACCCAGAGACACGATGCTTTCGGTCATaGTGCAGCCACCACCCTCCC +
Preference number: 4 (lower is better)
Translates to: PVQKLLGGDSWHSVHPETRCFRS*CSHHPP
Trigger: GGGAGGGTGGTGGCTGCATCATGACCGAAAGCATCG...TGTCTCTGGGTGGACAGAATGCCAGGAGTCCCCTCCCAGCAACTTCTGCACTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp CCAGTGCAGAAGTTGCTGGGAGGGGACTCCTGGCATTCTGTCCACCCAGAGACAGTGTCCATAAGACGCTaGGCAGCCAGAGGCCAAGCA +
Preference number: 4 (lower is better)
Translates to: PVQKLLGGDSWHSVHPETVSIRR*AARGQA
Trigger: TGCTTGGCCTCTGGCTGCTCAGCGTCTTATGGACAC...TGTCTCTGGGTGGACAGAATGCCAGGAGTCCCCTCCCAGCAACTTCTGCACTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp CTGAGGCCAGCACAGGTGCTAATACTGGCAGCTGAGCCCTCGTACCCTTCCACAGTGTCCATAAGACGCTaGGCAGCCAGAGGCCAAGCA +
Preference number: 4 (lower is better)
Translates to: LRPAQVLILAAEPSYPSTVSIRR*AARGQA
Trigger: TGCTTGGCCTCTGGCTGCTCAGCGTCTTATGGACAC...TGTGGAAGGGTACGAGGGCTCAGCTGCCAGTATTAGCACCTGTGCTGGCCTCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173209.2
CDS-3UTR TCA 90 bp AACAGCGTGTGCAGGTCCAGCCTGGGTGGTGGTTGTGGTGTTGCTGAAGGAACACGATGCTTTCGGTCATaGTGCAGCCACCACCCTCCC +
Preference number: 4 (lower is better)
Translates to: NSVCRSSLGGGCGVAEGTRCFRS*CSHHPP
Trigger: GGGAGGGTGGTGGCTGCATCATGACCGAAAGCATCG...TGTTCCTTCAGCAACACCACAACCACCACCCAGGCTGGACCTGCACACGCTGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp CCAGTGCAGAAGTTGCTGGGAGGGGACTCCTGGCATTCTGTCCACCCAGAGACAAGGAACTGGGAGTGGTaGACTGGACACAGCACCTGG +
Preference number: 4 (lower is better)
Translates to: PVQKLLGGDSWHSVHPETRNWEW*TGHSTW
Trigger: CCAGGTGCTGTGTCCAGTTCACCACTCCCAGTTCCT...TGTCTCTGGGTGGACAGAATGCCAGGAGTCCCCTCCCAGCAACTTCTGCACTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp ATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGAGGGCAACCAGCTCCCTGAGTTaGTCCAGGCACCGTCCCTCC +
Preference number: 4 (lower is better)
Translates to: MYGLSWPRPVRGHWFMRATSSLS*SRHRPS
Trigger: GGAGGGACGGTGCCTGGAGCAACTCAGGGAGCTGGT...TGCCCTCATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp ACGCAGATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGAGACTCTCTGGGTACTaGCCCCAGTGGGAGGGCAGG +
Preference number: 4 (lower is better)
Translates to: TQMYGLSWPRPVRGHWFMRLSGY*PQWEGR
Trigger: CCTGCCCTCCCACTGGGGCCAGTACCCAGAGAGTCT...CATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACATCTGCGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp CCAGTGCAGAAGTTGCTGGGAGGGGACTCCTGGCATTCTGTCCACCCAGAGACACTGGGAGTGGTGAACTaGACACAGCACCTGGAGGTG +
Preference number: 4 (lower is better)
Translates to: PVQKLLGGDSWHSVHPETLGVVN*TQHLEV
Trigger: CACCTCCAGGTGCTGTGTCCAGTTCACCACTCCCAG...TGTCTCTGGGTGGACAGAATGCCAGGAGTCCCCTCCCAGCAACTTCTGCACTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp GACTCCTGGCATTCTGTCCACCCAGAGACAGACAGACTTGATCACGCCCACTGCCTTGGGTTTCAGCTCTaGGAGGGGCTTGGTGGGAGG +
Preference number: 4 (lower is better)
Translates to: DSWHSVHPETDRLDHAHCLGFQL*EGLGGR
Trigger: CCTCCCACCAAGCCCCTCCCAGAGCTGAAACCCAAG...GCAGTGGGCGTGATCAAGTCTGTCTGTCTCTGGGTGGACAGAATGCCAGGAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp ATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGAGGGCACCCGGGCTTGACTGGTaGTGTCGGGGGTGCAAAGGT +
Preference number: 4 (lower is better)
Translates to: MYGLSWPRPVRGHWFMRAPGLDW*CRGCKG
Trigger: ACCTTTGCACCCCCGACACCACCAGTCAAGCCCGGG...TGCCCTCATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp GCCCTCGTACCCTTCCACATGGCCTTGGTAGAGGCAATGGTCCTGCTCCTGCAGAGAGCCATTGGCAGCTaGGTAGGTCTCTGTGTAGCT +
Preference number: 4 (lower is better)
Translates to: ALVPFHMALVEAMVLLLQRAIGS*VGLCVA
Trigger: AGCTACACAGAGACCTACTCAGCTGCCAATGGCTCT...CTGCAGGAGCAGGACCATTGCCTCTACCAAGGCCATGTGGAAGGGTACGAGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173209.2
CDS-3UTR GCA 90 bp ATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGAGGGCAGGCGCACGGCCTCTCTaGTCCCCAACTTCTGGAACT +
Preference number: 4 (lower is better)
Translates to: MYGLSWPRPVRGHWFMRAGARPL*SPTSGT
Trigger: AGTTCCAGAAGTTGGGGAGCAGAGAGGCCGTGCGCC...TGCCCTCATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp ACGCAGATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGACCACTGGCACACTCTaGCCCCTTGACCAGCTGGCA +
Preference number: 4 (lower is better)
Translates to: TQMYGLSWPRPVRGHWFMTTGTL*PLDQLA
Trigger: TGCCAGCTGGTCAAGGGGGCAGAGTGTGCCAGTGGT...CATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACATCTGCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp CCAGTGCAGAAGTTGCTGGGAGGGGACTCCTGGCATTCTGTCCACCCAGAGACAGCTCATGGGCCATGGTaGAGGCTACACCAATGGAGT +
Preference number: 4 (lower is better)
Translates to: PVQKLLGGDSWHSVHPETAHGPW*RLHQWS
Trigger: ACTCCATTGGTGTAGCCTCCACCATGGCCCATGAGC...TGTCTCTGGGTGGACAGAATGCCAGGAGTCCCCTCCCAGCAACTTCTGCACTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp GACTCCTGGCATTCTGTCCACCCAGAGACAGACAGACTTGATCACGCCCACTGCCGTTCAAGGGGCTTCTaGCCTCCCTCACAGTACAGC +
Preference number: 4 (lower is better)
Translates to: DSWHSVHPETDRLDHAHCRSRGF*PPSQYS
Trigger: GCTGTACTGTGAGGGAGGCCAGAAGCCCCTTGAACG...GCAGTGGGCGTGATCAAGTCTGTCTGTCTCTGGGTGGACAGAATGCCAGGAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp GTGCAGAAGTTGCTGGGAGGGGACTCCTGGCATTCTGTCCACCCAGAGACAGACCGGGGGTGCAAAGGTTaGCTTGACCTGCTTGGGTTT +
Preference number: 4 (lower is better)
Translates to: VQKLLGGDSWHSVHPETDRGCKG*LDLLGF
Trigger: AAACCCAAGCAGGTCAAGCCAACCTTTGCACCCCCG...GTCTGTCTCTGGGTGGACAGAATGCCAGGAGTCCCCTCCCAGCAACTTCTGCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp ACTCCTGGCATTCTGTCCACCCAGAGACAGACAGACTTGATCACGCCCACTGCAGGTCTCTGTGTAGCTTaGGCCCAGCAGGTCCCTGTT +
Preference number: 4 (lower is better)
Translates to: TPGILSTQRQTDLITPTAGLCVA*AQQVPV
Trigger: AACAGGGACCTGCTGGGCTCAAGCTACACAGAGACC...TGCAGTGGGCGTGATCAAGTCTGTCTGTCTCTGGGTGGACAGAATGCCAGGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp AGAAGTTGCTGGGAGGGGACTCCTGGCATTCTGTCCACCCAGAGACAGACAGACTCAGGTTGGTATCTTTaGCCCCACAGGTCCCAGCCT +
Preference number: 4 (lower is better)
Translates to: RSCWEGTPGILSTQRQTDSGWYL*PHRSQP
Trigger: AGGCTGGGACCTGTGGGGTCAAAGATACCAACCTGA...GTCTGTCTGTCTCTGGGTGGACAGAATGCCAGGAGTCCCCTCCCAGCAACTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp CTGTGCCTTGGAGAGAGGTCACTGTGTGAGGGCCAGTGCAGAAGTTGCTGGGAGCACCCACGAACCGGTTaGCATCTGGAACATTGGTCA +
Preference number: 4 (lower is better)
Translates to: LCLGERSLCEGQCRSCWEHPRTG*HLEHWS
Trigger: TGACCAATGTTCCAGATGTCAACCGGTTCGTGGGTG...CTCCCAGCAACTTCTGCACTGGCCCTCACACAGTGACCTCTCTCCAAGGCACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp ACGCAGATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGAGGAACTGGGAGTGGTaGACTGGACACAGCACCTGG +
Preference number: 4 (lower is better)
Translates to: TQMYGLSWPRPVRGHWFMRNWEW*TGHSTW
Trigger: CCAGGTGCTGTGTCCAGTTCACCACTCCCAGTTCCT...CATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACATCTGCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp AGCAAGAGCCACAGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCCAGGCTCACCAGCTCCCTaGGTTGCTCCAGGCACCGTC +
Preference number: 4 (lower is better)
Translates to: SKSHRKIIPEVGTACAGPGSPAP*VAPGTV
Trigger: GACGGTGCCTGGAGCAACTCAGGGAGCTGGTGAGCC...TGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCTGTGGCTCTTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp ACTCCTGGCATTCTGTCCACCCAGAGACAGACAGACTTGATCACGCCCACTGCATGCAGGGTGAAAACGTaGCCGCTGGTCCCAAGAGCA +
Preference number: 4 (lower is better)
Translates to: TPGILSTQRQTDLITPTACRVKT*PLVPRA
Trigger: TGCTCTTGGGACCAGCGGGCACGTTTTCACCCTGCA...TGCAGTGGGCGTGATCAAGTCTGTCTGTCTCTGGGTGGACAGAATGCCAGGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp GATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGAGGGCCGAGATAGGCTTGGGTaGCACACTCCTCCTCTGGAT +
Preference number: 4 (lower is better)
Translates to: DVWSKLAKASERPLVHEGRDRLG*HTPPLD
Trigger: ATCCAGAGGAGGAGTGTGGCACCCAAGCCTATCTCG...GCCCTCATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp CCAGTGCAGAAGTTGCTGGGAGGGGACTCCTGGCATTCTGTCCACCCAGAGACACATAGCGGGTTTCTCTaGGTATCAGCCAGTTCCGTG +
Preference number: 4 (lower is better)
Translates to: PVQKLLGGDSWHSVHPETHSGFL*VSASSV
Trigger: CACGGAACTGGCTGATACCCAGAGAAACCCGCTATG...TGTCTCTGGGTGGACAGAATGCCAGGAGTCCCCTCCCAGCAACTTCTGCACTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp ACTCCTGGCATTCTGTCCACCCAGAGACAGACAGACTTGATCACGCCCACTGCAACTGCTGTGCCAGGGTaGGACAGCTCCCATCAAAGC +
Preference number: 4 (lower is better)
Translates to: TPGILSTQRQTDLITPTATAVPG*DSSHQS
Trigger: GCTTTGATGGGAGCTGTCCCACCCTGGCACAGCAGT...TGCAGTGGGCGTGATCAAGTCTGTCTGTCTCTGGGTGGACAGAATGCCAGGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp AGGAACTGTGCCTTGGAGAGAGGTCACTGTGTGAGGGCCAGTGCAGAAGTTGCTACTGCTGTGCCAGGGTaGGACAGCTCCCATCAAAGC +
Preference number: 4 (lower is better)
Translates to: RNCALERGHCVRASAEVATAVPG*DSSHQS
Trigger: GCTTTGATGGGAGCTGTCCCACCCTGGCACAGCAGT...AGCAACTTCTGCACTGGCCCTCACACAGTGACCTCTCTCCAAGGCACAGTTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp CCAGTGCAGAAGTTGCTGGGAGGGGACTCCTGGCATTCTGTCCACCCAGAGACAGCATGGCAGACTCCATaGTTGGAGGAGAAAGTGCAG +
Preference number: 4 (lower is better)
Translates to: PVQKLLGGDSWHSVHPETAWQTP*LEEKVQ
Trigger: CTGCACTTTCTCCTCCAACCATGGAGTCTGCCATGC...TGTCTCTGGGTGGACAGAATGCCAGGAGTCCCCTCCCAGCAACTTCTGCACTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp AGCAAGAGCCACAGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCCACACACTCTGCCCCCTTaGCCAGCTGGCAAGTGGTGG +
