RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ADAM18 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031552

Ensembl transcript IDs: ENSMUST00000033957.12, ENSMUST00000138232.2, ENSMUST00000173833.3

Found 110 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCGATTTCTGGTGCAATGAATGGCCCTCATATTTTGTGTTCTCCCTaGGGCACGATTTTCCTTTCGTTTCTCTTCATGATCCCAACAAGG +
Preference number: 1 (lower is better)
Translates to: PISGAMNGPHILCSP*GTIFLSFLFMIPTR
Trigger: CCTTGTTGGGATCATGAAGAGAAACGAAAGGAAAATCGTGCCTCAGGGAGAACACAAAATATGAGGGCCATTCATTGCACCAGAAATCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
3UTR CAA 90 bp AGTGTATCCACCGGTAACAGAGCGGTTAGAACACACACTTCCTCCTaGGGTCCATCAACTGCTAGCTTCCTTGGCCGATTTCTGGTGCAA +
Preference number: 2 (lower is better)
Translates to: SVSTGNRAVRTHTSS*GPSTASFLGRFLVQ
Trigger: TTGCACCAGAAATCGGCCAAGGAAGCTAGCAGTTGATGGACCCAAGGAGGAAGTGTGTGTTCTAACCGCTCTGTTACCGGTGGATACACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
3UTR TCA 72 bp GGTGCAATGAATGGCCCTCATATTTTGTGTTCTCCCTaGGGCACGATTTTCCTTTCGTTTCTCTTCATGATC +
Preference number: 3 (lower is better)
Translates to: GAMNGPHILCSP*GTIFLSFLFMI
Trigger: GATCATGAAGAGAAACGAAAGGAAAATCGTGCCTCAGGGAGAACACAAAATATGAGGGCCATTCATTGCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
3UTR-3UTR CAA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTAACACACACTTCCTCCTaGGGTCCATCAACTGCTAGC +
Preference number: 3 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLTHTSS*GPSTAS
Trigger: GCTAGCAGTTGATGGACCCAAGGAGGAAGTGTGTGT...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR GCA 90 bp CCAACAAGGAAAGTTACGATGAAAGGCAGAAAGATGAAGAAGCCCAGGATCACCCTCCCTGCTGCATTATaGATGGAGCGCTGGGACAGG +
Preference number: 4 (lower is better)
Translates to: PTRKVTMKGRKMKKPRITLPAAL*MERWDR
Trigger: CCTGTCCCAGCGCTCCATGCATAATGCAGCAGGGAG...GGTGATCCTGGGCTTCTTCATCTTTCTGCCTTTCATCGTAACTTTCCTTGTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
3UTR CAA 72 bp ACCGGTAACAGAGCGGTTAGAACACACACTTCCTCCTaGGGTCCATCAACTGCTAGCTTCCTTGGCCGATTT +
Preference number: 4 (lower is better)
Translates to: TGNRAVRTHTSS*GPSTASFLGRF
Trigger: AAATCGGCCAAGGAAGCTAGCAGTTGATGGACCCAAGGAGGAAGTGTGTGTTCTAACCGCTCTGTTACCGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR GCA 90 bp TACGATGAAAGGCAGAAAGATGAAGAAGCCCAGGATCACCCAGCTGTCCTCATTCGTGGCTCTATCTTCTaGGGCACTGTGATATGCAGG +
Preference number: 4 (lower is better)
Translates to: YDERQKDEEAQDHPAVLIRGSIF*GTVICR
Trigger: CCTGCATATCACAGTGCCGCAGAAGATAGAGCCACG...AATGAGGACAGCTGGGTGATCCTGGGCTTCTTCATCTTTCTGCCTTTCATCGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR TCA 90 bp AAGCCCAGGATCACCCAGCTGTCCTCATTCTTACTCAGGCGCTTTGTAGCAAAATCTTCTGCGGCACTGTaGTATGCAGGCATATTCCTT +
Preference number: 4 (lower is better)
Translates to: KPRITQLSSFLLRRFVAKSSAAL*YAGIFL
Trigger: AAGGAATATGCCTGCATATCACAGTGCCGCAGAAGA...TTTTGCTACAAAGCGCCTGAGTAAGAATGAGGACAGCTGGGTGATCCTGGGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR GCA 90 bp AAGCCCAGGATCACCCAGCTGTCCTCATTCTTACTCAGGCGCTTTGTAGCAAAATGCGGCACTGTGATATaGAGGCATATTCCTTCCGAA +
Preference number: 4 (lower is better)
Translates to: KPRITQLSSFLLRRFVAKCGTVI*RHIPSE
Trigger: TTCGGAAGGAATATGCCTGCATATCACAGTGCCGCA...TTTTGCTACAAAGCGCCTGAGTAAGAATGAGGACAGCTGGGTGATCCTGGGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR CCA 90 bp TTGGCCGATTTCTGGTGCAATGAATGGCCCTCATATTTTGTGTTCTCCCTGAGGACAACCCAGGAAGTATaGACAGACACACGCTGTCGT +
Preference number: 4 (lower is better)
Translates to: LADFWCNEWPSYFVFSLRTTQEV*TDTRCR
Trigger: ACGACAGCGTGTGTCTGTCCATACTTCCTGGGTTGT...CCTCAGGGAGAACACAAAATATGAGGGCCATTCATTGCACCAGAAATCGGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR TCA 90 bp GAATGGCCCTCATATTTTGTGTTCTCCCTGAGGCACGATTTTCCTTTCGTTTCTGCTGTCTCTGCCATCTaGTCTCATAGACAACCCAGG +
Preference number: 4 (lower is better)
Translates to: EWPSYFVFSLRHDFPFVSAVSAI*SHRQPR
Trigger: CCTGGGTTGTCTATGAGATCAGATGGCAGAGACAGC...AGAAACGAAAGGAAAATCGTGCCTCAGGGAGAACACAAAATATGAGGGCCATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR GCA 90 bp TTCTCCCTGAGGCACGATTTTCCTTTCGTTTCTCTTCATGATCCCAACAAGGAACTGAGCCTTTTAGCCTaGACGTTTCATGGTCGCAGC +
Preference number: 4 (lower is better)
Translates to: FSLRHDFPFVSLHDPNKELSLLA*TFHGRS
Trigger: GCTGCGACCATGAAACGTGCAGGCTAAAAGGCTCAG...TTCCTTGTTGGGATCATGAAGAGAAACGAAAGGAAAATCGTGCCTCAGGGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR TCA 90 bp AAGATGAAGAAGCCCAGGATCACCCAGCTGTCCTCATTCTTACTCAGGCGCTTTGTTCAATTCCATAGCTaGCATTTTCCAACTGCAGGA +
