RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ADAM12 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054555

Ensembl transcript IDs: ENSMUST00000067680.11, ENSMUST00000127524.2, ENSMUST00000134504.8, ENSMUST00000138363.2

Found 392 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCTGGGCGCCCTACTGCCCAGCCATCGTCCTCCTGGTTGTCGGGGTaGTTCTGGCTCAGAGTGCTCAGTAAACATCTGCTGAGAGGCAGG +
Preference number: 1 (lower is better)
Translates to: AGRPTAQPSSSWLSG*FWLRVLSKHLLRGR
Trigger: CCTGCCTCTCAGCAGATGTTTACTGAGCACTCTGAGCCAGAAGCACCCCGACAACCAGGAGGACGATGGCTGGGCAGTAGGGCGCCCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR GCA 90 bp CCATGCCAGCTAGCACTCTGCAAAGGGCAGCCAGAGAGAAGCCCCTaGCAGCTCTCAAAGCAGAGCCTTGTGCAGCACCTCAGCCGTCCT +
Preference number: 1 (lower is better)
Translates to: PCQLALCKGQPERSP*QLSKQSLVQHLSRP
Trigger: AGGACGGCTGAGGTGCTGCACAAGGCTCTGCTTTGAGAGCTGGCAGGGGCTTCTCTCTGGCTGCCCTTTGCAGAGTGCTAGCTGGCATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CCA 90 bp GAGCTGCAAGTGGCTGGGCGCCCTACTGCCCAGCCATCGTCCTCCTaGTTGTCGGGGTGCTTCTGGCTCAGAGTGCTCAGTAAACATCTG +
Preference number: 1 (lower is better)
Translates to: ELQVAGRPTAQPSSS*LSGCFWLRVLSKHL
Trigger: CAGATGTTTACTGAGCACTCTGAGCCAGAAGCACCCCGACAACCAGGAGGACGATGGCTGGGCAGTAGGGCGCCCAGCCACTTGCAGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 90 bp CGCCCTACTGCCCAGCCATCGTCCTCCTGGTTGTCGGGGTGCTTCTaGCTCAGAGTGCTCAGTAAACATCTGCTGAGAGGCAGGAGGACT +
Preference number: 1 (lower is better)
Translates to: RPTAQPSSSWLSGCF*LRVLSKHLLRGRRT
Trigger: AGTCCTCCTGCCTCTCAGCAGATGTTTACTGAGCACTCTGAGCCAGAAGCACCCCGACAACCAGGAGGACGATGGCTGGGCAGTAGGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 90 bp AGGGAATTAAAACACAAAGCGGGCCTCAGAGGAAAGAGCTGCAAGTaGCTGGGCGCCCTACTGCCCAGCCATCGTCCTCCTGGTTGTCGG +
Preference number: 1 (lower is better)
Translates to: RELKHKAGLRGKSCK*LGALLPSHRPPGCR
Trigger: CCGACAACCAGGAGGACGATGGCTGGGCAGTAGGGCGCCCAGCCACTTGCAGCTCTTTCCTCTGAGGCCCGCTTTGTGTTTTAATTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 90 bp TCTGAGAGCTTCAGGGTGCAGGACCTGAAGGCCATTAGCATGCAGTaGCCCAAGACCTTCCTGAAGGCCCTGGCTACAACCCAAGATAGG +
Preference number: 1 (lower is better)
Translates to: SESFRVQDLKAISMQ*PKTFLKALATTQDR
Trigger: CCTATCTTGGGTTGTAGCCAGGGCCTTCAGGAAGGTCTTGGGCCACTGCATGCTAATGGCCTTCAGGTCCTGCACCCTGAAGCTCTCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR GCA 90 bp ACCACTGTTCCCGATGTAAACAACATGCCATGCCAGCTAGCACTCTaGAAAGGGCAGCCAGAGAGAAGCCCCTGCCAGCTCTCAAAGCAG +
Preference number: 1 (lower is better)
Translates to: TTVPDVNNMPCQLAL*KGQPERSPCQLSKQ
Trigger: CTGCTTTGAGAGCTGGCAGGGGCTTCTCTCTGGCTGCCCTTTGCAGAGTGCTAGCTGGCATGGCATGTTGTTTACATCGGGAACAGTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR TCA 90 bp CCTCCCCATCACTCCCACCTGGAGGAGGAGCTCATACGCTTCAGCTaGGGCTTTGTGTGTCTCACAAGACAACGCCCACACAACTCTATA +
Preference number: 1 (lower is better)
Translates to: PPHHSHLEEELIRFS*GFVCLTRQRPHNSI
Trigger: TATAGAGTTGTGTGGGCGTTGTCTTGTGAGACACACAAAGCCTCAGCTGAAGCGTATGAGCTCCTCCTCCAGGTGGGAGTGATGGGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR GCA 90 bp TGTGCAGCACCTCAGCCGTCCTTGCTTCCTAGAGGTGCTCATGGCTaGTCAGCTCAAGGTCAGATGTTTGCCCAGATTAGGATTCCAGTC +
Preference number: 1 (lower is better)
Translates to: CAAPQPSLLPRGAHG*SAQGQMFAQIRIPV
Trigger: GACTGGAATCCTAATCTGGGCAAACATCTGACCTTGAGCTGAGCAGCCATGAGCACCTCTAGGAAGCAAGGACGGCTGAGGTGCTGCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CCA 90 bp AGTAAACATCTGCTGAGAGGCAGGAGGACTCTTAGGCCTTCTTGTTaGCCCAGCTCCAGCCTCTTTGTAGCACCATGGGGATCACAGGCT +
Preference number: 1 (lower is better)
Translates to: SKHLLRGRRTLRPSC*PSSSLFVAPWGSQA
Trigger: AGCCTGTGATCCCCATGGTGCTACAAAGAGGCTGGAGCTGGGCCAACAAGAAGGCCTAAGAGTCCTCCTGCCTCTCAGCAGATGTTTACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR GCA 90 bp CTTTCTTGTAGAAACACCACTGTTCCCGATGTAAACAACATGCCATaGCAGCTAGCACTCTGCAAAGGGCAGCCAGAGAGAAGCCCCTGC +
Preference number: 1 (lower is better)
Translates to: LSCRNTTVPDVNNMP*QLALCKGQPERSPC
Trigger: GCAGGGGCTTCTCTCTGGCTGCCCTTTGCAGAGTGCTAGCTGGCATGGCATGTTGTTTACATCGGGAACAGTGGTGTTTCTACAAGAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR GCA 90 bp GGTAATTTGCTTAGCTCTAAATGGGCAGGAGACGGAGGTCTGCAGTaGCCAGGCAGTGGCTTTCTTGTAGAAACACCACTGTTCCCGATG +
Preference number: 1 (lower is better)
Translates to: GNLLSSKWAGDGGLQ*PGSGFLVETPLFPM
Trigger: CATCGGGAACAGTGGTGTTTCTACAAGAAAGCCACTGCCTGGGCACTGCAGACCTCCGTCTCCTGCCCATTTAGAGCTAAGCAAATTACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CCA 90 bp CACAAAGCACCACAGCACAGCACCGATGGCAGTGGCTCCAGGGTCTaGAGAGAATGGTGTTTTAAACACTTTAGAAACTCGGAAAGTTGG +
Preference number: 1 (lower is better)
Translates to: HKAPQHSTDGSGSRV*REWCFKHFRNSESW
Trigger: CCAACTTTCCGAGTTTCTAAAGTGTTTAAAACACCATTCTCTCCAGACCCTGGAGCCACTGCCATCGGTGCTGTGCTGTGGTGCTTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR GCA 90 bp AAGGTAGCTTCCCAGTCACATACTGAAAGAGCAGAGGGAAAGAGTTaGCTGGCTGAGGTTGCCTTTCGTGAGCAACTCAGTATTCGGAAA +
Preference number: 1 (lower is better)
Translates to: KVASQSHTERAEGKS*LAEVAFREQLSIRK
Trigger: TTTCCGAATACTGAGTTGCTCACGAAAGGCAACCTCAGCCAGGCAACTCTTTCCCTCTGCTCTTTCAGTATGTGACTGGGAAGCTACCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CCA 90 bp GTATTACAGTCCAGAAGACAATGTGGTAATTTGCTTAGCTCTAAATaGGCAGGAGACGGAGGTCTGCAGTGCCCAGGCAGTGGCTTTCTT +
Preference number: 1 (lower is better)
Translates to: VLQSRRQCGNLLSSK*AGDGGLQCPGSGFL
Trigger: AAGAAAGCCACTGCCTGGGCACTGCAGACCTCCGTCTCCTGCCCATTTAGAGCTAAGCAAATTACCACATTGTCTTCTGGACTGTAATAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR GCA 90 bp TGCCACAAATATTCAGATGACTGGCTATCCCAACCACTACCAAGTTaGCCTGACGGGAGGGCTGTTAATTGTGTTTCTAGTCTCATGAGA +
Preference number: 1 (lower is better)
Translates to: CHKYSDDWLSQPLPS*PDGRAVNCVSSLMR
Trigger: TCTCATGAGACTAGAAACACAATTAACAGCCCTCCCGTCAGGGCAACTTGGTAGTGGTTGGGATAGCCAGTCATCTGAATATTTGTGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR TCA 90 bp CATAACAGCCTTGGGAAGGTGGGGAGCTATTTTCCGATAAGGCCTTaGATAGAAAGTAAACATCTCATCTTAGGTCCCATCAAGCAGGGT +
Preference number: 1 (lower is better)
Translates to: HNSLGKVGSYFPIRP*IESKHLILGPIKQG
Trigger: ACCCTGCTTGATGGGACCTAAGATGAGATGTTTACTTTCTATTCAAGGCCTTATCGGAAAATAGCTCCCCACCTTCCCAAGGCTGTTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR GCA 90 bp GTGCTTTGTCCAATGGCTACTAATAAGGATACCAGACTCAGGCTGTaGCATGAGAAGAGCATTCCACGTGGTTATAGCTTTTGCAAGCAT +
Preference number: 1 (lower is better)
Translates to: VLCPMATNKDTRLRL*HEKSIPRGYSFCKH
Trigger: ATGCTTGCAAAAGCTATAACCACGTGGAATGCTCTTCTCATGGCACAGCCTGAGTCTGGTATCCTTATTAGTAGCCATTGGACAAAGCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR TCA 90 bp ATGTTACTTTCTTGGAGAATTTCAGATCACGCAGAACATGATGTATaGTATAGAAAGGTAGGCAGGTGGTGGGGCTTTCAACTTGCAGGG +
Preference number: 1 (lower is better)
Translates to: MLLSWRISDHAEHDV*YRKVGRWWGFQLAG
Trigger: CCCTGCAAGTTGAAAGCCCCACCACCTGCCTACCTTTCTATATCATACATCATGTTCTGCGTGATCTGAAATTCTCCAAGAAAGTAACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR GCA 90 bp ATGGAGAAAGGGAGAGAGAAACTACCCTCTGTCAAAGAACCCTCATaGTGGCTATTGGGTCCCAATTTTGTTAAAATTGAAGTTACTGCT +
Preference number: 1 (lower is better)
Translates to: MEKGREKLPSVKEPS*WLLGPNFVKIEVTA
Trigger: AGCAGTAACTTCAATTTTAACAAAATTGGGACCCAATAGCCAGCATGAGGGTTCTTTGACAGAGGGTAGTTTCTCTCTCCCTTTCTCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 90 bp AAGTATTTATGTTTATATGTCTGTACTCCACAAAAGGCATGGAAATaGTACATTCATATGTGTGCCCATGTCTCCTGCAAGGAGTCCCCC +
Preference number: 1 (lower is better)
Translates to: KYLCLYVCTPQKAWK*YIHMCAHVSCKESP
Trigger: GGGGGACTCCTTGCAGGAGACATGGGCACACATATGAATGTACCATTTCCATGCCTTTTGTGGAGTACAGACATATAAACATAAATACTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 90 bp GAGAAAGGGAGAGAGAAACTACCCTCTGTCAAAGAACCCTCATGCTaGCTATTGGGTCCCAATTTTGTTAAAATTGAAGTTACTGCTAAA +
Preference number: 1 (lower is better)
Translates to: EKGREKLPSVKEPSC*LLGPNFVKIEVTAK
Trigger: TTTAGCAGTAACTTCAATTTTAACAAAATTGGGACCCAATAGCCAGCATGAGGGTTCTTTGACAGAGGGTAGTTTCTCTCTCCCTTTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 90 bp GGAGAGAGAAACTACCCTCTGTCAAAGAACCCTCATGCTGGCTATTaGGTCCCAATTTTGTTAAAATTGAAGTTACTGCTAAATATGCTT +
Preference number: 1 (lower is better)
Translates to: GERNYPLSKNPHAGY*VPILLKLKLLLNML
Trigger: AAGCATATTTAGCAGTAACTTCAATTTTAACAAAATTGGGACCCAATAGCCAGCATGAGGGTTCTTTGACAGAGGGTAGTTTCTCTCTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 90 bp GAATGGAAGTATTTATGTTTATATGTCTGTACTCCACAAAAGGCATaGAAATGGTACATTCATATGTGTGCCCATGTCTCCTGCAAGGAG +
Preference number: 1 (lower is better)
Translates to: EWKYLCLYVCTPQKA*KWYIHMCAHVSCKE
Trigger: CTCCTTGCAGGAGACATGGGCACACATATGAATGTACCATTTCCATGCCTTTTGTGGAGTACAGACATATAAACATAAATACTTCCATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR TCA 90 bp GTTATTCTTTTATGCATCTGTGACGTGGATTTATTTACCCAGTCATaGAGACCATGCTTCCCAATGCTGGATACAGTTTTGGATTCTAGA +
Preference number: 1 (lower is better)
Translates to: VILLCICDVDLFTQS*RPCFPMLDTVLDSR
Trigger: TCTAGAATCCAAAACTGTATCCAGCATTGGGAAGCATGGTCTTCATGACTGGGTAAATAAATCCACGTCACAGATGCATAAAAGAATAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 90 bp ACGTGGATTTATTTACCCAGTCATGAAGACCATGCTTCCCAATGCTaGATACAGTTTTGGATTCTAGAAAGCAAACCAAATTCCTTATCT +
Preference number: 1 (lower is better)
Translates to: TWIYLPSHEDHASQC*IQFWILESKPNSLS
Trigger: AGATAAGGAATTTGGTTTGCTTTCTAGAATCCAAAACTGTATCCAGCATTGGGAAGCATGGTCTTCATGACTGGGTAAATAAATCCACGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR TCA 90 bp AAGTCTTTACAGTTGTGGATGTTTGGCCTTAATACAACTACTGAATaGCATATCAGTTACAGAAATTTTGTATGCATCTCAGTGGCAGCA +
Preference number: 1 (lower is better)
Translates to: KSLQLWMFGLNTTTE*HISYRNFVCISVAA
Trigger: TGCTGCCACTGAGATGCATACAAAATTTCTGTAACTGATATGTCATTCAGTAGTTGTATTAAGGCCAAACATCCACAACTGTAAAGACTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CAA 90 bp CTGCAAGTGGCTGGGCGCCCTACTGCCCAGCCATCGTCCTCCTGGTaGTCGGGGTGCTTCTGGCTCAGAGTGCTCAGTAAACATCTGCTG +
Preference number: 2 (lower is better)
Translates to: LQVAGRPTAQPSSSW*SGCFWLRVLSKHLL
Trigger: CAGCAGATGTTTACTGAGCACTCTGAGCCAGAAGCACCCCGACAACCAGGAGGACGATGGCTGGGCAGTAGGGCGCCCAGCCACTTGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR CCA 90 bp CTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGAAGGTGGGGACAGCACAGCACCGATaGCAGTGGCTCCAGGGTCTG +
Preference number: 2 (lower is better)
Translates to: LGCPELCVWYHNSLGKVGTAQHR*QWLQGL
Trigger: CAGACCCTGGAGCCACTGCCATCGGTGCTGTGCTGT...CCCCACCTTCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR CCA 90 bp GCTGGTAAGGCACCATCGGCATCCTTAGTGGACACTGGGGAGATGGCAGAAGATACAGCACAGCACCGATaGCAGTGGCTCCAGGGTCTG +
Preference number: 2 (lower is better)
Translates to: AGKAPSASLVDTGEMAEDTAQHR*QWLQGL
Trigger: CAGACCCTGGAGCCACTGCCATCGGTGCTGTGCTGT...ATCTTCTGCCATCTCCCCAGTGTCCACTAAGGATGCCGATGGTGCCTTACCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR CCA 90 bp AGAGGAAAGAGCTGCAAGTGGCTGGGCGCCCTACTGCCCAGCCATCGTCCTCCTTTGTCGGGGTGCTTCTaGCTCAGAGTGCTCAGTAAA +
Preference number: 2 (lower is better)
Translates to: RGKSCKWLGALLPSHRPPLSGCF*LRVLSK
Trigger: TTTACTGAGCACTCTGAGCCAGAAGCACCCCGACAA...AGGAGGACGATGGCTGGGCAGTAGGGCGCCCAGCCACTTGCAGCTCTTTCCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR GCA 90 bp TCGGCATCCTTAGTGGACACTGGGGAGATGGCAGAAGATCATGGCTCCAACTTCGATGGTACAAATGCCTaGTACGGCGCCCTGCGCAGT +
Preference number: 2 (lower is better)
Translates to: SASLVDTGEMAEDHGSNFDGTNA*YGALRS
Trigger: ACTGCGCAGGGCGCCGTAGCAGGCATTTGTACCATC...GAAGTTGGAGCCATGATCTTCTGCCATCTCCCCAGTGTCCACTAAGGATGCCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR GCA 90 bp GTAATTTGCTTAGCTCTAAATGGGCAGGAGACGGAGGTCTGCAGTGCCCAGGCACCAGAGAGAAGCCCCTaGCAGCTCTCAAAGCAGAGC +
Preference number: 2 (lower is better)
Translates to: VICLALNGQETEVCSAQAPERSP*QLSKQS
Trigger: GCTCTGCTTTGAGAGCTGGCAGGGGCTTCTCTCTGG...TGCCTGGGCACTGCAGACCTCCGTCTCCTGCCCATTTAGAGCTAAGCAAATTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR CCA 90 bp AGCTGCTGGCTAGAAAGCAGATCCTACTTGTTGTCTGAGAGCTTCAGGGTGCAGCAGCACCGATGGCAGTaGCTCCAGGGTCTGGAGAGA +
Preference number: 2 (lower is better)
Translates to: SCWLESRSYLLSESFRVQQHRWQ*LQGLER
Trigger: TCTCTCCAGACCCTGGAGCCACTGCCATCGGTGCTG...CTGCACCCTGAAGCTCTCAGACAACAAGTAGGATCTGCTTTCTAGCCAGCAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR GCA 90 bp TTTGGGTGCTTTGTCCAATGGCTACTAATAAGGATACCAGACTCAGGCTGTGCCCAGGAGACGGAGGTCTaGAGTGCCCAGGCAGTGGCT +
Preference number: 2 (lower is better)
Translates to: FGCFVQWLLIRIPDSGCAQETEV*SAQAVA
Trigger: AGCCACTGCCTGGGCACTGCAGACCTCCGTCTCCTG...GGCACAGCCTGAGTCTGGTATCCTTATTAGTAGCCATTGGACAAAGCACCCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR CCA 90 bp TCGGCATCCTTAGTGGACACTGGGGAGATGGCAGAAGATCATGGCTCCAACTTCAGGGAAAGAGTTGCCTaGCTGAGGTTGCCTTTCGTG +
Preference number: 2 (lower is better)
Translates to: SASLVDTGEMAEDHGSNFRERVA*LRLPFV
Trigger: CACGAAAGGCAACCTCAGCCAGGCAACTCTTTCCCT...GAAGTTGGAGCCATGATCTTCTGCCATCTCCCCAGTGTCCACTAAGGATGCCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CAA 90 bp CCAGGTTCTCTCCAAAGCTGCTGGCTAGAAAGCAGATCCTACTTGTaGTCTGAGAGCTTCAGGGTGCAGGACCTGAAGGCCATTAGCATG +
Preference number: 2 (lower is better)
Translates to: PGSLQSCWLESRSYL*SESFRVQDLKAISM
Trigger: CATGCTAATGGCCTTCAGGTCCTGCACCCTGAAGCTCTCAGACAACAAGTAGGATCTGCTTTCTAGCCAGCAGCTTTGGAGAGAACCTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR TCA 90 bp GCCAGGTTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTTGTAGAAAAGCCCTGTaGTGGTACAAATGCCTGCTA +
Preference number: 2 (lower is better)
Translates to: ARFSLGCPELCVWYHNSLCRKAL*WYKCLL
Trigger: TAGCAGGCATTTGTACCATCACAGGGCTTTTCTACA...AAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAACCTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR TCA 90 bp GACTGCTGTCATTTACCTTCTGTCGTGAAAGCTAGTCATCCTACGCCCCATCTGTCAGGGTGCAGGACCTaGAGGCCATTAGCATGCAGT +
Preference number: 2 (lower is better)
Translates to: DCCHLPSVVKASHPTPHLSGCRT*RPLACS
Trigger: ACTGCATGCTAATGGCCTTCAGGTCCTGCACCCTGA...CAGATGGGGCGTAGGATGACTAGCTTTCACGACAGAAGGTAAATGACAGCAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR GCA 90 bp GTAATTTGCTTAGCTCTAAATGGGCAGGAGACGGAGGTCTGCAGTGCCCAGGCAGGTTCTCTCCAAAGCTaGTGGCTAGAAAGCAGATCC +
Preference number: 2 (lower is better)
Translates to: VICLALNGQETEVCSAQAGSLQS*WLESRS
Trigger: GGATCTGCTTTCTAGCCAGCAGCTTTGGAGAGAACC...TGCCTGGGCACTGCAGACCTCCGTCTCCTGCCCATTTAGAGCTAAGCAAATTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR GCA 90 bp CAGAAGGGAATTAAAACACAAAGCGGGCCTCAGAGGAAAGAGCTGCAAGTGGCTCAAAGCAGAGCCTTGTaGAGCACCTCAGCCGTCCTT +
Preference number: 2 (lower is better)
Translates to: QKGIKTQSGPQRKELQVAQSRAL*STSAVL
Trigger: AAGGACGGCTGAGGTGCTGCACAAGGCTCTGCTTTG...AGCCACTTGCAGCTCTTTCCTCTGAGGCCCGCTTTGTGTTTTAATTCCCTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR CCA 90 bp TTGCTTCTGAAGGTAGCTTCCCAGTCACATACTGAAAGAGCAGAGGGAAAGAGTCAGCACCGATGGCAGTaGCTCCAGGGTCTGGAGAGA +
Preference number: 2 (lower is better)
Translates to: LLLKVASQSHTERAEGKSQHRWQ*LQGLER
Trigger: TCTCTCCAGACCCTGGAGCCACTGCCATCGGTGCTG...ACTCTTTCCCTCTGCTCTTTCAGTATGTGACTGGGAAGCTACCTTCAGAAGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR CCA 90 bp AGAGGAAAGAGCTGCAAGTGGCTGGGCGCCCTACTGCCCAGCCATCGTCCTCCTCTTGTATTGATTTGTTaGAGAACAATGACCCATAGC +
Preference number: 2 (lower is better)
Translates to: RGKSCKWLGALLPSHRPPLVLIC*RTMTHS
Trigger: GCTATGGGTCATTGTTCTCCAACAAATCAATACAAG...AGGAGGACGATGGCTGGGCAGTAGGGCGCCCAGCCACTTGCAGCTCTTTCCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR CCA 90 bp TTCTGGCTCAGAGTGCTCAGTAAACATCTGCTGAGAGGCAGGAGGACTCTTAGGCTCTTTGTAGCACCATaGGGATCACAGGCTCCTGAG +
Preference number: 2 (lower is better)
Translates to: FWLRVLSKHLLRGRRTLRLFVAP*GSQAPE
Trigger: CTCAGGAGCCTGTGATCCCCATGGTGCTACAAAGAG...CCTAAGAGTCCTCCTGCCTCTCAGCAGATGTTTACTGAGCACTCTGAGCCAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR CCA 90 bp GTCAGAACAGAGCTAAGCAGTCTGTGGCCAGCTCGGGTTGTGCTGTTGGTTGCCGAGAGTTGGCTCTCTTaGATGACAGAGGTTTTGTCA +
Preference number: 2 (lower is better)