Preference number: 4 (lower is better)
Translates to: SKSHRKIIPEVGTACAGPHTLPP*PAGKWW
Trigger: CCACCACTTGCCAGCTGGTCAAGGGGGCAGAGTGTG...TGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCTGTGGCTCTTGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp GACTCCTGGCATTCTGTCCACCCAGAGACAGACAGACTTGATCACGCCCACTGCAAGGTTGGCTTGACCTaGTTGGGTTTCAGCTCTGGG +
Preference number: 4 (lower is better)
Translates to: DSWHSVHPETDRLDHAHCKVGLT*LGFSSG
Trigger: CCCAGAGCTGAAACCCAAGCAGGTCAAGCCAACCTT...GCAGTGGGCGTGATCAAGTCTGTCTGTCTCTGGGTGGACAGAATGCCAGGAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp ACGCAGATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGGCTCATGGGCCATGGTaGAGGCTACACCAATGGAGT +
Preference number: 4 (lower is better)
Translates to: TQMYGLSWPRPVRGHWFMAHGPW*RLHQWS
Trigger: ACTCCATTGGTGTAGCCTCCACCATGGCCCATGAGC...CATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACATCTGCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp AGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCCAGCCTGGGTGGTGAAAGCAGTAGCCCCCTaGGCAGGGAGTGCCATTCTG +
Preference number: 4 (lower is better)
Translates to: RKIIPEVGTACAGPAWVVKAVAP*AGSAIL
Trigger: CAGAATGGCACTCCCTGCCCAGGGGGCTACTGCTTT...CACCACCCAGGCTGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp GACTCCTGGCATTCTGTCCACCCAGAGACAGACAGACTTGATCACGCCCACTGCGGCAGACTCCATGGTTaGAGGAGAAAGTGCAGAAGG +
Preference number: 4 (lower is better)
Translates to: DSWHSVHPETDRLDHAHCGRLHG*RRKCRR
Trigger: CCTTCTGCACTTTCTCCTCCAACCATGGAGTCTGCC...GCAGTGGGCGTGATCAAGTCTGTCTGTCTCTGGGTGGACAGAATGCCAGGAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp ATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGAGGGCACCTGTGCCAAGAGCATaGCAGACTCCATGGTTGGAG +
Preference number: 4 (lower is better)
Translates to: MYGLSWPRPVRGHWFMRAPVPRA*QTPWLE
Trigger: CTCCAACCATGGAGTCTGCCATGCTCTTGGCACAGG...TGCCCTCATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp AGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCCAGCCTGGGTGGTGCTGGGAGTGGTGAACTaGACACAGCACCTGGAGGTG +
Preference number: 4 (lower is better)
Translates to: RKIIPEVGTACAGPAWVVLGVVN*TQHLEV
Trigger: CACCTCCAGGTGCTGTGTCCAGTTCACCACTCCCAG...CACCACCCAGGCTGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp ATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGAGGGCACGGGGGTGCAAAGGTTaGCTTGACCTGCTTGGGTTT +
Preference number: 4 (lower is better)
Translates to: MYGLSWPRPVRGHWFMRARGCKG*LDLLGF
Trigger: AAACCCAAGCAGGTCAAGCCAACCTTTGCACCCCCG...TGCCCTCATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp TTCTTGTCCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACTCCAGTCCCGGGCTTaGCTGGTGGTGTCGGGGGTG +
Preference number: 4 (lower is better)
Translates to: FLSQHPKNDVFSFPKSHTLQSRA*LVVSGV
Trigger: CACCCCCGACACCACCAGTCAAGCCCGGGACTGGAG...TGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGGACAAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp CCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGGACCACTGGCACACTCTaGCCCCTTGACCAGCTGGCA +
Preference number: 4 (lower is better)
Translates to: PNTPRTTSFPFLSLIHEWTTGTL*PLDQLA
Trigger: TGCCAGCTGGTCAAGGGGGCAGAGTGTGCCAGTGGT...CCACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp ATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGAGGGCAAGGTGTCAATGTTGCTaGCTGTGCCAAGAGCATGGC +
Preference number: 4 (lower is better)
Translates to: MYGLSWPRPVRGHWFMRARCQCC*LCQEHG
Trigger: GCCATGCTCTTGGCACAGGCAGCAACATTGACACCT...TGCCCTCATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp CCAGTGCAGAAGTTGCTGGGAGGGGACTCCTGGCATTCTGTCCACCCAGAGACACAAAGGTGTCAATGTTaGTGCCTGTGCCAAGAGCAT +
Preference number: 4 (lower is better)
Translates to: PVQKLLGGDSWHSVHPETQRCQC*CLCQEH
Trigger: ATGCTCTTGGCACAGGCAGCAACATTGACACCTTTG...TGTCTCTGGGTGGACAGAATGCCAGGAGTCCCCTCCCAGCAACTTCTGCACTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp CTAAGTCTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGAGACTCTCTGGGTACTaGCCCCAGTGGGAGGGCAGG +
Preference number: 4 (lower is better)
Translates to: LSLIHEWDVDTGTVPWRERLSGY*PQWEGR
Trigger: CCTGCCCTCCCACTGGGGCCAGTACCCAGAGAGTCT...CTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAGACTTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp AGGAACTGTGCCTTGGAGAGAGGTCACTGTGTGAGGGCCAGTGCAGAAGTTGCTGGAATGTCCTCATCATaGCTCATGCCCAGGTTGTGG +
Preference number: 4 (lower is better)
Translates to: RNCALERGHCVRASAEVAGMSSS*LMPRLW
Trigger: CCACAACCTGGGCATGAGCCATGATGAGGACATTCC...AGCAACTTCTGCACTGGCCCTCACACAGTGACCTCTCTCCAAGGCACAGTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp GATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGAGGGCTATACACGGAGGTCCTaGCAGCTTCCATCCATGCAA +
Preference number: 4 (lower is better)
Translates to: DVWSKLAKASERPLVHEGYTRRS*QLPSMQ
Trigger: TTGCATGGATGGAAGCTGCCAGGACCTCCGTGTATA...GCCCTCATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp AGCAAGAGCCACAGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCCACTTGGGTTTCAGCTCTaGGAGGGGCTTGGTGGGAGG +
Preference number: 4 (lower is better)
Translates to: SKSHRKIIPEVGTACAGPLGFQL*EGLGGR
Trigger: CCTCCCACCAAGCCCCTCCCAGAGCTGAAACCCAAG...TGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCTGTGGCTCTTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp CTAAGTCTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGCCCGGGCTTGACTGGTaGTGTCGGGGGTGCAAAGGT +
Preference number: 4 (lower is better)
Translates to: LSLIHEWDVDTGTVPWREPGLDW*CRGCKG
Trigger: ACCTTTGCACCCCCGACACCACCAGTCAAGCCCGGG...CTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAGACTTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp AGCAAGAGCCACAGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCCAGTGTCCATAAGACGCTaGGCAGCCAGAGGCCAAGCA +
Preference number: 4 (lower is better)
Translates to: SKSHRKIIPEVGTACAGPVSIRR*AARGQA
Trigger: TGCTTGGCCTCTGGCTGCTCAGCGTCTTATGGACAC...TGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCTGTGGCTCTTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp CATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGTCACTGTGGTCTCTGTGTAGCTTaGGCCCAGCAGGTCCCTGTT +
Preference number: 4 (lower is better)
Translates to: HTRVGCRYRNCALERGHCGLCVA*AQQVPV
Trigger: AACAGGGACCTGCTGGGCTCAAGCTACACAGAGACC...ACAGTGACCTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp AGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGGGATGTAGATACACTCCAGTCCCGGGCTTaGCTGGTGGTGTCGGGGGTG +
Preference number: 4 (lower is better)
Translates to: RTTSFPFLSLIHEWDVDTLQSRA*LVVSGV
Trigger: CACCCCCGACACCACCAGTCAAGCCCGGGACTGGAG...TGTATCTACATCCCACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp GATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGAGGGCCAGCTGGCTTCACCTTaGATTCATGACAACAGGTAC +
Preference number: 4 (lower is better)
Translates to: DVWSKLAKASERPLVHEGQLASP*IHDNRY
Trigger: GTACCTGTTGTCATGAATGCAAGGTGAAGCCAGCTG...GCCCTCATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp GATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGAGGGCCAAAGGTGTCAATGTTaGTGCCTGTGCCAAGAGCAT +
Preference number: 4 (lower is better)
Translates to: DVWSKLAKASERPLVHEGQRCQC*CLCQEH
Trigger: ATGCTCTTGGCACAGGCAGCAACATTGACACCTTTG...GCCCTCATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp GTGTGCAGGTCCAGCCTGGGTGGTGGTTGTGGTGTTGCTGAAGGAACACATTTAAAGGTTGGCTTGACCTaGTTGGGTTTCAGCTCTGGG +
Preference number: 4 (lower is better)
Translates to: VCRSSLGGGCGVAEGTHLKVGLT*LGFSSG
Trigger: CCCAGAGCTGAAACCCAAGCAGGTCAAGCCAACCTT...TAAATGTGTTCCTTCAGCAACACCACAACCACCACCCAGGCTGGACCTGCACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp AGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCCAGCCTGGGTGGTGGGAATGTCCTCATCATaGCTCATGCCCAGGTTGTGG +
Preference number: 4 (lower is better)
Translates to: RKIIPEVGTACAGPAWVVGMSSS*LMPRLW
Trigger: CCACAACCTGGGCATGAGCCATGATGAGGACATTCC...CACCACCCAGGCTGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp GTGTGCAGGTCCAGCCTGGGTGGTGGTTGTGGTGTTGCTGAAGGAACACATTTAGCCACACTCCTCCTCTaGATTTGTCTCGGAGCCTTT +
Preference number: 4 (lower is better)
Translates to: VCRSSLGGGCGVAEGTHLATLLL*ICLGAF
Trigger: AAAGGCTCCGAGACAAATCCAGAGGAGGAGTGTGGC...TAAATGTGTTCCTTCAGCAACACCACAACCACCACCCAGGCTGGACCTGCACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp ACTCCTGGCATTCTGTCCACCCAGAGACAGACAGACTTGATCACGCCCACTGCATCTTTGGTTTCACTATaGGTCTTGGGGGCTGGTTGG +
Preference number: 4 (lower is better)
Translates to: TPGILSTQRQTDLITPTASLVSL*VLGAGW
Trigger: CCAACCAGCCCCCAAGACCCATAGTGAAACCAAAGA...TGCAGTGGGCGTGATCAAGTCTGTCTGTCTCTGGGTGGACAGAATGCCAGGAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp GATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGAGGGCGGATCAGGTCTAAACTaGTTTGGTATCTTTGGGGCA +
Preference number: 4 (lower is better)
Translates to: DVWSKLAKASERPLVHEGGSGLN*FGIFGA
Trigger: TGCCCCAAAGATACCAAATCAGTTTAGACCTGATCC...GCCCTCATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp CTAAGTCTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGTGCAGGGTGAAAACGTaGCCGCTGGTCCCAAGAGCA +
Preference number: 4 (lower is better)
Translates to: LSLIHEWDVDTGTVPWRECRVKT*PLVPRA