Preference number: 4 (lower is better)
Translates to: KMKKPRITQLSSFLLRRFVQFHS*HFPTAG
Trigger: TCCTGCAGTTGGAAAATGTCAGCTATGGAATTGAAC...AAAGCGCCTGAGTAAGAATGAGGACAGCTGGGTGATCCTGGGCTTCTTCATCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR GCA 90 bp CCAACAAGGAAAGTTACGATGAAAGGCAGAAAGATGAAGAAGCCCAGGATCACCCAAATGGCCGTTCAGTaGAAAGGTGTCAGGAACACA +
Preference number: 4 (lower is better)
Translates to: PTRKVTMKGRKMKKPRITQMAVQ*KGVRNT
Trigger: TGTGTTCCTGACACCTTTGCACTGAACGGCCATTTG...GGTGATCCTGGGCTTCTTCATCTTTCTGCCTTTCATCGTAACTTTCCTTGTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR GCA 90 bp GAATGGCCCTCATATTTTGTGTTCTCCCTGAGGCACGATTTTCCTTTCGTTTCTATGCAGATCCCAACCTaGACAAATGGCCGTTCAGTG +
Preference number: 4 (lower is better)
Translates to: EWPSYFVFSLRHDFPFVSMQIPT*TNGRSV
Trigger: CACTGAACGGCCATTTGTGCAGGTTGGGATCTGCAT...AGAAACGAAAGGAAAATCGTGCCTCAGGGAGAACACAAAATATGAGGGCCATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR CCA 90 bp ACGATGAAAGGCAGAAAGATGAAGAAGCCCAGGATCACCCAGCTGTCCTCATTCTCCTGCTCATTGAAATaGCCTTTATCAAGCTGGTCT +
Preference number: 4 (lower is better)
Translates to: TMKGRKMKKPRITQLSSFSCSLK*PLSSWS
Trigger: AGACCAGCTTGATAAAGGCCATTTCAATGAGCAGGA...GAATGAGGACAGCTGGGTGATCCTGGGCTTCTTCATCTTTCTGCCTTTCATCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR CCA 90 bp GATCCCAACAAGGAAAGTTACGATGAAAGGCAGAAAGATGAAGAAGCCCAGGATAAGTCTTCTTCCCACTaGAACTCAGTGCTCCCTGCT +
Preference number: 4 (lower is better)
Translates to: DPNKESYDERQKDEEAQDKSSSH*NSVLPA
Trigger: AGCAGGGAGCACTGAGTTCCAGTGGGAAGAAGACTT...ATCCTGGGCTTCTTCATCTTTCTGCCTTTCATCGTAACTTTCCTTGTTGGGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR CCA 90 bp ATCCCAACAAGGAAAGTTACGATGAAAGGCAGAAAGATGAAGAAGCCCAGGATCGTGTCAGGAACACAGTaGCTAGAGGATCCATCGCAA +
Preference number: 4 (lower is better)
Translates to: IPTRKVTMKGRKMKKPRIVSGTQ*LEDPSQ
Trigger: TTGCGATGGATCCTCTAGCCACTGTGTTCCTGACAC...GATCCTGGGCTTCTTCATCTTTCTGCCTTTCATCGTAACTTTCCTTGTTGGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR TCA 90 bp GCCCTCATATTTTGTGTTCTCCCTGAGGCACGATTTTCCTTTCGTTTCTCTTCAAAAATGAGTGGTTCCTaGGATGCAGAGAGTAGGGCT +
Preference number: 4 (lower is better)
Translates to: ALIFCVLPEARFSFRFSSKMSGS*DAESRA
Trigger: AGCCCTACTCTCTGCATCTCAGGAACCACTCATTTT...TGAAGAGAAACGAAAGGAAAATCGTGCCTCAGGGAGAACACAAAATATGAGGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR GCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTACTCCCTGCTGCATTATaGATGGAGCGCTGGGACAGG +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLLPAAL*MERWDR
Trigger: CCTGTCCCAGCGCTCCATGCATAATGCAGCAGGGAG...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR TCA 90 bp ACAAGGAAAGTTACGATGAAAGGCAGAAAGATGAAGAAGCCCAGGATCACCCAGTTGAGTGATAACCACTaGGAATCCCTCCAAACCTAT +
Preference number: 4 (lower is better)
Translates to: TRKVTMKGRKMKKPRITQLSDNH*ESLQTY
Trigger: ATAGGTTTGGAGGGATTCTCAGTGGTTATCACTCAA...CTGGGTGATCCTGGGCTTCTTCATCTTTCTGCCTTTCATCGTAACTTTCCTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR TCA 90 bp TTTGTGTTCTCCCTGAGGCACGATTTTCCTTTCGTTTCTCTTCATGATCCCAACCAATACATGCACATTTaGCAGGTCACCAAGACACTG +
Preference number: 4 (lower is better)
Translates to: FVFSLRHDFPFVSLHDPNQYMHI*QVTKTL
Trigger: CAGTGTCTTGGTGACCTGTCAAATGTGCATGTATTG...GTTGGGATCATGAAGAGAAACGAAAGGAAAATCGTGCCTCAGGGAGAACACAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR CCA 90 bp GATCCCAACAAGGAAAGTTACGATGAAAGGCAGAAAGATGAAGAAGCCCAGGATTCTATCTGCCAAACATaGCTGTCATTTCCTGCTAGC +
Preference number: 4 (lower is better)
Translates to: DPNKESYDERQKDEEAQDSICQT*LSFPAS
Trigger: GCTAGCAGGAAATGACAGCCATGTTTGGCAGATAGA...ATCCTGGGCTTCTTCATCTTTCTGCCTTTCATCGTAACTTTCCTTGTTGGGATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR TCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTAGCTGTCTCTGCCATCTaGTCTCATAGACAACCCAGG +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLAVSAI*SHRQPR
Trigger: CCTGGGTTGTCTATGAGATCAGATGGCAGAGACAGC...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000138232.2
CDS-3UTR GCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTACGTGGCTCTATCTTCTaGGGCACTGTGATATGCAGG +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLRGSIF*GTVICR
Trigger: CCTGCATATCACAGTGCCGCAGAAGATAGAGCCACG...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR GCA 90 bp ACAAGGAAAGTTACGATGAAAGGCAGAAAGATGAAGAAGCCCAGGATCACCCAGTTTGGTTGCAATACATaGACATTTGACAGGTCACCA +