Translates to: VRTELSSLWPARVVLLVAESWLS*MTEVLS
Trigger: TGACAAAACCTCTGTCATCCAAGAGAGCCAACTCTC...GGCAACCAACAGCACAACCCGAGCTGGCCACAGACTGCTTAGCTCTGTTCTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CAA 90 bp TGCTTCCTAGAGGTGCTCATGGCTGCTCAGCTCAAGGTCAGATGTTaGCCCAGATTAGGATTCCAGTCTCCATCCTGGTATAACCACACC +
Preference number: 2 (lower is better)
Translates to: CFLEVLMAAQLKVRC*PRLGFQSPSWYNHT
Trigger: GGTGTGGTTATACCAGGATGGAGACTGGAATCCTAATCTGGGCAAACATCTGACCTTGAGCTGAGCAGCCATGAGCACCTCTAGGAAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR TCA 90 bp TTCCCTTCTGCTTCAAGGCACAGGCCAGCCATTAATGTTAGTTACCCTTCCAAATTCTGTCTTCACTGTTaGGGACCGGTCTGGGCTGGC +
Preference number: 2 (lower is better)
Translates to: FPSASRHRPAINVSYPSKFCLHC*GPVWAG
Trigger: GCCAGCCCAGACCGGTCCTCAACAGTGAAGACAGAA...TTTGGAAGGGTAACTAACATTAATGGCTGGCCTGTGCCTTGAAGCAGAAGGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR TCA 90 bp TCGGCATCCTTAGTGGACACTGGGGAGATGGCAGAAGATCATGGCTCCAACTTCTGGGTTGAGGCACCTTaGAGATTTGCTTCTGAAGGT +
Preference number: 2 (lower is better)
Translates to: SASLVDTGEMAEDHGSNFWVEAP*RFASEG
Trigger: ACCTTCAGAAGCAAATCTTCAAGGTGCCTCAACCCA...GAAGTTGGAGCCATGATCTTCTGCCATCTCCCCAGTGTCCACTAAGGATGCCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR GCA 90 bp TCAGACGAGGTAGAGGACTGCTGTCATTTACCTTCTGTCGTGAAAGCTAGTCATGATGGTACAAATGCCTaGTACGGCGCCCTGCGCAGT +
Preference number: 2 (lower is better)
Translates to: SDEVEDCCHLPSVVKASHDGTNA*YGALRS
Trigger: ACTGCGCAGGGCGCCGTAGCAGGCATTTGTACCATC...ATGACTAGCTTTCACGACAGAAGGTAAATGACAGCAGTCCTCTACCTCGTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR GCA 90 bp TTGCTTCTGAAGGTAGCTTCCCAGTCACATACTGAAAGAGCAGAGGGAAAGAGTGACGGAGGTCTGCAGTaGCCAGGCAGTGGCTTTCTT +
Preference number: 2 (lower is better)
Translates to: LLLKVASQSHTERAEGKSDGGLQ*PGSGFL
Trigger: AAGAAAGCCACTGCCTGGGCACTGCAGACCTCCGTC...ACTCTTTCCCTCTGCTCTTTCAGTATGTGACTGGGAAGCTACCTTCAGAAGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CAA 90 bp AGTCACATACTGAAAGAGCAGAGGGAAAGAGTTGCCTGGCTGAGGTaGCCTTTCGTGAGCAACTCAGTATTCGGAAACGGATTGCCTTGC +
Preference number: 2 (lower is better)
Translates to: SHILKEQRERVAWLR*PFVSNSVFGNGLPC
Trigger: GCAAGGCAATCCGTTTCCGAATACTGAGTTGCTCACGAAAGGCAACCTCAGCCAGGCAACTCTTTCCCTCTGCTCTTTCAGTATGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR TCA 90 bp TTCCCTTCTGCTTCAAGGCACAGGCCAGCCATTAATGTTAGTTACCCTTCCAAATCAGGGTGCAGGACCTaGAGGCCATTAGCATGCAGT +
Preference number: 2 (lower is better)
Translates to: FPSASRHRPAINVSYPSKSGCRT*RPLACS
Trigger: ACTGCATGCTAATGGCCTTCAGGTCCTGCACCCTGA...TTTGGAAGGGTAACTAACATTAATGGCTGGCCTGTGCCTTGAAGCAGAAGGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR CCA 90 bp CTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGAAGGTGGGGAGGGTCTGGAGAGAATaGTGTTTTAAACACTTTAGA +
Preference number: 2 (lower is better)
Translates to: LGCPELCVWYHNSLGKVGRVWRE*CFKHFR
Trigger: TCTAAAGTGTTTAAAACACCATTCTCTCCAGACCCT...CCCCACCTTCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR CCA 90 bp TCGGCATCCTTAGTGGACACTGGGGAGATGGCAGAAGATCATGGCTCCAACTTCAGTGGCTCCAGGGTCTaGAGAGAATGGTGTTTTAAA +
Preference number: 2 (lower is better)
Translates to: SASLVDTGEMAEDHGSNFSGSRV*REWCFK
Trigger: TTTAAAACACCATTCTCTCCAGACCCTGGAGCCACT...GAAGTTGGAGCCATGATCTTCTGCCATCTCCCCAGTGTCCACTAAGGATGCCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR CCA 90 bp ACGTGGATTTATTTACCCAGTCATGAAGACCATGCTTCCCAATGCTGGATACAGATGCCAGGTTCTCCCTaGGGTGTCCTGAGCTGTGTG +
Preference number: 2 (lower is better)
Translates to: TWIYLPSHEDHASQCWIQMPGSP*GVLSCV
Trigger: CACACAGCTCAGGACACCCCAGGGAGAACCTGGCAT...CTGTATCCAGCATTGGGAAGCATGGTCTTCATGACTGGGTAAATAAATCCACGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR TCA 90 bp TGCCATGAGAAGAGCATTCCACGTGGTTATAGCTTTTGCAAGCATATGGATTCTTTCTGTCTTCACTGTTaGGGACCGGTCTGGGCTGGC +
Preference number: 2 (lower is better)
Translates to: CHEKSIPRGYSFCKHMDSFCLHC*GPVWAG
Trigger: GCCAGCCCAGACCGGTCCTCAACAGTGAAGACAGAA...AGAATCCATATGCTTGCAAAAGCTATAACCACGTGGAATGCTCTTCTCATGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR TCA 90 bp GACTGCTGTCATTTACCTTCTGTCGTGAAAGCTAGTCATCCTACGCCCCATCTGTTCCCAGTCACATACTaGAAGAGCAGAGGGAAAGAG +
Preference number: 2 (lower is better)
Translates to: DCCHLPSVVKASHPTPHLFPVTY*KSRGKE
Trigger: CTCTTTCCCTCTGCTCTTTCAGTATGTGACTGGGAA...CAGATGGGGCGTAGGATGACTAGCTTTCACGACAGAAGGTAAATGACAGCAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR TCA 90 bp GTGATGTCATCCCATATGTGTAACCTGGAAACACTCACACAGAGCGCAAACTCGCTCATACGCTTCAGCTaGGGCTTTGTGTGTCTCACA +
Preference number: 2 (lower is better)
Translates to: VMSSHMCNLETLTQSANSLIRFS*GFVCLT
Trigger: TGTGAGACACACAAAGCCTCAGCTGAAGCGTATGAG...CGAGTTTGCGCTCTGTGTGAGTGTTTCCAGGTTACACATATGGGATGACATCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR GCA 90 bp TTCCCTTCTGCTTCAAGGCACAGGCCAGCCATTAATGTTAGTTACCCTTCCAAAAGAGGTGCTCATGGCTaGTCAGCTCAAGGTCAGATG +
Preference number: 2 (lower is better)
Translates to: FPSASRHRPAINVSYPSKRGAHG*SAQGQM
Trigger: CATCTGACCTTGAGCTGAGCAGCCATGAGCACCTCT...TTTGGAAGGGTAACTAACATTAATGGCTGGCCTGTGCCTTGAAGCAGAAGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR GCA 90 bp GGCATAAAAATGTCTCCTCAGAGACCAGTCAGGAGGATTTCTTCCCGTAGAATTTGCCAGCTAGCACTCTaGAAAGGGCAGCCAGAGAGA +
Preference number: 2 (lower is better)
Translates to: GIKMSPQRPVRRISSRRICQLAL*KGQPER
Trigger: TCTCTCTGGCTGCCCTTTGCAGAGTGCTAGCTGGCA...AATTCTACGGGAAGAAATCCTCCTGACTGGTCTCTGAGGAGACATTTTTATGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR GCA 90 bp AAGGAGATTTCTATCTCCAGAGTTGATCGACTAGATCTGGTTACTAGTTCACATCAGGAGACGGAGGTCTaGAGTGCCCAGGCAGTGGCT +
Preference number: 2 (lower is better)
Translates to: KEISISRVDRLDLVTSSHQETEV*SAQAVA
Trigger: AGCCACTGCCTGGGCACTGCAGACCTCCGTCTCCTG...ATGTGAACTAGTAACCAGATCTAGTCGATCAACTCTGGAGATAGAAATCTCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR CCA 90 bp GACTGCTGTCATTTACCTTCTGTCGTGAAAGCTAGTCATCCTACGCCCCATCTGTCTCTCCAAAGCTGCTaGCTAGAAAGCAGATCCTAC +
Preference number: 2 (lower is better)
Translates to: DCCHLPSVVKASHPTPHLSLQSC*LESRSY
Trigger: GTAGGATCTGCTTTCTAGCCAGCAGCTTTGGAGAGA...CAGATGGGGCGTAGGATGACTAGCTTTCACGACAGAAGGTAAATGACAGCAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR CCA 90 bp CCACAAAAGGCATGGAAATGGTACATTCATATGTGTGCCCATGTCTCCTGCAAGTGGACACTGGGGAGATaGCAGAAGATCATGGCTCCA +
Preference number: 2 (lower is better)
Translates to: PQKAWKWYIHMCAHVSCKWTLGR*QKIMAP
Trigger: TGGAGCCATGATCTTCTGCCATCTCCCCAGTGTCCA...CTTGCAGGAGACATGGGCACACATATGAATGTACCATTTCCATGCCTTTTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR TCA 90 bp GCTGGTAAGGCACCATCGGCATCCTTAGTGGACACTGGGGAGATGGCAGAAGATTTTCCGATAAGGCCTTaGATAGAAAGTAAACATCTC +
Preference number: 2 (lower is better)
Translates to: AGKAPSASLVDTGEMAEDFPIRP*IESKHL
Trigger: GAGATGTTTACTTTCTATTCAAGGCCTTATCGGAAA...ATCTTCTGCCATCTCCCCAGTGTCCACTAAGGATGCCGATGGTGCCTTACCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR TCA 90 bp TTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGAAGTTTCCGATAAGGCCTTaGATAGAAAGTAAACATCTC +
Preference number: 2 (lower is better)
Translates to: FSLGCPELCVWYHNSLGKFPIRP*IESKHL
Trigger: GAGATGTTTACTTTCTATTCAAGGCCTTATCGGAAA...CTTCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR TCA 90 bp AAGGAGATTTCTATCTCCAGAGTTGATCGACTAGATCTGGTTACTAGTTCACATCTCCCTGGGGTGTCCTaGGCTGTGTGTCTGGTACCA +
Preference number: 2 (lower is better)
Translates to: KEISISRVDRLDLVTSSHLPGVS*AVCLVP
Trigger: TGGTACCAGACACACAGCTCAGGACACCCCAGGGAG...ATGTGAACTAGTAACCAGATCTAGTCGATCAACTCTGGAGATAGAAATCTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR GCA 90 bp TTCCCTTCTGCTTCAAGGCACAGGCCAGCCATTAATGTTAGTTACCCTTCCAAAGGTTCTCTCCAAAGCTaGTGGCTAGAAAGCAGATCC +
Preference number: 2 (lower is better)
Translates to: FPSASRHRPAINVSYPSKGSLQS*WLESRS
Trigger: GGATCTGCTTTCTAGCCAGCAGCTTTGGAGAGAACC...TTTGGAAGGGTAACTAACATTAATGGCTGGCCTGTGCCTTGAAGCAGAAGGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR TCA 90 bp TTCCCTTCTGCTTCAAGGCACAGGCCAGCCATTAATGTTAGTTACCCTTCCAAATTCCCAGTCACATACTaGAAGAGCAGAGGGAAAGAG +
Preference number: 2 (lower is better)
Translates to: FPSASRHRPAINVSYPSKFPVTY*KSRGKE
Trigger: CTCTTTCCCTCTGCTCTTTCAGTATGTGACTGGGAA...TTTGGAAGGGTAACTAACATTAATGGCTGGCCTGTGCCTTGAAGCAGAAGGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR GCA 90 bp TGTACTCCACAAAAGGCATGGAAATGGTACATTCATATGTGTGCCCATGTCTCCACCAGACTCAGGCTGTaGCATGAGAAGAGCATTCCA +
Preference number: 2 (lower is better)
Translates to: CTPQKAWKWYIHMCAHVSTRLRL*HEKSIP
Trigger: TGGAATGCTCTTCTCATGGCACAGCCTGAGTCTGGT...GGAGACATGGGCACACATATGAATGTACCATTTCCATGCCTTTTGTGGAGTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR CCA 90 bp TGCAGTAAAAAGGAGATTTCTATCTCCAGAGTTGATCGACTAGATCTGGTTACTATGCCAGGTTCTCCCTaGGGTGTCCTGAGCTGTGTG +
Preference number: 2 (lower is better)
Translates to: CSKKEISISRVDRLDLVTMPGSP*GVLSCV
Trigger: CACACAGCTCAGGACACCCCAGGGAGAACCTGGCAT...AGTAACCAGATCTAGTCGATCAACTCTGGAGATAGAAATCTCCTTTTTACTGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR GCA 90 bp TTCTGGCTCAGAGTGCTCAGTAAACATCTGCTGAGAGGCAGGAGGACTCTTAGGTTTGAAATGGAAAACTaGATTGTTGCTCTCTGTGTG +
Preference number: 2 (lower is better)
Translates to: FWLRVLSKHLLRGRRTLRFEMEN*IVALCV
Trigger: CACACAGAGAGCAACAATGCAGTTTTCCATTTCAAA...CCTAAGAGTCCTCCTGCCTCTCAGCAGATGTTTACTGAGCACTCTGAGCCAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR CCA 90 bp TGTACTCCACAAAAGGCATGGAAATGGTACATTCATATGTGTGCCCATGTCTCCGACTGCTGGGAGTATTaGTGTTTCTTAGTCTGGGTC +
Preference number: 2 (lower is better)
Translates to: CTPQKAWKWYIHMCAHVSDCWEY*CFLVWV
Trigger: GACCCAGACTAAGAAACACCAATACTCCCAGCAGTC...GGAGACATGGGCACACATATGAATGTACCATTTCCATGCCTTTTGTGGAGTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR CCA 90 bp AACTCATCAGAGTTTCAAAGCAATAGGTGCCATTGGGAAATTCAGGTTGCATCATTGCTTAGCTCTAAATaGGCAGGAGACGGAGGTCTG +
Preference number: 2 (lower is better)
Translates to: NSSEFQSNRCHWEIQVASLLSSK*AGDGGL
Trigger: CAGACCTCCGTCTCCTGCCCATTTAGAGCTAAGCAA...TGATGCAACCTGAATTTCCCAATGGCACCTATTGCTTTGAAACTCTGATGAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR CCA 90 bp TTGCTTCTGAAGGTAGCTTCCCAGTCACATACTGAAAGAGCAGAGGGAAAGAGTGGGTGCTTTGTCCAATaGCTACTAATAAGGATACCA +
Preference number: 2 (lower is better)
Translates to: LLLKVASQSHTERAEGKSGCFVQ*LLIRIP
Trigger: TGGTATCCTTATTAGTAGCCATTGGACAAAGCACCC...ACTCTTTCCCTCTGCTCTTTCAGTATGTGACTGGGAAGCTACCTTCAGAAGCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR CCA 90 bp ACGTGGATTTATTTACCCAGTCATGAAGACCATGCTTCCCAATGCTGGATACAGGGGTGCTTTGTCCAATaGCTACTAATAAGGATACCA +
Preference number: 2 (lower is better)
Translates to: TWIYLPSHEDHASQCWIQGCFVQ*LLIRIP
Trigger: TGGTATCCTTATTAGTAGCCATTGGACAAAGCACCC...CTGTATCCAGCATTGGGAAGCATGGTCTTCATGACTGGGTAAATAAATCCACGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR CCA 90 bp ATTGTTGCTCTCTGTGTGCTGGGAAAACAGACTCAGGACTATTGTAGGTCTGAGTTGTATGCATCTCAGTaGCAGCAATATTGTCTCTGT +
Preference number: 2 (lower is better)
Translates to: IVALCVLGKQTQDYCRSELYASQ*QQYCLC
Trigger: ACAGAGACAATATTGCTGCCACTGAGATGCATACAA...CTCAGACCTACAATAGTCCTGAGTCTGTTTTCCCAGCACACAGAGAGCAACAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR GCA 90 bp ACGTGGATTTATTTACCCAGTCATGAAGACCATGCTTCCCAATGCTGGATACAGGACAATGTGGTAATTTaGTTAGCTCTAAATGGGCAG +
Preference number: 2 (lower is better)
Translates to: TWIYLPSHEDHASQCWIQDNVVI*LALNGQ
Trigger: CTGCCCATTTAGAGCTAAGCAAATTACCACATTGTC...CTGTATCCAGCATTGGGAAGCATGGTCTTCATGACTGGGTAAATAAATCCACGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR GCA 90 bp ACGTGGATTTATTTACCCAGTCATGAAGACCATGCTTCCCAATGCTGGATACAGCTGAAGAAATTAGGATaGCTTGAAGAGAACACACAG +
Preference number: 2 (lower is better)
Translates to: TWIYLPSHEDHASQCWIQLKKLG*LEENTQ
Trigger: CTGTGTGTTCTCTTCAAGGCATCCTAATTTCTTCAG...CTGTATCCAGCATTGGGAAGCATGGTCTTCATGACTGGGTAAATAAATCCACGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR GCA 90 bp ATTGTTGCTCTCTGTGTGCTGGGAAAACAGACTCAGGACTATTGTAGGTCTGAGAATATATATCTTTCATaGCATTGGGTTGAGGCACCT +
Preference number: 2 (lower is better)
Translates to: IVALCVLGKQTQDYCRSENIYLS*HWVEAP
Trigger: AGGTGCCTCAACCCAATGGCATGAAAGATATATATT...CTCAGACCTACAATAGTCCTGAGTCTGTTTTCCCAGCACACAGAGAGCAACAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR CCA 90 bp TTCCCTTCTGCTTCAAGGCACAGGCCAGCCATTAATGTTAGTTACCCTTCCAAAAGGGTCTGGAGAGAATaGTGTTTTAAACACTTTAGA +
Preference number: 2 (lower is better)
Translates to: FPSASRHRPAINVSYPSKRVWRE*CFKHFR
Trigger: TCTAAAGTGTTTAAAACACCATTCTCTCCAGACCCT...TTTGGAAGGGTAACTAACATTAATGGCTGGCCTGTGCCTTGAAGCAGAAGGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CAA 90 bp GGGAGAGAGAAACTACCCTCTGTCAAAGAACCCTCATGCTGGCTATaGGGTCCCAATTTTGTTAAAATTGAAGTTACTGCTAAATATGCT +
Preference number: 2 (lower is better)
Translates to: GREKLPSVKEPSCWL*GPNFVKIEVTAKYA
Trigger: AGCATATTTAGCAGTAACTTCAATTTTAACAAAATTGGGACCCAATAGCCAGCATGAGGGTTCTTTGACAGAGGGTAGTTTCTCTCTCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR CCA 90 bp CCACAAAAGGCATGGAAATGGTACATTCATATGTGTGCCCATGTCTCCTGCAAGAAGTCTTTACAGTTGTaGATGTTTGGCCTTAATACA +
Preference number: 2 (lower is better)
Translates to: PQKAWKWYIHMCAHVSCKKSLQL*MFGLNT
Trigger: TGTATTAAGGCCAAACATCCACAACTGTAAAGACTT...CTTGCAGGAGACATGGGCACACATATGAATGTACCATTTCCATGCCTTTTGTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR GCA 90 bp AACTCATCAGAGTTTCAAAGCAATAGGTGCCATTGGGAAATTCAGGTTGCATCATATTCGGAAACGGATTaGCTTGCTGTCTTAGTCATT +
Preference number: 2 (lower is better)
Translates to: NSSEFQSNRCHWEIQVASYSETD*LAVLVI
Trigger: AATGACTAAGACAGCAAGGCAATCCGTTTCCGAATA...TGATGCAACCTGAATTTCCCAATGGCACCTATTGCTTTGAAACTCTGATGAGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR GCA 90 bp TGCAGTAAAAAGGAGATTTCTATCTCCAGAGTTGATCGACTAGATCTGGTTACTGACAATGTGGTAATTTaGTTAGCTCTAAATGGGCAG +
Preference number: 2 (lower is better)
Translates to: CSKKEISISRVDRLDLVTDNVVI*LALNGQ
Trigger: CTGCCCATTTAGAGCTAAGCAAATTACCACATTGTC...AGTAACCAGATCTAGTCGATCAACTCTGGAGATAGAAATCTCCTTTTTACTGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CAA 90 bp CATATCAGTTACAGAAATTTTGTATGCATCTCAGTGGCAGCAATATaGTCTCTGTGCCACAAAAAGAGGCATGTCATAAGAGTTATTCTT +
Preference number: 2 (lower is better)
Translates to: HISYRNFVCISVAAI*SLCHKKRHVIRVIL
Trigger: AAGAATAACTCTTATGACATGCCTCTTTTTGTGGCACAGAGACAATATTGCTGCCACTGAGATGCATACAAAATTTCTGTAACTGATATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CAA 90 bp TTGGCCTTAATACAACTACTGAATGACATATCAGTTACAGAAATTTaGTATGCATCTCAGTGGCAGCAATATTGTCTCTGTGCCACAAAA +
Preference number: 2 (lower is better)
Translates to: LALIQLLNDISVTEI*YASQWQQYCLCATK
Trigger: TTTTGTGGCACAGAGACAATATTGCTGCCACTGAGATGCATACAAAATTTCTGTAACTGATATGTCATTCAGTAGTTGTATTAAGGCCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 72 bp GTGGCTGGGCGCCCTACTGCCCAGCCATCGTCCTCCTaGTTGTCGGGGTGCTTCTGGCTCAGAGTGCTCAGT +
Preference number: 3 (lower is better)
Translates to: VAGRPTAQPSSS*LSGCFWLRVLS
Trigger: ACTGAGCACTCTGAGCCAGAAGCACCCCGACAACCAGGAGGACGATGGCTGGGCAGTAGGGCGCCCAGCCAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 72 bp ACAAAGCGGGCCTCAGAGGAAAGAGCTGCAAGTGGCTaGGCGCCCTACTGCCCAGCCATCGTCCTCCTGGTT +
Preference number: 3 (lower is better)
Translates to: TKRASEERAASG*APYCPAIVLLV
Trigger: AACCAGGAGGACGATGGCTGGGCAGTAGGGCGCCCAGCCACTTGCAGCTCTTTCCTCTGAGGCCCGCTTTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 72 bp AAACACAAAGCGGGCCTCAGAGGAAAGAGCTGCAAGTaGCTGGGCGCCCTACTGCCCAGCCATCGTCCTCCT +
Preference number: 3 (lower is better)
Translates to: KHKAGLRGKSCK*LGALLPSHRPP
Trigger: AGGAGGACGATGGCTGGGCAGTAGGGCGCCCAGCCACTTGCAGCTCTTTCCTCTGAGGCCCGCTTTGTGTTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 72 bp GCCCAGCCATCGTCCTCCTGGTTGTCGGGGTGCTTCTaGCTCAGAGTGCTCAGTAAACATCTGCTGAGAGGC +
Preference number: 3 (lower is better)
Translates to: AQPSSSWLSGCF*LRVLSKHLLRG
Trigger: GCCTCTCAGCAGATGTTTACTGAGCACTCTGAGCCAGAAGCACCCCGACAACCAGGAGGACGATGGCTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR GCA 72 bp CCCGATGTAAACAACATGCCATGCCAGCTAGCACTCTaGAAAGGGCAGCCAGAGAGAAGCCCCTGCCAGCTC +