Trigger: TGCTCTTGGGACCAGCGGGCACGTTTTCACCCTGCA...CTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAGACTTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp CTAAGTCTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGCCTCATCATGGCTCATaGCCAGGTTGTGGCCCAGCT +
Preference number: 4 (lower is better)
Translates to: LSLIHEWDVDTGTVPWREPHHGS*PGCGPA
Trigger: AGCTGGGCCACAACCTGGGCATGAGCCATGATGAGG...CTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAGACTTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp ATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGAGGGCACAGCTGGCTTCACCTTaGATTCATGACAACAGGTAC +
Preference number: 4 (lower is better)
Translates to: MYGLSWPRPVRGHWFMRAQLASP*IHDNRY
Trigger: GTACCTGTTGTCATGAATGCAAGGTGAAGCCAGCTG...TGCCCTCATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp GACTCCTGGCATTCTGTCCACCCAGAGACAGACAGACTTGATCACGCCCACTGCAACTTCTGGAACTCTTaGCTGTCTGCAACCACATAC +
Preference number: 4 (lower is better)
Translates to: DSWHSVHPETDRLDHAHCNFWNS*LSATTY
Trigger: GTATGTGGTTGCAGACAGCCAAGAGTTCCAGAAGTT...GCAGTGGGCGTGATCAAGTCTGTCTGTCTCTGGGTGGACAGAATGCCAGGAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp AGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCCAGCCTGGGTGGTGACACACCTCTCCAGCTaGCTTCACCTTGCATTCATG +
Preference number: 4 (lower is better)
Translates to: RKIIPEVGTACAGPAWVVTHLSS*LHLAFM
Trigger: CATGAATGCAAGGTGAAGCCAGCTGGAGAGGTGTGT...CACCACCCAGGCTGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp CATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGTCACTGTAGGCCTGTTCTTAGCTaGCAGGCTGCTGTCCCTTGT +
Preference number: 4 (lower is better)
Translates to: HTRVGCRYRNCALERGHCRPVLS*QAAVPC
Trigger: ACAAGGGACAGCAGCCTGCCAGCTAAGAACAGGCCT...ACAGTGACCTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp TTCTTGTCCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACAACTGGACACAGCACCTaGAGGTGCAGGGGGAGGCCT +
Preference number: 4 (lower is better)
Translates to: FLSQHPKNDVFSFPKSHTTGHST*RCRGRP
Trigger: AGGCCTCCCCCTGCACCTCCAGGTGCTGTGTCCAGT...TGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGGACAAGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp GACAGCAAGAGCCACAGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTAGAGCCATTGGCAGCTaGGTAGGTCTCTGTGTAGCT +
Preference number: 4 (lower is better)
Translates to: DSKSHRKIIPEVGTACAGRAIGS*VGLCVA
Trigger: AGCTACACAGAGACCTACTCAGCTGCCAATGGCTCT...ACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCTGTGGCTCTTGCTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp GTGTGCAGGTCCAGCCTGGGTGGTGGTTGTGGTGTTGCTGAAGGAACACATTTAGAACTCTTGGCTGTCTaGAACCACATACAACTCCAC +
Preference number: 4 (lower is better)
Translates to: VCRSSLGGGCGVAEGTHLELLAV*NHIQLH
Trigger: GTGGAGTTGTATGTGGTTGCAGACAGCCAAGAGTTC...TAAATGTGTTCCTTCAGCAACACCACAACCACCACCCAGGCTGGACCTGCACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp AGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCCAGCCTGGGTGGTGGAACTCTTGGCTGTCTaGAACCACATACAACTCCAC +
Preference number: 4 (lower is better)
Translates to: RKIIPEVGTACAGPAWVVELLAV*NHIQLH
Trigger: GTGGAGTTGTATGTGGTTGCAGACAGCCAAGAGTTC...CACCACCCAGGCTGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp ACTTCTTGTCCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATAGGCGCACGGCCTCTCTaGTCCCCAACTTCTGGAACT +
Preference number: 4 (lower is better)
Translates to: TSCPNTPRTTSFPFLSLIGARPL*SPTSGT
Trigger: AGTTCCAGAAGTTGGGGAGCAGAGAGGCCGTGCGCC...TATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGGACAAGAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp GTGTGCAGGTCCAGCCTGGGTGGTGGTTGTGGTGTTGCTGAAGGAACACATTTATCACACTGCTCTCCATaGTCCACAAACAGGTTTCCA +
Preference number: 4 (lower is better)
Translates to: VCRSSLGGGCGVAEGTHLSHCSP*STNRFP
Trigger: TGGAAACCTGTTTGTGGAGCATGGAGAGCAGTGTGA...TAAATGTGTTCCTTCAGCAACACCACAACCACCACCCAGGCTGGACCTGCACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp CCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGGCAATGTTGCTGCCTGTaGCAAGAGCATGGCAGACTC +
Preference number: 4 (lower is better)
Translates to: PNTPRTTSFPFLSLIHEWQCCCL*QEHGRL
Trigger: GAGTCTGCCATGCTCTTGGCACAGGCAGCAACATTG...CCACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp CTAAGTCTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGCGAGATAGGCTTGGGTaGCACACTCCTCCTCTGGAT +
Preference number: 4 (lower is better)
Translates to: LSLIHEWDVDTGTVPWRERDRLG*HTPPLD
Trigger: ATCCAGAGGAGGAGTGTGGCACCCAAGCCTATCTCG...CTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAGACTTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp AGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCCAGCCTGGGTGGTGCAATCAAGTGGACAGTaGACCCAACTCGGAAAAAGC +
Preference number: 4 (lower is better)
Translates to: RKIIPEVGTACAGPAWVVQSSGQ*TQLGKS
Trigger: GCTTTTTCCGAGTTGGGTCCACTGTCCACTTGATTG...CACCACCCAGGCTGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp AGCAAGAGCCACAGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCCACTGCTCCCCAACTTCTaGAACTCTTGGCTGTCTGCA +
Preference number: 4 (lower is better)
Translates to: SKSHRKIIPEVGTACAGPLLPNF*NSWLSA
Trigger: TGCAGACAGCCAAGAGTTCCAGAAGTTGGGGAGCAG...TGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCTGTGGCTCTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp AAGTCTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGTCCTGTGCCAAGAGCATaGCAGACTCCATGGTTGGAG +
Preference number: 4 (lower is better)
Translates to: KSHTRVGCRYRNCALERGPVPRA*QTPWLE
Trigger: CTCCAACCATGGAGTCTGCCATGCTCTTGGCACAGG...ACCTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAGACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp CTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGTCACTGCCACACTCCTCCTCTaGATTTGTCTCGGAGCCTTT +
Preference number: 4 (lower is better)
Translates to: LIHEWDVDTGTVPWREVTATLLL*ICLGAF
Trigger: AAAGGCTCCGAGACAAATCCAGAGGAGGAGTGTGGC...AGTGACCTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp TCCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGAGGCCTGTTCTTAGCTaGCAGGCTGCTGTCCCTTGT +
Preference number: 4 (lower is better)
Translates to: SQHPKNDVFSFPKSHTRVRPVLS*QAAVPC
Trigger: ACAAGGGACAGCAGCCTGCCAGCTAAGAACAGGCCT...CACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp CATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGTCACTGTTGTCTCAGAAGGGTCTaGAGGCCTGTTCTTAGCTGG +
Preference number: 4 (lower is better)
Translates to: HTRVGCRYRNCALERGHCCLRRV*RPVLSW
Trigger: CCAGCTAAGAACAGGCCTCCAGACCCTTCTGAGACA...ACAGTGACCTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp AGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGGGATGTAGATACAACTGGACACAGCACCTaGAGGTGCAGGGGGAGGCCT +
Preference number: 4 (lower is better)
Translates to: RTTSFPFLSLIHEWDVDTTGHST*RCRGRP
Trigger: AGGCCTCCCCCTGCACCTCCAGGTGCTGTGTCCAGT...TGTATCTACATCCCACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp TCCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGCTGTTCTTTCGAAGGTaGAGGGTGAAAACGTGCCCG +
Preference number: 4 (lower is better)
Translates to: SQHPKNDVFSFPKSHTRVLFFRR*RVKTCP
Trigger: CGGGCACGTTTTCACCCTGCACCTTCGAAAGAACAG...CACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp CTAAGTCTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGCTGTTCTTTCGAAGGTaGAGGGTGAAAACGTGCCCG +
Preference number: 4 (lower is better)
Translates to: LSLIHEWDVDTGTVPWRELFFRR*RVKTCP
Trigger: CGGGCACGTTTTCACCCTGCACCTTCGAAAGAACAG...CTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAGACTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp TTCTTGTCCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACCTCATCATGGCTCATaGCCAGGTTGTGGCCCAGCT +
Preference number: 4 (lower is better)
Translates to: FLSQHPKNDVFSFPKSHTPHHGS*PGCGPA
Trigger: AGCTGGGCCACAACCTGGGCATGAGCCATGATGAGG...TGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGGACAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp CTAAGTCTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGCAATGTTGCTGCCTGTaGCAAGAGCATGGCAGACTC +
Preference number: 4 (lower is better)
Translates to: LSLIHEWDVDTGTVPWREQCCCL*QEHGRL
Trigger: GAGTCTGCCATGCTCTTGGCACAGGCAGCAACATTG...CTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAGACTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp AAGTCTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGTAGGTGTCAATGTTGCTaGCTGTGCCAAGAGCATGGC +
Preference number: 4 (lower is better)
Translates to: KSHTRVGCRYRNCALERGRCQCC*LCQEHG
Trigger: GCCATGCTCTTGGCACAGGCAGCAACATTGACACCT...ACCTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAGACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp AGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCCAGCCTGGGTGGTGAACTTCTGGAACTCTTaGCTGTCTGCAACCACATAC +
Preference number: 4 (lower is better)
Translates to: RKIIPEVGTACAGPAWVVNFWNS*LSATTY
Trigger: GTATGTGGTTGCAGACAGCCAAGAGTTCCAGAAGTT...CACCACCCAGGCTGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp AGCAAGAGCCACAGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCCATTGCACGTTGTCATGTaGGTGCTGCCCTTGCAAGTT +
Preference number: 4 (lower is better)
Translates to: SKSHRKIIPEVGTACAGPLHVVM*VLPLQV