Preference number: 4 (lower is better)
Translates to: TRKVTMKGRKMKKPRITQFGCNT*TFDRSP
Trigger: TGGTGACCTGTCAAATGTGCATGTATTGCAACCAAA...CTGGGTGATCCTGGGCTTCTTCATCTTTCTGCCTTTCATCGTAACTTTCCTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR GCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTACTGAGCCTTTTAGCCTaGACGTTTCATGGTCGCAGC +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLLSLLA*TFHGRS
Trigger: GCTGCGACCATGAAACGTGCAGGCTAAAAGGCTCAG...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR TCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTAGGCCAGAGCAGATGCTaGGTGTCACAATGGAATTTG +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLGQSRC*VSQWNL
Trigger: CAAATTCCATTGTGACACTCAGCATCTGCTCTGGCC...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR TCA 90 bp CCAACAAGGAAAGTTACGATGAAAGGCAGAAAGATGAAGAAGCCCAGGATCACCTTTTATCCTGCTCATTaGAATGGCCTTTATCAAGCT +
Preference number: 4 (lower is better)
Translates to: PTRKVTMKGRKMKKPRITFYPAH*NGLYQA
Trigger: AGCTTGATAAAGGCCATTTCAATGAGCAGGATAAAA...GGTGATCCTGGGCTTCTTCATCTTTCTGCCTTTCATCGTAACTTTCCTTGTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR TCA 90 bp GCCCTCATATTTTGTGTTCTCCCTGAGGCACGATTTTCCTTTCGTTTCTCTTCAGGCGTCTCCTGTAAATaGGTAAGTGTGTTATTTCAT +
Preference number: 4 (lower is better)
Translates to: ALIFCVLPEARFSFRFSSGVSCK*VSVLFH
Trigger: ATGAAATAACACACTTACTCATTTACAGGAGACGCC...TGAAGAGAAACGAAAGGAAAATCGTGCCTCAGGGAGAACACAAAATATGAGGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR TCA 90 bp ATCCCAACAAGGAAAGTTACGATGAAAGGCAGAAAGATGAAGAAGCCCAGGATCCAGCACTCTTTAAATTaGCATTCCGTCTCATTACCA +
Preference number: 4 (lower is better)
Translates to: IPTRKVTMKGRKMKKPRIQHSLN*HSVSLP
Trigger: TGGTAATGAGACGGAATGTCAATTTAAAGAGTGCTG...GATCCTGGGCTTCTTCATCTTTCTGCCTTTCATCGTAACTTTCCTTGTTGGGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR GCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTAATGCAGATCCCAACCTaGACAAATGGCCGTTCAGTG +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLMQIPT*TNGRSV
Trigger: CACTGAACGGCCATTTGTGCAGGTTGGGATCTGCAT...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR CCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTAAAGTCTTCTTCCCACTaGAACTCAGTGCTCCCTGCT +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLKSSSH*NSVLPA
Trigger: AGCAGGGAGCACTGAGTTCCAGTGGGAAGAAGACTT...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR CCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTAGTGTCAGGAACACAGTaGCTAGAGGATCCATCGCAA +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLVSGTQ*LEDPSQ
Trigger: TTGCGATGGATCCTCTAGCCACTGTGTTCCTGACAC...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR CCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTAACAACCCAGGAAGTATaGACAGACACACGCTGTCGT +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLTTQEV*TDTRCR
Trigger: ACGACAGCGTGTGTCTGTCCATACTTCCTGGGTTGT...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000138232.2
CDS-3UTR TCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTATCTTCTGCGGCACTGTaGTATGCAGGCATATTCCTT +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLSSAAL*YAGIFL
Trigger: AAGGAATATGCCTGCATATCACAGTGCCGCAGAAGA...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR TCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTAAAAATGAGTGGTTCCTaGGATGCAGAGAGTAGGGCT +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLKMSGS*DAESRA
Trigger: AGCCCTACTCTCTGCATCTCAGGAACCACTCATTTT...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR TCA 90 bp CCCTCATATTTTGTGTTCTCCCTGAGGCACGATTTTCCTTTCGTTTCTCTTCATCTGCGTGTCAAAATTTaGAACATAGTGCATGTAGTC +
Preference number: 4 (lower is better)
Translates to: PSYFVFSLRHDFPFVSLHLRVKI*NIVHVV
Trigger: GACTACATGCACTATGTTTCAAATTTTGACACGCAG...ATGAAGAGAAACGAAAGGAAAATCGTGCCTCAGGGAGAACACAAAATATGAGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR TCA 90 bp TCATATTTTGTGTTCTCCCTGAGGCACGATTTTCCTTTCGTTTCTCTTCATGATCATCGCAATATTCTGTaGAGTCACACTCTGGGTCAA +
Preference number: 4 (lower is better)
Translates to: SYFVFSLRHDFPFVSLHDHRNIL*SHTLGQ
Trigger: TTGACCCAGAGTGTGACTTCACAGAATATTGCGATG...ATCATGAAGAGAAACGAAAGGAAAATCGTGCCTCAGGGAGAACACAAAATATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR TCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTACGATTTCTGGTGCAATaGATGGCATTTGTGGTCCAC +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLRFLVQ*MAFVVH