Preference number: 3 (lower is better)
Translates to: PDVNNMPCQLAL*KGQPERSPCQL
Trigger: GAGCTGGCAGGGGCTTCTCTCTGGCTGCCCTTTGCAGAGTGCTAGCTGGCATGGCATGTTGTTTACATCGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR GCA 72 bp CCTACTGCCCAGCCATCGTCCTCCTGGTTGTCGGGGTaGTTCTGGCTCAGAGTGCTCAGTAAACATCTGCTG +
Preference number: 3 (lower is better)
Translates to: PTAQPSSSWLSG*FWLRVLSKHLL
Trigger: CAGCAGATGTTTACTGAGCACTCTGAGCCAGAAGCACCCCGACAACCAGGAGGACGATGGCTGGGCAGTAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 72 bp GCCAGGTTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTaGTACCATAACAGCCTTGGGAAGGTGGGGAGCTAT +
Preference number: 3 (lower is better)
Translates to: ARFSLGCPELCV*YHNSLGKVGSY
Trigger: ATAGCTCCCCACCTTCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAACCTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CCA 72 bp TTCAGGGTGCAGGACCTGAAGGCCATTAGCATGCAGTaGCCCAAGACCTTCCTGAAGGCCCTGGCTACAACC +
Preference number: 3 (lower is better)
Translates to: FRVQDLKAISMQ*PKTFLKALATT
Trigger: GGTTGTAGCCAGGGCCTTCAGGAAGGTCTTGGGCCACTGCATGCTAATGGCCTTCAGGTCCTGCACCCTGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR TCA 72 bp AAGCACGAGGAGCCTTCCTTCTGTAGAAAAGCCCTGTaGTGGTACAAATGCCTGCTACGGCGCCCTGCGCAG +
Preference number: 3 (lower is better)
Translates to: KHEEPSFCRKAL*WYKCLLRRPAQ
Trigger: CTGCGCAGGGCGCCGTAGCAGGCATTTGTACCATCACAGGGCTTTTCTACAGAAGGAAGGCTCCTCGTGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR TCA 72 bp CACTCCCACCTGGAGGAGGAGCTCATACGCTTCAGCTaGGGCTTTGTGTGTCTCACAAGACAACGCCCACAC +
Preference number: 3 (lower is better)
Translates to: HSHLEEELIRFS*GFVCLTRQRPH
Trigger: GTGTGGGCGTTGTCTTGTGAGACACACAAAGCCTCAGCTGAAGCGTATGAGCTCCTCCTCCAGGTGGGAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR GCA 72 bp GAATTAAAACACAAAGCGGGCCTCAGAGGAAAGAGCTaGAAGTGGCTGGGCGCCCTACTGCCCAGCCATCGT +
Preference number: 3 (lower is better)
Translates to: ELKHKAGLRGKS*KWLGALLPSHR
Trigger: ACGATGGCTGGGCAGTAGGGCGCCCAGCCACTTGCAGCTCTTTCCTCTGAGGCCCGCTTTGTGTTTTAATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR TCA 72 bp CCTACTTGTTGTCTGAGAGCTTCAGGGTGCAGGACCTaGAGGCCATTAGCATGCAGTGGCCCAAGACCTTCC +
Preference number: 3 (lower is better)
Translates to: PTCCLRASGCRT*RPLACSGPRPS
Trigger: GGAAGGTCTTGGGCCACTGCATGCTAATGGCCTTCAGGTCCTGCACCCTGAAGCTCTCAGACAACAAGTAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR GCA 72 bp CCTCAGCCGTCCTTGCTTCCTAGAGGTGCTCATGGCTaGTCAGCTCAAGGTCAGATGTTTGCCCAGATTAGG +
Preference number: 3 (lower is better)
Translates to: PQPSLLPRGAHG*SAQGQMFAQIR
Trigger: CCTAATCTGGGCAAACATCTGACCTTGAGCTGAGCAGCCATGAGCACCTCTAGGAAGCAAGGACGGCTGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR-3UTR CAA 90 bp AGAGGAAAGAGCTGCAAGTGGCTGGGCGCCCTACTGCCCAGCCATCGTCCTCCTACCAAAGCTCTTCTGTaGTCTTTGTGTGTTTCTAGC +
Preference number: 3 (lower is better)
Translates to: RGKSCKWLGALLPSHRPPTKALL*SLCVSS
Trigger: GCTAGAAACACACAAAGACAACAGAAGAGCTTTGGT...AGGAGGACGATGGCTGGGCAGTAGGGCGCCCAGCCACTTGCAGCTCTTTCCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 72 bp TCTTTGTGTGTTTCTAGCCTCCCCATCACTCCCACCTaGAGGAGGAGCTCATACGCTTCAGCTGAGGCTTTG +
Preference number: 3 (lower is better)
Translates to: SLCVSSLPITPT*RRSSYASAEAL
Trigger: CAAAGCCTCAGCTGAAGCGTATGAGCTCCTCCTCCAGGTGGGAGTGATGGGGAGGCTAGAAACACACAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR CAA 90 bp AAAACACAAAGCGGGCCTCAGAGGAAAGAGCTGCAAGTGGCTGGGCGCCCTACTTGGAAAACTGCATTGTaGCTCTCTGTGTGCTGGGAA +
Preference number: 3 (lower is better)
Translates to: KTQSGPQRKELQVAGRPTWKTAL*LSVCWE
Trigger: TTCCCAGCACACAGAGAGCAACAATGCAGTTTTCCA...AGTAGGGCGCCCAGCCACTTGCAGCTCTTTCCTCTGAGGCCCGCTTTGTGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR GCA 72 bp AGCGCTCTCCGTAGACGAAGCCCTGCAGAAAGGCTGTaGCGGTTAACTGAGATGTACTATCAGTCAGAACAG +
Preference number: 3 (lower is better)
Translates to: SALRRRSPAERL*RLTEMYYQSEQ
Trigger: CTGTTCTGACTGATAGTACATCTCAGTTAACCGGCACAGCCTTTCTGCAGGGCTTCGTCTACGGAGAGCGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR CAA 90 bp TCGGCATCCTTAGTGGACACTGGGGAGATGGCAGAAGATCATGGCTCCAACTTCCTCAAGGTCAGATGTTaGCCCAGATTAGGATTCCAG +
Preference number: 3 (lower is better)
Translates to: SASLVDTGEMAEDHGSNFLKVRC*PRLGFQ
Trigger: CTGGAATCCTAATCTGGGCAAACATCTGACCTTGAG...GAAGTTGGAGCCATGATCTTCTGCCATCTCCCCAGTGTCCACTAAGGATGCCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR TCA 72 bp CAGCCTCTTTGTAGCACCATGGGGATCACAGGCTCCTaGGAACATTCACACAGATCAGGGTTTGGCAGTTCT +
Preference number: 3 (lower is better)
Translates to: QPLCSTMGITGS*EHSHRSGFGSS
Trigger: AGAACTGCCAAACCCTGATCTGTGTGAATGTTCTCAGGAGCCTGTGATCCCCATGGTGCTACAAAGAGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR GCA 72 bp AGAAACACCACTGTTCCCGATGTAAACAACATGCCATaGCAGCTAGCACTCTGCAAAGGGCAGCCAGAGAGA +
Preference number: 3 (lower is better)
Translates to: RNTTVPDVNNMP*QLALCKGQPER
Trigger: TCTCTCTGGCTGCCCTTTGCAGAGTGCTAGCTGGCATGGCATGTTGTTTACATCGGGAACAGTGGTGTTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR GCA 72 bp AACAAGGCGGTGGGAGGGAGGTCACTGTGGTTGATATaGTGTGGGATAGATTCAAGGTGTGTGTGTGTGTGT +
Preference number: 3 (lower is better)
Translates to: NKAVGGRSLWLI*CGIDSRCVCVC
Trigger: ACACACACACACACACCTTGAATCTATCCCACAGCATATCAACCACAGTGACCTCCCTCCCACCGCCTTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR CAA 90 bp AAAACACAAAGCGGGCCTCAGAGGAAAGAGCTGCAAGTGGCTGGGCGCCCTACTATGCTGGATACAGTTTaGGATTCTAGAAAGCAAACC +
Preference number: 3 (lower is better)
Translates to: KTQSGPQRKELQVAGRPTMLDTV*DSRKQT
Trigger: GGTTTGCTTTCTAGAATCCAAAACTGTATCCAGCAT...AGTAGGGCGCCCAGCCACTTGCAGCTCTTTCCTCTGAGGCCCGCTTTGTGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR TCA 72 bp GTGGATCTGAGCATGGGGCTCACAGCTCCCAGAGCATaGCTTAACTCATCAGAGTTTCAAAGCAATAGGTGC +
Preference number: 3 (lower is better)
Translates to: VDLSMGLTAPRA*LNSSEFQSNRC
Trigger: GCACCTATTGCTTTGAAACTCTGATGAGTTAAGTCATGCTCTGGGAGCTGTGAGCCCCATGCTCAGATCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR TCA 72 bp AGGGGCCAAATCGTTTCCCAGGTTGAAAATGATTCCTaGGTGTTAGGGCCTCCTGGTGATCTCTGTCCATAC +
Preference number: 3 (lower is better)
Translates to: RGQIVSQVENDS*VLGPPGDLCPY
Trigger: GTATGGACAGAGATCACCAGGAGGCCCTAACACTCAGGAATCATTTTCAACCTGGGAAACGATTTGGCCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR GCA 72 bp AGGTGTGTGTGTGTGTGTGTGCTGGAGGTTGCTCTGTaGTATGGTCCTGGTGAAGGTTGGACTATACTGTTT +
Preference number: 3 (lower is better)
Translates to: RCVCVCVLEVAL*YGPGEGWTILF
Trigger: AAACAGTATAGTCCAACCTTCACCAGGACCATAGCACAGAGCAACCTCCAGCACACACACACACACACACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 72 bp GAAAGCAAACAAAGAAAACCCATGCCAGGTTCTCCCTaGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACA +
Preference number: 3 (lower is better)
Translates to: ESKQRKPMPGSP*GVLSCVSGTIT
Trigger: TGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAACCTGGCATGGGTTTTCTTTGTTTGCTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CCA 72 bp ATCCTTAGTGGACACTGGGGAGATGGCAGAAGATCATaGCTCCAACTTCCTCTAAACCACACTCTCTCTGCA +
Preference number: 3 (lower is better)
Translates to: ILSGHWGDGRRS*LQLPLNHTLSA
Trigger: TGCAGAGAGAGTGTGGTTTAGAGGAAGTTGGAGCCATGATCTTCTGCCATCTCCCCAGTGTCCACTAAGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR CAA 90 bp GCCATTGGGTTGAGGCACCTTGAAGATTTGCTTCTGAAGGTAGCTTCCCAGTCAGAAAGCAGATCCTACTaGTTGTCTGAGAGCTTCAGG +
Preference number: 3 (lower is better)
Translates to: AIGLRHLEDLLLKVASQSESRSY*LSESFR
Trigger: CCTGAAGCTCTCAGACAACAAGTAGGATCTGCTTTC...TGACTGGGAAGCTACCTTCAGAAGCAAATCTTCAAGGTGCCTCAACCCAATGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR TCA 72 bp CTCATGAGATTTGTGTGCTTTCTGATCACTGCCTTCTaGCATAGCAGCACACAGGCCAGTGAGCATAAACCA +
Preference number: 3 (lower is better)
Translates to: LMRFVCFLITAF*HSSTQASEHKP
Trigger: TGGTTTATGCTCACTGGCCTGTGTGCTGCTATGTCAGAAGGCAGTGATCAGAAAGCACACAAATCTCATGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 72 bp AGAGAACACACAGGTAACTTTGGGTGCTTTGTCCAATaGCTACTAATAAGGATACCAGACTCAGGCTGTGCC +
Preference number: 3 (lower is better)
Translates to: REHTGNFGCFVQ*LLIRIPDSGCA
Trigger: GGCACAGCCTGAGTCTGGTATCCTTATTAGTAGCCATTGGACAAAGCACCCAAAGTTACCTGTGTGTTCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR GCA 72 bp CCAATGGCTACTAATAAGGATACCAGACTCAGGCTGTaGCATGAGAAGAGCATTCCACGTGGTTATAGCTTT +
Preference number: 3 (lower is better)
Translates to: PMATNKDTRLRL*HEKSIPRGYSF
Trigger: AAAGCTATAACCACGTGGAATGCTCTTCTCATGGCACAGCCTGAGTCTGGTATCCTTATTAGTAGCCATTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR GCA 72 bp GGAAGACCGAGTCTCTCTATGCTGAAGAAATTAGGATaGCTTGAAGAGAACACACAGGTAACTTTGGGTGCT +
Preference number: 3 (lower is better)
Translates to: GRPSLSMLKKLG*LEENTQVTLGA
Trigger: AGCACCCAAAGTTACCTGTGTGTTCTCTTCAAGGCATCCTAATTTCTTCAGCATAGAGAGACTCGGTCTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CCA 72 bp AGATGTTTGCCCAGATTAGGATTCCAGTCTCCATCCTaGTATAACCACACCCCAAACCTTCTTTTCAGTACC +
Preference number: 3 (lower is better)
Translates to: RCLPRLGFQSPS*YNHTPNLLFST
Trigger: GGTACTGAAAAGAAGGTTTGGGGTGTGGTTATACCAGGATGGAGACTGGAATCCTAATCTGGGCAAACATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CCA 72 bp CTTGAAGTAGTAACAAAGGTAGAGAGTTGGCTCTCTTaGATGACAGAGGTTTTGTCATGGGTCTGGTCAGAG +
Preference number: 3 (lower is better)
Translates to: LEVVTKVESWLS*MTEVLSWVWSE
Trigger: CTCTGACCAGACCCATGACAAAACCTCTGTCATCCAAGAGAGCCAACTCTCTACCTTTGTTACTACTTCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR-3UTR CAA 90 bp AACTCATCAGAGTTTCAAAGCAATAGGTGCCATTGGGAAATTCAGGTTGCATCAGCTCTTCTGTTGTCTTaGTGTGTTTCTAGCCTCCCC +
Preference number: 3 (lower is better)
Translates to: NSSEFQSNRCHWEIQVASALLLS*CVSSLP
Trigger: GGGGAGGCTAGAAACACACAAAGACAACAGAAGAGC...TGATGCAACCTGAATTTCCCAATGGCACCTATTGCTTTGAAACTCTGATGAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR TCA 72 bp CTTGGGAAGGTGGGGAGCTATTTTCCGATAAGGCCTTaGATAGAAAGTAAACATCTCATCTTAGGTCCCATC +
Preference number: 3 (lower is better)
Translates to: LGKVGSYFPIRP*IESKHLILGPI
Trigger: GATGGGACCTAAGATGAGATGTTTACTTTCTATTCAAGGCCTTATCGGAAAATAGCTCCCCACCTTCCCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR TCA 72 bp ACACTCACACAGAGCGCAAACTCGGCATGCATATTTTaGAATGGAAAACTGCATTGTTGCTCTCTGTGTGCT +
Preference number: 3 (lower is better)
Translates to: TLTQSANSACIF*NGKLHCCSLCA
Trigger: AGCACACAGAGAGCAACAATGCAGTTTTCCATTTCAAAATATGCATGCCGAGTTTGCGCTCTGTGTGAGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR GCA 72 bp TCATTGTATTACAGTCCAGAAGACAATGTGGTAATTTaGTTAGCTCTAAATGGGCAGGAGACGGAGGTCTGC +
Preference number: 3 (lower is better)
Translates to: SLYYSPEDNVVI*LALNGQETEVC
Trigger: GCAGACCTCCGTCTCCTGCCCATTTAGAGCTAAGCAAATTACCACATTGTCTTCTGGACTGTAATACAATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR TCA 72 bp TCTTGGAGAATTTCAGATCACGCAGAACATGATGTATaGTATAGAAAGGTAGGCAGGTGGTGGGGCTTTCAA +
Preference number: 3 (lower is better)
Translates to: SWRISDHAEHDV*YRKVGRWWGFQ
Trigger: TTGAAAGCCCCACCACCTGCCTACCTTTCTATATCATACATCATGTTCTGCGTGATCTGAAATTCTCCAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR GCA 72 bp GGGAGAGAGAAACTACCCTCTGTCAAAGAACCCTCATaGTGGCTATTGGGTCCCAATTTTGTTAAAATTGAA +
Preference number: 3 (lower is better)
Translates to: GREKLPSVKEPS*WLLGPNFVKIE
Trigger: TTCAATTTTAACAAAATTGGGACCCAATAGCCAGCATGAGGGTTCTTTGACAGAGGGTAGTTTCTCTCTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 72 bp TTGAAATGGAAAACTGCATTGTTGCTCTCTGTGTGCTaGGAAAACAGACTCAGGACTATTGTAGGTCTGAGA +
Preference number: 3 (lower is better)
Translates to: LKWKTALLLSVC*ENRLRTIVGLR
Trigger: TCTCAGACCTACAATAGTCCTGAGTCTGTTTTCCCAGCACACAGAGAGCAACAATGCAGTTTTCCATTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR TCA 72 bp AATATATATCTTTCATGCCATTGGGTTGAGGCACCTTaGAGATTTGCTTCTGAAGGTAGCTTCCCAGTCACA +
Preference number: 3 (lower is better)
Translates to: NIYLSCHWVEAP*RFASEGSFPVT
Trigger: TGTGACTGGGAAGCTACCTTCAGAAGCAAATCTTCAAGGTGCCTCAACCCAATGGCATGAAAGATATATATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CCA 72 bp TGTTTAAAAACCAGTTCTTGGGACTGCTGGGAGTATTaGTGTTTCTTAGTCTGGGTCATTTGTGTATGGCTT +
Preference number: 3 (lower is better)
Translates to: CLKTSSWDCWEY*CFLVWVICVWL
Trigger: AAGCCATACACAAATGACCCAGACTAAGAAACACCAATACTCCCAGCAGTCCCAAGAACTGGTTTTTAAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 72 bp TGTTTATATGTCTGTACTCCACAAAAGGCATGGAAATaGTACATTCATATGTGTGCCCATGTCTCCTGCAAG +
Preference number: 3 (lower is better)
Translates to: CLYVCTPQKAWK*YIHMCAHVSCK
Trigger: CTTGCAGGAGACATGGGCACACATATGAATGTACCATTTCCATGCCTTTTGTGGAGTACAGACATATAAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR TCA 72 bp ACTCGGAGGCTGTGTTTACCTGTAGATTCCCCCATATaGGAAATGCGTACAAAAATAACAGCATGTAACATA +
Preference number: 3 (lower is better)
Translates to: TRRLCLPVDSPI*EMRTKITACNI
Trigger: TATGTTACATGCTGTTATTTTTGTACGCATTTCTCATATGGGGGAATCTACAGGTAAACACAGCCTCCGAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 72 bp AACTACCCTCTGTCAAAGAACCCTCATGCTGGCTATTaGGTCCCAATTTTGTTAAAATTGAAGTTACTGCTA +
Preference number: 3 (lower is better)
Translates to: NYPLSKNPHAGY*VPILLKLKLLL
Trigger: TAGCAGTAACTTCAATTTTAACAAAATTGGGACCCAATAGCCAGCATGAGGGTTCTTTGACAGAGGGTAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 72 bp AGAGAGAAACTACCCTCTGTCAAAGAACCCTCATGCTaGCTATTGGGTCCCAATTTTGTTAAAATTGAAGTT +
Preference number: 3 (lower is better)
Translates to: REKLPSVKEPSC*LLGPNFVKIEV
Trigger: AACTTCAATTTTAACAAAATTGGGACCCAATAGCCAGCATGAGGGTTCTTTGACAGAGGGTAGTTTCTCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR GCA 72 bp ATTTATTTACCCAGTCATGAAGACCATGCTTCCCAATaGTGGATACAGTTTTGGATTCTAGAAAGCAAACCA +
Preference number: 3 (lower is better)
Translates to: IYLPSHEDHASQ*WIQFWILESKP
Trigger: TGGTTTGCTTTCTAGAATCCAAAACTGTATCCAGCATTGGGAAGCATGGTCTTCATGACTGGGTAAATAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR GCA 72 bp TTTGTATGCATCTCAGTGGCAGCAATATTGTCTCTGTaGCACAAAAAGAGGCATGTCATAAGAGTTATTCTT +
Preference number: 3 (lower is better)
Translates to: FVCISVAAILSL*HKKRHVIRVIL
Trigger: AAGAATAACTCTTATGACATGCCTCTTTTTGTGGCACAGAGACAATATTGCTGCCACTGAGATGCATACAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CCA 72 bp CATGAAGACCATGCTTCCCAATGCTGGATACAGTTTTaGATTCTAGAAAGCAAACCAAATTCCTTATCTGTA +
Preference number: 3 (lower is better)
Translates to: HEDHASQCWIQF*ILESKPNSLSV
Trigger: TACAGATAAGGAATTTGGTTTGCTTTCTAGAATCCAAAACTGTATCCAGCATTGGGAAGCATGGTCTTCATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CCA 72 bp GAATGGTGTTTTAAACACTTTAGAAACTCGGAAAGTTaGTACAACAACAACTCCAATGGAGCTGAAGATAGT +
Preference number: 3 (lower is better)
Translates to: EWCFKHFRNSES*YNNNSNGAEDS
Trigger: ACTATCTTCAGCTCCATTGGAGTTGTTGTTGTACCAACTTTCCGAGTTTCTAAAGTGTTTAAAACACCATTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CCA 72 bp TATTTATGTTTATATGTCTGTACTCCACAAAAGGCATaGAAATGGTACATTCATATGTGTGCCCATGTCTCC +
Preference number: 3 (lower is better)
Translates to: YLCLYVCTPQKA*KWYIHMCAHVS
Trigger: GGAGACATGGGCACACATATGAATGTACCATTTCCATGCCTTTTGTGGAGTACAGACATATAAACATAAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR TCA 72 bp ACCTCTAGTATGTATAAGCATGAGATGGACTGCAAATaGACTGTATTAGTTTTGACGTCTTGTCATTTGAAG +
Preference number: 3 (lower is better)
Translates to: TSSMYKHEMDCK*TVLVLTSCHLK
Trigger: CTTCAAATGACAAGACGTCAAAACTAATACAGTTCATTTGCAGTCCATCTCATGCTTATACATACTAGAGGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR TCA 72 bp AAACTTACTACTACTCCTAATGTAAGCGTGTGTGCGTaGATGGAAGTATTTATGTTTATATGTCTGTACTCC +
Preference number: 3 (lower is better)
Translates to: KLTTTPNVSVCA*MEVFMFICLYS
Trigger: GGAGTACAGACATATAAACATAAATACTTCCATTCACGCACACACGCTTACATTAGGAGTAGTAGTAAGTTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR GCA 90 bp AGAGGAAAGAGCTGCAAGTGGCTGGGCGCCCTACTGCCCAGCCATCGTCCTCCTATGGGGGCTGGGCGGTaGCCAGGTTCCTGCTGCCCT +
Preference number: 4 (lower is better)
Translates to: RGKSCKWLGALLPSHRPPMGAGR*PGSCCP