Trigger: AACTTGCAAGGGCAGCACCCACATGACAACGTGCAA...TGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCTGTGGCTCTTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp ACTTCTTGTCCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACGTTCAAGGGGCTTCTaGCCTCCCTCACAGTACAGC +
Preference number: 4 (lower is better)
Translates to: TSCPNTPRTTSFPFLSLIRSRGF*PPSQYS
Trigger: GCTGTACTGTGAGGGAGGCCAGAAGCCCCTTGAACG...TATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGGACAAGAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp AAGTCTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGTGGCAGACTCCATGGTTaGAGGAGAAAGTGCAGAAGG +
Preference number: 4 (lower is better)
Translates to: KSHTRVGCRYRNCALERGGRLHG*RRKCRR
Trigger: CCTTCTGCACTTTCTCCTCCAACCATGGAGTCTGCC...ACCTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAGACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp CTAAGTCTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGCATGGCAGACTCCATaGTTGGAGGAGAAAGTGCAG +
Preference number: 4 (lower is better)
Translates to: LSLIHEWDVDTGTVPWREAWQTP*LEEKVQ
Trigger: CTGCACTTTCTCCTCCAACCATGGAGTCTGCCATGC...CTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAGACTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp ACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGGGATGTAAGAGCCATTGGCAGCTaGGTAGGTCTCTGTGTAGCT +
Preference number: 4 (lower is better)
Translates to: TPRTTSFPFLSLIHEWDVRAIGS*VGLCVA
Trigger: AGCTACACAGAGACCTACTCAGCTGCCAATGGCTCT...TACATCCCACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp ACTTCTTGTCCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATATCAGGTTGGTATCTTTaGCCCCACAGGTCCCAGCCT +
Preference number: 4 (lower is better)
Translates to: TSCPNTPRTTSFPFLSLISGWYL*PHRSQP
Trigger: AGGCTGGGACCTGTGGGGTCAAAGATACCAACCTGA...TATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGGACAAGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp ACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGGGATGTACACCCACGAACCGGTTaGCATCTGGAACATTGGTCA +
Preference number: 4 (lower is better)
Translates to: TPRTTSFPFLSLIHEWDVHPRTG*HLEHWS
Trigger: TGACCAATGTTCCAGATGTCAACCGGTTCGTGGGTG...TACATCCCACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp CATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGTCACTGTTTCACCTTGCATTCATaGCAACAGGTACCACTGGCA +
Preference number: 4 (lower is better)
Translates to: HTRVGCRYRNCALERGHCFTLHS*QQVPLA
Trigger: TGCCAGTGGTACCTGTTGTCATGAATGCAAGGTGAA...ACAGTGACCTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp CTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGTCACTTTCACCTTGCATTCATaGCAACAGGTACCACTGGCA +
Preference number: 4 (lower is better)
Translates to: LIHEWDVDTGTVPWREVTFTLHS*QQVPLA
Trigger: TGCCAGTGGTACCTGTTGTCATGAATGCAAGGTGAA...AGTGACCTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp ACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGGGATGTAGGTTGGAGGAGAAAGTaGAGAAGGAGCGTTCAAGGG +
Preference number: 4 (lower is better)
Translates to: TPRTTSFPFLSLIHEWDVGWRRK*RRSVQG
Trigger: CCCTTGAACGCTCCTTCTGCACTTTCTCCTCCAACC...TACATCCCACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp AAGTCTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGTACACACCTCTCCAGCTaGCTTCACCTTGCATTCATG +
Preference number: 4 (lower is better)
Translates to: KSHTRVGCRYRNCALERGTHLSS*LHLAFM
Trigger: CATGAATGCAAGGTGAAGCCAGCTGGAGAGGTGTGT...ACCTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAGACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp ACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGGGATGTATGTCTCAGAAGGGTCTaGAGGCCTGTTCTTAGCTGG +
Preference number: 4 (lower is better)
Translates to: TPRTTSFPFLSLIHEWDVCLRRV*RPVLSW
Trigger: CCAGCTAAGAACAGGCCTCCAGACCCTTCTGAGACA...TACATCCCACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp AGCAAGAGCCACAGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCCATTTCACTATGGGTCTTaGGGGCTGGTTGGTAGAAAC +
Preference number: 4 (lower is better)
Translates to: SKSHRKIIPEVGTACAGPFHYGS*GLVGRN
Trigger: GTTTCTACCAACCAGCCCCCAAGACCCATAGTGAAA...TGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCTGTGGCTCTTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR TCA 90 bp GACAGCAAGAGCCACAGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTGGATCAGGTCTAAACTaGTTTGGTATCTTTGGGGCA +
Preference number: 4 (lower is better)
Translates to: DSKSHRKIIPEVGTACAGGSGLN*FGIFGA
Trigger: TGCCCCAAAGATACCAAATCAGTTTAGACCTGATCC...ACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCTGTGGCTCTTGCTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp GACAGCAAGAGCCACAGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCTGTTGCAGATGCTTTaGCTGATACATCGCATGTTG +
Preference number: 4 (lower is better)
Translates to: DSKSHRKIIPEVGTACAGLLQML*LIHRML
Trigger: CAACATGCGATGTATCAGGCAAAGCATCTGCAACAG...ACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCTGTGGCTCTTGCTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp CCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGGCTGTTGCAGATGCTTTaGCTGATACATCGCATGTTG +
Preference number: 4 (lower is better)
Translates to: PNTPRTTSFPFLSLIHEWLLQML*LIHRML
Trigger: CAACATGCGATGTATCAGGCAAAGCATCTGCAACAG...CCACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp TCCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGTCACACTGCTCTCCATaGTCCACAAACAGGTTTCCA +
Preference number: 4 (lower is better)
Translates to: SQHPKNDVFSFPKSHTRVSHCSP*STNRFP
Trigger: TGGAAACCTGTTTGTGGAGCATGGAGAGCAGTGTGA...CACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp ACTTCTTGTCCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATAGGTTGGAGGAGAAAGTaGAGAAGGAGCGTTCAAGGG +
Preference number: 4 (lower is better)
Translates to: TSCPNTPRTTSFPFLSLIGWRRK*RRSVQG
Trigger: CCCTTGAACGCTCCTTCTGCACTTTCTCCTCCAACC...TATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGGACAAGAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp ACTTCTTGTCCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACTGCTCCCCAACTTCTaGAACTCTTGGCTGTCTGCA +
Preference number: 4 (lower is better)
Translates to: TSCPNTPRTTSFPFLSLILLPNF*NSWLSA
Trigger: TGCAGACAGCCAAGAGTTCCAGAAGTTGGGGAGCAG...TATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGGACAAGAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp CTAAGTCTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGTTTCACTATGGGTCTTaGGGGCTGGTTGGTAGAAAC +
Preference number: 4 (lower is better)
Translates to: LSLIHEWDVDTGTVPWREFHYGS*GLVGRN
Trigger: GTTTCTACCAACCAGCCCCCAAGACCCATAGTGAAA...CTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAGACTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp ACTTCTTGTCCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATATTGTCATGTGGGTGCTaGCCTTGCAAGTTCTGTTCC +
Preference number: 4 (lower is better)
Translates to: TSCPNTPRTTSFPFLSLILSCGC*PCKFCS
Trigger: GGAACAGAACTTGCAAGGGCAGCACCCACATGACAA...TATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGGACAAGAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR GCA 90 bp TTCTTGTCCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACATTGTCATGTGGGTGCTaGCCTTGCAAGTTCTGTTCC +
Preference number: 4 (lower is better)
Translates to: FLSQHPKNDVFSFPKSHTLSCGC*PCKFCS
Trigger: GGAACAGAACTTGCAAGGGCAGCACCCACATGACAA...TGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGGACAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp ACTTCTTGTCCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACAATCAAGTGGACAGTaGACCCAACTCGGAAAAAGC +
Preference number: 4 (lower is better)
Translates to: TSCPNTPRTTSFPFLSLIQSSGQ*TQLGKS
Trigger: GCTTTTTCCGAGTTGGGTCCACTGTCCACTTGATTG...TATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGGACAAGAAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp AGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGGGATGTAGATACATTGCACGTTGTCATGTaGGTGCTGCCCTTGCAAGTT +
Preference number: 4 (lower is better)
Translates to: RTTSFPFLSLIHEWDVDTLHVVM*VLPLQV
Trigger: AACTTGCAAGGGCAGCACCCACATGACAACGTGCAA...TGTATCTACATCCCACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CCA 90 bp AGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGGGATGTAGATACATATACACGGAGGTCCTaGCAGCTTCCATCCATGCAA +
Preference number: 4 (lower is better)
Translates to: RTTSFPFLSLIHEWDVDTYTRRS*QLPSMQ
Trigger: TTGCATGGATGGAAGCTGCCAGGACCTCCGTGTATA...TGTATCTACATCCCACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS CCA 90 bp CCCGAGCACCTGGCCCCCACAGATCCCGGCACTGCTGTGCCAGGGTaGGACAGCTCCCATCAAAGCAGTAGCCCCCTGGGCAGGGAGTGC +
Preference number: 5 (lower is better)
Translates to: PEHLAPTDPGTAVPG*DSSHQSSSPLGREC
Trigger: GCACTCCCTGCCCAGGGGGCTACTGCTTTGATGGGAGCTGTCCCACCCTGGCACAGCAGTGCCGGGATCTGTGGGGGCCAGGTGCTCGGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS GCA 90 bp AGCTCAGACTCTCTGGGTACTGGCCCCAGTGGGAGGGCAGGGCTCTaGGGGAGCGGGATGCAGCTAGGCGCCGAGGCCAAACCACTTCAT +
Preference number: 5 (lower is better)
Translates to: SSDSLGTGPSGRAGL*GSGMQLGAEAKPLH
Trigger: ATGAAGTGGTTTGGCCTCGGCGCCTAGCTGCATCCCGCTCCCGCAGAGCCCTGCCCTCCCACTGGGGCCAGTACCCAGAGAGTCTGAGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 90 bp GGTGAAAACGTGCCCGCTGGTCCCAAGAGCATAGCTCAGACTCTCTaGGTACTGGCCCCAGTGGGAGGGCAGGGCTCTGCGGGAGCGGGA +
Preference number: 5 (lower is better)