Trigger: GTGGACCACAAATGCCATTCATTGCACCAGAAATCG...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138232.2
CDS-3UTR GCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTATGCGGCACTGTGATATaGAGGCATATTCCTTCCGAA +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLCGTVI*RHIPSE
Trigger: TTCGGAAGGAATATGCCTGCATATCACAGTGCCGCA...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR GCA 90 bp ATCCCAACAAGGAAAGTTACGATGAAAGGCAGAAAGATGAAGAAGCCCAGGATCCAACATAGCTTTTACTaGATATTTCACCTGGTGATG +
Preference number: 4 (lower is better)
Translates to: IPTRKVTMKGRKMKKPRIQHSFY*IFHLVM
Trigger: CATCACCAGGTGAAATATGCAGTAAAAGCTATGTTG...GATCCTGGGCTTCTTCATCTTTCTGCCTTTCATCGTAACTTTCCTTGTTGGGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR GCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTACAAATGGCCGTTCAGTaGAAAGGTGTCAGGAACACA +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLQMAVQ*KGVRNT
Trigger: TGTGTTCCTGACACCTTTGCACTGAACGGCCATTTG...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR CCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTAAATGAATGGCATTTGTaGTCCACACACAGTGCCGTC +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLNEWHL*STHSAV
Trigger: GACGGCACTGTGTGTGGACCACAAATGCCATTCATT...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138232.2
CDS-3UTR TCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTACAATACATGCACATTTaGCAGGTCACCAAGACACTG +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLQYMHI*QVTKTL
Trigger: CAGTGTCTTGGTGACCTGTCAAATGTGCATGTATTG...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR TCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTACATCGCAATATTCTGTaGAGTCACACTCTGGGTCAA +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLHRNIL*SHTLGQ
Trigger: TTGACCCAGAGTGTGACTTCACAGAATATTGCGATG...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR GCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTATTGGCCGATTTCTGGTaGAATGAATGGCATTTGTGG +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLLADFW*NEWHLW
Trigger: CCACAAATGCCATTCATTGCACCAGAAATCGGCCAA...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138232.2
CDS-3UTR CCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTATCTATCTGCCAAACATaGCTGTCATTTCCTGCTAGC +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLSICQT*LSFPAS
Trigger: GCTAGCAGGAAATGACAGCCATGTTTGGCAGATAGA...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR CCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTACAAACCTATGTCTTCTaGATACATACCAACACCCGC +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLQTYVF*IHTNTR
Trigger: GCGGGTGTTGGTATGTATCCAGAAGACATAGGTTTG...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR CCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTATCCTTGGCCGATTTCTaGTGCAATGAATGGCATTTG +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLSLADF*CNEWHL
Trigger: CAAATGCCATTCATTGCACCAGAAATCGGCCAAGGA...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138232.2
CDS-3UTR TCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTAGTTCAATTCCATAGCTaGCATTTTCCAACTGCAGGA +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLVQFHS*HFPTAG
Trigger: TCCTGCAGTTGGAAAATGTCAGCTATGGAATTGAAC...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR TCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTATTGAGTGATAACCACTaGGAATCCCTCCAAACCTAT +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLLSDNH*ESLQTY
Trigger: ATAGGTTTGGAGGGATTCTCAGTGGTTATCACTCAA...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR GCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTATCAAGCTGGTCTATCTaGCAAACATGGCTGTCATTT +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLSSWSI*QTWLSF
Trigger: AAATGACAGCCATGTTTGGCAGATAGACCAGCTTGA...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR CCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTATCCTGCTCATTGAAATaGCCTTTATCAAGCTGGTCT +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLSCSLK*PLSSWS
Trigger: AGACCAGCTTGATAAAGGCCATTTCAATGAGCAGGA...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR TCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTAGGCGTCTCCTGTAAATaGGTAAGTGTGTTATTTCAT +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLGVSCK*VSVLFH