Trigger: AGGGCAGCAGGAACCTGGGCACCGCCCAGCCCCCAT...AGGAGGACGATGGCTGGGCAGTAGGGCGCCCAGCCACTTGCAGCTCTTTCCTCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp GACCTGAAGGCCATTAGCATGCAGTGGCCCAAGACCTTCCTGAAGGCCCTGGCTTGGCGGGCAGGGGCCTaGCAGGGCCACTGGGTGCAC +
Preference number: 4 (lower is better)
Translates to: DLKAISMQWPKTFLKALAWRAGA*QGHWVH
Trigger: GTGCACCCAGTGGCCCTGCCAGGCCCCTGCCCGCCA...AGCCAGGGCCTTCAGGAAGGTCTTGGGCCACTGCATGCTAATGGCCTTCAGGTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp AGAGGAAAGAGCTGCAAGTGGCTGGGCGCCCTACTGCCCAGCCATCGTCCTCCTAGGTCTGATGGGGGCTaGGCGGTGCCCAGGTTCCTG +
Preference number: 4 (lower is better)
Translates to: RGKSCKWLGALLPSHRPPRSDGG*AVPRFL
Trigger: CAGGAACCTGGGCACCGCCCAGCCCCCATCAGACCT...AGGAGGACGATGGCTGGGCAGTAGGGCGCCCAGCCACTTGCAGCTCTTTCCTCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR GCA 90 bp GTCAGAACAGAGCTAAGCAGTCTGTGGCCAGCTCGGGTTGTGCTGTTGGTTGCCCTGGGCCTGCCTGACTaGAGGACTGGCGGGCAGGGG +
Preference number: 4 (lower is better)
Translates to: VRTELSSLWPARVVLLVALGLPD*RTGGQG
Trigger: CCCCTGCCCGCCAGTCCTGCAGTCAGGCAGGCCCAG...GGCAACCAACAGCACAACCCGAGCTGGCCACAGACTGCTTAGCTCTGTTCTGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR GCA 90 bp GGTTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGACTGGGCCTGCCTGACTaGAGGACTGGCGGGCAGGGG +
Preference number: 4 (lower is better)
Translates to: GSPWGVLSCVSGTITALGLGLPD*RTGGQG
Trigger: CCCCTGCCCGCCAGTCCTGCAGTCAGGCAGGCCCAG...TCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp GGTTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGAGGCAGGGCCACTGGGTaGACGTGGGGTCTGGTGGAG +
Preference number: 4 (lower is better)
Translates to: GSPWGVLSCVSGTITALGGRATG*TWGLVE
Trigger: CTCCACCAGACCCCACGTGCACCCAGTGGCCCTGCC...TCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CAA 72 bp GCTGGGCGCCCTACTGCCCAGCCATCGTCCTCCTGGTaGTCGGGGTGCTTCTGGCTCAGAGTGCTCAGTAAA +
Preference number: 4 (lower is better)
Translates to: AGRPTAQPSSSW*SGCFWLRVLSK
Trigger: TTTACTGAGCACTCTGAGCCAGAAGCACCCCGACAACCAGGAGGACGATGGCTGGGCAGTAGGGCGCCCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR GCA 90 bp CAGAGAGAAGCCCCTGCCAGCTCTCAAAGCAGAGCCTTGTGCAGCACCTCAGCCATGTGCCAAGGTCACTaGGGCACCAAGGGGGCTGTC +
Preference number: 4 (lower is better)
Translates to: QREAPASSQSRALCSTSAMCQGH*GTKGAV
Trigger: GACAGCCCCCTTGGTGCCGCAGTGACCTTGGCACAT...GGCTGAGGTGCTGCACAAGGCTCTGCTTTGAGAGCTGGCAGGGGCTTCTCTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp CTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGAAGGTGGGGGTGGCCCAGCTCATGTaGCAAGGTCACTGCGGCACC +
Preference number: 4 (lower is better)
Translates to: LGCPELCVWYHNSLGKVGVAQLM*QGHCGT
Trigger: GGTGCCGCAGTGACCTTGGCACATGAGCTGGGCCAC...CCCCACCTTCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp CAGAGAGAAGCCCCTGCCAGCTCTCAAAGCAGAGCCTTGTGCAGCACCTCAGCCCATACCCCTCGGCCGTaGCACTGCATGGCACACTTG +
Preference number: 4 (lower is better)
Translates to: QREAPASSQSRALCSTSAHTPRP*HCMAHL
Trigger: CAAGTGTGCCATGCAGTGCCACGGCCGAGGGGTATG...GGCTGAGGTGCTGCACAAGGCTCTGCTTTGAGAGCTGGCAGGGGCTTCTCTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp GGTTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGAGCACGTGGGGTCTGGTaGAGAGGCAGGAGCACTCGC +
Preference number: 4 (lower is better)
Translates to: GSPWGVLSCVSGTITALGARGVW*RGRSTR
Trigger: GCGAGTGCTCCTGCCTCTCCACCAGACCCCACGTGC...TCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp GCCAGGTTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGCCACTGGGTGCACGTaGGGTCTGGTGGAGAGGCAG +
Preference number: 4 (lower is better)
Translates to: ARFSLGCPELCVWYHNSLATGCT*GLVERQ
Trigger: CTGCCTCTCCACCAGACCCCACGTGCACCCAGTGGC...AAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAACCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp GCCAGGTTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTAGGTCTGATGGGGGCTaGGCGGTGCCCAGGTTCCTG +
Preference number: 4 (lower is better)
Translates to: ARFSLGCPELCVWYHNSLRSDGG*AVPRFL
Trigger: CAGGAACCTGGGCACCGCCCAGCCCCCATCAGACCT...AAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAACCTGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp GACCTGAAGGCCATTAGCATGCAGTGGCCCAAGACCTTCCTGAAGGCCCTGGCTCGGCCCCCAAAGGCCTaGTTGACCTCTGGTAGGTTG +
Preference number: 4 (lower is better)
Translates to: DLKAISMQWPKTFLKALARPPKA*LTSGRL
Trigger: CAACCTACCAGAGGTCAAGCAGGCCTTTGGGGGCCG...AGCCAGGGCCTTCAGGAAGGTCTTGGGCCACTGCATGCTAATGGCCTTCAGGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp CTGAAAGAGCAGAGGGAAAGAGTTGCCTGGCTGAGGTTGCCTTTCGTGAGCAACGGCAGGGCCACTGGGTaGACGTGGGGTCTGGTGGAG +
Preference number: 4 (lower is better)
Translates to: LKEQRERVAWLRLPFVSNGRATG*TWGLVE
Trigger: CTCCACCAGACCCCACGTGCACCCAGTGGCCCTGCC...GTTGCTCACGAAAGGCAACCTCAGCCAGGCAACTCTTTCCCTCTGCTCTTTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp CAGAGAGAAGCCCCTGCCAGCTCTCAAAGCAGAGCCTTGTGCAGCACCTCAGCCGAACACCATGGGGAATaGGAACCCCGTGGACGGGTT +
Preference number: 4 (lower is better)
Translates to: QREAPASSQSRALCSTSAEHHGE*EPRGRV
Trigger: AACCCGTCCACGGGGTTCCCATTCCCCATGGTGTTC...GGCTGAGGTGCTGCACAAGGCTCTGCTTTGAGAGCTGGCAGGGGCTTCTCTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR TCA 90 bp GGTTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGAACATTGGCTGGACAGTaGGGGGCAGTCCCTGTGCAG +
Preference number: 4 (lower is better)
Translates to: GSPWGVLSCVSGTITALGTLAGQ*GAVPVQ
Trigger: CTGCACAGGGACTGCCCCTCACTGTCCAGCCAATGT...TCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR TCA 90 bp GCTGGTAAGGCACCATCGGCATCCTTAGTGGACACTGGGGAGATGGCAGAAGATCTGGTCCCCAGAGCGTaGCACACTGCTGCTCATGGG +
Preference number: 4 (lower is better)
Translates to: AGKAPSASLVDTGEMAEDLVPRA*HTAAHG
Trigger: CCCATGAGCAGCAGTGTGTCACGCTCTGGGGACCAG...ATCTTCTGCCATCTCCCCAGTGTCCACTAAGGATGCCGATGGTGCCTTACCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR TCA 90 bp CTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGAAGGTGGGGCGTCGAGGGGCCTGCTaGTGTCCATGTTCTGGCATT +
Preference number: 4 (lower is better)
Translates to: LGCPELCVWYHNSLGKVGRRGAC*CPCSGI
Trigger: AATGCCAGAACATGGACATCAGCAGGCCCCTCGACG...CCCCACCTTCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp CTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGAAGGTGGGGCAGAGCGTGACACACTaGTGCTCATGGGTCTGGCAG +
Preference number: 4 (lower is better)
Translates to: LGCPELCVWYHNSLGKVGQSVTH*CSWVWQ
Trigger: CTGCCAGACCCATGAGCAGCAGTGTGTCACGCTCTG...CCCCACCTTCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp AGAGGAAAGAGCTGCAAGTGGCTGGGCGCCCTACTGCCCAGCCATCGTCCTCCTCATGTAGGTACACATTaGCTGGACAGTGAGGGGCAG +
Preference number: 4 (lower is better)
Translates to: RGKSCKWLGALLPSHRPPHVGTH*LDSEGQ
Trigger: CTGCCCCTCACTGTCCAGCCAATGTGTACCTACATG...AGGAGGACGATGGCTGGGCAGTAGGGCGCCCAGCCACTTGCAGCTCTTTCCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp CAGAGAGAAGCCCCTGCCAGCTCTCAAAGCAGAGCCTTGTGCAGCACCTCAGCCAAGGGTGGAGCCCAGTaGGCTTCACAGTGGCAATTC +
Preference number: 4 (lower is better)
Translates to: QREAPASSQSRALCSTSAKGGAQ*ASQWQF
Trigger: GAATTGCCACTGTGAAGCCCACTGGGCTCCACCCTT...GGCTGAGGTGCTGCACAAGGCTCTGCTTTGAGAGCTGGCAGGGGCTTCTCTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp CTGAAAGAGCAGAGGGAAAGAGTTGCCTGGCTGAGGTTGCCTTTCGTGAGCAACGCACGTGGGGTCTGGTaGAGAGGCAGGAGCACTCGC +
Preference number: 4 (lower is better)
Translates to: LKEQRERVAWLRLPFVSNARGVW*RGRSTR
Trigger: GCGAGTGCTCCTGCCTCTCCACCAGACCCCACGTGC...GTTGCTCACGAAAGGCAACCTCAGCCAGGCAACTCTTTCCCTCTGCTCTTTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR TCA 90 bp GACCTGAAGGCCATTAGCATGCAGTGGCCCAAGACCTTCCTGAAGGCCCTGGCTCATTCCTTTCCAGGCTaGGGATCAGGTCTCGGCTCT +
Preference number: 4 (lower is better)
Translates to: DLKAISMQWPKTFLKALAHSFPG*GSGLGS
Trigger: AGAGCCGAGACCTGATCCTCAGCCTGGAAAGGAATG...AGCCAGGGCCTTCAGGAAGGTCTTGGGCCACTGCATGCTAATGGCCTTCAGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR TCA 90 bp AAAACACAAAGCGGGCCTCAGAGGAAAGAGCTGCAAGTGGCTGGGCGCCCTACTCCGTGGACGGGTTCATaGTGCAGCCTCCTTTCTCTG +
Preference number: 4 (lower is better)
Translates to: KTQSGPQRKELQVAGRPTPWTGS*CSLLSL
Trigger: CAGAGAAAGGAGGCTGCATCATGAACCCGTCCACGG...AGTAGGGCGCCCAGCCACTTGCAGCTCTTTCCTCTGAGGCCCGCTTTGTGTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR TCA 90 bp TTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGAAGACATTGGCTGGACAGTaGGGGGCAGTCCCTGTGCAG +
Preference number: 4 (lower is better)
Translates to: FSLGCPELCVWYHNSLGKTLAGQ*GAVPVQ
Trigger: CTGCACAGGGACTGCCCCTCACTGTCCAGCCAATGT...CTTCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR TCA 90 bp GTCAGAACAGAGCTAAGCAGTCTGTGGCCAGCTCGGGTTGTGCTGTTGGTTGCCGCAGGCAGAGGCTTCTaGGGAGGACTGGGTTTTCGA +
Preference number: 4 (lower is better)
Translates to: VRTELSSLWPARVVLLVAAGRGF*GGLGFR
Trigger: TCGAAAACCCAGTCCTCCTCAGAAGCCTCTGCCTGC...GGCAACCAACAGCACAACCCGAGCTGGCCACAGACTGCTTAGCTCTGTTCTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR TCA 90 bp GGTTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGAGCAGGCAGAGGCTTCTaGGGAGGACTGGGTTTTCGA +
Preference number: 4 (lower is better)
Translates to: GSPWGVLSCVSGTITALGAGRGF*GGLGFR
Trigger: TCGAAAACCCAGTCCTCCTCAGAAGCCTCTGCCTGC...TCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp CTGAAAGAGCAGAGGGAAAGAGTTGCCTGGCTGAGGTTGCCTTTCGTGAGCAACTCACAGCACTGCCCGTaGGCGCACACAGCATCTGGC +
Preference number: 4 (lower is better)
Translates to: LKEQRERVAWLRLPFVSNSQHCP*AHTASG
Trigger: GCCAGATGCTGTGTGCGCGCACGGGCAGTGCTGTGA...GTTGCTCACGAAAGGCAACCTCAGCCAGGCAACTCTTTCCCTCTGCTCTTTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp CAGAGAGAAGCCCCTGCCAGCTCTCAAAGCAGAGCCTTGTGCAGCACCTCAGCCTGGCGAAGGCGCTCTTaGAGTCTTTGCCACAGTTAC +
Preference number: 4 (lower is better)
Translates to: QREAPASSQSRALCSTSAWRRRS*SLCHSY
Trigger: GTAACTGTGGCAAAGACTCCAAGAGCGCCTTCGCCA...GGCTGAGGTGCTGCACAAGGCTCTGCTTTGAGAGCTGGCAGGGGCTTCTCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp GACCTGAAGGCCATTAGCATGCAGTGGCCCAAGACCTTCCTGAAGGCCCTGGCTCTTGTCACAGAAGGGTaGAGCCCAGTGGGCTTCACA +
Preference number: 4 (lower is better)
Translates to: DLKAISMQWPKTFLKALALVTEG*SPVGFT
Trigger: TGTGAAGCCCACTGGGCTCCACCCTTCTGTGACAAG...AGCCAGGGCCTTCAGGAAGGTCTTGGGCCACTGCATGCTAATGGCCTTCAGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR TCA 90 bp GGTTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGAGAAGGTCTGGGTACTTaGTGCTTAGGGGCAGGTCTG +
Preference number: 4 (lower is better)
Translates to: GSPWGVLSCVSGTITALGEGLGT*CLGAGL
Trigger: CAGACCTGCCCCTAAGCATCAAGTACCCAGACCTTC...TCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp AAAACACAAAGCGGGCCTCAGAGGAAAGAGCTGCAAGTGGCTGGGCGCCCTACTCTCTCCAGCTGCAGTTaGACAGTCAGCACGTCTGGA +
Preference number: 4 (lower is better)
Translates to: KTQSGPQRKELQVAGRPTLSSCS*TVSTSG
Trigger: TCCAGACGTGCTGACTGTGCAACTGCAGCTGGAGAG...AGTAGGGCGCCCAGCCACTTGCAGCTCTTTCCTCTGAGGCCCGCTTTGTGTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR GCA 90 bp CAGAGAGAAGCCCCTGCCAGCTCTCAAAGCAGAGCCTTGTGCAGCACCTCAGCCCAAGCAGACACAGGATaGTCACCAGGATTCCTACAG +
Preference number: 4 (lower is better)
Translates to: QREAPASSQSRALCSTSAQADTG*SPGFLQ
Trigger: CTGTAGGAATCCTGGTGAGCATCCTGTGTCTGCTTG...GGCTGAGGTGCTGCACAAGGCTCTGCTTTGAGAGCTGGCAGGGGCTTCTCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp CTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGAAGGTGGGGTGGCATTTCAGCGAGTaGCTGTCCTTGGGGGTATTG +
Preference number: 4 (lower is better)
Translates to: LGCPELCVWYHNSLGKVGWHFSE*LSLGVL
Trigger: CAATACCCCCAAGGACAGGCACTCGCTGAAATGCCA...CCCCACCTTCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp CTGAAAGAGCAGAGGGAAAGAGTTGCCTGGCTGAGGTTGCCTTTCGTGAGCAACGGCCGTGGCACTGCATaGCACACTTGTGAACGCCGA +
Preference number: 4 (lower is better)
Translates to: LKEQRERVAWLRLPFVSNGRGTA*HTCERR
Trigger: TCGGCGTTCACAAGTGTGCCATGCAGTGCCACGGCC...GTTGCTCACGAAAGGCAACCTCAGCCAGGCAACTCTTTCCCTCTGCTCTTTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp GCCATTGGGTTGAGGCACCTTGAAGATTTGCTTCTGAAGGTAGCTTCCCAGTCAGCCACTGGGTGCACGTaGGGTCTGGTGGAGAGGCAG +
Preference number: 4 (lower is better)
Translates to: AIGLRHLEDLLLKVASQSATGCT*GLVERQ
Trigger: CTGCCTCTCCACCAGACCCCACGTGCACCCAGTGGC...TGACTGGGAAGCTACCTTCAGAAGCAAATCTTCAAGGTGCCTCAACCCAATGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp GTCCCATCAAGCAGGGTATTTCAAGTCCTCCAGAAAAACAAAAGCACGAGGAGCGCCTGGCAGGGCCACTaGGTGCACGTGGGGTCTGGT +
Preference number: 4 (lower is better)
Translates to: VPSSRVFQVLQKNKSTRSAWQGH*VHVGSG
Trigger: ACCAGACCCCACGTGCACCCAGTGGCCCTGCCAGGC...GCTCCTCGTGCTTTTGTTTTTCTGGAGGACTTGAAATACCCTGCTTGATGGGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR TCA 90 bp CAGAGAGAAGCCCCTGCCAGCTCTCAAAGCAGAGCCTTGTGCAGCACCTCAGCCCCGTGTGATTTCGAGTaGGAGAGACATCAGTACCAT +
Preference number: 4 (lower is better)
Translates to: QREAPASSQSRALCSTSAPCDFE*ERHQYH
Trigger: ATGGTACTGATGTCTCTCTCACTCGAAATCACACGG...GGCTGAGGTGCTGCACAAGGCTCTGCTTTGAGAGCTGGCAGGGGCTTCTCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR TCA 90 bp CAGAGAGAAGCCCCTGCCAGCTCTCAAAGCAGAGCCTTGTGCAGCACCTCAGCCTGTCTGAATGGTCCATaGCAACTCCTCCAGACTGTT +
Preference number: 4 (lower is better)
Translates to: QREAPASSQSRALCSTSACLNGP*QLLQTV
Trigger: AACAGTCTGGAGGAGTTGTCATGGACCATTCAGACA...GGCTGAGGTGCTGCACAAGGCTCTGCTTTGAGAGCTGGCAGGGGCTTCTCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR TCA 90 bp TTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGAAGGGTTATCTGCTTGCCTaGTGGGACCACTGTCTGTGC +
Preference number: 4 (lower is better)
Translates to: FSLGCPELCVWYHNSLGKGYLLA*WDHCLC
Trigger: GCACAGACAGTGGTCCCATCAGGCAAGCAGATAACC...CTTCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp GCTGGTAAGGCACCATCGGCATCCTTAGTGGACACTGGGGAGATGGCAGAAGATCATGCTCATGATGGGTaGCATGCCGATGGTGGTTCC +
Preference number: 4 (lower is better)
Translates to: AGKAPSASLVDTGEMAEDHAHDG*HADGGS
Trigger: GGAACCACCATCGGCATGGCACCCATCATGAGCATG...ATCTTCTGCCATCTCCCCAGTGTCCACTAAGGATGCCGATGGTGCCTTACCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR GCA 90 bp AGCTGCTGGCTAGAAAGCAGATCCTACTTGTTGTCTGAGAGCTTCAGGGTGCAGATGTGCCAAGGTCACTaGGGCACCAAGGGGGCTGTC +
Preference number: 4 (lower is better)
Translates to: SCWLESRSYLLSESFRVQMCQGH*GTKGAV
Trigger: GACAGCCCCCTTGGTGCCGCAGTGACCTTGGCACAT...CTGCACCCTGAAGCTCTCAGACAACAAGTAGGATCTGCTTTCTAGCCAGCAGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp CTGAAAGAGCAGAGGGAAAGAGTTGCCTGGCTGAGGTTGCCTTTCGTGAGCAACAGTTGCTGGAGCCCCTaGATGCAGTTCCTGGAGGCT +
Preference number: 4 (lower is better)
Translates to: LKEQRERVAWLRLPFVSNSCWSP*MQFLEA
Trigger: AGCCTCCAGGAACTGCATGCAGGGGCTCCAGCAACT...GTTGCTCACGAAAGGCAACCTCAGCCAGGCAACTCTTTCCCTCTGCTCTTTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp AGCTGCTGGCTAGAAAGCAGATCCTACTTGTTGTCTGAGAGCTTCAGGGTGCAGGGAGGTCACAGGAGTTaGTGGAGCCCCTGCATGCAG +
Preference number: 4 (lower is better)
Translates to: SCWLESRSYLLSESFRVQGGHRS*WSPCMQ
Trigger: CTGCATGCAGGGGCTCCAGCAACTCCTGTGACCTCC...CTGCACCCTGAAGCTCTCAGACAACAAGTAGGATCTGCTTTCTAGCCAGCAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp GACCTGAAGGCCATTAGCATGCAGTGGCCCAAGACCTTCCTGAAGGCCCTGGCTCATGGGTCTGGCAGATaGCGTTGTAGCAGTAACCAT +
Preference number: 4 (lower is better)
Translates to: DLKAISMQWPKTFLKALAHGSGR*RCSSNH
Trigger: ATGGTTACTGCTACAACGGCATCTGCCAGACCCATG...AGCCAGGGCCTTCAGGAAGGTCTTGGGCCACTGCATGCTAATGGCCTTCAGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp GTGATGTCATCCCATATGTGTAACCTGGAAACACTCACACAGAGCGCAAACTCGCGAATGCCCTGGGCCTaGCTGACTGCAGGACTGGCG +
Preference number: 4 (lower is better)
Translates to: VMSSHMCNLETLTQSANSRMPWA*LTAGLA
Trigger: CGCCAGTCCTGCAGTCAGGCAGGCCCAGGGCATTCG...CGAGTTTGCGCTCTGTGTGAGTGTTTCCAGGTTACACATATGGGATGACATCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR GCA 90 bp TTCCCTTCTGCTTCAAGGCACAGGCCAGCCATTAATGTTAGTTACCCTTCCAAAATGGGGGCTGGGCGGTaGCCAGGTTCCTGCTGCCCT +
Preference number: 4 (lower is better)
Translates to: FPSASRHRPAINVSYPSKMGAGR*PGSCCP