Translates to: GENVPAGPKSIAQTL*VLAPVGGQGSAGAG
Trigger: TCCCGCTCCCGCAGAGCCCTGCCCTCCCACTGGGGCCAGTACCCAGAGAGTCTGAGCTATGCTCTTGGGACCAGCGGGCACGTTTTCACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 90 bp AGGGATGCTAAAGGTATAGCAGGAGTCGGCTGCTACCCGAGCACCTaGCCCCCACAGATCCCGGCACTGCTGTGCCAGGGTGGGACAGCT +
Preference number: 5 (lower is better)
Translates to: RDAKGIAGVGCYPST*PPQIPALLCQGGTA
Trigger: AGCTGTCCCACCCTGGCACAGCAGTGCCGGGATCTGTGGGGGCCAGGTGCTCGGGTAGCAGCCGACTCCTGCTATACCTTTAGCATCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 90 bp CTGAGTTGCTCCAGGCACCGTCCCTCCAGTCCCGGGCTTGACTGGTaGTGTCGGGGGTGCAAAGGTTGGCTTGACCTGCTTGGGTTTCAG +
Preference number: 5 (lower is better)
Translates to: LSCSRHRPSSPGLDW*CRGCKGWLDLLGFQ
Trigger: CTGAAACCCAAGCAGGTCAAGCCAACCTTTGCACCCCCGACACCACCAGTCAAGCCCGGGACTGGAGGGACGGTGCCTGGAGCAACTCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS CCA 90 bp TCCCTGAGTTGCTCCAGGCACCGTCCCTCCAGTCCCGGGCTTGACTaGTGGTGTCGGGGGTGCAAAGGTTGGCTTGACCTGCTTGGGTTT +
Preference number: 5 (lower is better)
Translates to: SLSCSRHRPSSPGLD*WCRGCKGWLDLLGF
Trigger: AAACCCAAGCAGGTCAAGCCAACCTTTGCACCCCCGACACCACCAGTCAAGCCCGGGACTGGAGGGACGGTGCCTGGAGCAACTCAGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS TCA 90 bp TTCTGGATGGGGACCTTCAGAGCAACCTTTGGCTCACCAGCTCCCTaGGTTGCTCCAGGCACCGTCCCTCCAGTCCCGGGCTTGACTGGT +
Preference number: 5 (lower is better)
Translates to: FWMGTFRATFGSPAP*VAPGTVPPVPGLTG
Trigger: ACCAGTCAAGCCCGGGACTGGAGGGACGGTGCCTGGAGCAACTCAGGGAGCTGGTGAGCCAAAGGTTGCTCTGAAGGTCCCCATCCAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS GCA 90 bp GGGTGGGACAGCTCCCATCAAAGCAGTAGCCCCCTGGGCAGGGAGTaGCATTCTGTTGGAAGGCATCTTCGGGACATGTTGGCTTCCGGC +
Preference number: 5 (lower is better)
Translates to: GWDSSHQSSSPLGRE*HSVGRHLRDMLASG
Trigger: GCCGGAAGCCAACATGTCCCGAAGATGCCTTCCAACAGAATGGCACTCCCTGCCCAGGGGGCTACTGCTTTGATGGGAGCTGTCCCACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 90 bp CTGCTGTGCCAGGGTGGGACAGCTCCCATCAAAGCAGTAGCCCCCTaGGCAGGGAGTGCCATTCTGTTGGAAGGCATCTTCGGGACATGT +
Preference number: 5 (lower is better)
Translates to: LLCQGGTAPIKAVAP*AGSAILLEGIFGTC
Trigger: ACATGTCCCGAAGATGCCTTCCAACAGAATGGCACTCCCTGCCCAGGGGGCTACTGCTTTGATGGGAGCTGTCCCACCCTGGCACAGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS-3UTR CAA 90 bp ACTCCTGGCATTCTGTCCACCCAGAGACAGACAGACTTGATCACGCCCACTGCAAGCCCCGAGATAGGCTaGGGTGCCACACTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: TPGILSTQRQTDLITPTASPEIG*GATLLL
Trigger: GAGGAGGAGTGTGGCACCCAAGCCTATCTCGGGGCT...TGCAGTGGGCGTGATCAAGTCTGTCTGTCTCTGGGTGGACAGAATGCCAGGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS TCA 90 bp TCGGAAAAAGCCCCTGAGGCCAGCACAGGTGCTAATACTGGCAGCTaGGCCCTCGTACCCTTCCACATGGCCTTGGTAGAGGCAATGGTC +
Preference number: 5 (lower is better)
Translates to: SEKAPEASTGANTGS*ALVPFHMALVEAMV
Trigger: GACCATTGCCTCTACCAAGGCCATGTGGAAGGGTACGAGGGCTCAGCTGCCAGTATTAGCACCTGTGCTGGCCTCAGGGGCTTTTTCCGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS TCA 90 bp ACATCTGCCAGCCGCTGTACACAGTTGGGTGGTGCCCAGCCCTTGTaGCAGTGGCACTCCCTCTTGTGGTTGCATACCCCATGGTTGTTG +
Preference number: 5 (lower is better)
Translates to: TSASRCTQLGGAQPL*QWHSLLWLHTPWLL
Trigger: CAACAACCATGGGGTATGCAACCACAAGAGGGAGTGCCACTGTCACAAGGGCTGGGCACCACCCAACTGTGTACAGCGGCTGGCAGATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS GCA 90 bp CCACGTGGTTTACAACCTCCAGCACTCGCTGGCGCACGGCCTCTCTaGTCCCCAACTTCTGGAACTCTTGGCTGTCTGCAACCACATACA +
Preference number: 5 (lower is better)
Translates to: PRGLQPPALAGARPL*SPTSGTLGCLQPHT
Trigger: TGTATGTGGTTGCAGACAGCCAAGAGTTCCAGAAGTTGGGGAGCAGAGAGGCCGTGCGCCAGCGAGTGCTGGAGGTTGTAAACCACGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS-3UTR CAA 90 bp CCAGTGCAGAAGTTGCTGGGAGGGGACTCCTGGCATTCTGTCCACCCAGAGACAGGGAGTGCCATTCTGTaGGAAGGCATCTTCGGGACA +
Preference number: 5 (lower is better)
Translates to: PVQKLLGGDSWHSVHPETGSAIL*EGIFGT
Trigger: TGTCCCGAAGATGCCTTCCAACAGAATGGCACTCCC...TGTCTCTGGGTGGACAGAATGCCAGGAGTCCCCTCCCAGCAACTTCTGCACTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp AACAGCGTGTGCAGGTCCAGCCTGGGTGGTGGTTGTGGTGTTGCTGAAGGAACAGAGTACATCCTCCCATaGCAGCCCGGAGGGATGCTA +
Preference number: 5 (lower is better)
Translates to: NSVCRSSLGGGCGVAEGTEYILP*QPGGML
Trigger: TAGCATCCCTCCGGGCTGCAATGGGAGGATGTACTC...TGTTCCTTCAGCAACACCACAACCACCACCCAGGCTGGACCTGCACACGCTGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS TCA 90 bp TGTAGCTTGAGCCCAGCAGGTCCCTGTTCTTTCGAAGGTGCAGGGTaGAAACGTGCCCGCTGGTCCCAAGAGCATAGCTCAGACTCTCTG +
Preference number: 5 (lower is better)
Translates to: CSLSPAGPCSFEGAG*KRARWSQEHSSDSL
Trigger: CAGAGAGTCTGAGCTATGCTCTTGGGACCAGCGGGCACGTTTTCACCCTGCACCTTCGAAAGAACAGGGACCTGCTGGGCTCAAGCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS GCA 90 bp TGCCTGTGCCAAGAGCATGGCAGACTCCATGGTTGGAGGAGAAAGTaGAGAAGGAGCGTTCAAGGGGCTTCTGGCCTCCCTCACAGTACA +
Preference number: 5 (lower is better)
Translates to: CLCQEHGRLHGWRRK*RRSVQGASGLPHST
Trigger: TGTACTGTGAGGGAGGCCAGAAGCCCCTTGAACGCTCCTTCTGCACTTTCTCCTCCAACCATGGAGTCTGCCATGCTCTTGGCACAGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 90 bp GATGCAGCTAGGCGCCGAGGCCAAACCACTTCATACTGTTTCACATaGGGCAAAGGAGGTCCAGGGGCTACTGGTGTCCATAAGACGCTG +
Preference number: 5 (lower is better)
Translates to: DAARRRGQTTSYCFT*GKGGPGATGVHKTL
Trigger: CAGCGTCTTATGGACACCAGTAGCCCCTGGACCTCCTTTGCCCCATGTGAAACAGTATGAAGTGGTTTGGCCTCGGCGCCTAGCTGCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000148670.8
ENSMUST00000173209.2
CDS-3UTR CAA 90 bp ACTCCTGGCATTCTGTCCACCCAGAGACAGACAGACTTGATCACGCCCACTGCACCCTTCCACATGGCCTaGGTAGAGGCAATGGTCCTG +
Preference number: 5 (lower is better)
Translates to: TPGILSTQRQTDLITPTAPFHMA*VEAMVL
Trigger: CAGGACCATTGCCTCTACCAAGGCCATGTGGAAGGG...TGCAGTGGGCGTGATCAAGTCTGTCTGTCTCTGGGTGGACAGAATGCCAGGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp CAGAAGTTGCTGGGAGGGGACTCCTGGCATTCTGTCCACCCAGAGACAGACAGAATGTGGGTGCTGCCCTaGCAAGTTCTGTTCCCTCCA +
Preference number: 5 (lower is better)
Translates to: QKLLGGDSWHSVHPETDRMWVLP*QVLFPP
Trigger: TGGAGGGAACAGAACTTGCAAGGGCAGCACCCACAT...TCTGTCTGTCTCTGGGTGGACAGAATGCCAGGAGTCCCCTCCCAGCAACTTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp ATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGAGGGCACCTTCAGAGCAACCTTaGGCTCACCAGCTCCCTGAG +
Preference number: 5 (lower is better)
Translates to: MYGLSWPRPVRGHWFMRAPSEQP*AHQLPE
Trigger: CTCAGGGAGCTGGTGAGCCAAAGGTTGCTCTGAAGG...TGCCCTCATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS TCA 90 bp TTACTGAGACGACACACCTCTCCAGCTGGCTTCACCTTGCATTCATaGCAACAGGTACCACTGGCACACTCTGCCCCCTTGACCAGCTGG +
Preference number: 5 (lower is better)
Translates to: LLRRHTSPAGFTLHS*QQVPLAHSAPLTSW
Trigger: CCAGCTGGTCAAGGGGGCAGAGTGTGCCAGTGGTACCTGTTGTCATGAATGCAAGGTGAAGCCAGCTGGAGAGGTGTGTCGTCTCAGTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 90 bp TGTCAATGTTGCTGCCTGTGCCAAGAGCATGGCAGACTCCATGGTTaGAGGAGAAAGTGCAGAAGGAGCGTTCAAGGGGCTTCTGGCCTC +
Preference number: 5 (lower is better)
Translates to: CQCCCLCQEHGRLHG*RRKCRRSVQGASGL
Trigger: GAGGCCAGAAGCCCCTTGAACGCTCCTTCTGCACTTTCTCCTCCAACCATGGAGTCTGCCATGCTCTTGGCACAGGCAGCAACATTGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS-3UTR CAA 90 bp GTGTGCAGGTCCAGCCTGGGTGGTGGTTGTGGTGTTGCTGAAGGAACACATTTACCCTTCCACATGGCCTaGGTAGAGGCAATGGTCCTG +
Preference number: 5 (lower is better)
Translates to: VCRSSLGGGCGVAEGTHLPFHMA*VEAMVL
Trigger: CAGGACCATTGCCTCTACCAAGGCCATGTGGAAGGG...TAAATGTGTTCCTTCAGCAACACCACAACCACCACCCAGGCTGGACCTGCACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp GATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGAGGGCGGTCCCAGCCTTCTGTaGCAGATGCTTTGCCTGATA +
Preference number: 5 (lower is better)
Translates to: DVWSKLAKASERPLVHEGGPSLL*QMLCLI
Trigger: TATCAGGCAAAGCATCTGCAACAGAAGGCTGGGACC...GCCCTCATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp GACTCCTGGCATTCTGTCCACCCAGAGACAGACAGACTTGATCACGCCCACTGCTTGACATCTGGAACATaGGTCAGGCAGCCTGTCTGG +
Preference number: 5 (lower is better)
Translates to: DSWHSVHPETDRLDHAHCLTSGT*VRQPVW
Trigger: CCAGACAGGCTGCCTGACCAATGTTCCAGATGTCAA...GCAGTGGGCGTGATCAAGTCTGTCTGTCTCTGGGTGGACAGAATGCCAGGAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp AGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCCAGCCTGGGTGGTGGAGTACATCCTCCCATaGCAGCCCGGAGGGATGCTA +
Preference number: 5 (lower is better)
Translates to: RKIIPEVGTACAGPAWVVEYILP*QPGGML
Trigger: TAGCATCCCTCCGGGCTGCAATGGGAGGATGTACTC...CACCACCCAGGCTGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp GACTCCTGGCATTCTGTCCACCCAGAGACAGACAGACTTGATCACGCCCACTGCTGGCAGACTCCATGGTaGGAGGAGAAAGTGCAGAAG +
Preference number: 5 (lower is better)
Translates to: DSWHSVHPETDRLDHAHCWQTPW*EEKVQK
Trigger: CTTCTGCACTTTCTCCTCCAACCATGGAGTCTGCCA...GCAGTGGGCGTGATCAAGTCTGTCTGTCTCTGGGTGGACAGAATGCCAGGAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp CCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGGAGCCCCGAGATAGGCTaGGGTGCCACACTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: PNTPRTTSFPFLSLIHEWSPEIG*GATLLL
Trigger: GAGGAGGAGTGTGGCACCCAAGCCTATCTCGGGGCT...CCACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp AACAGCGTGTGCAGGTCCAGCCTGGGTGGTGGTTGTGGTGTTGCTGAAGGAACAGGTCTTGGGGGCTGGTaGGTAGAAACTGTCTCAGAA +