Trigger: ATGAAATAACACACTTACTCATTTACAGGAGACGCC...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR TCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTACTGCGTGTCAAAATTTaGAACATAGTGCATGTAGTC +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLLRVKI*NIVHVV
Trigger: GACTACATGCACTATGTTTCAAATTTTGACACGCAG...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR TCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTACAGCACTCTTTAAATTaGCATTCCGTCTCATTACCA +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLQHSLN*HSVSLP
Trigger: TGGTAATGAGACGGAATGTCAATTTAAAGAGTGCTG...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR GCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTATTTGGTTGCAATACATaGACATTTGACAGGTCACCA +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLFGCNT*TFDRSP
Trigger: TGGTGACCTGTCAAATGTGCATGTATTGCAACCAAA...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR TCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTATTTTATCCTGCTCATTaGAATGGCCTTTATCAAGCT +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLFYPAH*NGLYQA
Trigger: AGCTTGATAAAGGCCATTTCAATGAGCAGGATAAAA...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR TCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTATTTCGTTTCTCTTCATaGTCCCAACAAGGAAAGTTA +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLFRFSS*SQQGKL
Trigger: TAACTTTCCTTGTTGGGATCATGAAGAGAAACGAAA...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR GCA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTACAACATAGCTTTTACTaGATATTTCACCTGGTGATG +
Preference number: 4 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLQHSFY*IFHLVM
Trigger: CATCACCAGGTGAAATATGCAGTAAAAGCTATGTTG...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS GCA 90 bp GCATCTCCGCCCTTGCGTGGCTCTATCTTCTGCGGCACTGTGATATaGAGGCATATTCCTTCCGAATCGAGGCGGGCAAACAGCATGGCA +
Preference number: 5 (lower is better)
Translates to: ASPPLRGSIFCGTVI*RHIPSESRRANSMA
Trigger: TGCCATGCTGTTTGCCCGCCTCGATTCGGAAGGAATATGCCTGCATATCACAGTGCCGCAGAAGATAGAGCCACGCAAGGGCGGAGATGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS GCA 90 bp GTCACCTTCCCTTCTGCATCTCCGCCCTTGCGTGGCTCTATCTTCTaGGGCACTGTGATATGCAGGCATATTCCTTCCGAATCGAGGCGG +
Preference number: 5 (lower is better)
Translates to: VTFPSASPPLRGSIF*GTVICRHIPSESRR
Trigger: CCGCCTCGATTCGGAAGGAATATGCCTGCATATCACAGTGCCGCAGAAGATAGAGCCACGCAAGGGCGGAGATGCAGAAGGGAAGGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS GCA 90 bp CTTTCCTACAGGGCGTGCCTGATGCTGACAGCTCACACGTGGGCATaGAGCAAGCTCCAGATCCACATTGTGCTGAGCCTTTTAGCCTGC +
Preference number: 5 (lower is better)
Translates to: LSYRACLMLTAHTWA*SKLQIHIVLSLLAC
Trigger: GCAGGCTAAAAGGCTCAGCACAATGTGGATCTGGAGCTTGCTGCATGCCCACGTGTGAGCTGTCAGCATCAGGCACGCCCTGTAGGAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS GCA 90 bp ATGCAAGCTACAGTTGCTAAAAGTCTTCTTCCCACTGGAACTCAGTaGTCCCTGCTGCATTATGCATGGAGCGCTGGGACAGGAACAATT +
Preference number: 5 (lower is better)
Translates to: MQATVAKSLLPTGTQ*SLLHYAWSAGTGTI
Trigger: AATTGTTCCTGTCCCAGCGCTCCATGCATAATGCAGCAGGGAGCACTGAGTTCCAGTGGGAAGAAGACTTTTAGCAACTGTAGCTTGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS GCA 90 bp ATTGTAGCAATATGCAGATCCCAACCTGCACAAATGGCCGTTCAGTaGAAAGGTGTCAGGAACACAGTGGCTAGAGGATCCATCGCAATA +
Preference number: 5 (lower is better)
Translates to: IVAICRSQPAQMAVQ*KGVRNTVARGSIAI
Trigger: TATTGCGATGGATCCTCTAGCCACTGTGTTCCTGACACCTTTGCACTGAACGGCCATTTGTGCAGGTTGGGATCTGCATATTGCTACAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS GCA 90 bp TTCTTGGGCGGCCGAAAACAAGCTAATTTCCCACAGAGAACATCCTaGTGTCCGCAAGGTACCGAGTACGAGTCTTTAGAATCACAGTTT +
Preference number: 5 (lower is better)
Translates to: FLGGRKQANFPQRTS*CPQGTEYESLESQF
Trigger: AAACTGTGATTCTAAAGACTCGTACTCGGTACCTTGCGGACAGCAGGATGTTCTCTGTGGGAAATTAGCTTGTTTTCGGCCGCCCAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS-3UTR CAA 90 bp AGTTACGATGAAAGGCAGAAAGATGAAGAAGCCCAGGATCACCCAGCTGTCCTCCACTTCTTAGTGGCGTaGCAGTCATTTCCTGTGAAA +
Preference number: 5 (lower is better)
Translates to: SYDERQKDEEAQDHPAVLHFLVA*QSFPVK
Trigger: TTTCACAGGAAATGACTGCAACGCCACTAAGAAGTG...GAGGACAGCTGGGTGATCCTGGGCTTCTTCATCTTTCTGCCTTTCATCGTAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS TCA 90 bp TCACATTCCTCACCAGCTTCCATGATTCCATTGCCACACACGGCTTaGTTTGGTTGCAATACATGCACATTTGACAGGTCACCAAGACAC +
Preference number: 5 (lower is better)
Translates to: SHSSPASMIPLPHTA*FGCNTCTFDRSPRH