Trigger: AGGGCAGCAGGAACCTGGGCACCGCCCAGCCCCCAT...TTTGGAAGGGTAACTAACATTAATGGCTGGCCTGTGCCTTGAAGCAGAAGGGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp GGTTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGATGGCGAAGGCGCTCTTaGAGTCTTTGCCACAGTTAC +
Preference number: 4 (lower is better)
Translates to: GSPWGVLSCVSGTITALGWRRRS*SLCHSY
Trigger: GTAACTGTGGCAAAGACTCCAAGAGCGCCTTCGCCA...TCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp TTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGAAGTCACCCAAGTACACATaGGTCCCCCGGCACAGAATC +
Preference number: 4 (lower is better)
Translates to: FSLGCPELCVWYHNSLGKSPKYT*VPRHRI
Trigger: GATTCTGTGCCGGGGGACCCATGTGTACTTGGGTGA...CTTCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR TCA 90 bp GTAATTTGCTTAGCTCTAAATGGGCAGGAGACGGAGGTCTGCAGTGCCCAGGCAGAAGGTCTGGGTACTTaGTGCTTAGGGGCAGGTCTG +
Preference number: 4 (lower is better)
Translates to: VICLALNGQETEVCSAQAEGLGT*CLGAGL
Trigger: CAGACCTGCCCCTAAGCATCAAGTACCCAGACCTTC...TGCCTGGGCACTGCAGACCTCCGTCTCCTGCCCATTTAGAGCTAAGCAAATTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp TTTGGGTGCTTTGTCCAATGGCTACTAATAAGGATACCAGACTCAGGCTGTGCCGTGGCCCAGCTCATGTaGCAAGGTCACTGCGGCACC +
Preference number: 4 (lower is better)
Translates to: FGCFVQWLLIRIPDSGCAVAQLM*QGHCGT
Trigger: GGTGCCGCAGTGACCTTGGCACATGAGCTGGGCCAC...GGCACAGCCTGAGTCTGGTATCCTTATTAGTAGCCATTGGACAAAGCACCCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp GACTGCTGTCATTTACCTTCTGTCGTGAAAGCTAGTCATCCTACGCCCCATCTGGGAGGTCACAGGAGTTaGTGGAGCCCCTGCATGCAG +
Preference number: 4 (lower is better)
Translates to: DCCHLPSVVKASHPTPHLGGHRS*WSPCMQ
Trigger: CTGCATGCAGGGGCTCCAGCAACTCCTGTGACCTCC...CAGATGGGGCGTAGGATGACTAGCTTTCACGACAGAAGGTAAATGACAGCAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp GGTTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGAAATGACAGGTCGGCTTaGACCACCTTGACACTGGAT +
Preference number: 4 (lower is better)
Translates to: GSPWGVLSCVSGTITALGNDRSA*TTLTLD
Trigger: ATCCAGTGTCAAGGTGGTGCAAGCCGACCTGTCATT...TCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp GGTTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGACAAGCAGACACAGGATaGTCACCAGGATTCCTACAG +
Preference number: 4 (lower is better)
Translates to: GSPWGVLSCVSGTITALGQADTG*SPGFLQ
Trigger: CTGTAGGAATCCTGGTGAGCATCCTGTGTCTGCTTG...TCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp GATCTTAAAGCAGTCAGACGAGGTAGAGGACTGCTGTCATTTACCTTCTGTCGTCGAATGCCCTGGGCCTaGCTGACTGCAGGACTGGCG +
Preference number: 4 (lower is better)
Translates to: DLKAVRRGRGLLSFTFCRRMPWA*LTAGLA
Trigger: CGCCAGTCCTGCAGTCAGGCAGGCCCAGGGCATTCG...ACGACAGAAGGTAAATGACAGCAGTCCTCTACCTCGTCTGACTGCTTTAAGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp AGCTGCTGGCTAGAAAGCAGATCCTACTTGTTGTCTGAGAGCTTCAGGGTGCAGGGTCACAGGAGTTGCTaGAGCCCCTGCATGCAGTTC +
Preference number: 4 (lower is better)
Translates to: SCWLESRSYLLSESFRVQGHRSC*SPCMQF
Trigger: GAACTGCATGCAGGGGCTCCAGCAACTCCTGTGACC...CTGCACCCTGAAGCTCTCAGACAACAAGTAGGATCTGCTTTCTAGCCAGCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp GCTGGTAAGGCACCATCGGCATCCTTAGTGGACACTGGGGAGATGGCAGAAGATCCCTGTGCAGAATTCTaGGAGGTCACAGGAGTTGCT +
Preference number: 4 (lower is better)
Translates to: AGKAPSASLVDTGEMAEDPCAEF*EVTGVA
Trigger: AGCAACTCCTGTGACCTCCCAGAATTCTGCACAGGG...ATCTTCTGCCATCTCCCCAGTGTCCACTAAGGATGCCGATGGTGCCTTACCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CAA 72 bp CTCCAAAGCTGCTGGCTAGAAAGCAGATCCTACTTGTaGTCTGAGAGCTTCAGGGTGCAGGACCTGAAGGCC +
Preference number: 4 (lower is better)
Translates to: LQSCWLESRSYL*SESFRVQDLKA
Trigger: GGCCTTCAGGTCCTGCACCCTGAAGCTCTCAGACAACAAGTAGGATCTGCTTTCTAGCCAGCAGCTTTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR TCA 90 bp CAGAAGGGAATTAAAACACAAAGCGGGCCTCAGAGGAAAGAGCTGCAAGTGGCTTCCTGCTGCAGCTGCTaGACACCATGGGGAATGGGA +
Preference number: 4 (lower is better)
Translates to: QKGIKTQSGPQRKELQVASCCSC*TPWGMG
Trigger: TCCCATTCCCCATGGTGTTCAGCAGCTGCAGCAGGA...AGCCACTTGCAGCTCTTTCCTCTGAGGCCCGCTTTGTGTTTTAATTCCCTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR TCA 90 bp TTCCCTTCTGCTTCAAGGCACAGGCCAGCCATTAATGTTAGTTACCCTTCCAAACTGGTCCCCAGAGCGTaGCACACTGCTGCTCATGGG +
Preference number: 4 (lower is better)
Translates to: FPSASRHRPAINVSYPSKLVPRA*HTAAHG
Trigger: CCCATGAGCAGCAGTGTGTCACGCTCTGGGGACCAG...TTTGGAAGGGTAACTAACATTAATGGCTGGCCTGTGCCTTGAAGCAGAAGGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR TCA 90 bp AGCTGCTGGCTAGAAAGCAGATCCTACTTGTTGTCTGAGAGCTTCAGGGTGCAGCGGCTTGCACCACCTTaGCACTGGATTTTCCCACAC +
Preference number: 4 (lower is better)
Translates to: SCWLESRSYLLSESFRVQRLAPP*HWIFPH
Trigger: GTGTGGGAAAATCCAGTGTCAAGGTGGTGCAAGCCG...CTGCACCCTGAAGCTCTCAGACAACAAGTAGGATCTGCTTTCTAGCCAGCAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR TCA 90 bp AGCTGCTGGCTAGAAAGCAGATCCTACTTGTTGTCTGAGAGCTTCAGGGTGCAGGGTTATCTGCTTGCCTaGTGGGACCACTGTCTGTGC +
Preference number: 4 (lower is better)
Translates to: SCWLESRSYLLSESFRVQGYLLA*WDHCLC
Trigger: GCACAGACAGTGGTCCCATCAGGCAAGCAGATAACC...CTGCACCCTGAAGCTCTCAGACAACAAGTAGGATCTGCTTTCTAGCCAGCAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp CAGAAGGGAATTAAAACACAAAGCGGGCCTCAGAGGAAAGAGCTGCAAGTGGCTGATCCTTGGCTGGGATaGTCTGTCCTGGGATCCCAG +
Preference number: 4 (lower is better)
Translates to: QKGIKTQSGPQRKELQVADPWLG*SVLGSQ
Trigger: CTGGGATCCCAGGACAGAGCATCCCAGCCAAGGATC...AGCCACTTGCAGCTCTTTCCTCTGAGGCCCGCTTTGTGTTTTAATTCCCTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR GCA 90 bp CAAGCAGGGTATTTCAAGTCCTCCAGAAAAACAAAAGCACGAGGAGCCTTCCTTTCACAGCACTGCCCGTaGGCGCACACAGCATCTGGC +
Preference number: 4 (lower is better)
Translates to: QAGYFKSSRKTKARGAFLSQHCP*AHTASG
Trigger: GCCAGATGCTGTGTGCGCGCACGGGCAGTGCTGTGA...AAGGAAGGCTCCTCGTGCTTTTGTTTTTCTGGAGGACTTGAAATACCCTGCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp ATTGTTGCTCTCTGTGTGCTGGGAAAACAGACTCAGGACTATTGTAGGTCTGAGTGCCCAGGTTCCTGCTaGCCTGGGGTCCTCACCAAG +
Preference number: 4 (lower is better)
Translates to: IVALCVLGKQTQDYCRSECPGSC*PGVLTK
Trigger: CTTGGTGAGGACCCCAGGGCAGCAGGAACCTGGGCA...CTCAGACCTACAATAGTCCTGAGTCTGTTTTCCCAGCACACAGAGAGCAACAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp AAAACACAAAGCGGGCCTCAGAGGAAAGAGCTGCAAGTGGCTGGGCGCCCTACTCTGGTGAATGGGTCCTaGCTTATAGAGCATTTGTCG +
Preference number: 4 (lower is better)
Translates to: KTQSGPQRKELQVAGRPTLVNGS*LIEHLS
Trigger: CGACAAATGCTCTATAAGCCAGGACCCATTCACCAG...AGTAGGGCGCCCAGCCACTTGCAGCTCTTTCCTCTGAGGCCCGCTTTGTGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp CTGAAAGAGCAGAGGGAAAGAGTTGCCTGGCTGAGGTTGCCTTTCGTGAGCAACAGGGGGCTGTCTGAATaGTCCATGACAACTCCTCCA +
Preference number: 4 (lower is better)
Translates to: LKEQRERVAWLRLPFVSNRGLSE*SMTTPP
Trigger: TGGAGGAGTTGTCATGGACCATTCAGACAGCCCCCT...GTTGCTCACGAAAGGCAACCTCAGCCAGGCAACTCTTTCCCTCTGCTCTTTCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp GTGATGTCATCCCATATGTGTAACCTGGAAACACTCACACAGAGCGCAAACTCGCATACCCCTCGGCCGTaGCACTGCATGGCACACTTG +
Preference number: 4 (lower is better)
Translates to: VMSSHMCNLETLTQSANSHTPRP*HCMAHL
Trigger: CAAGTGTGCCATGCAGTGCCACGGCCGAGGGGTATG...CGAGTTTGCGCTCTGTGTGAGTGTTTCCAGGTTACACATATGGGATGACATCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp TTGTTGCTCTCTGTGTGCTGGGAAAACAGACTCAGGACTATTGTAGGTCTGAGAGGTGCACGTGGGGTCTaGTGGAGAGGCAGGAGCACT +
Preference number: 4 (lower is better)
Translates to: LLLSVCWENRLRTIVGLRGARGV*WRGRST
Trigger: AGTGCTCCTGCCTCTCCACCAGACCCCACGTGCACC...TCTCAGACCTACAATAGTCCTGAGTCTGTTTTCCCAGCACACAGAGAGCAACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp CAAGCAGGGTATTTCAAGTCCTCCAGAAAAACAAAAGCACGAGGAGCCTTCCTTGGTGCACGTGGGGTCTaGTGGAGAGGCAGGAGCACT +
Preference number: 4 (lower is better)
Translates to: QAGYFKSSRKTKARGAFLGARGV*WRGRST
Trigger: AGTGCTCCTGCCTCTCCACCAGACCCCACGTGCACC...AAGGAAGGCTCCTCGTGCTTTTGTTTTTCTGGAGGACTTGAAATACCCTGCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp TGCAGTAAAAAGGAGATTTCTATCTCCAGAGTTGATCGACTAGATCTGGTTACTTGGCGGGCAGGGGCCTaGCAGGGCCACTGGGTGCAC +
Preference number: 4 (lower is better)
Translates to: CSKKEISISRVDRLDLVTWRAGA*QGHWVH
Trigger: GTGCACCCAGTGGCCCTGCCAGGCCCCTGCCCGCCA...AGTAACCAGATCTAGTCGATCAACTCTGGAGATAGAAATCTCCTTTTTACTGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR TCA 90 bp GTGATGTCATCCCATATGTGTAACCTGGAAACACTCACACAGAGCGCAAACTCGGTCAGCACGTCTGGATaGTCCTTGGCTGGGATGCTC +
Preference number: 4 (lower is better)
Translates to: VMSSHMCNLETLTQSANSVSTSG*SLAGML
Trigger: GAGCATCCCAGCCAAGGATCATCCAGACGTGCTGAC...CGAGTTTGCGCTCTGTGTGAGTGTTTCCAGGTTACACATATGGGATGACATCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR TCA 90 bp GCTGGTAAGGCACCATCGGCATCCTTAGTGGACACTGGGGAGATGGCAGAAGATACCCCACTGATAAGCTaGGCATTGTCGTGGGATTTT +
Preference number: 4 (lower is better)
Translates to: AGKAPSASLVDTGEMAEDTPLIS*ALSWDF
Trigger: AAAATCCCACGACAATGCTCAGCTTATCAGTGGGGT...ATCTTCTGCCATCTCCCCAGTGTCCACTAAGGATGCCGATGGTGCCTTACCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR TCA 90 bp TTCTGGCTCAGAGTGCTCAGTAAACATCTGCTGAGAGGCAGGAGGACTCTTAGGGATCTCCTGCAGAGTTaGCTCGCTCAAAGCAGATGC +
Preference number: 4 (lower is better)
Translates to: FWLRVLSKHLLRGRRTLRDLLQS*LAQSRC
Trigger: GCATCTGCTTTGAGCGAGTCAACTCTGCAGGAGATC...CCTAAGAGTCCTCCTGCCTCTCAGCAGATGTTTACTGAGCACTCTGAGCCAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR GCA 90 bp TTGTTGCTCTCTGTGTGCTGGGAAAACAGACTCAGGACTATTGTAGGTCTGAGACAGTCTTCACAGCACTaGCCGTGCGCGCACACAGCA +
Preference number: 4 (lower is better)
Translates to: LLLSVCWENRLRTIVGLRQSSQH*PCAHTA
Trigger: TGCTGTGTGCGCGCACGGGCAGTGCTGTGAAGACTG...TCTCAGACCTACAATAGTCCTGAGTCTGTTTTCCCAGCACACAGAGAGCAACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR GCA 90 bp GTCAGAACAGAGCTAAGCAGTCTGTGGCCAGCTCGGGTTGTGCTGTTGGTTGCCCGCTCTTGGAGTCTTTaGCACAGTTACCATAAGGAT +
Preference number: 4 (lower is better)
Translates to: VRTELSSLWPARVVLLVARSWSL*HSYHKD
Trigger: ATCCTTATGGTAACTGTGGCAAAGACTCCAAGAGCG...GGCAACCAACAGCACAACCCGAGCTGGCCACAGACTGCTTAGCTCTGTTCTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR GCA 90 bp GCCAGGTTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTCGCTCTTGGAGTCTTTaGCACAGTTACCATAAGGAT +
Preference number: 4 (lower is better)
Translates to: ARFSLGCPELCVWYHNSLRSWSL*HSYHKD
Trigger: ATCCTTATGGTAACTGTGGCAAAGACTCCAAGAGCG...AAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAACCTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp AGCTGCTGGCTAGAAAGCAGATCCTACTTGTTGTCTGAGAGCTTCAGGGTGCAGTGGATGATCCTTGGCTaGGATGCTCTGTCCTGGGAT +
Preference number: 4 (lower is better)
Translates to: SCWLESRSYLLSESFRVQWMILG*DALSWD
Trigger: ATCCCAGGACAGAGCATCCCAGCCAAGGATCATCCA...CTGCACCCTGAAGCTCTCAGACAACAAGTAGGATCTGCTTTCTAGCCAGCAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp CAGAAGGGAATTAAAACACAAAGCGGGCCTCAGAGGAAAGAGCTGCAAGTGGCTCGCGCACACAGCATCTaGCTTCAGAGTACAGGTGGT +
Preference number: 4 (lower is better)
Translates to: QKGIKTQSGPQRKELQVARAHSI*LQSTGG
Trigger: ACCACCTGTACTCTGAAGCCAGATGCTGTGTGCGCG...AGCCACTTGCAGCTCTTTCCTCTGAGGCCCGCTTTGTGTTTTAATTCCCTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp GTCCCATCAAGCAGGGTATTTCAAGTCCTCCAGAAAAACAAAAGCACGAGGAGCAGCCGGTTTAGCACCTaGTCCCCAGAGCGTGACACA +
Preference number: 4 (lower is better)
Translates to: VPSSRVFQVLQKNKSTRSSRFST*SPERDT
Trigger: TGTGTCACGCTCTGGGGACCAGGTGCTAAACCGGCT...GCTCCTCGTGCTTTTGTTTTTCTGGAGGACTTGAAATACCCTGCTTGATGGGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp AGCTGCTGGCTAGAAAGCAGATCCTACTTGTTGTCTGAGAGCTTCAGGGTGCAGCACAAGCCCTGGGTCTaGCATGTCATCACCCAAGTA +
Preference number: 4 (lower is better)
Translates to: SCWLESRSYLLSESFRVQHKPWV*HVITQV
Trigger: TACTTGGGTGATGACATGCCAGACCCAGGGCTTGTG...CTGCACCCTGAAGCTCTCAGACAACAAGTAGGATCTGCTTTCTAGCCAGCAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp TTGTTGCTCTCTGTGTGCTGGGAAAACAGACTCAGGACTATTGTAGGTCTGAGAGGCCGTGGCACTGCATaGCACACTTGTGAACGCCGA +
Preference number: 4 (lower is better)
Translates to: LLLSVCWENRLRTIVGLRGRGTA*HTCERR
Trigger: TCGGCGTTCACAAGTGTGCCATGCAGTGCCACGGCC...TCTCAGACCTACAATAGTCCTGAGTCTGTTTTCCCAGCACACAGAGAGCAACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR TCA 90 bp TTGCTTCTGAAGGTAGCTTCCCAGTCACATACTGAAAGAGCAGAGGGAAAGAGTTCCTGCTGCAGCTGCTaGACACCATGGGGAATGGGA +
Preference number: 4 (lower is better)
Translates to: LLLKVASQSHTERAEGKSSCCSC*TPWGMG
Trigger: TCCCATTCCCCATGGTGTTCAGCAGCTGCAGCAGGA...ACTCTTTCCCTCTGCTCTTTCAGTATGTGACTGGGAAGCTACCTTCAGAAGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR TCA 90 bp TTTGGGTGCTTTGTCCAATGGCTACTAATAAGGATACCAGACTCAGGCTGTGCCCGGCTTGCACCACCTTaGCACTGGATTTTCCCACAC +
Preference number: 4 (lower is better)
Translates to: FGCFVQWLLIRIPDSGCARLAPP*HWIFPH
Trigger: GTGTGGGAAAATCCAGTGTCAAGGTGGTGCAAGCCG...GGCACAGCCTGAGTCTGGTATCCTTATTAGTAGCCATTGGACAAAGCACCCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR TCA 90 bp GTCCCATCAAGCAGGGTATTTCAAGTCCTCCAGAAAAACAAAAGCACGAGGAGCCAGCATTGGTACCAATaGCAGGTCGGCTTGCACCAC +
Preference number: 4 (lower is better)
Translates to: VPSSRVFQVLQKNKSTRSQHWYQ*QVGLHH
Trigger: GTGGTGCAAGCCGACCTGTCATTGGTACCAATGCTG...GCTCCTCGTGCTTTTGTTTTTCTGGAGGACTTGAAATACCCTGCTTGATGGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp GTCAGAACAGAGCTAAGCAGTCTGTGGCCAGCTCGGGTTGTGCTGTTGGTTGCCAAACTCTCTGTTGTCTaGCACAATAACCAGCTCTAC +
Preference number: 4 (lower is better)
Translates to: VRTELSSLWPARVVLLVAKLSVV*HNNQLY
Trigger: GTAGAGCTGGTTATTGTGGCAGACAACAGAGAGTTT...GGCAACCAACAGCACAACCCGAGCTGGCCACAGACTGCTTAGCTCTGTTCTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp AGCTGCTGGCTAGAAAGCAGATCCTACTTGTTGTCTGAGAGCTTCAGGGTGCAGCAGTCTAGAAACTCATaGAGGCTGGTGAATGGGTCC +
Preference number: 4 (lower is better)
Translates to: SCWLESRSYLLSESFRVQQSRNS*RLVNGS
Trigger: GGACCCATTCACCAGCCTCCATGAGTTTCTAGACTG...CTGCACCCTGAAGCTCTCAGACAACAAGTAGGATCTGCTTTCTAGCCAGCAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp GCCATTGGGTTGAGGCACCTTGAAGATTTGCTTCTGAAGGTAGCTTCCCAGTCATTCATCCCGAAGTTGTaGCCCAGCTCATGTGCCAAG +
Preference number: 4 (lower is better)
Translates to: AIGLRHLEDLLLKVASQSFIPKL*PSSCAK
Trigger: CTTGGCACATGAGCTGGGCCACAACTTCGGGATGAA...TGACTGGGAAGCTACCTTCAGAAGCAAATCTTCAAGGTGCCTCAACCCAATGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp GATCTTAAAGCAGTCAGACGAGGTAGAGGACTGCTGTCATTTACCTTCTGTCGTGAACACCATGGGGAATaGGAACCCCGTGGACGGGTT +
Preference number: 4 (lower is better)
Translates to: DLKAVRRGRGLLSFTFCREHHGE*EPRGRV
Trigger: AACCCGTCCACGGGGTTCCCATTCCCCATGGTGTTC...ACGACAGAAGGTAAATGACAGCAGTCCTCTACCTCGTCTGACTGCTTTAAGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp TTCCCTTCTGCTTCAAGGCACAGGCCAGCCATTAATGTTAGTTACCCTTCCAAAGGTCACAGGAGTTGCTaGAGCCCCTGCATGCAGTTC +
Preference number: 4 (lower is better)
Translates to: FPSASRHRPAINVSYPSKGHRSC*SPCMQF
Trigger: GAACTGCATGCAGGGGCTCCAGCAACTCCTGTGACC...TTTGGAAGGGTAACTAACATTAATGGCTGGCCTGTGCCTTGAAGCAGAAGGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp GGCTCACAGCTCCCAGAGCATGACTTAACTCATCAGAGTTTCAAAGCAATAGGTAGCCGGTTTAGCACCTaGTCCCCAGAGCGTGACACA +
Preference number: 4 (lower is better)
Translates to: GSQLPEHDLTHQSFKAIGSRFST*SPERDT
Trigger: TGTGTCACGCTCTGGGGACCAGGTGCTAAACCGGCT...ACCTATTGCTTTGAAACTCTGATGAGTTAAGTCATGCTCTGGGAGCTGTGAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp TGCAGTAAAAAGGAGATTTCTATCTCCAGAGTTGATCGACTAGATCTGGTTACTGCCTGGCAGGGCCACTaGGTGCACGTGGGGTCTGGT +
Preference number: 4 (lower is better)
Translates to: CSKKEISISRVDRLDLVTAWQGH*VHVGSG
Trigger: ACCAGACCCCACGTGCACCCAGTGGCCCTGCCAGGC...AGTAACCAGATCTAGTCGATCAACTCTGGAGATAGAAATCTCCTTTTTACTGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp TCAGACGAGGTAGAGGACTGCTGTCATTTACCTTCTGTCGTGAAAGCTAGTCATGGTTTTCGAATGCCCTaGGCCTGCCTGACTGCAGGA +
Preference number: 4 (lower is better)
Translates to: SDEVEDCCHLPSVVKASHGFRMP*ACLTAG
Trigger: TCCTGCAGTCAGGCAGGCCCAGGGCATTCGAAAACC...ATGACTAGCTTTCACGACAGAAGGTAAATGACAGCAGTCCTCTACCTCGTCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp TTGCTTCTGAAGGTAGCTTCCCAGTCACATACTGAAAGAGCAGAGGGAAAGAGTGGTTTTCGAATGCCCTaGGCCTGCCTGACTGCAGGA +