Preference number: 5 (lower is better)
Translates to: NSVCRSSLGGGCGVAEGTGLGGW*VETVSE
Trigger: TTCTGAGACAGTTTCTACCAACCAGCCCCCAAGACC...TGTTCCTTCAGCAACACCACAACCACCACCCAGGCTGGACCTGCACACGCTGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp ATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGAGGGCAGGTGCAAAGGTTGGCTaGACCTGCTTGGGTTTCAGC +
Preference number: 5 (lower is better)
Translates to: MYGLSWPRPVRGHWFMRAGAKVG*TCLGFS
Trigger: GCTGAAACCCAAGCAGGTCAAGCCAACCTTTGCACC...TGCCCTCATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS CCA 90 bp AAGGTGTCAATGTTGCTGCCTGTGCCAAGAGCATGGCAGACTCCATaGTTGGAGGAGAAAGTGCAGAAGGAGCGTTCAAGGGGCTTCTGG +
Preference number: 5 (lower is better)
Translates to: KVSMLLPVPRAWQTP*LEEKVQKERSRGFW
Trigger: CCAGAAGCCCCTTGAACGCTCCTTCTGCACTTTCTCCTCCAACCATGGAGTCTGCCATGCTCTTGGCACAGGCAGCAACATTGACACCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 90 bp TGTCGGGGGTGCAAAGGTTGGCTTGACCTGCTTGGGTTTCAGCTCTaGGAGGGGCTTGGTGGGAGGATCAGGTCTAAACTGATTTGGTAT +
Preference number: 5 (lower is better)
Translates to: CRGCKGWLDLLGFQL*EGLGGRIRSKLIWY
Trigger: ATACCAAATCAGTTTAGACCTGATCCTCCCACCAAGCCCCTCCCAGAGCTGAAACCCAAGCAGGTCAAGCCAACCTTTGCACCCCCGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp AACAGCGTGTGCAGGTCCAGCCTGGGTGGTGGTTGTGGTGTTGCTGAAGGAACACCTAGGTCATTCAGGTaGGTATCTTTGACCCCACAG +
Preference number: 5 (lower is better)
Translates to: NSVCRSSLGGGCGVAEGTPRSFR*VSLTPQ
Trigger: CTGTGGGGTCAAAGATACCAACCTGAATGACCTAGG...TGTTCCTTCAGCAACACCACAACCACCACCCAGGCTGGACCTGCACACGCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp CAGAAGTTGCTGGGAGGGGACTCCTGGCATTCTGTCCACCCAGAGACAGACAGATCCTCCAGGTCACATTaGTCCTTACTGAGACGACAC +
Preference number: 5 (lower is better)
Translates to: QKLLGGDSWHSVHPETDRSSRSH*SLLRRH
Trigger: GTGTCGTCTCAGTAAGGACAAATGTGACCTGGAGGA...TCTGTCTGTCTCTGGGTGGACAGAATGCCAGGAGTCCCCTCCCAGCAACTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS TCA 90 bp CCCTCCAGGACAAGAAGTTCTCCAGTGTCACGTTGGCATAGCGGCTaGTGTAGAATTTGTCCTTGTTCCAGATCTCCAGGCCCACCAGGA +
Preference number: 5 (lower is better)
Translates to: PSRTRSSPVSRWHSG*CRICPCSRSPGPPG
Trigger: TCCTGGTGGGCCTGGAGATCTGGAACAAGGACAAATTCTACATCAGCCGCTATGCCAACGTGACACTGGAGAACTTCTTGTCCTGGAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS GCA 90 bp GCCAGTCCAACAGTGCTCCCAATGAAATCAACCCCCGTGATAAGTTaGACGTTGTCATGTGGGTGCTGCCCTTGCAAGTTCTGTTCCCTC +
Preference number: 5 (lower is better)
Translates to: ASPTVLPMKSTPVIS*TLSCGCCPCKFCSL
Trigger: GAGGGAACAGAACTTGCAAGGGCAGCACCCACATGACAACGTGCAACTTATCACGGGGGTTGATTTCATTGGGAGCACTGTTGGACTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS-3UTR CAA 90 bp CTAAGTCTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGTCCTGCTCCTGCAGTaGCTCTGTCACCTCAGAGCC +
Preference number: 5 (lower is better)
Translates to: LSLIHEWDVDTGTVPWREVLLLQ*LCHLRA
Trigger: GGCTCTGAGGTGACAGAGCAACTGCAGGAGCAGGAC...CTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAGACTTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp TCCCAACACCCCAAGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGGTCCTGCTCCTGCAGTaGCTCTGTCACCTCAGAGCC +
Preference number: 5 (lower is better)
Translates to: SQHPKNDVFSFPKSHTRVVLLLQ*LCHLRA
Trigger: GGCTCTGAGGTGACAGAGCAACTGCAGGAGCAGGAC...CACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCTTGGGGTGTTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp AGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCCAGCCTGGGTGGTGTTGACATCTGGAACATaGGTCAGGCAGCCTGTCTGG +
Preference number: 5 (lower is better)
Translates to: RKIIPEVGTACAGPAWVVLTSGT*VRQPVW
Trigger: CCAGACAGGCTGCCTGACCAATGTTCCAGATGTCAA...CACCACCCAGGCTGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp GATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGAGGGCTTGCATACCCCATGGTaGTTGCATTTAGCAGAGCAG +
Preference number: 5 (lower is better)
Translates to: DVWSKLAKASERPLVHEGLHTPW*LHLAEQ
Trigger: CTGCTCTGCTAAATGCAACAACCATGGGGTATGCAA...GCCCTCATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp AACAGCGTGTGCAGGTCCAGCCTGGGTGGTGGTTGTGGTGTTGCTGAAGGAACATTGCATACCCCATGGTaGTTGCATTTAGCAGAGCAG +
Preference number: 5 (lower is better)
Translates to: NSVCRSSLGGGCGVAEGTLHTPW*LHLAEQ
Trigger: CTGCTCTGCTAAATGCAACAACCATGGGGTATGCAA...TGTTCCTTCAGCAACACCACAACCACCACCCAGGCTGGACCTGCACACGCTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp CATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGTCACTGTGTTGGCTTGACCTGCTaGGGTTTCAGCTCTGGGAGG +
Preference number: 5 (lower is better)
Translates to: HTRVGCRYRNCALERGHCVGLTC*GFSSGR
Trigger: CCTCCCAGAGCTGAAACCCAAGCAGGTCAAGCCAAC...ACAGTGACCTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp CTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGTCACTGTTGGCTTGACCTGCTaGGGTTTCAGCTCTGGGAGG +
Preference number: 5 (lower is better)
Translates to: LIHEWDVDTGTVPWREVTVGLTC*GFSSGR
Trigger: CCTCCCAGAGCTGAAACCCAAGCAGGTCAAGCCAAC...AGTGACCTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp AGCAAGAGCCACAGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCCAATGTGGGTGCTGCCCTaGCAAGTTCTGTTCCCTCCA +
Preference number: 5 (lower is better)
Translates to: SKSHRKIIPEVGTACAGPMWVLP*QVLFPP
Trigger: TGGAGGGAACAGAACTTGCAAGGGCAGCACCCACAT...TGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCTGTGGCTCTTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp CATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGTCACTGTGGGAGTGCCATTCTGTaGGAAGGCATCTTCGGGACA +
Preference number: 5 (lower is better)
Translates to: HTRVGCRYRNCALERGHCGSAIL*EGIFGT
Trigger: TGTCCCGAAGATGCCTTCCAACAGAATGGCACTCCC...ACAGTGACCTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp AACAGCGTGTGCAGGTCCAGCCTGGGTGGTGGTTGTGGTGTTGCTGAAGGAACACATACCCCATGGTTGTaGCATTTAGCAGAGCAGTTT +
Preference number: 5 (lower is better)
Translates to: NSVCRSSLGGGCGVAEGTHTPWL*HLAEQF
Trigger: AAACTGCTCTGCTAAATGCAACAACCATGGGGTATG...TGTTCCTTCAGCAACACCACAACCACCACCCAGGCTGGACCTGCACACGCTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS CCA 90 bp GCTCCCAATGAAATCAACCCCCGTGATAAGTTGCACGTTGTCATGTaGGTGCTGCCCTTGCAAGTTCTGTTCCCTCCAGGACAAGAAGTT +
Preference number: 5 (lower is better)
Translates to: APNEINPRDKLHVVM*VLPLQVLFPPGQEV
Trigger: AACTTCTTGTCCTGGAGGGAACAGAACTTGCAAGGGCAGCACCCACATGACAACGTGCAACTTATCACGGGGGTTGATTTCATTGGGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 90 bp AATACCAGCTCAAAGGTGTCAATGTTGCTGCCTGTGCCAAGAGCATaGCAGACTCCATGGTTGGAGGAGAAAGTGCAGAAGGAGCGTTCA +
Preference number: 5 (lower is better)
Translates to: NTSSKVSMLLPVPRA*QTPWLEEKVQKERS
Trigger: TGAACGCTCCTTCTGCACTTTCTCCTCCAACCATGGAGTCTGCCATGCTCTTGGCACAGGCAGCAACATTGACACCTTTGAGCTGGTATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS-3UTR CAA 90 bp ATGTATGGTCTAAGCTGGCCAAGGCCAGTGAGAGGCCACTGGTTCATGAGGGCACATACCCCATGGTTGTaGCATTTAGCAGAGCAGTTT +
Preference number: 5 (lower is better)
Translates to: MYGLSWPRPVRGHWFMRAHTPWL*HLAEQF
Trigger: AAACTGCTCTGCTAAATGCAACAACCATGGGGTATG...TGCCCTCATGAACCAGTGGCCTCTCACTGGCCTTGGCCAGCTTAGACCATACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp AGCAAGAGCCACAGAAAGATTATTCCTGAGGTAGGAACAGCGTGTGCAGGTCCAGGTCTTGGGGGCTGGTaGGTAGAAACTGTCTCAGAA +
Preference number: 5 (lower is better)
Translates to: SKSHRKIIPEVGTACAGPGLGGW*VETVSE
Trigger: TTCTGAGACAGTTTCTACCAACCAGCCCCCAAGACC...TGGACCTGCACACGCTGTTCCTACCTCAGGAATAATCTTTCTGTGGCTCTTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp AAGTCTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGTGGTGCAAAGGTTGGCTaGACCTGCTTGGGTTTCAGC +
Preference number: 5 (lower is better)
Translates to: KSHTRVGCRYRNCALERGGAKVG*TCLGFS
Trigger: GCTGAAACCCAAGCAGGTCAAGCCAACCTTTGCACC...ACCTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAGACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS TCA 90 bp ATATTTCTAATGCCCGAGGCCCTAGGTCATTCAGGTTGGTATCTTTaGCCCCACAGGTCCCAGCCTTCTGTTGCAGATGCTTTGCCTGAT +
Preference number: 5 (lower is better)
Translates to: IFLMPEALGHSGWYL*PHRSQPSVADALPD
Trigger: ATCAGGCAAAGCATCTGCAACAGAAGGCTGGGACCTGTGGGGTCAAAGATACCAACCTGAATGACCTAGGGCCTCGGGCATTAGAAATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS GCA 90 bp ATGAAATCAACCCCCGTGATAAGTTGCACGTTGTCATGTGGGTGCTaGCCTTGCAAGTTCTGTTCCCTCCAGGACAAGAAGTTCTCCAGT +
Preference number: 5 (lower is better)
Translates to: MKSTPVISCTLSCGC*PCKFCSLQDKKFSS
Trigger: ACTGGAGAACTTCTTGTCCTGGAGGGAACAGAACTTGCAAGGGCAGCACCCACATGACAACGTGCAACTTATCACGGGGGTTGATTTCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS-3UTR CAA 90 bp AAGTCTCATACACGAGTGGGATGTAGATACAGGAACTGTGCCTTGGAGAGAGGTTCCTCCAGGTCACATTaGTCCTTACTGAGACGACAC +
Preference number: 5 (lower is better)
Translates to: KSHTRVGCRYRNCALERGSSRSH*SLLRRH
Trigger: GTGTCGTCTCAGTAAGGACAAATGTGACCTGGAGGA...ACCTCTCTCCAAGGCACAGTTCCTGTATCTACATCCCACTCGTGTATGAGACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp AGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGGGATGTAGATACACCTTCAGAGCAACCTTaGGCTCACCAGCTCCCTGAG +
Preference number: 5 (lower is better)
Translates to: RTTSFPFLSLIHEWDVDTPSEQP*AHQLPE
Trigger: CTCAGGGAGCTGGTGAGCCAAAGGTTGCTCTGAAGG...TGTATCTACATCCCACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp AGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGGGATGTAGATACATGGCAGACTCCATGGTaGGAGGAGAAAGTGCAGAAG +