Trigger: GTGTCTTGGTGACCTGTCAAATGTGCATGTATTGCAACCAAATCAAGCCGTGTGTGGCAATGGAATCATGGAAGCTGGTGAGGAATGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS GCA 90 bp CTACAGTTGCTAAAAGTCTTCTTCCCACTGGAACTCAGTGCTCCCTaGTGCATTATGCATGGAGCGCTGGGACAGGAACAATTTCTAATA +
Preference number: 5 (lower is better)
Translates to: LQLLKVFFPLELSAP*CIMHGALGQEQFLI
Trigger: TATTAGAAATTGTTCCTGTCCCAGCGCTCCATGCATAATGCAGCAGGGAGCACTGAGTTCCAGTGGGAAGAAGACTTTTAGCAACTGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS CCA 90 bp GAATCCCCTGAGGCCAGAGCAGATGCTGAGTGTCACAATGGAATTTaGCACTTCATCAACATATCCTCGGTAATGGCAATGAGCCAAAAA +
Preference number: 5 (lower is better)
Translates to: ESPEARADAECHNGI*HFINISSVMAMSQK
Trigger: TTTTTGGCTCATTGCCATTACCGAGGATATGTTGATGAAGTGCCAAATTCCATTGTGACACTCAGCATCTGCTCTGGCCTCAGGGGATTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS-3UTR CAA 90 bp CCCAACAAGGAAAGTTACGATGAAAGGCAGAAAGATGAAGAAGCCCAGGATCACCTATGTGCTCAAACCTaGCTGAAGACTCCAGTGGTT +
Preference number: 5 (lower is better)
Translates to: PNKESYDERQKDEEAQDHLCAQT*LKTPVV
Trigger: AACCACTGGAGTCTTCAGCAAGGTTTGAGCACATAG...GTGATCCTGGGCTTCTTCATCTTTCTGCCTTTCATCGTAACTTTCCTTGTTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR CAA 90 bp AGTTACGATGAAAGGCAGAAAGATGAAGAAGCCCAGGATCACCCAGCTGTCCTCGCAGCACTCTTTAAATaGACATTCCGTCTCATTACC +
Preference number: 5 (lower is better)
Translates to: SYDERQKDEEAQDHPAVLAALFK*TFRLIT
Trigger: GGTAATGAGACGGAATGTCAATTTAAAGAGTGCTGC...GAGGACAGCTGGGTGATCCTGGGCTTCTTCATCTTTCTGCCTTTCATCGTAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR CAA 90 bp TCATATTTTGTGTTCTCCCTGAGGCACGATTTTCCTTTCGTTTCTCTTCATGATGAGGCCCCATTCCCTTaGCACTTCTTAGTGGCGTTG +
Preference number: 5 (lower is better)
Translates to: SYFVFSLRHDFPFVSLHDEAPFP*HFLVAL
Trigger: CAACGCCACTAAGAAGTGCAAAGGGAATGGGGCCTC...ATCATGAAGAGAAACGAAAGGAAAATCGTGCCTCAGGGAGAACACAAAATATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR CAA 90 bp CCCAACAAGGAAAGTTACGATGAAAGGCAGAAAGATGAAGAAGCCCAGGATCACGTGTCACAATGGAATTaGGCACTTCATCAACATATC +
Preference number: 5 (lower is better)
Translates to: PNKESYDERQKDEEAQDHVSQWN*ALHQHI
Trigger: GATATGTTGATGAAGTGCCAAATTCCATTGTGACAC...GTGATCCTGGGCTTCTTCATCTTTCTGCCTTTCATCGTAACTTTCCTTGTTGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR CAA 90 bp ACAAGGAAAGTTACGATGAAAGGCAGAAAGATGAAGAAGCCCAGGATCACCCAGTTTTTATCCTGCTCATaGAAATGGCCTTTATCAAGC +
Preference number: 5 (lower is better)
Translates to: TRKVTMKGRKMKKPRITQFLSCS*KWPLSS
Trigger: GCTTGATAAAGGCCATTTCAATGAGCAGGATAAAAA...CTGGGTGATCCTGGGCTTCTTCATCTTTCTGCCTTTCATCGTAACTTTCCTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR CAA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTATGCAATGAATGGCATTaGTGGTCCACACACAGTGCC +
Preference number: 5 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLCNEWH*WSTHSA
Trigger: GGCACTGTGTGTGGACCACAAATGCCATTCATTGCA...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138232.2
CDS TCA 90 bp TCTGACCACAATTCCAAGGAGGCTAACACAACACTCAATTTCAGCTaGGTGAGCATAGCGTTAACAAGACCAATAATCTGGAAAATCTTC +
Preference number: 5 (lower is better)
Translates to: SDHNSKEANTTLNFS*VSIALTRPIIWKIF
Trigger: GAAGATTTTCCAGATTATTGGTCTTGTTAACGCTATGCTCACTCAGCTGAAATTGAGTGTTGTGTTAGCCTCCTTGGAATTGTGGTCAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS-3UTR CAA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTACTATGTGCTCAAACCTaGCTGAAGACTCCAGTGGTT +
Preference number: 5 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLLCAQT*LKTPVV
Trigger: AACCACTGGAGTCTTCAGCAAGGTTTGAGCACATAG...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR CAA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTACATTTCCTGCTAGCATaGAGCTGTCGCTCTTCACTT +
Preference number: 5 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLHFLLA*SCRSSL
Trigger: AAGTGAAGAGCGACAGCTCAATGCTAGCAGGAAATG...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR CAA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTACATATCCCATTCCCTTaGCACTTCTTAGTGGCGTTG +
Preference number: 5 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLHIPFP*HFLVAL
Trigger: CAACGCCACTAAGAAGTGCAAAGGGAATGGGATATG...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR CAA 90 bp CCCTCATATTTTGTGTTCTCCCTGAGGCACGATTTTCCTTTCGTTTCTCTTCATACTGCGTGTCAAAATTaGAAACATAGTGCATGTAGT +
Preference number: 5 (lower is better)
Translates to: PSYFVFSLRHDFPFVSLHTACQN*KHSACS
Trigger: ACTACATGCACTATGTTTCAAATTTTGACACGCAGT...ATGAAGAGAAACGAAAGGAAAATCGTGCCTCAGGGAGAACACAAAATATGAGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000173833.3