Preference number: 4 (lower is better)
Translates to: LLLKVASQSHTERAEGKSGFRMP*ACLTAG
Trigger: TCCTGCAGTCAGGCAGGCCCAGGGCATTCGAAAACC...ACTCTTTCCCTCTGCTCTTTCAGTATGTGACTGGGAAGCTACCTTCAGAAGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CAA 72 bp TCTCTCCAAAGCTGCTGGCTAGAAAGCAGATCCTACTaGTTGTCTGAGAGCTTCAGGGTGCAGGACCTGAAG +
Preference number: 4 (lower is better)
Translates to: SLQSCWLESRSY*LSESFRVQDLK
Trigger: CTTCAGGTCCTGCACCCTGAAGCTCTCAGACAACAAGTAGGATCTGCTTTCTAGCCAGCAGCTTTGGAGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CAA 72 bp CTGAAAGAGCAGAGGGAAAGAGTTGCCTGGCTGAGGTaGCCTTTCGTGAGCAACTCAGTATTCGGAAACGGA +
Preference number: 4 (lower is better)
Translates to: LKEQRERVAWLR*PFVSNSVFGNG
Trigger: TCCGTTTCCGAATACTGAGTTGCTCACGAAAGGCAACCTCAGCCAGGCAACTCTTTCCCTCTGCTCTTTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR TCA 90 bp TTCCCTTCTGCTTCAAGGCACAGGCCAGCCATTAATGTTAGTTACCCTTCCAAAACTGAGGCTGACCACTaGTGCAGCATCTCCTTGCAC +
Preference number: 4 (lower is better)
Translates to: FPSASRHRPAINVSYPSKTEADH*CSISLH
Trigger: GTGCAAGGAGATGCTGCATCAGTGGTCAGCCTCAGT...TTTGGAAGGGTAACTAACATTAATGGCTGGCCTGTGCCTTGAAGCAGAAGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR TCA 90 bp ACGTGGATTTATTTACCCAGTCATGAAGACCATGCTTCCCAATGCTGGATACAGCCTGGAGGCTTCAGCTaGCAGTCTTCACAGCACTGC +
Preference number: 4 (lower is better)
Translates to: TWIYLPSHEDHASQCWIQPGGFS*QSSQHC
Trigger: GCAGTGCTGTGAAGACTGTCAGCTGAAGCCTCCAGG...CTGTATCCAGCATTGGGAAGCATGGTCTTCATGACTGGGTAAATAAATCCACGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR TCA 90 bp TCAGACGAGGTAGAGGACTGCTGTCATTTACCTTCTGTCGTGAAAGCTAGTCATCAGCATTGGTACCAATaGCAGGTCGGCTTGCACCAC +
Preference number: 4 (lower is better)
Translates to: SDEVEDCCHLPSVVKASHQHWYQ*QVGLHH
Trigger: GTGGTGCAAGCCGACCTGTCATTGGTACCAATGCTG...ATGACTAGCTTTCACGACAGAAGGTAAATGACAGCAGTCCTCTACCTCGTCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp TGTACTCCACAAAAGGCATGGAAATGGTACATTCATATGTGTGCCCATGTCTCCGCAGCCTCCTTTCTCTaGGGCCATTCTGCAGCTGCA +
Preference number: 4 (lower is better)
Translates to: CTPQKAWKWYIHMCAHVSAASFL*GHSAAA
Trigger: TGCAGCTGCAGAATGGCCGCAGAGAAAGGAGGCTGC...GGAGACATGGGCACACATATGAATGTACCATTTCCATGCCTTTTGTGGAGTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR GCA 90 bp TGCCATGAGAAGAGCATTCCACGTGGTTATAGCTTTTGCAAGCATATGGATTCTCAGTCTTCACAGCACTaGCCGTGCGCGCACACAGCA +
Preference number: 4 (lower is better)
Translates to: CHEKSIPRGYSFCKHMDSQSSQH*PCAHTA
Trigger: TGCTGTGTGCGCGCACGGGCAGTGCTGTGAAGACTG...AGAATCCATATGCTTGCAAAAGCTATAACCACGTGGAATGCTCTTCTCATGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp TGTACTCCACAAAAGGCATGGAAATGGTACATTCATATGTGTGCCCATGTCTCCCAGAGCGTGACACACTaGTGCTCATGGGTCTGGCAG +
Preference number: 4 (lower is better)
Translates to: CTPQKAWKWYIHMCAHVSQSVTH*CSWVWQ
Trigger: CTGCCAGACCCATGAGCAGCAGTGTGTCACGCTCTG...GGAGACATGGGCACACATATGAATGTACCATTTCCATGCCTTTTGTGGAGTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR GCA 90 bp GTCCCATCAAGCAGGGTATTTCAAGTCCTCCAGAAAAACAAAAGCACGAGGAGCTGGCATTTCAGCGAGTaGCTGTCCTTGGGGGTATTG +
Preference number: 4 (lower is better)
Translates to: VPSSRVFQVLQKNKSTRSWHFSE*LSLGVL
Trigger: CAATACCCCCAAGGACAGGCACTCGCTGAAATGCCA...GCTCCTCGTGCTTTTGTTTTTCTGGAGGACTTGAAATACCCTGCTTGATGGGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp GTCCCATCAAGCAGGGTATTTCAAGTCCTCCAGAAAAACAAAAGCACGAGGAGCCATGTAGGTACACATTaGCTGGACAGTGAGGGGCAG +
Preference number: 4 (lower is better)
Translates to: VPSSRVFQVLQKNKSTRSHVGTH*LDSEGQ
Trigger: CTGCCCCTCACTGTCCAGCCAATGTGTACCTACATG...GCTCCTCGTGCTTTTGTTTTTCTGGAGGACTTGAAATACCCTGCTTGATGGGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp TTCCCTTCTGCTTCAAGGCACAGGCCAGCCATTAATGTTAGTTACCCTTCCAAAAAGGGTGGAGCCCAGTaGGCTTCACAGTGGCAATTC +
Preference number: 4 (lower is better)
Translates to: FPSASRHRPAINVSYPSKKGGAQ*ASQWQF
Trigger: GAATTGCCACTGTGAAGCCCACTGGGCTCCACCCTT...TTTGGAAGGGTAACTAACATTAATGGCTGGCCTGTGCCTTGAAGCAGAAGGGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp TTCCCTTCTGCTTCAAGGCACAGGCCAGCCATTAATGTTAGTTACCCTTCCAAACTTGTCACAGAAGGGTaGAGCCCAGTGGGCTTCACA +
Preference number: 4 (lower is better)
Translates to: FPSASRHRPAINVSYPSKLVTEG*SPVGFT
Trigger: TGTGAAGCCCACTGGGCTCCACCCTTCTGTGACAAG...TTTGGAAGGGTAACTAACATTAATGGCTGGCCTGTGCCTTGAAGCAGAAGGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp GCCATTGGGTTGAGGCACCTTGAAGATTTGCTTCTGAAGGTAGCTTCCCAGTCACCTACAGTCAAGCCCTaGTTATCTGCTTGCCTGATG +
Preference number: 4 (lower is better)
Translates to: AIGLRHLEDLLLKVASQSPTVKP*LSACLM
Trigger: CATCAGGCAAGCAGATAACCAGGGCTTGACTGTAGG...TGACTGGGAAGCTACCTTCAGAAGCAAATCTTCAAGGTGCCTCAACCCAATGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp GACTGCTGTCATTTACCTTCTGTCGTGAAAGCTAGTCATCCTACGCCCCATCTGAGGGGGCTGTCTGAATaGTCCTCAAAGAACAGACGA +
Preference number: 4 (lower is better)
Translates to: DCCHLPSVVKASHPTPHLRGLSE*SSKNRR
Trigger: TCGTCTGTTCTTTGAGGACCATTCAGACAGCCCCCT...CAGATGGGGCGTAGGATGACTAGCTTTCACGACAGAAGGTAAATGACAGCAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp TGCCATGAGAAGAGCATTCCACGTGGTTATAGCTTTTGCAAGCATATGGATTCTGCAGCCTCCTTTCTCTaGGGCCATTCTGCAGCTGCA +
Preference number: 4 (lower is better)
Translates to: CHEKSIPRGYSFCKHMDSAASFL*GHSAAA
Trigger: TGCAGCTGCAGAATGGCCGCAGAGAAAGGAGGCTGC...AGAATCCATATGCTTGCAAAAGCTATAACCACGTGGAATGCTCTTCTCATGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp TTCCCTTCTGCTTCAAGGCACAGGCCAGCCATTAATGTTAGTTACCCTTCCAAATGCACACTTTGTTCCTaGAAGCACAAGCCCTGGGTC +
Preference number: 4 (lower is better)
Translates to: FPSASRHRPAINVSYPSKCTLCS*KHKPWV
Trigger: GACCCAGGGCTTGTGCTTGCAGGAACAAAGTGTGCA...TTTGGAAGGGTAACTAACATTAATGGCTGGCCTGTGCCTTGAAGCAGAAGGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp AAGGAGATTTCTATCTCCAGAGTTGATCGACTAGATCTGGTTACTAGTTCACATTGCCCAGGTTCCTGCTaGCCTGGGGTCCTCACCAAG +
Preference number: 4 (lower is better)
Translates to: KEISISRVDRLDLVTSSHCPGSC*PGVLTK
Trigger: CTTGGTGAGGACCCCAGGGCAGCAGGAACCTGGGCA...ATGTGAACTAGTAACCAGATCTAGTCGATCAACTCTGGAGATAGAAATCTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp TATTGGTGTTTCTTAGTCTGGGTCATTTGTGTATGGCTTAGGCCGTCTGAAAACTGGGATGCTCTGTCCTaGGATCCCAGGGTCCTTGCT +
Preference number: 4 (lower is better)
Translates to: YWCFLVWVICVWLRPSENWDALS*DPRVLA
Trigger: AGCAAGGACCCTGGGATCCCAGGACAGAGCATCCCA...GTTTTCAGACGGCCTAAGCCATACACAAATGACCCAGACTAAGAAACACCAATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp TTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGAAGGTTTGTAGCTGTCAGTaGTGTTTTTCATTGGCTCTA +
Preference number: 4 (lower is better)
Translates to: FSLGCPELCVWYHNSLGKVCSCQ*CFSLAL
Trigger: TAGAGCCAATGAAAAACACCACTGACAGCTACAAAC...CTTCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp GTGATGTCATCCCATATGTGTAACCTGGAAACACTCACACAGAGCGCAAACTCGCTCTCCAGTGTGTCATaGTTCATCCCGAAGTTGTGG +
Preference number: 4 (lower is better)
Translates to: VMSSHMCNLETLTQSANSLSSVS*FIPKLW
Trigger: CCACAACTTCGGGATGAACCATGACACACTGGAGAG...CGAGTTTGCGCTCTGTGTGAGTGTTTCCAGGTTACACATATGGGATGACATCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp CAAGCAGGGTATTTCAAGTCCTCCAGAAAAACAAAAGCACGAGGAGCCTTCCTTCACAAGCCCTGGGTCTaGCATGTCATCACCCAAGTA +
Preference number: 4 (lower is better)
Translates to: QAGYFKSSRKTKARGAFLHKPWV*HVITQV
Trigger: TACTTGGGTGATGACATGCCAGACCCAGGGCTTGTG...AAGGAAGGCTCCTCGTGCTTTTGTTTTTCTGGAGGACTTGAAATACCCTGCTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp TTCTGGCTCAGAGTGCTCAGTAAACATCTGCTGAGAGGCAGGAGGACTCTTAGGCAGTGGGCTTCACAGTaGCAATTCTTCCTGTTGTTA +
Preference number: 4 (lower is better)
Translates to: FWLRVLSKHLLRGRRTLRQWASQ*QFFLLL
Trigger: TAACAACAGGAAGAATTGCCACTGTGAAGCCCACTG...CCTAAGAGTCCTCCTGCCTCTCAGCAGATGTTTACTGAGCACTCTGAGCCAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR TCA 90 bp CAGAAGGGAATTAAAACACAAAGCGGGCCTCAGAGGAAAGAGCTGCAAGTGGCTAGACATCTTCCATGGTaGGGTTGGACTTGTTATGCT +
Preference number: 4 (lower is better)
Translates to: QKGIKTQSGPQRKELQVARHLPW*GWTCYA
Trigger: AGCATAACAAGTCCAACCTCACCATGGAAGATGTCT...AGCCACTTGCAGCTCTTTCCTCTGAGGCCCGCTTTGTGTTTTAATTCCCTTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR GCA 90 bp TGCAGTAAAAAGGAGATTTCTATCTCCAGAGTTGATCGACTAGATCTGGTTACTCGGCCCCCAAAGGCCTaGTTGACCTCTGGTAGGTTG +
Preference number: 4 (lower is better)
Translates to: CSKKEISISRVDRLDLVTRPPKA*LTSGRL
Trigger: CAACCTACCAGAGGTCAAGCAGGCCTTTGGGGGCCG...AGTAACCAGATCTAGTCGATCAACTCTGGAGATAGAAATCTCCTTTTTACTGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp CAAGCAGGGTATTTCAAGTCCTCCAGAAAAACAAAAGCACGAGGAGCCTTCCTTCATGGGTCTGGCAGATaGCGTTGTAGCAGTAACCAT +
Preference number: 4 (lower is better)
Translates to: QAGYFKSSRKTKARGAFLHGSGR*RCSSNH
Trigger: ATGGTTACTGCTACAACGGCATCTGCCAGACCCATG...AAGGAAGGCTCCTCGTGCTTTTGTTTTTCTGGAGGACTTGAAATACCCTGCTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp CCACAAAAGGCATGGAAATGGTACATTCATATGTGTGCCCATGTCTCCTGCAAGAATGACAGGTCGGCTTaGACCACCTTGACACTGGAT +
Preference number: 4 (lower is better)
Translates to: PQKAWKWYIHMCAHVSCKNDRSA*TTLTLD
Trigger: ATCCAGTGTCAAGGTGGTGCAAGCCGACCTGTCATT...CTTGCAGGAGACATGGGCACACATATGAATGTACCATTTCCATGCCTTTTGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR GCA 90 bp TTGTTGCTCTCTGTGTGCTGGGAAAACAGACTCAGGACTATTGTAGGTCTGAGATGGGACCACTGTCTGTaGTTCCTCCAAAGCCAAACT +
Preference number: 4 (lower is better)
Translates to: LLLSVCWENRLRTIVGLRWDHCL*FLQSQT
Trigger: AGTTTGGCTTTGGAGGAAGCACAGACAGTGGTCCCA...TCTCAGACCTACAATAGTCCTGAGTCTGTTTTCCCAGCACACAGAGAGCAACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp CCACAAAAGGCATGGAAATGGTACATTCATATGTGTGCCCATGTCTCCTGCAAGATGGAGGCTGGTGAATaGGTCCTGGCTTATAGAGCA +
Preference number: 4 (lower is better)
Translates to: PQKAWKWYIHMCAHVSCKMEAGE*VLAYRA
Trigger: TGCTCTATAAGCCAGGACCCATTCACCAGCCTCCAT...CTTGCAGGAGACATGGGCACACATATGAATGTACCATTTCCATGCCTTTTGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp GATCTTAAAGCAGTCAGACGAGGTAGAGGACTGCTGTCATTTACCTTCTGTCGTCTCTCCAGTGTGTCATaGTTCATCCCGAAGTTGTGG +
Preference number: 4 (lower is better)
Translates to: DLKAVRRGRGLLSFTFCRLSSVS*FIPKLW
Trigger: CCACAACTTCGGGATGAACCATGACACACTGGAGAG...ACGACAGAAGGTAAATGACAGCAGTCCTCTACCTCGTCTGACTGCTTTAAGATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp ACGTGGATTTATTTACCCAGTCATGAAGACCATGCTTCCCAATGCTGGATACAGCCCTGTGCAGAATTCTaGGAGGTCACAGGAGTTGCT +
Preference number: 4 (lower is better)
Translates to: TWIYLPSHEDHASQCWIQPCAEF*EVTGVA
Trigger: AGCAACTCCTGTGACCTCCCAGAATTCTGCACAGGG...CTGTATCCAGCATTGGGAAGCATGGTCTTCATGACTGGGTAAATAAATCCACGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp ACAACAACTCCAATGGAGCTGAAGATAGTGCAAACTTCTGTCTTCACTGTTGAGACACACTGCTGCTCATaGGTCTGGCAGATGCCGTTG +
Preference number: 4 (lower is better)
Translates to: TTTPMELKIVQTSVFTVETHCCS*VWQMPL
Trigger: CAACGGCATCTGCCAGACCCATGAGCAGCAGTGTGT...CTCAACAGTGAAGACAGAAGTTTGCACTATCTTCAGCTCCATTGGAGTTGTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp TGCCATGAGAAGAGCATTCCACGTGGTTATAGCTTTTGCAAGCATATGGATTCTTCACCCAAGTACACATaGGTCCCCCGGCACAGAATC +
Preference number: 4 (lower is better)
Translates to: CHEKSIPRGYSFCKHMDSSPKYT*VPRHRI
Trigger: GATTCTGTGCCGGGGGACCCATGTGTACTTGGGTGA...AGAATCCATATGCTTGCAAAAGCTATAACCACGTGGAATGCTCTTCTCATGGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp ATTGTTGCTCTCTGTGTGCTGGGAAAACAGACTCAGGACTATTGTAGGTCTGAGCCTACAGTCAAGCCCTaGTTATCTGCTTGCCTGATG +
Preference number: 4 (lower is better)
Translates to: IVALCVLGKQTQDYCRSEPTVKP*LSACLM
Trigger: CATCAGGCAAGCAGATAACCAGGGCTTGACTGTAGG...CTCAGACCTACAATAGTCCTGAGTCTGTTTTCCCAGCACACAGAGAGCAACAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp ACGTGGATTTATTTACCCAGTCATGAAGACCATGCTTCCCAATGCTGGATACAGAGAAGTCCTGCTCAGTaGATCAGCAGGCAGAGGCTT +
Preference number: 4 (lower is better)
Translates to: TWIYLPSHEDHASQCWIQRSPAQ*ISRQRL
Trigger: AAGCCTCTGCCTGCTGATCCACTGAGCAGGACTTCT...CTGTATCCAGCATTGGGAAGCATGGTCTTCATGACTGGGTAAATAAATCCACGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR TCA 90 bp AAGGAGATTTCTATCTCCAGAGTTGATCGACTAGATCTGGTTACTAGTTCACATCCGTGGACGGGTTCATaGTGCAGCCTCCTTTCTCTG +
Preference number: 4 (lower is better)
Translates to: KEISISRVDRLDLVTSSHPWTGS*CSLLSL
Trigger: CAGAGAAAGGAGGCTGCATCATGAACCCGTCCACGG...ATGTGAACTAGTAACCAGATCTAGTCGATCAACTCTGGAGATAGAAATCTCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR TCA 90 bp TGCAGTAAAAAGGAGATTTCTATCTCCAGAGTTGATCGACTAGATCTGGTTACTCCTGGAGGCTTCAGCTaGCAGTCTTCACAGCACTGC +
Preference number: 4 (lower is better)
Translates to: CSKKEISISRVDRLDLVTPGGFS*QSSQHC
Trigger: GCAGTGCTGTGAAGACTGTCAGCTGAAGCCTCCAGG...AGTAACCAGATCTAGTCGATCAACTCTGGAGATAGAAATCTCCTTTTTACTGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR TCA 90 bp TGCAGTAAAAAGGAGATTTCTATCTCCAGAGTTGATCGACTAGATCTGGTTACTCGTCGAGGGGCCTGCTaGTGTCCATGTTCTGGCATT +
Preference number: 4 (lower is better)
Translates to: CSKKEISISRVDRLDLVTRRGAC*CPCSGI
Trigger: AATGCCAGAACATGGACATCAGCAGGCCCCTCGACG...AGTAACCAGATCTAGTCGATCAACTCTGGAGATAGAAATCTCCTTTTTACTGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp TGCAGTAAAAAGGAGATTTCTATCTCCAGAGTTGATCGACTAGATCTGGTTACTAGTTGCTGGAGCCCCTaGATGCAGTTCCTGGAGGCT +
Preference number: 4 (lower is better)
Translates to: CSKKEISISRVDRLDLVTSCWSP*MQFLEA
Trigger: AGCCTCCAGGAACTGCATGCAGGGGCTCCAGCAACT...AGTAACCAGATCTAGTCGATCAACTCTGGAGATAGAAATCTCCTTTTTACTGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp ACGTGGATTTATTTACCCAGTCATGAAGACCATGCTTCCCAATGCTGGATACAGTGGGACCACTGTCTGTaGTTCCTCCAAAGCCAAACT +
Preference number: 4 (lower is better)
Translates to: TWIYLPSHEDHASQCWIQWDHCL*FLQSQT
Trigger: AGTTTGGCTTTGGAGGAAGCACAGACAGTGGTCCCA...CTGTATCCAGCATTGGGAAGCATGGTCTTCATGACTGGGTAAATAAATCCACGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp TGTACTCCACAAAAGGCATGGAAATGGTACATTCATATGTGTGCCCATGTCTCCGTGCCATGCCGATGGTaGTTCCTTGGAAATAAACCC +
Preference number: 4 (lower is better)
Translates to: CTPQKAWKWYIHMCAHVSVPCRW*FLGNKP
Trigger: GGGTTTATTTCCAAGGAACCACCATCGGCATGGCAC...GGAGACATGGGCACACATATGAATGTACCATTTCCATGCCTTTTGTGGAGTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp ACAACAACTCCAATGGAGCTGAAGATAGTGCAAACTTCTGTCTTCACTGTTGAGGGGGGTATTGAAATGTaGTGCCCGGTTCATCAGCAG +
Preference number: 4 (lower is better)
Translates to: TTTPMELKIVQTSVFTVEGGIEM*CPVHQQ
Trigger: CTGCTGATGAACCGGGCACCACATTTCAATACCCCC...CTCAACAGTGAAGACAGAAGTTTGCACTATCTTCAGCTCCATTGGAGTTGTTGT
47% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp GATCTTAAAGCAGTCAGACGAGGTAGAGGACTGCTGTCATTTACCTTCTGTCGTACCATAAGGATCTCCTaGAGAGTTGACTCGCTCAAA +
Preference number: 4 (lower is better)
Translates to: DLKAVRRGRGLLSFTFCRTIRIS*RVDSLK
Trigger: TTTGAGCGAGTCAACTCTGCAGGAGATCCTTATGGT...ACGACAGAAGGTAAATGACAGCAGTCCTCTACCTCGTCTGACTGCTTTAAGATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp TCAGACGAGGTAGAGGACTGCTGTCATTTACCTTCTGTCGTGAAAGCTAGTCATACCATAAGGATCTCCTaGAGAGTTGACTCGCTCAAA +
Preference number: 4 (lower is better)
Translates to: SDEVEDCCHLPSVVKASHTIRIS*RVDSLK
Trigger: TTTGAGCGAGTCAACTCTGCAGGAGATCCTTATGGT...ATGACTAGCTTTCACGACAGAAGGTAAATGACAGCAGTCCTCTACCTCGTCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR GCA 90 bp AACTCATCAGAGTTTCAAAGCAATAGGTGCCATTGGGAAATTCAGGTTGCATCATGCACACTTTGTTCCTaGAAGCACAAGCCCTGGGTC +
Preference number: 4 (lower is better)
Translates to: NSSEFQSNRCHWEIQVASCTLCS*KHKPWV
Trigger: GACCCAGGGCTTGTGCTTGCAGGAACAAAGTGTGCA...TGATGCAACCTGAATTTCCCAATGGCACCTATTGCTTTGAAACTCTGATGAGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp AACTCATCAGAGTTTCAAAGCAATAGGTGCCATTGGGAAATTCAGGTTGCATCATTCATCCCGAAGTTGTaGCCCAGCTCATGTGCCAAG +
Preference number: 4 (lower is better)
Translates to: NSSEFQSNRCHWEIQVASFIPKL*PSSCAK
Trigger: CTTGGCACATGAGCTGGGCCACAACTTCGGGATGAA...TGATGCAACCTGAATTTCCCAATGGCACCTATTGCTTTGAAACTCTGATGAGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp AAGGAGATTTCTATCTCCAGAGTTGATCGACTAGATCTGGTTACTAGTTCACATCGCGCACACAGCATCTaGCTTCAGAGTACAGGTGGT +
Preference number: 4 (lower is better)