Preference number: 5 (lower is better)
Translates to: RTTSFPFLSLIHEWDVDTWQTPW*EEKVQK
Trigger: CTTCTGCACTTTCTCCTCCAACCATGGAGTCTGCCA...TGTATCTACATCCCACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS-3UTR CAA 90 bp AGAACGACGTCTTTTCCTTTCCTAAGTCTCATACACGAGTGGGATGTAGATACACCTAGGTCATTCAGGTaGGTATCTTTGACCCCACAG +
Preference number: 5 (lower is better)
Translates to: RTTSFPFLSLIHEWDVDTPRSFR*VSLTPQ
Trigger: CTGTGGGGTCAAAGATACCAACCTGAATGACCTAGG...TGTATCTACATCCCACTCGTGTATGAGACTTAGGAAAGGAAAAGACGTCGTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS GCA 72 bp TCTCTGGGTACTGGCCCCAGTGGGAGGGCAGGGCTCTaGGGGAGCGGGATGCAGCTAGGCGCCGAGGCCAAA +
Preference number: 6 (lower is better)
Translates to: SLGTGPSGRAGL*GSGMQLGAEAK
Trigger: TTTGGCCTCGGCGCCTAGCTGCATCCCGCTCCCGCAGAGCCCTGCCCTCCCACTGGGGCCAGTACCCAGAGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 72 bp CTGGCCCCCACAGATCCCGGCACTGCTGTGCCAGGGTaGGACAGCTCCCATCAAAGCAGTAGCCCCCTGGGC +
Preference number: 6 (lower is better)
Translates to: LAPTDPGTAVPG*DSSHQSSSPLG
Trigger: GCCCAGGGGGCTACTGCTTTGATGGGAGCTGTCCCACCCTGGCACAGCAGTGCCGGGATCTGTGGGGGCCAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 72 bp GTGCCCGCTGGTCCCAAGAGCATAGCTCAGACTCTCTaGGTACTGGCCCCAGTGGGAGGGCAGGGCTCTGCG +
Preference number: 6 (lower is better)
Translates to: VPAGPKSIAQTL*VLAPVGGQGSA
Trigger: CGCAGAGCCCTGCCCTCCCACTGGGGCCAGTACCCAGAGAGTCTGAGCTATGCTCTTGGGACCAGCGGGCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 72 bp TGCTCCAGGCACCGTCCCTCCAGTCCCGGGCTTGACTaGTGGTGTCGGGGGTGCAAAGGTTGGCTTGACCTG +
Preference number: 6 (lower is better)
Translates to: CSRHRPSSPGLD*WCRGCKGWLDL
Trigger: CAGGTCAAGCCAACCTTTGCACCCCCGACACCACCAGTCAAGCCCGGGACTGGAGGGACGGTGCCTGGAGCA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS CCA 72 bp CCCGGGCTTGACTGGTGGTGTCGGGGGTGCAAAGGTTaGCTTGACCTGCTTGGGTTTCAGCTCTGGGAGGGG +
Preference number: 6 (lower is better)
Translates to: PGLDWWCRGCKG*LDLLGFQLWEG
Trigger: CCCCTCCCAGAGCTGAAACCCAAGCAGGTCAAGCCAACCTTTGCACCCCCGACACCACCAGTCAAGCCCGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS CCA 72 bp TCCAGGCACCGTCCCTCCAGTCCCGGGCTTGACTGGTaGTGTCGGGGGTGCAAAGGTTGGCTTGACCTGCTT +
Preference number: 6 (lower is better)
Translates to: SRHRPSSPGLDW*CRGCKGWLDLL
Trigger: AAGCAGGTCAAGCCAACCTTTGCACCCCCGACACCACCAGTCAAGCCCGGGACTGGAGGGACGGTGCCTGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS CAA 90 bp CCAGTCCCGGGCTTGACTGGTGGTGTCGGGGGTGCAAAGGTTGGCTaGACCTGCTTGGGTTTCAGCTCTGGGAGGGGCTTGGTGGGAGGA +
Preference number: 6 (lower is better)
Translates to: PVPGLTGGVGGAKVG*TCLGFSSGRGLVGG
Trigger: TCCTCCCACCAAGCCCCTCCCAGAGCTGAAACCCAAGCAGGTCAAGCCAACCTTTGCACCCCCGACACCACCAGTCAAGCCCGGGACTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS CAA 72 bp GGCTTGACTGGTGGTGTCGGGGGTGCAAAGGTTGGCTaGACCTGCTTGGGTTTCAGCTCTGGGAGGGGCTTG +
Preference number: 6 (lower is better)
Translates to: GLTGGVGGAKVG*TCLGFSSGRGL
Trigger: CAAGCCCCTCCCAGAGCTGAAACCCAAGCAGGTCAAGCCAACCTTTGCACCCCCGACACCACCAGTCAAGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS CCA 72 bp AGCTTGTCCACGTGGTTTACAACCTCCAGCACTCGCTaGCGCACGGCCTCTCTGCTCCCCAACTTCTGGAAC +
Preference number: 6 (lower is better)
Translates to: SLSTWFTTSSTR*RTASLLPNFWN
Trigger: GTTCCAGAAGTTGGGGAGCAGAGAGGCCGTGCGCCAGCGAGTGCTGGAGGTTGTAAACCACGTGGACAAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 72 bp CAGGGTGGGACAGCTCCCATCAAAGCAGTAGCCCCCTaGGCAGGGAGTGCCATTCTGTTGGAAGGCATCTTC +
Preference number: 6 (lower is better)
Translates to: QGGTAPIKAVAP*AGSAILLEGIF
Trigger: GAAGATGCCTTCCAACAGAATGGCACTCCCTGCCCAGGGGGCTACTGCTTTGATGGGAGCTGTCCCACCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 72 bp GAGGAGAAAGTGCAGAAGGAGCGTTCAAGGGGCTTCTaGCCTCCCTCACAGTACAGCGCTCCACACCGGTTG +
Preference number: 6 (lower is better)
Translates to: EEKVQKERSRGF*PPSQYSAPHRL
Trigger: CAACCGGTGTGGAGCGCTGTACTGTGAGGGAGGCCAGAAGCCCCTTGAACGCTCCTTCTGCACTTTCTCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CAA 90 bp GGAGAGCCCCGAGATAGGCTTGGGTGCCACACTCCTCCTCTGGATTaGTCTCGGAGCCTTTCGGTAGATGACGATGCCTGCCACGATGAC +
Preference number: 6 (lower is better)
Translates to: GEPRDRLGCHTPPLD*SRSLSVDDDACHDD
Trigger: GTCATCGTGGCAGGCATCGTCATCTACCGAAAGGCTCCGAGACAAATCCAGAGGAGGAGTGTGGCACCCAAGCCTATCTCGGGGCTCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CAA 90 bp GCTCCCATCAAAGCAGTAGCCCCCTGGGCAGGGAGTGCCATTCTGTaGGAAGGCATCTTCGGGACATGTTGGCTTCCGGCCATCACAGAA +
Preference number: 6 (lower is better)
Translates to: APIKAVAPWAGSAIL*EGIFGTCWLPAITE
Trigger: TTCTGTGATGGCCGGAAGCCAACATGTCCCGAAGATGCCTTCCAACAGAATGGCACTCCCTGCCCAGGGGGCTACTGCTTTGATGGGAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS TCA 72 bp AGCCCAGCAGGTCCCTGTTCTTTCGAAGGTGCAGGGTaGAAACGTGCCCGCTGGTCCCAAGAGCATAGCTCA +
Preference number: 6 (lower is better)
Translates to: SPAGPCSFEGAG*KRARWSQEHSS
Trigger: TGAGCTATGCTCTTGGGACCAGCGGGCACGTTTTCACCCTGCACCTTCGAAAGAACAGGGACCTGCTGGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS TCA 72 bp ACAGGTTTCCACACACAGGGCCACCCACGAACCGGTTaGCATCTGGAACATTGGTCAGGCAGCCTGTCTGGG +
Preference number: 6 (lower is better)
Translates to: TGFHTQGHPRTG*HLEHWSGSLSG
Trigger: CCCAGACAGGCTGCCTGACCAATGTTCCAGATGTCAACCGGTTCGTGGGTGGCCCTGTGTGTGGAAACCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 72 bp ACTCGCTGGCGCACGGCCTCTCTGCTCCCCAACTTCTaGAACTCTTGGCTGTCTGCAACCACATACAACTCC +
Preference number: 6 (lower is better)
Translates to: TRWRTASLLPNF*NSWLSATTYNS
Trigger: GGAGTTGTATGTGGTTGCAGACAGCCAAGAGTTCCAGAAGTTGGGGAGCAGAGAGGCCGTGCGCCAGCGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 72 bp GCCACCACCCTCCCGTGGTTCAGGACAGTAGCATCCTaGAATGTCCTCATCATGGCTCATGCCCAGGTTGTG +
Preference number: 6 (lower is better)
Translates to: ATTLPWFRTVAS*NVLIMAHAQVV
Trigger: CACAACCTGGGCATGAGCCATGATGAGGACATTCCAGGATGCTACTGTCCTGAACCACGGGAGGGTGGTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 72 bp TGGGGGCTGGTTGGTAGAAACTGTCTCAGAAGGGTCTaGAGGCCTGTTCTTAGCTGGCAGGCTGCTGTCCCT +
Preference number: 6 (lower is better)
Translates to: WGLVGRNCLRRV*RPVLSWQAAVP
Trigger: AGGGACAGCAGCCTGCCAGCTAAGAACAGGCCTCCAGACCCTTCTGAGACAGTTTCTACCAACCAGCCCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 72 bp TCACCTCTTCTGGATGGGGACCTTCAGAGCAACCTTTaGCTCACCAGCTCCCTGAGTTGCTCCAGGCACCGT +
Preference number: 6 (lower is better)
Translates to: SPLLDGDLQSNL*LTSSLSCSRHR
Trigger: ACGGTGCCTGGAGCAACTCAGGGAGCTGGTGAGCCAAAGGTTGCTCTGAAGGTCCCCATCCAGAAGAGGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS CCA 72 bp AGGCGCCGAGGCCAAACCACTTCATACTGTTTCACATaGGGCAAAGGAGGTCCAGGGGCTACTGCTGGTGTC +
Preference number: 6 (lower is better)
Translates to: RRRGQTTSYCFT*GKGGPGATAGV
Trigger: GACACCAGCAGTAGCCCCTGGACCTCCTTTGCCCCATGTGAAACAGTATGAAGTGGTTTGGCCTCGGCGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106069.9
CDS CAA 90 bp CACTCGCTGGCGCACGGCCTCTCTGCTCCCCAACTTCTGGAACTCTaGGCTGTCTGCAACCACATACAACTCCACATAGCGGGTTTCTCT +
Preference number: 6 (lower is better)
Translates to: HSLAHGLSAPQLLEL*AVCNHIQLHIAGFS
Trigger: AGAGAAACCCGCTATGTGGAGTTGTATGTGGTTGCAGACAGCCAAGAGTTCCAGAAGTTGGGGAGCAGAGAGGCCGTGCGCCAGCGAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS TCA 72 bp CGACACACCTCTCCAGCTGGCTTCACCTTGCATTCATaGCAACAGGTACCACTGGCACACTCTGCCCCCTTG +
Preference number: 6 (lower is better)
Translates to: RHTSPAGFTLHS*QQVPLAHSAPL
Trigger: CAAGGGGGCAGAGTGTGCCAGTGGTACCTGTTGTCATGAATGCAAGGTGAAGCCAGCTGGAGAGGTGTGTCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS TCA 72 bp TGGTATCTTTGGGGCATAAACAGGAACTGGGAGTGGTaGACTGGACACAGCACCTGGAGGTGCAGGGGGAGG +
Preference number: 6 (lower is better)
Translates to: WYLWGINRNWEW*TGHSTWRCRGR
Trigger: CCTCCCCCTGCACCTCCAGGTGCTGTGTCCAGTTCACCACTCCCAGTTCCTGTTTATGCCCCAAAGATACCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS GCA 72 bp AGCTCCCATCAAAGCAGTAGCCCCCTGGGCAGGGAGTaGCATTCTGTTGGAAGGCATCTTCGGGACATGTTG +
Preference number: 6 (lower is better)
Translates to: SSHQSSSPLGRE*HSVGRHLRDML
Trigger: CAACATGTCCCGAAGATGCCTTCCAACAGAATGGCACTCCCTGCCCAGGGGGCTACTGCTTTGATGGGAGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 72 bp TGCTGCCTGTGCCAAGAGCATGGCAGACTCCATGGTTaGAGGAGAAAGTGCAGAAGGAGCGTTCAAGGGGCT +
Preference number: 6 (lower is better)
Translates to: CCLCQEHGRLHG*RRKCRRSVQGA
Trigger: AGCCCCTTGAACGCTCCTTCTGCACTTTCTCCTCCAACCATGGAGTCTGCCATGCTCTTGGCACAGGCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CAA 72 bp GCGCACGGCCTCTCTGCTCCCCAACTTCTGGAACTCTaGGCTGTCTGCAACCACATACAACTCCACATAGCG +
Preference number: 6 (lower is better)
Translates to: AHGLSAPQLLEL*AVCNHIQLHIA
Trigger: CGCTATGTGGAGTTGTATGTGGTTGCAGACAGCCAAGAGTTCCAGAAGTTGGGGAGCAGAGAGGCCGTGCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CAA 90 bp TGCTCCACAAACAGGTTTCCACACACAGGGCCACCCACGAACCGGTaGACATCTGGAACATTGGTCAGGCAGCCTGTCTGGGGTTTTGTC +
Preference number: 6 (lower is better)
Translates to: CSTNRFPHTGPPTNR*TSGTLVRQPVWGFV
Trigger: GACAAAACCCCAGACAGGCTGCCTGACCAATGTTCCAGATGTCAACCGGTTCGTGGGTGGCCCTGTGTGTGGAAACCTGTTTGTGGAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS TCA 72 bp ACTGACTGGGAGGCTCGTAGACGCTGCTTGTTCATCTaGTACATCTGCCAGCCGCTGTACACAGTTGGGTGG +
Preference number: 6 (lower is better)