CDS-3UTR CAA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTACACTTCTTAGTGGCGTaGCAGTCATTTCCTGTGAAA +
Preference number: 5 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLHFLVA*QSFPVK
Trigger: TTTCACAGGAAATGACTGCAACGCCACTAAGAAGTG...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS TCA 90 bp TTAGACTTTGAGGTAACAGTTGTGAATGATTTTTATCCTGCTCATTaGAATGGCCTTTATCAAGCTGGTCTATCTGCCAAACATGGCTGT +
Preference number: 5 (lower is better)
Translates to: LDFEVTVVNDFYPAH*NGLYQAGLSAKHGC
Trigger: ACAGCCATGTTTGGCAGATAGACCAGCTTGATAAAGGCCATTTCAATGAGCAGGATAAAAATCATTCACAACTGTTACCTCAAAGTCTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS-3UTR CAA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTAGCAGCACTCTTTAAATaGACATTCCGTCTCATTACC +
Preference number: 5 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLAALFK*TFRLIT
Trigger: GGTAATGAGACGGAATGTCAATTTAAAGAGTGCTGC...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR CAA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTAGTGTCACAATGGAATTaGGCACTTCATCAACATATC +
Preference number: 5 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLVSQWN*ALHQHI
Trigger: GATATGTTGATGAAGTGCCAAATTCCATTGTGACAC...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR CAA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTATTTTTATCCTGCTCATaGAAATGGCCTTTATCAAGC +
Preference number: 5 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLFLSCS*KWPLSS
Trigger: GCTTGATAAAGGCCATTTCAATGAGCAGGATAAAAA...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR CAA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTAACTGCGTGTCAAAATTaGAAACATAGTGCATGTAGT +
Preference number: 5 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLTACQN*KHSACS
Trigger: ACTACATGCACTATGTTTCAAATTTTGACACGCAGT...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS-3UTR CAA 90 bp TTATTTTCCAAAAGTCTGAGATTTAAAGTGTATCCACCGGTAACAGAGCGGTTAGTAGTCAGGAAAGCATaGGCAATTACCAAAGTTATT +
Preference number: 5 (lower is better)
Translates to: LFSKSLRFKVYPPVTERLVVRKA*AITKVI
Trigger: AATAACTTTGGTAATTGCCAATGCTTTCCTGACTAC...TAACCGCTCTGTTACCGGTGGATACACTTTAAATCTCAGACTTTTGGAAAATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033957.12
CDS TCA 72 bp CTCCGCCCTTGCGTGGCTCTATCTTCTGCGGCACTGTaGTATGCAGGCATATTCCTTCCGAATCGAGGCGGG +
Preference number: 6 (lower is better)
Translates to: LRPCVALSSAAL*YAGIFLPNRGG
Trigger: CCCGCCTCGATTCGGAAGGAATATGCCTGCATATCACAGTGCCGCAGAAGATAGAGCCACGCAAGGGCGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS GCA 72 bp CCCTTGCGTGGCTCTATCTTCTGCGGCACTGTGATATaGAGGCATATTCCTTCCGAATCGAGGCGGGCAAAC +
Preference number: 6 (lower is better)
Translates to: PLRGSIFCGTVI*RHIPSESRRAN
Trigger: GTTTGCCCGCCTCGATTCGGAAGGAATATGCCTGCATATCACAGTGCCGCAGAAGATAGAGCCACGCAAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS GCA 72 bp CCTTCTGCATCTCCGCCCTTGCGTGGCTCTATCTTCTaGGGCACTGTGATATGCAGGCATATTCCTTCCGAA +
Preference number: 6 (lower is better)
Translates to: PSASPPLRGSIF*GTVICRHIPSE
Trigger: TTCGGAAGGAATATGCCTGCATATCACAGTGCCGCAGAAGATAGAGCCACGCAAGGGCGGAGATGCAGAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS CCA 72 bp TCCTTGGCCGATTTCTGGTGCAATGAATGGCATTTGTaGTCCACACACAGTGCCGTCAGCCACGTATGCGCT +
Preference number: 6 (lower is better)
Translates to: SLADFWCNEWHL*STHSAVSHVCA
Trigger: AGCGCATACGTGGCTGACGGCACTGTGTGTGGACCACAAATGCCATTCATTGCACCAGAAATCGGCCAAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138232.2
CDS GCA 72 bp ATATGCAGATCCCAACCTGCACAAATGGCCGTTCAGTaGAAAGGTGTCAGGAACACAGTGGCTAGAGGATCC +
Preference number: 6 (lower is better)
Translates to: ICRSQPAQMAVQ*KGVRNTVARGS
Trigger: GGATCCTCTAGCCACTGTGTTCCTGACACCTTTGCACTGAACGGCCATTTGTGCAGGTTGGGATCTGCATAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS TCA 72 bp ACCCGCAACATAGCTTTTACTGCATATTTCACCTGGTaGTGCCGCTCCGATGTATTTCGGGCGTCTCCTGTA +
Preference number: 6 (lower is better)
Translates to: TRNIAFTAYFTW*CRSDVFRASPV
Trigger: TACAGGAGACGCCCGAAATACATCGGAGCGGCATCACCAGGTGAAATATGCAGTAAAAGCTATGTTGCGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS GCA 72 bp AAAGTCTTCTTCCCACTGGAACTCAGTGCTCCCTGCTaGATTATGCATGGAGCGCTGGGACAGGAACAATTT +
Preference number: 6 (lower is better)
Translates to: KVFFPLELSAPC*IMHGALGQEQF