Translates to: KEISISRVDRLDLVTSSHRAHSI*LQSTGG
Trigger: ACCACCTGTACTCTGAAGCCAGATGCTGTGTGCGCG...ATGTGAACTAGTAACCAGATCTAGTCGATCAACTCTGGAGATAGAAATCTCCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp TTGCTTCTGAAGGTAGCTTCCCAGTCACATACTGAAAGAGCAGAGGGAAAGAGTGGATTTTCCCACACTTaGCATCTCTCAGCTCACATT +
Preference number: 4 (lower is better)
Translates to: LLLKVASQSHTERAEGKSGFSHT*HLSAHI
Trigger: AATGTGAGCTGAGAGATGCCAAGTGTGGGAAAATCC...ACTCTTTCCCTCTGCTCTTTCAGTATGTGACTGGGAAGCTACCTTCAGAAGCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp GTCCCATCAAGCAGGGTATTTCAAGTCCTCCAGAAAAACAAAAGCACGAGGAGCACCTCCTTCCTGCTGTaGGATATTTGTTTCTATGGA +
Preference number: 4 (lower is better)
Translates to: VPSSRVFQVLQKNKSTRSTSFLL*DICFYG
Trigger: TCCATAGAAACAAATATCCCACAGCAGGAAGGAGGT...GCTCCTCGTGCTTTTGTTTTTCTGGAGGACTTGAAATACCCTGCTTGATGGGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR TCA 90 bp TATTGGTGTTTCTTAGTCTGGGTCATTTGTGTATGGCTTAGGCCGTCTGAAAACTCTTTTCCTTGCCTCTaGAACTCTCTGTTGTCTGCC +
Preference number: 4 (lower is better)
Translates to: YWCFLVWVICVWLRPSENSFPCL*NSLLSA
Trigger: GGCAGACAACAGAGAGTTTCAGAGGCAAGGAAAAGA...GTTTTCAGACGGCCTAAGCCATACACAAATGACCCAGACTAAGAAACACCAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR TCA 90 bp TGCAGTAAAAAGGAGATTTCTATCTCCAGAGTTGATCGACTAGATCTGGTTACTGATCTCCTGCAGAGTTaGCTCGCTCAAAGCAGATGC +
Preference number: 4 (lower is better)
Translates to: CSKKEISISRVDRLDLVTDLLQS*LAQSRC
Trigger: GCATCTGCTTTGAGCGAGTCAACTCTGCAGGAGATC...AGTAACCAGATCTAGTCGATCAACTCTGGAGATAGAAATCTCCTTTTTACTGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp GTCCCATCAAGCAGGGTATTTCAAGTCCTCCAGAAAAACAAAAGCACGAGGAGCACTTGTCAACGTGATTaGCGATCTCTATTAATCGCT +
Preference number: 4 (lower is better)
Translates to: VPSSRVFQVLQKNKSTRSTCQRD*RSLLIA
Trigger: AGCGATTAATAGAGATCGCCAATCACGTTGACAAGT...GCTCCTCGTGCTTTTGTTTTTCTGGAGGACTTGAAATACCCTGCTTGATGGGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp TTGCTTCTGAAGGTAGCTTCCCAGTCACATACTGAAAGAGCAGAGGGAAAGAGTGATCCGGATGTTCAGTaGTCTGTAAAACTTGTCAAC +
Preference number: 4 (lower is better)
Translates to: LLLKVASQSHTERAEGKSDPDVQ*SVKLVN
Trigger: GTTGACAAGTTTTACAGACCACTGAACATCCGGATC...ACTCTTTCCCTCTGCTCTTTCAGTATGTGACTGGGAAGCTACCTTCAGAAGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp TGCCATGAGAAGAGCATTCCACGTGGTTATAGCTTTTGCAAGCATATGGATTCTTGGGTGCCATGCCGATaGTGGTTCCTTGGAAATAAA +
Preference number: 4 (lower is better)
Translates to: CHEKSIPRGYSFCKHMDSWVPCR*WFLGNK
Trigger: TTTATTTCCAAGGAACCACCATCGGCATGGCACCCA...AGAATCCATATGCTTGCAAAAGCTATAACCACGTGGAATGCTCTTCTCATGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp TTGCTTCTGAAGGTAGCTTCCCAGTCACATACTGAAAGAGCAGAGGGAAAGAGTACCTCCTTCCTGCTGTaGGATATTTGTTTCTATGGA +
Preference number: 4 (lower is better)
Translates to: LLLKVASQSHTERAEGKSTSFLL*DICFYG
Trigger: TCCATAGAAACAAATATCCCACAGCAGGAAGGAGGT...ACTCTTTCCCTCTGCTCTTTCAGTATGTGACTGGGAAGCTACCTTCAGAAGCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp TGCAGTAAAAAGGAGATTTCTATCTCCAGAGTTGATCGACTAGATCTGGTTACTGGGGGTATTGAAATGTaGTGCCCGGTTCATCAGCAG +
Preference number: 4 (lower is better)
Translates to: CSKKEISISRVDRLDLVTGGIEM*CPVHQQ
Trigger: CTGCTGATGAACCGGGCACCACATTTCAATACCCCC...AGTAACCAGATCTAGTCGATCAACTCTGGAGATAGAAATCTCCTTTTTACTGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CAA 72 bp GTCATTGTATTACAGTCCAGAAGACAATGTGGTAATTaGCTTAGCTCTAAATGGGCAGGAGACGGAGGTCTG +
Preference number: 4 (lower is better)
Translates to: VIVLQSRRQCGN*LSSKWAGDGGL
Trigger: CAGACCTCCGTCTCCTGCCCATTTAGAGCTAAGCAAATTACCACATTGTCTTCTGGACTGTAATACAATGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CAA 72 bp AACACTCACACAGAGCGCAAACTCGGCATGCATATTTaGAAATGGAAAACTGCATTGTTGCTCTCTGTGTGC +
Preference number: 4 (lower is better)
Translates to: NTHTERKLGMHI*KWKTALLLSVC
Trigger: GCACACAGAGAGCAACAATGCAGTTTTCCATTTCAAAATATGCATGCCGAGTTTGCGCTCTGTGTGAGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR GCA 90 bp AACTCATCAGAGTTTCAAAGCAATAGGTGCCATTGGGAAATTCAGGTTGCATCATCCTCCAGACTGTTCTaGAGTGCACATGCTCATGAT +
Preference number: 4 (lower is better)
Translates to: NSSEFQSNRCHWEIQVASSSRLF*SAHAHD
Trigger: ATCATGAGCATGTGCACTGCAGAACAGTCTGGAGGA...TGATGCAACCTGAATTTCCCAATGGCACCTATTGCTTTGAAACTCTGATGAGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp ACAACAACTCCAATGGAGCTGAAGATAGTGCAAACTTCTGTCTTCACTGTTGAGGGATTTTCCCACACTTaGCATCTCTCAGCTCACATT +
Preference number: 4 (lower is better)
Translates to: TTTPMELKIVQTSVFTVEGFSHT*HLSAHI
Trigger: AATGTGAGCTGAGAGATGCCAAGTGTGGGAAAATCC...CTCAACAGTGAAGACAGAAGTTTGCACTATCTTCAGCTCCATTGGAGTTGTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CCA 90 bp TGCCATGAGAAGAGCATTCCACGTGGTTATAGCTTTTGCAAGCATATGGATTCTCAGTGGGCTTCACAGTaGCAATTCTTCCTGTTGTTA +
Preference number: 4 (lower is better)
Translates to: CHEKSIPRGYSFCKHMDSQWASQ*QFFLLL
Trigger: TAACAACAGGAAGAATTGCCACTGTGAAGCCCACTG...AGAATCCATATGCTTGCAAAAGCTATAACCACGTGGAATGCTCTTCTCATGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CAA 72 bp GTGTTTAAAAACCAGTTCTTGGGACTGCTGGGAGTATaGGTGTTTCTTAGTCTGGGTCATTTGTGTATGGCT +
Preference number: 4 (lower is better)
Translates to: VFKNQFLGLLGV*VFLSLGHLCMA
Trigger: AGCCATACACAAATGACCCAGACTAAGAAACACCAATACTCCCAGCAGTCCCAAGAACTGGTTTTTAAACAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CAA 72 bp CCTCTTCTACTTGTCATAGTGTTTAAAAACCAGTTCTaGGGACTGCTGGGAGTATTGGTGTTTCTTAGTCTG +
Preference number: 4 (lower is better)
Translates to: PLLLVIVFKNQF*GLLGVLVFLSL
Trigger: CAGACTAAGAAACACCAATACTCCCAGCAGTCCCAAGAACTGGTTTTTAAACACTATGACAAGTAGAAGAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp ATTGTTGCTCTCTGTGTGCTGGGAAAACAGACTCAGGACTATTGTAGGTCTGAGGGATATTTGTTTCTATaGAAACAGCATTGGTACCAA +
Preference number: 4 (lower is better)
Translates to: IVALCVLGKQTQDYCRSEGYLFL*KQHWYQ
Trigger: TTGGTACCAATGCTGTTTCCATAGAAACAAATATCC...CTCAGACCTACAATAGTCCTGAGTCTGTTTTCCCAGCACACAGAGAGCAACAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
3UTR CAA 72 bp AAACTACCCTCTGTCAAAGAACCCTCATGCTGGCTATaGGGTCCCAATTTTGTTAAAATTGAAGTTACTGCT +
Preference number: 4 (lower is better)
Translates to: KLPSVKEPSCWL*GPNFVKIEVTA
Trigger: AGCAGTAACTTCAATTTTAACAAAATTGGGACCCAATAGCCAGCATGAGGGTTCTTTGACAGAGGGTAGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CCA 90 bp TGCCATGAGAAGAGCATTCCACGTGGTTATAGCTTTTGCAAGCATATGGATTCTGGATATTTGTTTCTATaGAAACAGCATTGGTACCAA +
Preference number: 4 (lower is better)
Translates to: CHEKSIPRGYSFCKHMDSGYLFL*KQHWYQ
Trigger: TTGGTACCAATGCTGTTTCCATAGAAACAAATATCC...AGAATCCATATGCTTGCAAAAGCTATAACCACGTGGAATGCTCTTCTCATGGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
3UTR CAA 72 bp TACAGAAATTTTGTATGCATCTCAGTGGCAGCAATATaGTCTCTGTGCCACAAAAAGAGGCATGTCATAAGA +
Preference number: 4 (lower is better)
Translates to: YRNFVCISVAAI*SLCHKKRHVIR
Trigger: TCTTATGACATGCCTCTTTTTGTGGCACAGAGACAATATTGCTGCCACTGAGATGCATACAAAATTTCTGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS TCA 90 bp GGGTGCACGTGGGGTCTGGTGGAGAGGCAGGAGCACTCGCTGAGGTaGCTGAAGCTGTGGGACGGCTCGAGCGTCGAGGGGCCTGCTGAT +
Preference number: 5 (lower is better)
Translates to: GCTWGLVERQEHSLR*LKLWDGSSVEGPAD
Trigger: ATCAGCAGGCCCCTCGACGCTCGAGCCGTCCCACAGCTTCAGTCACCTCAGCGAGTGCTCCTGCCTCTCCACCAGACCCCACGTGCACCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 90 bp GGCCTTTCCCGGGGGTGTGGTGAGCCTGGCCAAGGTGAGGGCCACTaGGTGTCCGGGAAGGGTGCACACACCTTAGCTTTTCCATGGTGG +
Preference number: 5 (lower is better)
Translates to: GLSRGCGEPGQGEGH*VSGKGAHTLAFPWW
Trigger: CCACCATGGAAAAGCTAAGGTGTGTGCACCCTTCCCGGACACCCAGTGGCCCTCACCTTGGCCAGGCTCACCACACCCCCGGGAAAGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS TCA 90 bp AGGTCTCGGCTCTCCAGCTGCAGTTGCACAGTCAGCACGTCTGGATaGTCCTTGGCTGGGATGCTCTGTCCTGGGATCCCAGGGTCCTTG +
Preference number: 5 (lower is better)
Translates to: RSRLSSCSCTVSTSG*SLAGMLCPGIPGSL
Trigger: CAAGGACCCTGGGATCCCAGGACAGAGCATCCCAGCCAAGGATCATCCAGACGTGCTGACTGTGCAACTGCAGCTGGAGAGCCGAGACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067680.11
ENSMUST00000127524.2
ENSMUST00000134504.8
CDS TCA 90 bp GTGAGCCGAGAAGTCCTGCTCAGTGGATCAGCAGGCAGAGGCTTCTaGGGAGGACTGGGTTTTCGAATGCCCTGGGCCTGCCTGACTGCA +
Preference number: 5 (lower is better)
Translates to: VSREVLLSGSAGRGF*GGLGFRMPWACLTA
Trigger: TGCAGTCAGGCAGGCCCAGGGCATTCGAAAACCCAGTCCTCCTCAGAAGCCTCTGCCTGCTGATCCACTGAGCAGGACTTCTCGGCTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS GCA 90 bp GCTGCAGTTGCACAGTCAGCACGTCTGGATGATCCTTGGCTGGGATaGTCTGTCCTGGGATCCCAGGGTCCTTGCTCAGAAGGGAGGCTC +
Preference number: 5 (lower is better)
Translates to: AAVAQSARLDDPWLG*SVLGSQGPCSEGRL
Trigger: GAGCCTCCCTTCTGAGCAAGGACCCTGGGATCCCAGGACAGAGCATCCCAGCCAAGGATCATCCAGACGTGCTGACTGTGCAACTGCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067680.11
ENSMUST00000127524.2
ENSMUST00000134504.8
CDS CCA 90 bp GATCAGGTCTCGGCTCTCCAGCTGCAGTTGCACAGTCAGCACGTCTaGATGATCCTTGGCTGGGATGCTCTGTCCTGGGATCCCAGGGTC +
Preference number: 5 (lower is better)
Translates to: DQVSALQLQLHSQHV*MILGWDALSWDPRV
Trigger: GACCCTGGGATCCCAGGACAGAGCATCCCAGCCAAGGATCATCCAGACGTGCTGACTGTGCAACTGCAGCTGGAGAGCCGAGACCTGATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067680.11
ENSMUST00000127524.2
ENSMUST00000134504.8
CDS GCA 90 bp GAATGGGAACCCCGTGGACGGGTTCATGATGCAGCCTCCTTTCTCTaGGGCCATTCTGCAGCTGCAGCCCCTCTCCAGTGTGTCATGGTT +
Preference number: 5 (lower is better)
Translates to: EWEPRGRVHDAASFL*GHSAAAAPLQCVMV
Trigger: AACCATGACACACTGGAGAGGGGCTGCAGCTGCAGAATGGCCGCAGAGAAAGGAGGCTGCATCATGAACCCGTCCACGGGGTTCCCATTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS GCA 90 bp AGTGAGGGGCAGTCCCTGTGCAGAATTCTGGGAGGTCACAGGAGTTaGTGGAGCCCCTGCATGCAGTTCCTGGAGGCTTCAGCTGACAGT +
Preference number: 5 (lower is better)
Translates to: SEGQSLCRILGGHRS*WSPCMQFLEASADS
Trigger: ACTGTCAGCTGAAGCCTCCAGGAACTGCATGCAGGGGCTCCAGCAACTCCTGTGACCTCCCAGAATTCTGCACAGGGACTGCCCCTCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 90 bp CTCCAGCTGCAGTTGCACAGTCAGCACGTCTGGATGATCCTTGGCTaGGATGCTCTGTCCTGGGATCCCAGGGTCCTTGCTCAGAAGGGA +
Preference number: 5 (lower is better)
Translates to: LQLQLHSQHVWMILG*DALSWDPRVLAQKG
Trigger: TCCCTTCTGAGCAAGGACCCTGGGATCCCAGGACAGAGCATCCCAGCCAAGGATCATCCAGACGTGCTGACTGTGCAACTGCAGCTGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067680.11
ENSMUST00000127524.2
ENSMUST00000134504.8
CDS CCA 90 bp GGCTCTCCAGCTGCAGTTGCACAGTCAGCACGTCTGGATGATCCTTaGCTGGGATGCTCTGTCCTGGGATCCCAGGGTCCTTGCTCAGAA +
Preference number: 5 (lower is better)
Translates to: GSPAAVAQSARLDDP*LGCSVLGSQGPCSE
Trigger: TTCTGAGCAAGGACCCTGGGATCCCAGGACAGAGCATCCCAGCCAAGGATCATCCAGACGTGCTGACTGTGCAACTGCAGCTGGAGAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067680.11
ENSMUST00000127524.2
ENSMUST00000134504.8
CDS CCA 90 bp GAGGGGCAGTCCCTGTGCAGAATTCTGGGAGGTCACAGGAGTTGCTaGAGCCCCTGCATGCAGTTCCTGGAGGCTTCAGCTGACAGTCTT +
Preference number: 5 (lower is better)
Translates to: EGQSLCRILGGHRSC*SPCMQFLEASADSL
Trigger: AAGACTGTCAGCTGAAGCCTCCAGGAACTGCATGCAGGGGCTCCAGCAACTCCTGTGACCTCCCAGAATTCTGCACAGGGACTGCCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 90 bp GCAAGCACAAGCCCTGGGTCTGGCATGTCATCACCCAAGTACACATaGGTCCCCCGGCACAGAATCCGACCTCCTTCCTGCTGTGGGATA +
Preference number: 5 (lower is better)
Translates to: ASTSPGSGMSSPKYT*VPRHRIRPPSCCGI
Trigger: TATCCCACAGCAGGAAGGAGGTCGGATTCTGTGCCGGGGGACCCATGTGTACTTGGGTGATGACATGCCAGACCCAGGGCTTGTGCTTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CAA 90 bp AGAGGAAAGAGCTGCAAGTGGCTGGGCGCCCTACTGCCCAGCCATCGTCCTCCTTGGCAATTCTTCCTGTaGTTACATACCCCTCGGCCG +
Preference number: 5 (lower is better)
Translates to: RGKSCKWLGALLPSHRPPWQFFL*LHTPRP
Trigger: CGGCCGAGGGGTATGTAACAACAGGAAGAATTGCCA...AGGAGGACGATGGCTGGGCAGTAGGGCGCCCAGCCACTTGCAGCTCTTTCCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS GCA 90 bp TGTGCAGAATTCTGGGAGGTCACAGGAGTTGCTGGAGCCCCTGCATaGAGTTCCTGGAGGCTTCAGCTGACAGTCTTCACAGCACTGCCC +
Preference number: 5 (lower is better)
Translates to: CAEFWEVTGVAGAPA*SSWRLQLTVFTALP
Trigger: GGGCAGTGCTGTGAAGACTGTCAGCTGAAGCCTCCAGGAACTGCATGCAGGGGCTCCAGCAACTCCTGTGACCTCCCAGAATTCTGCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS GCA 90 bp GCGTCGAGGGGCCTGCTGATGTCCATGTTCTGGCATTTCAGCGAGTaGCTGTCCTTGGGGGTATTGAAATGTGGTGCCCGGTTCATCAGC +
Preference number: 5 (lower is better)
Translates to: ASRGLLMSMFWHFSE*LSLGVLKCGARFIS
Trigger: GCTGATGAACCGGGCACCACATTTCAATACCCCCAAGGACAGGCACTCGCTGAAATGCCAGAACATGGACATCAGCAGGCCCCTCGACGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 90 bp CAGCTGACAGTCTTCACAGCACTGCCCGTGCGCGCACACAGCATCTaGCTTCAGAGTACAGGTGGTAGCGTTACAGCAGCGATTCGTGCA +
Preference number: 5 (lower is better)
Translates to: QLTVFTALPVRAHSI*LQSTGGSVTAAIRA
Trigger: TGCACGAATCGCTGCTGTAACGCTACCACCTGTACTCTGAAGCCAGATGCTGTGTGCGCGCACGGGCAGTGCTGTGAAGACTGTCAGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CAA 90 bp CAGAGAGAAGCCCCTGCCAGCTCTCAAAGCAGAGCCTTGTGCAGCACCTCAGCCGTCTCCGTGAAGCCATaGGCAATGAGTCCCTCATTC +
Preference number: 5 (lower is better)
Translates to: QREAPASSQSRALCSTSAVSVKP*AMSPSF
Trigger: GAATGAGGGACTCATTGCCAATGGCTTCACGGAGAC...GGCTGAGGTGCTGCACAAGGCTCTGCTTTGAGAGCTGGCAGGGGCTTCTCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CAA 90 bp GGTTCTCCCTGGGGTGTCCTGAGCTGTGTGTCTGGTACCATAACAGCCTTGGGATGGTTCATCCCGAAGTaGTGGCCCAGCTCATGTGCC +
Preference number: 5 (lower is better)
Translates to: GSPWGVLSCVSGTITALGWFIPK*WPSSCA
Trigger: GGCACATGAGCTGGGCCACAACTTCGGGATGAACCA...TCCCAAGGCTGTTATGGTACCAGACACACAGCTCAGGACACCCCAGGGAGAACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CAA 90 bp GACCTGAAGGCCATTAGCATGCAGTGGCCCAAGACCTTCCTGAAGGCCCTGGCTTTCCTTCTGCACACTTaGTTCCTGCAAGCACAAGCC +
Preference number: 5 (lower is better)
Translates to: DLKAISMQWPKTFLKALAFLLHT*FLQAQA
Trigger: GGCTTGTGCTTGCAGGAACAAAGTGTGCAGAAGGAA...AGCCAGGGCCTTCAGGAAGGTCTTGGGCCACTGCATGCTAATGGCCTTCAGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 90 bp GCAGATTTTTCCTTCTGCACACTTTGTTCCTGCAAGCACAAGCCCTaGGTCTGGCATGTCATCACCCAAGTACACATGGGTCCCCCGGCA +
Preference number: 5 (lower is better)
Translates to: ADFSFCTLCSCKHKP*VWHVITQVHMGPPA
Trigger: TGCCGGGGGACCCATGTGTACTTGGGTGATGACATGCCAGACCCAGGGCTTGTGCTTGCAGGAACAAAGTGTGCAGAAGGAAAAATCTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CAA 90 bp GCTGGTAAGGCACCATCGGCATCCTTAGTGGACACTGGGGAGATGGCAGAAGATGGATCTCCTGCAGAGTaGACTCGCTCAAAGCAGATG +
Preference number: 5 (lower is better)
Translates to: AGKAPSASLVDTGEMAEDGSPAE*TRSKQM
Trigger: CATCTGCTTTGAGCGAGTCAACTCTGCAGGAGATCC...ATCTTCTGCCATCTCCCCAGTGTCCACTAAGGATGCCGATGGTGCCTTACCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS GCA 90 bp GAAGGCGCTCTTGGAGTCTTTGCCACAGTTACCATAAGGATCTCCTaGAGAGTTGACTCGCTCAAAGCAGATGCCAGGAGCCGGTTTAGC +
Preference number: 5 (lower is better)
Translates to: EGALGVFATVTIRIS*RVDSLKADARSRFS
Trigger: GCTAAACCGGCTCCTGGCATCTGCTTTGAGCGAGTCAACTCTGCAGGAGATCCTTATGGTAACTGTGGCAAAGACTCCAAGAGCGCCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CAA 90 bp GACTGCTGTCATTTACCTTCTGTCGTGAAAGCTAGTCATCCTACGCCCCATCTGTGGTTCATCCCGAAGTaGTGGCCCAGCTCATGTGCC +
Preference number: 5 (lower is better)
Translates to: DCCHLPSVVKASHPTPHLWFIPK*WPSSCA
Trigger: GGCACATGAGCTGGGCCACAACTTCGGGATGAACCA...CAGATGGGGCGTAGGATGACTAGCTTTCACGACAGAAGGTAAATGACAGCAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CAA 90 bp GTAATTTGCTTAGCTCTAAATGGGCAGGAGACGGAGGTCTGCAGTGCCCAGGCATTGGCGAAGGCGCTCTaGGAGTCTTTGCCACAGTTA +
Preference number: 5 (lower is better)
Translates to: VICLALNGQETEVCSAQALAKAL*ESLPQL
Trigger: TAACTGTGGCAAAGACTCCAAGAGCGCCTTCGCCAA...TGCCTGGGCACTGCAGACCTCCGTCTCCTGCCCATTTAGAGCTAAGCAAATTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS GCA 90 bp ACACAGGATGCTCACCAGGATTCCTACAGTCAAGCCCTGGTTATCTaGTTGCCTGATGGGACCACTGTCTGTGCTTCCTCCAAAGCCAAA +
Preference number: 5 (lower is better)
Translates to: TQDAHQDSYSQALVI*LPDGTTVCASSKAK