Translates to: TDWEARRRCLFI*YICQPLYTVGW
Trigger: CCACCCAACTGTGTACAGCGGCTGGCAGATGTATCAGATGAACAAGCAGCGTCTACGAGCCTCCCAGTCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS GCA 72 bp CTTGCATTCATGACAACAGGTACCACTGGCACACTCTaGCCCCTTGACCAGCTGGCAAGTGGTGGCATTGCA +
Preference number: 6 (lower is better)
Translates to: LAFMTTGTTGTL*PLDQLASGGIA
Trigger: TGCAATGCCACCACTTGCCAGCTGGTCAAGGGGGCAGAGTGTGCCAGTGGTACCTGTTGTCATGAATGCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS GCA 72 bp ATCTGTATACACGGAGGTCCTGGCAGCTTCCATCCATaGAAACCTTTCCCTCCTCGCACTTGGTGCCCTGCA +
Preference number: 6 (lower is better)
Translates to: ICIHGGPGSFHP*KPFPPRTWCPA
Trigger: TGCAGGGCACCAAGTGCGAGGAGGGAAAGGTTTGCATGGATGGAAGCTGCCAGGACCTCCGTGTATACAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 72 bp GATGCTTTCGGTCATGATGCAGCCACCACCCTCCCGTaGTTCAGGACAGTAGCATCCTGGAATGTCCTCATC +
Preference number: 6 (lower is better)
Translates to: DAFGHDAATTLP*FRTVASWNVLI
Trigger: GATGAGGACATTCCAGGATGCTACTGTCCTGAACCACGGGAGGGTGGTGGCTGCATCATGACCGAAAGCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 72 bp GGAGGCCTCTTTGGTTTCACTATGGGTCTTGGGGGCTaGTTGGTAGAAACTGTCTCAGAAGGGTCTGGAGGC +
Preference number: 6 (lower is better)
Translates to: GGLFGFTMGLGG*LVETVSEGSGG
Trigger: GCCTCCAGACCCTTCTGAGACAGTTTCTACCAACCAGCCCCCAAGACCCATAGTGAAACCAAAGAGGCCTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS CCA 72 bp TGCAAAGGTTGGCTTGACCTGCTTGGGTTTCAGCTCTaGGAGGGGCTTGGTGGGAGGATCAGGTCTAAACTG +
Preference number: 6 (lower is better)
Translates to: CKGWLDLLGFQL*EGLGGRIRSKL
Trigger: CAGTTTAGACCTGATCCTCCCACCAAGCCCCTCCCAGAGCTGAAACCCAAGCAGGTCAAGCCAACCTTTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS CAA 72 bp CAGAGCCATTGGCAGCTGAGTAGGTCTCTGTGTAGCTaGAGCCCAGCAGGTCCCTGTTCTTTCGAAGGTGCA +
Preference number: 6 (lower is better)
Translates to: QSHWQLSRSLCS*SPAGPCSFEGA
Trigger: TGCACCTTCGAAAGAACAGGGACCTGCTGGGCTCAAGCTACACAGAGACCTACTCAGCTGCCAATGGCTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CAA 72 bp AATGCCCGAGGCCCTAGGTCATTCAGGTTGGTATCTTaGACCCCACAGGTCCCAGCCTTCTGTTGCAGATGC +
Preference number: 6 (lower is better)
Translates to: NARGPRSFRLVS*TPQVPAFCCRC
Trigger: GCATCTGCAACAGAAGGCTGGGACCTGTGGGGTCAAAGATACCAACCTGAATGACCTAGGGCCTCGGGCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CAA 72 bp ACAGGGCCACCCACGAACCGGTTGACATCTGGAACATaGGTCAGGCAGCCTGTCTGGGGTTTTGTCACGAAT +
Preference number: 6 (lower is better)
Translates to: TGPPTNRLTSGT*VRQPVWGFVTN
Trigger: ATTCGTGACAAAACCCCAGACAGGCTGCCTGACCAATGTTCCAGATGTCAACCGGTTCGTGGGTGGCCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CAA 72 bp GAGTGCCATTCTGTTGGAAGGCATCTTCGGGACATGTaGGCTTCCGGCCATCACAGAACTCCTCCAGGTCAC +
Preference number: 6 (lower is better)
Translates to: ECHSVGRHLRDM*ASGHHRTPPGH
Trigger: GTGACCTGGAGGAGTTCTGTGATGGCCGGAAGCCAACATGTCCCGAAGATGCCTTCCAACAGAATGGCACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CAA 72 bp GGCCTCTTTGGTTTCACTATGGGTCTTGGGGGCTGGTaGGTAGAAACTGTCTCAGAAGGGTCTGGAGGCCTG +
Preference number: 6 (lower is better)
Translates to: GLFGFTMGLGGW*VETVSEGSGGL
Trigger: CAGGCCTCCAGACCCTTCTGAGACAGTTTCTACCAACCAGCCCCCAAGACCCATAGTGAAACCAAAGAGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
CDS CAA 90 bp GGACATGTTGGCTTCCGGCCATCACAGAACTCCTCCAGGTCACATTaGTCCTTACTGAGACGACACACCTCTCCAGCTGGCTTCACCTTG +
Preference number: 6 (lower is better)
Translates to: GHVGFRPSQNSSRSH*SLLRRHTSPAGFTL
Trigger: CAAGGTGAAGCCAGCTGGAGAGGTGTGTCGTCTCAGTAAGGACAAATGTGACCTGGAGGAGTTCTGTGATGGCCGGAAGCCAACATGTCC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS TCA 72 bp CCACAGGTCCCAGCCTTCTGTTGCAGATGCTTTGCCTaGTACATCGCATGTTGCCCCTCTTCATCAGCATCC +
Preference number: 6 (lower is better)
Translates to: PQVPAFCCRCFA*YIACCPSSSAS
Trigger: GGATGCTGATGAAGAGGGGCAACATGCGATGTATCAGGCAAAGCATCTGCAACAGAAGGCTGGGACCTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS GCA 72 bp TCAACCCCCGTGATAAGTTGCACGTTGTCATGTGGGTaGTGCCCTTGCAAGTTCTGTTCCCTCCAGGACAAG +
Preference number: 6 (lower is better)
Translates to: STPVISCTLSCG*CPCKFCSLQDK
Trigger: CTTGTCCTGGAGGGAACAGAACTTGCAAGGGCAGCACCCACATGACAACGTGCAACTTATCACGGGGGTTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS GCA 72 bp TGCCCTGCAATACCAGCTCAAAGGTGTCAATGTTGCTaGCTGTGCCAAGAGCATGGCAGACTCCATGGTTGG +
Preference number: 6 (lower is better)
Translates to: CPAIPAQRCQCC*LCQEHGRLHGW
Trigger: CCAACCATGGAGTCTGCCATGCTCTTGGCACAGGCAGCAACATTGACACCTTTGAGCTGGTATTGCAGGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS GCA 72 bp TGGTGCCCTGCAATACCAGCTCAAAGGTGTCAATGTTaGTGCCTGTGCCAAGAGCATGGCAGACTCCATGGT +
Preference number: 6 (lower is better)
Translates to: WCPAIPAQRCQC*CLCQEHGRLHG
Trigger: ACCATGGAGTCTGCCATGCTCTTGGCACAGGCAGCAACATTGACACCTTTGAGCTGGTATTGCAGGGCACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 72 bp AGTGCCATTCTGTTGGAAGGCATCTTCGGGACATGTTaGCTTCCGGCCATCACAGAACTCCTCCAGGTCACA +
Preference number: 6 (lower is better)
Translates to: SAILLEGIFGTC*LPAITELLQVT
Trigger: TGTGACCTGGAGGAGTTCTGTGATGGCCGGAAGCCAACATGTCCCGAAGATGCCTTCCAACAGAATGGCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CAA 72 bp TTGGTGCCCTGCAATACCAGCTCAAAGGTGTCAATGTaGCTGCCTGTGCCAAGAGCATGGCAGACTCCATGG +
Preference number: 6 (lower is better)
Translates to: LVPCNTSSKVSM*LPVPRAWQTPW
Trigger: CCATGGAGTCTGCCATGCTCTTGGCACAGGCAGCAACATTGACACCTTTGAGCTGGTATTGCAGGGCACCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS GCA 72 bp GCAATACCAGCTCAAAGGTGTCAATGTTGCTGCCTGTaGCAAGAGCATGGCAGACTCCATGGTTGGAGGAGA +
Preference number: 6 (lower is better)
Translates to: AIPAQRCQCCCL*QEHGRLHGWRR
Trigger: TCTCCTCCAACCATGGAGTCTGCCATGCTCTTGGCACAGGCAGCAACATTGACACCTTTGAGCTGGTATTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 72 bp GAAATCAACCCCCGTGATAAGTTGCACGTTGTCATGTaGGTGCTGCCCTTGCAAGTTCTGTTCCCTCCAGGA +
Preference number: 6 (lower is better)
Translates to: EINPRDKLHVVM*VLPLQVLFPPG
Trigger: TCCTGGAGGGAACAGAACTTGCAAGGGCAGCACCCACATGACAACGTGCAACTTATCACGGGGGTTGATTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 72 bp GCAGAGCAGTTTTCAGATCTGTATACACGGAGGTCCTaGCAGCTTCCATCCATGCAAACCTTTCCCTCCTCG +
Preference number: 6 (lower is better)
Translates to: AEQFSDLYTRRS*QLPSMQTFPSS
Trigger: CGAGGAGGGAAAGGTTTGCATGGATGGAAGCTGCCAGGACCTCCGTGTATACAGATCTGAAAACTGCTCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CAA 72 bp CAGCTTCCATCCATGCAAACCTTTCCCTCCTCGCACTaGGTGCCCTGCAATACCAGCTCAAAGGTGTCAATG +
Preference number: 6 (lower is better)
Translates to: QLPSMQTFPSSH*VPCNTSSKVSM
Trigger: CATTGACACCTTTGAGCTGGTATTGCAGGGCACCAAGTGCGAGGAGGGAAAGGTTTGCATGGATGGAAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CAA 90 bp AGCCAGTCCAACAGTGCTCCCAATGAAATCAACCCCCGTGATAAGTaGCACGTTGTCATGTGGGTGCTGCCCTTGCAAGTTCTGTTCCCT +
Preference number: 6 (lower is better)
Translates to: SQSNSAPNEINPRDK*HVVMWVLPLQVLFP
Trigger: AGGGAACAGAACTTGCAAGGGCAGCACCCACATGACAACGTGCAACTTATCACGGGGGTTGATTTCATTGGGAGCACTGTTGGACTGGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CAA 90 bp GTCATTCAGGTTGGTATCTTTGACCCCACAGGTCCCAGCCTTCTGTaGCAGATGCTTTGCCTGATACATCGCATGTTGCCCCTCTTCATC +
Preference number: 6 (lower is better)
Translates to: VIQVGIFDPTGPSLL*QMLCLIHRMLPLFI
Trigger: GATGAAGAGGGGCAACATGCGATGTATCAGGCAAAGCATCTGCAACAGAAGGCTGGGACCTGTGGGGTCAAAGATACCAACCTGAATGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS GCA 72 bp CTCTCTGCTCCCCAACTTCTGGAACTCTTGGCTGTCTaGAACCACATACAACTCCACATAGCGGGTTTCTCT +
Preference number: 6 (lower is better)
Translates to: LSAPQLLELLAV*NHIQLHIAGFS
Trigger: AGAGAAACCCGCTATGTGGAGTTGTATGTGGTTGCAGACAGCCAAGAGTTCCAGAAGTTGGGGAGCAGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS GCA 72 bp GTGATAAGTTGCACGTTGTCATGTGGGTGCTGCCCTTaGAAGTTCTGTTCCCTCCAGGACAAGAAGTTCTCC +
Preference number: 6 (lower is better)
Translates to: VISCTLSCGCCP*KFCSLQDKKFS
Trigger: GGAGAACTTCTTGTCCTGGAGGGAACAGAACTTGCAAGGGCAGCACCCACATGACAACGTGCAACTTATCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 72 bp TCAAAGGTGTCAATGTTGCTGCCTGTGCCAAGAGCATaGCAGACTCCATGGTTGGAGGAGAAAGTGCAGAAG +
Preference number: 6 (lower is better)
Translates to: SKVSMLLPVPRA*QTPWLEEKVQK
Trigger: CTTCTGCACTTTCTCCTCCAACCATGGAGTCTGCCATGCTCTTGGCACAGGCAGCAACATTGACACCTTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 72 bp AGCTTCCATCCATGCAAACCTTTCCCTCCTCGCACTTaGTGCCCTGCAATACCAGCTCAAAGGTGTCAATGT +
Preference number: 6 (lower is better)
Translates to: SFHPCKPFPPRT*CPAIPAQRCQC
Trigger: ACATTGACACCTTTGAGCTGGTATTGCAGGGCACCAAGTGCGAGGAGGGAAAGGTTTGCATGGATGGAAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS TCA 72 bp ACAAGAAGTTCTCCAGTGTCACGTTGGCATAGCGGCTaGTGTAGAATTTGTCCTTGTTCCAGATCTCCAGGC +
Preference number: 6 (lower is better)
Translates to: TRSSPVSRWHSG*CRICPCSRSPG
Trigger: GCCTGGAGATCTGGAACAAGGACAAATTCTACATCAGCCGCTATGCCAACGTGACACTGGAGAACTTCTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8
CDS CCA 72 bp ACATTTGTCCTTACTGAGACGACACACCTCTCCAGCTaGCTTCACCTTGCATTCATGACAACAGGTACCACT +
Preference number: 6 (lower is better)
Translates to: TFVLTETTHLSS*LHLAFMTTGTT
Trigger: AGTGGTACCTGTTGTCATGAATGCAAGGTGAAGCCAGCTGGAGAGGTGTGTCGTCTCAGTAAGGACAAATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026546.16
ENSMUST00000106069.9
ENSMUST00000148670.8