Trigger: AAATTGTTCCTGTCCCAGCGCTCCATGCATAATGCAGCAGGGAGCACTGAGTTCCAGTGGGAAGAAGACTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS GCA 72 bp GGCATCTTCCATTGTAGCAATATGCAGATCCCAACCTaGACAAATGGCCGTTCAGTGCAAAGGTGTCAGGAA +
Preference number: 6 (lower is better)
Translates to: GIFHCSNMQIPT*TNGRSVQRCQE
Trigger: TTCCTGACACCTTTGCACTGAACGGCCATTTGTGCAGGTTGGGATCTGCATATTGCTACAATGGAAGATGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS CCA 72 bp AAATGGCCTTTATCAAGCTGGTCTATCTGCCAAACATaGCTGTCATTTCCTGCTAGCATTGAGCTGTCGCTC +
Preference number: 6 (lower is better)
Translates to: KWPLSSWSICQT*LSFPASIELSL
Trigger: GAGCGACAGCTCAATGCTAGCAGGAAATGACAGCCATGTTTGGCAGATAGACCAGCTTGATAAAGGCCATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS CCA 72 bp AAATGGCCGTTCAGTGCAAAGGTGTCAGGAACACAGTaGCTAGAGGATCCATCGCAATATTCTGTGAAGTCA +
Preference number: 6 (lower is better)
Translates to: KWPFSAKVSGTQ*LEDPSQYSVKS
Trigger: TGACTTCACAGAATATTGCGATGGATCCTCTAGCCACTGTGTTCCTGACACCTTTGCACTGAACGGCCATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS CAA 90 bp CAAGCTGGTCTATCTGCCAAACATGGCTGTCATTTCCTGCTAGCATaGAGCTGTCGCTCTTCACTTGATAAACTATGTGCTCAAACCTTG +
Preference number: 6 (lower is better)
Translates to: QAGLSAKHGCHFLLA*SCRSSLDKLCAQTL
Trigger: CAAGGTTTGAGCACATAGTTTATCAAGTGAAGAGCGACAGCTCAATGCTAGCAGGAAATGACAGCCATGTTTGGCAGATAGACCAGCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS TCA 72 bp TCACCAGCTTCCATGATTCCATTGCCACACACGGCTTaGTTTGGTTGCAATACATGCACATTTGACAGGTCA +
Preference number: 6 (lower is better)
Translates to: SPASMIPLPHTA*FGCNTCTFDRS
Trigger: TGACCTGTCAAATGTGCATGTATTGCAACCAAATCAAGCCGTGTGTGGCAATGGAATCATGGAAGCTGGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS GCA 72 bp CTGGATACATACCAACACCCGCAACATAGCTTTTACTaGATATTTCACCTGGTGATGCCGCTCCGATGTATT +
Preference number: 6 (lower is better)
Translates to: LDTYQHPQHSFY*IFHLVMPLRCI
Trigger: AATACATCGGAGCGGCATCACCAGGTGAAATATGCAGTAAAAGCTATGTTGCGGGTGTTGGTATGTATCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS CAA 72 bp CTATCTGCCAAACATGGCTGTCATTTCCTGCTAGCATaGAGCTGTCGCTCTTCACTTGATAAACTATGTGCT +
Preference number: 6 (lower is better)
Translates to: LSAKHGCHFLLA*SCRSSLDKLCA
Trigger: AGCACATAGTTTATCAAGTGAAGAGCGACAGCTCAATGCTAGCAGGAAATGACAGCCATGTTTGGCAGATAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS CAA 72 bp CACACACGGCTTGATTTGGTTGCAATACATGCACATTaGACAGGTCACCAAGACACTGCGTGTCAAAATTTG +
Preference number: 6 (lower is better)
Translates to: HTRLDLVAIHAH*TGHQDTACQNL
Trigger: CAAATTTTGACACGCAGTGTCTTGGTGACCTGTCAAATGTGCATGTATTGCAACCAAATCAAGCCGTGTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS TCA 72 bp TCCTATGTGAAGGCCAATCAGTTGAGTGATAACCACTaGGAATCCCTCCAAACCTATGTCTTCTGGATACAT +
Preference number: 6 (lower is better)
Translates to: SYVKANQLSDNH*ESLQTYVFWIH
Trigger: ATGTATCCAGAAGACATAGGTTTGGAGGGATTCTCAGTGGTTATCACTCAACTGATTGGCCTTCACATAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS CCA 72 bp TTTTTATCCTGCTCATTGAAATGGCCTTTATCAAGCTaGTCTATCTGCCAAACATGGCTGTCATTTCCTGCT +
Preference number: 6 (lower is better)
Translates to: FLSCSLKWPLSS*SICQTWLSFPA
Trigger: AGCAGGAAATGACAGCCATGTTTGGCAGATAGACCAGCTTGATAAAGGCCATTTCAATGAGCAGGATAAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS CAA 72 bp CATTTGACAGGTCACCAAGACACTGCGTGTCAAAATTaGAAACATAGTGCATGTAGTCATGCAAGCTACAGT +
Preference number: 6 (lower is better)
Translates to: HLTGHQDTACQN*KHSACSHASYS
Trigger: ACTGTAGCTTGCATGACTACATGCACTATGTTTCAAATTTTGACACGCAGTGTCTTGGTGACCTGTCAAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS CAA 72 bp GTGGCGTTGCAGTCATTTCCTGTGAAATTAACTTCTTaGCAGGTTCCGTTTATACAATACATTTGTGGTCCA +
Preference number: 6 (lower is better)
Translates to: VALQSFPVKLTS*QVPFIQYICGP
Trigger: TGGACCACAAATGTATTGTATAAACGGAACCTGCAAAGAAGTTAATTTCACAGGAAATGACTGCAACGCCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS TCA 72 bp GAGGTAACAGTTGTGAATGATTTTTATCCTGCTCATTaGAATGGCCTTTATCAAGCTGGTCTATCTGCCAAA +
Preference number: 6 (lower is better)
Translates to: EVTVVNDFYPAH*NGLYQAGLSAK
Trigger: TTTGGCAGATAGACCAGCTTGATAAAGGCCATTTCAATGAGCAGGATAAAAATCATTCACAACTGTTACCTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3
CDS TCA 72 bp TGTAAAATATCAGTAGCATTTCCGTCAGTAGAAATATaGTTTTTATCTGACCACAATTCCAAGGAGGCTAAC +
Preference number: 6 (lower is better)
Translates to: CKISVAFPSVEI*FLSDHNSKEAN
Trigger: GTTAGCCTCCTTGGAATTGTGGTCAGATAAAAATCATATTTCTACTGACGGAAATGCTACTGATATTTTACA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033957.12
ENSMUST00000173833.3