Trigger: TTTGGCTTTGGAGGAAGCACAGACAGTGGTCCCATCAGGCAAGCAGATAACCAGGGCTTGACTGTAGGAATCCTGGTGAGCATCCTGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 90 bp GTACACATGGGTCCCCCGGCACAGAATCCGACCTCCTTCCTGCTGTaGGATATTTGTTTCTATGGAAACAGCATTGGTACCAATGACAGG +
Preference number: 5 (lower is better)
Translates to: VHMGPPAQNPTSFLL*DICFYGNSIGTNDR
Trigger: CCTGTCATTGGTACCAATGCTGTTTCCATAGAAACAAATATCCCACAGCAGGAAGGAGGTCGGATTCTGTGCCGGGGGACCCATGTGTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CAA 90 bp GGCATAAAAATGTCTCCTCAGAGACCAGTCAGGAGGATTTCTTCCCGTAGAATTGCTCTCCAGCTGCAGTaGCACAGTCAGCACGTCTGG +
Preference number: 5 (lower is better)
Translates to: GIKMSPQRPVRRISSRRIALQLQ*HSQHVW
Trigger: CCAGACGTGCTGACTGTGCAACTGCAGCTGGAGAGC...AATTCTACGGGAAGAAATCCTCCTGACTGGTCTCTGAGGAGACATTTTTATGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CAA 90 bp GTAATTTGCTTAGCTCTAAATGGGCAGGAGACGGAGGTCTGCAGTGCCCAGGCAGACATCAGTACCATCTaGCAGATAATGGGTCTCCGT +
Preference number: 5 (lower is better)
Translates to: VICLALNGQETEVCSAQADISTI*QIMGLR
Trigger: ACGGAGACCCATTATCTGCAAGATGGTACTGATGTC...TGCCTGGGCACTGCAGACCTCCGTCTCCTGCCCATTTAGAGCTAAGCAAATTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CAA 90 bp TGTACTCCACAAAAGGCATGGAAATGGTACATTCATATGTGTGCCCATGTCTCCCCTTCTTGCCCGCATTaGAGAGGTTCCAGGGGAGAC +
Preference number: 5 (lower is better)
Translates to: CTPQKAWKWYIHMCAHVSPSCPH*RGSRGD
Trigger: GTCTCCCCTGGAACCTCTCAAATGCGGGCAAGAAGG...GGAGACATGGGCACACATATGAATGTACCATTTCCATGCCTTTTGTGGAGTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CAA 90 bp TTTGGGTGCTTTGTCCAATGGCTACTAATAAGGATACCAGACTCAGGCTGTGCCTTGGCGAAGGCGCTCTaGGAGTCTTTGCCACAGTTA +
Preference number: 5 (lower is better)
Translates to: FGCFVQWLLIRIPDSGCALAKAL*ESLPQL
Trigger: TAACTGTGGCAAAGACTCCAAGAGCGCCTTCGCCAA...GGCACAGCCTGAGTCTGGTATCCTTATTAGTAGCCATTGGACAAAGCACCCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CAA 90 bp AAAACACAAAGCGGGCCTCAGAGGAAAGAGCTGCAAGTGGCTGGGCGCCCTACTATCAACGTCTTCCTTTaGAGATACACCACAAATCCA +
Preference number: 5 (lower is better)
Translates to: KTQSGPQRKELQVAGRPTINVFL*RYTTNP
Trigger: TGGATTTGTGGTGTATCTCAAAAGGAAGACGTTGAT...AGTAGGGCGCCCAGCCACTTGCAGCTCTTTCCTCTGAGGCCCGCTTTGTGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CAA 90 bp TCAGACGAGGTAGAGGACTGCTGTCATTTACCTTCTGTCGTGAAAGCTAGTCATTCGGCTTGCACCACCTaGACACTGGATTTTCCCACA +
Preference number: 5 (lower is better)
Translates to: SDEVEDCCHLPSVVKASHSACTT*TLDFPT
Trigger: TGTGGGAAAATCCAGTGTCAAGGTGGTGCAAGCCGA...ATGACTAGCTTTCACGACAGAAGGTAAATGACAGCAGTCCTCTACCTCGTCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CAA 90 bp CTGAAAGAGCAGAGGGAAAGAGTTGCCTGGCTGAGGTTGCCTTTCGTGAGCAACCCTGCTGTGGGATATTaGTTTCTATGGAAACAGCAT +
Preference number: 5 (lower is better)
Translates to: LKEQRERVAWLRLPFVSNPAVGY*FLWKQH
Trigger: ATGCTGTTTCCATAGAAACAAATATCCCACAGCAGG...GTTGCTCACGAAAGGCAACCTCAGCCAGGCAACTCTTTCCCTCTGCTCTTTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CAA 90 bp GTGATGTCATCCCATATGTGTAACCTGGAAACACTCACACAGAGCGCAAACTCGTTCCTTCTGCACACTTaGTTCCTGCAAGCACAAGCC +
Preference number: 5 (lower is better)
Translates to: VMSSHMCNLETLTQSANSFLLHT*FLQAQA
Trigger: GGCTTGTGCTTGCAGGAACAAAGTGTGCAGAAGGAA...CGAGTTTGCGCTCTGTGTGAGTGTTTCCAGGTTACACATATGGGATGACATCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CAA 90 bp TTGCTTCTGAAGGTAGCTTCCCAGTCACATACTGAAAGAGCAGAGGGAAAGAGTTGGCAATTCTTCCTGTaGTTACATACCCCTCGGCCG +
Preference number: 5 (lower is better)
Translates to: LLLKVASQSHTERAEGKSWQFFL*LHTPRP
Trigger: CGGCCGAGGGGTATGTAACAACAGGAAGAATTGCCA...ACTCTTTCCCTCTGCTCTTTCAGTATGTGACTGGGAAGCTACCTTCAGAAGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CAA 90 bp TTTGGGTGCTTTGTCCAATGGCTACTAATAAGGATACCAGACTCAGGCTGTGCCTGGATTTTCCCACACTaGGCATCTCTCAGCTCACAT +
Preference number: 5 (lower is better)
Translates to: FGCFVQWLLIRIPDSGCAWIFPH*ASLSSH
Trigger: ATGTGAGCTGAGAGATGCCAAGTGTGGGAAAATCCA...GGCACAGCCTGAGTCTGGTATCCTTATTAGTAGCCATTGGACAAAGCACCCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 90 bp ATCTTTCTCCAGTCTAGAAACTCATGGAGGCTGGTGAATGGGTCCTaGCTTATAGAGCATTTGTCGATGTCATTCCACACTTCCACTCCT +
Preference number: 5 (lower is better)
Translates to: IFLQSRNSWRLVNGS*LIEHLSMSFHTSTP
Trigger: AGGAGTGGAAGTGTGGAATGACATCGACAAATGCTCTATAAGCCAGGACCCATTCACCAGCCTCCATGAGTTTCTAGACTGGAGAAAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CAA 90 bp TTGTTGCTCTCTGTGTGCTGGGAAAACAGACTCAGGACTATTGTAGGTCTGAGACTCCAGGTCTTTTCCTaGCCTCTGAAACTCTCTGTT +
Preference number: 5 (lower is better)
Translates to: LLLSVCWENRLRTIVGLRLQVFS*PLKLSV
Trigger: AACAGAGAGTTTCAGAGGCAAGGAAAAGACCTGGAG...TCTCAGACCTACAATAGTCCTGAGTCTGTTTTCCCAGCACACAGAGAGCAACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CAA 90 bp GACTGCTGTCATTTACCTTCTGTCGTGAAAGCTAGTCATCCTACGCCCCATCTGTGGCTTATAGAGCATTaGTCGATGTCATTCCACACT +
Preference number: 5 (lower is better)
Translates to: DCCHLPSVVKASHPTPHLWLIEH*SMSFHT
Trigger: AGTGTGGAATGACATCGACAAATGCTCTATAAGCCA...CAGATGGGGCGTAGGATGACTAGCTTTCACGACAGAAGGTAAATGACAGCAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CAA 90 bp TCAGACGAGGTAGAGGACTGCTGTCATTTACCTTCTGTCGTGAAAGCTAGTCATTGGATTTTCCCACACTaGGCATCTCTCAGCTCACAT +
Preference number: 5 (lower is better)
Translates to: SDEVEDCCHLPSVVKASHWIFPH*ASLSSH
Trigger: ATGTGAGCTGAGAGATGCCAAGTGTGGGAAAATCCA...ATGACTAGCTTTCACGACAGAAGGTAAATGACAGCAGTCCTCTACCTCGTCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CAA 90 bp TGCCATGAGAAGAGCATTCCACGTGGTTATAGCTTTTGCAAGCATATGGATTCTTCGGCTTGCACCACCTaGACACTGGATTTTCCCACA +
Preference number: 5 (lower is better)
Translates to: CHEKSIPRGYSFCKHMDSSACTT*TLDFPT
Trigger: TGTGGGAAAATCCAGTGTCAAGGTGGTGCAAGCCGA...AGAATCCATATGCTTGCAAAAGCTATAACCACGTGGAATGCTCTTCTCATGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CAA 90 bp CAAGCAGGGTATTTCAAGTCCTCCAGAAAAACAAAAGCACGAGGAGCCTTCCTTTCTATGGAAACAGCATaGGTACCAATGACAGGTCGG +
Preference number: 5 (lower is better)
Translates to: QAGYFKSSRKTKARGAFLSMETA*VPMTGR
Trigger: CCGACCTGTCATTGGTACCAATGCTGTTTCCATAGA...AAGGAAGGCTCCTCGTGCTTTTGTTTTTCTGGAGGACTTGAAATACCCTGCTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CAA 90 bp GATCTTAAAGCAGTCAGACGAGGTAGAGGACTGCTGTCATTTACCTTCTGTCGTTCTATGGAAACAGCATaGGTACCAATGACAGGTCGG +
Preference number: 5 (lower is better)
Translates to: DLKAVRRGRGLLSFTFCRSMETA*VPMTGR
Trigger: CCGACCTGTCATTGGTACCAATGCTGTTTCCATAGA...ACGACAGAAGGTAAATGACAGCAGTCCTCTACCTCGTCTGACTGCTTTAAGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 90 bp GATTTTCGAGGTAGAAGCTTTATCTTTCTCCAGTCTAGAAACTCATaGAGGCTGGTGAATGGGTCCTGGCTTATAGAGCATTTGTCGATG +
Preference number: 5 (lower is better)
Translates to: DFRGRSFIFLQSRNS*RLVNGSWLIEHLSM
Trigger: CATCGACAAATGCTCTATAAGCCAGGACCCATTCACCAGCCTCCATGAGTTTCTAGACTGGAGAAAGATAAAGCTTCTACCTCGAAAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS-3UTR CAA 90 bp TGCAGTAAAAAGGAGATTTCTATCTCCAGAGTTGATCGACTAGATCTGGTTACTGGATCTCCTGCAGAGTaGACTCGCTCAAAGCAGATG +
Preference number: 5 (lower is better)
Translates to: CSKKEISISRVDRLDLVTGSPAE*TRSKQM
Trigger: CATCTGCTTTGAGCGAGTCAACTCTGCAGGAGATCC...AGTAACCAGATCTAGTCGATCAACTCTGGAGATAGAAATCTCCTTTTTACTGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CAA 90 bp TTGCTTCTGAAGGTAGCTTCCCAGTCACATACTGAAAGAGCAGAGGGAAAGAGTATCAACGTCTTCCTTTaGAGATACACCACAAATCCA +
Preference number: 5 (lower is better)
Translates to: LLLKVASQSHTERAEGKSINVFL*RYTTNP
Trigger: TGGATTTGTGGTGTATCTCAAAAGGAAGACGTTGAT...ACTCTTTCCCTCTGCTCTTTCAGTATGTGACTGGGAAGCTACCTTCAGAAGCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS-3UTR CAA 90 bp ACAACAACTCCAATGGAGCTGAAGATAGTGCAAACTTCTGTCTTCACTGTTGAGCCTGCTGTGGGATATTaGTTTCTATGGAAACAGCAT +
Preference number: 5 (lower is better)
Translates to: TTTPMELKIVQTSVFTVEPAVGY*FLWKQH
Trigger: ATGCTGTTTCCATAGAAACAAATATCCCACAGCAGG...CTCAACAGTGAAGACAGAAGTTTGCACTATCTTCAGCTCCATTGGAGTTGTTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 72 bp CGGGGGTGTGGTGAGCCTGGCCAAGGTGAGGGCCACTaGGTGTCCGGGAAGGGTGCACACACCTTAGCTTTT +
Preference number: 6 (lower is better)
Translates to: RGCGEPGQGEGH*VSGKGAHTLAF
Trigger: AAAAGCTAAGGTGTGTGCACCCTTCCCGGACACCCAGTGGCCCTCACCTTGGCCAGGCTCACCACACCCCCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CAA 90 bp CTGCAGCTGCAGCCCCTCTCCAGTGTGTCATGGTTCATCCCGAAGTaGTGGCCCAGCTCATGTGCCAAGGTCACTGCGGCACCAAGGGGG +
Preference number: 6 (lower is better)
Translates to: LQLQPLSSVSWFIPK*WPSSCAKVTAAPRG
Trigger: CCCCCTTGGTGCCGCAGTGACCTTGGCACATGAGCTGGGCCACAACTTCGGGATGAACCATGACACACTGGAGAGGGGCTGCAGCTGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS GCA 72 bp CCCCGTGGACGGGTTCATGATGCAGCCTCCTTTCTCTaGGGCCATTCTGCAGCTGCAGCCCCTCTCCAGTGT +
Preference number: 6 (lower is better)
Translates to: PRGRVHDAASFL*GHSAAAAPLQC
Trigger: ACACTGGAGAGGGGCTGCAGCTGCAGAATGGCCGCAGAGAAAGGAGGCTGCATCATGAACCCGTCCACGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS GCA 72 bp CAGCGAGTGCCTGTCCTTGGGGGTATTGAAATGTGGTaGCCGGTTCATCAGCAGGCCTTTCCCGGGGGTGTG +
Preference number: 6 (lower is better)
Translates to: QRVPVLGGIEMW*PVHQQAFPGGV
Trigger: CACACCCCCGGGAAAGGCCTGCTGATGAACCGGGCACCACATTTCAATACCCCCAAGGACAGGCACTCGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 72 bp AGCCCTGGGTCTGGCATGTCATCACCCAAGTACACATaGGTCCCCCGGCACAGAATCCGACCTCCTTCCTGC +
Preference number: 6 (lower is better)
Translates to: SPGSGMSSPKYT*VPRHRIRPPSC
Trigger: GCAGGAAGGAGGTCGGATTCTGTGCCGGGGGACCCATGTGTACTTGGGTGATGACATGCCAGACCCAGGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CAA 90 bp TTTCCACACTTCCGGCCCCCAAAGGCCTGCTTGACCTCTGGTAGGTaGAAGAGGCACATCCCCATGCCCTTCTCCAGGCTAGCCTCCAGG +
Preference number: 6 (lower is better)
Translates to: FPHFRPPKACLTSGR*KRHIPMPFSRLASR
Trigger: CCTGGAGGCTAGCCTGGAGAAGGGCATGGGGATGTGCCTCTTCAACCTACCAGAGGTCAAGCAGGCCTTTGGGGGCCGGAAGTGTGGAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS TCA 72 bp ACACCATGGGGAATGGGAACCCCGTGGACGGGTTCATaGTGCAGCCTCCTTTCTCTGCGGCCATTCTGCAGC +
Preference number: 6 (lower is better)
Translates to: TPWGMGTPWTGS*CSLLSLRPFCS
Trigger: GCTGCAGAATGGCCGCAGAGAAAGGAGGCTGCATCATGAACCCGTCCACGGGGTTCCCATTCCCCATGGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS TCA 72 bp GAAGTCCTGCTCAGTGGATCAGCAGGCAGAGGCTTCTaGGGAGGACTGGGTTTTCGAATGCCCTGGGCCTGC +
Preference number: 6 (lower is better)
Translates to: EVLLSGSAGRGF*GGLGFRMPWAC
Trigger: GCAGGCCCAGGGCATTCGAAAACCCAGTCCTCCTCAGAAGCCTCTGCCTGCTGATCCACTGAGCAGGACTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 72 bp GCTGCAGTTGCACAGTCAGCACGTCTGGATGATCCTTaGCTGGGATGCTCTGTCCTGGGATCCCAGGGTCCT +
Preference number: 6 (lower is better)
Translates to: AAVAQSARLDDP*LGCSVLGSQGP
Trigger: AGGACCCTGGGATCCCAGGACAGAGCATCCCAGCCAAGGATCATCCAGACGTGCTGACTGTGCAACTGCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067680.11
ENSMUST00000127524.2
ENSMUST00000134504.8
CDS CCA 72 bp GTCTTCACAGCACTGCCCGTGCGCGCACACAGCATCTaGCTTCAGAGTACAGGTGGTAGCGTTACAGCAGCG +
Preference number: 6 (lower is better)
Translates to: VFTALPVRAHSI*LQSTGGSVTAA
Trigger: CGCTGCTGTAACGCTACCACCTGTACTCTGAAGCCAGATGCTGTGTGCGCGCACGGGCAGTGCTGTGAAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 72 bp GCTCGAGCGTCGAGGGGCCTGCTGATGTCCATGTTCTaGCATTTCAGCGAGTGCCTGTCCTTGGGGGTATTG +
Preference number: 6 (lower is better)
Translates to: ARASRGLLMSMF*HFSECLSLGVL
Trigger: CAATACCCCCAAGGACAGGCACTCGCTGAAATGCCAGAACATGGACATCAGCAGGCCCCTCGACGCTCGAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CAA 72 bp TTCCGGCCCCCAAAGGCCTGCTTGACCTCTGGTAGGTaGAAGAGGCACATCCCCATGCCCTTCTCCAGGCTA +
Preference number: 6 (lower is better)
Translates to: FRPPKACLTSGR*KRHIPMPFSRL
Trigger: TAGCCTGGAGAAGGGCATGGGGATGTGCCTCTTCAACCTACCAGAGGTCAAGCAGGCCTTTGGGGGCCGGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS TCA 72 bp CTCTCCAGCTGCAGTTGCACAGTCAGCACGTCTGGATaGTCCTTGGCTGGGATGCTCTGTCCTGGGATCCCA +
Preference number: 6 (lower is better)
Translates to: LSSCSCTVSTSG*SLAGMLCPGIP
Trigger: TGGGATCCCAGGACAGAGCATCCCAGCCAAGGATCATCCAGACGTGCTGACTGTGCAACTGCAGCTGGAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067680.11
ENSMUST00000127524.2
ENSMUST00000134504.8
CDS GCA 72 bp CAGTCCCTGTGCAGAATTCTGGGAGGTCACAGGAGTTaGTGGAGCCCCTGCATGCAGTTCCTGGAGGCTTCA +
Preference number: 6 (lower is better)
Translates to: QSLCRILGGHRS*WSPCMQFLEAS
Trigger: TGAAGCCTCCAGGAACTGCATGCAGGGGCTCCAGCAACTCCTGTGACCTCCCAGAATTCTGCACAGGGACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 72 bp CAGTTGCACAGTCAGCACGTCTGGATGATCCTTGGCTaGGATGCTCTGTCCTGGGATCCCAGGGTCCTTGCT +
Preference number: 6 (lower is better)
Translates to: QLHSQHVWMILG*DALSWDPRVLA
Trigger: AGCAAGGACCCTGGGATCCCAGGACAGAGCATCCCAGCCAAGGATCATCCAGACGTGCTGACTGTGCAACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067680.11
ENSMUST00000127524.2
ENSMUST00000134504.8
CDS CCA 72 bp TCGGCTCTCCAGCTGCAGTTGCACAGTCAGCACGTCTaGATGATCCTTGGCTGGGATGCTCTGTCCTGGGAT +
Preference number: 6 (lower is better)
Translates to: SALQLQLHSQHV*MILGWDALSWD
Trigger: ATCCCAGGACAGAGCATCCCAGCCAAGGATCATCCAGACGTGCTGACTGTGCAACTGCAGCTGGAGAGCCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067680.11
ENSMUST00000127524.2
ENSMUST00000134504.8
CDS CCA 72 bp GCCAAGGTCACTGCGGCACCAAGGGGGCTGTCTGAATaGTCCATGACAACTCCTCCAGACTGTTCTGCAGTG +
Preference number: 6 (lower is better)
Translates to: AKVTAAPRGLSE*SMTTPPDCSAV
Trigger: CACTGCAGAACAGTCTGGAGGAGTTGTCATGGACCATTCAGACAGCCCCCTTGGTGCCGCAGTGACCTTGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS CCA 72 bp TTTCAGCGAGTGCCTGTCCTTGGGGGTATTGAAATGTaGTGCCCGGTTCATCAGCAGGCCTTTCCCGGGGGT +
Preference number: 6 (lower is better)
Translates to: FQRVPVLGGIEM*CPVHQQAFPGG
Trigger: ACCCCCGGGAAAGGCCTGCTGATGAACCGGGCACCACATTTCAATACCCCCAAGGACAGGCACTCGCTGAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS TCA 72 bp TCACTGCGGCACCAAGGGGGCTGTCTGAATGGTCCATaGCAACTCCTCCAGACTGTTCTGCAGTGCACATGC +
Preference number: 6 (lower is better)
Translates to: SLRHQGGCLNGP*QLLQTVLQCTC
Trigger: GCATGTGCACTGCAGAACAGTCTGGAGGAGTTGTCATGGACCATTCAGACAGCCCCCTTGGTGCCGCAGTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS GCA 72 bp GGCCTGCTGATGTCCATGTTCTGGCATTTCAGCGAGTaGCTGTCCTTGGGGGTATTGAAATGTGGTGCCCGG +
Preference number: 6 (lower is better)
Translates to: GLLMSMFWHFSE*LSLGVLKCGAR
Trigger: CCGGGCACCACATTTCAATACCCCCAAGGACAGGCACTCGCTGAAATGCCAGAACATGGACATCAGCAGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS GCA 72 bp GCTCACCAGGATTCCTACAGTCAAGCCCTGGTTATCTaGTTGCCTGATGGGACCACTGTCTGTGCTTCCTCC +
Preference number: 6 (lower is better)
Translates to: AHQDSYSQALVI*LPDGTTVCASS
Trigger: GGAGGAAGCACAGACAGTGGTCCCATCAGGCAAGCAGATAACCAGGGCTTGACTGTAGGAATCCTGGTGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 72 bp TTGTCACAGAAGGGTGGAGCCCAGTGGGCTTCACAGTaGCAATTCTTCCTGTTGTTACATACCCCTCGGCCG +
Preference number: 6 (lower is better)
Translates to: LSQKGGAQWASQ*QFFLLLHTPRP
Trigger: CGGCCGAGGGGTATGTAACAACAGGAAGAATTGCCACTGTGAAGCCCACTGGGCTCCACCCTTCTGTGACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 72 bp CACAGGATGCTCACCAGGATTCCTACAGTCAAGCCCTaGTTATCTGCTTGCCTGATGGGACCACTGTCTGTG +
Preference number: 6 (lower is better)
Translates to: HRMLTRIPTVKP*LSACLMGPLSV
Trigger: CACAGACAGTGGTCCCATCAGGCAAGCAGATAACCAGGGCTTGACTGTAGGAATCCTGGTGAGCATCCTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 72 bp GCCAAGGTCACTGCGGCACCAAGGGGGCTGTCTGAATaGTCCTCAAAGAACAGACGAGAGCAGAGATTTACA +
Preference number: 6 (lower is better)
Translates to: AKVTAAPRGLSE*SSKNRREQRFT
Trigger: TGTAAATCTCTGCTCTCGTCTGTTCTTTGAGGACCATTCAGACAGCCCCCTTGGTGCCGCAGTGACCTTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138363.2
CDS TCA 72 bp GCATTTGAGAGGTTCCAGGGGAGACATCTTCCATGGTaGGGTTGGACTTGTTATGCTGTGACCCACACAGCC +
Preference number: 6 (lower is better)
Translates to: AFERFQGRHLPW*GWTCYAVTHTA
Trigger: GGCTGTGTGGGTCACAGCATAACAAGTCCAACCTCACCATGGAAGATGTCTCCCCTGGAACCTCTCAAATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067680.11
ENSMUST00000127524.2
ENSMUST00000134504.8
CDS TCA 72 bp GGATTCCTACAGTCAAGCCCTGGTTATCTGCTTGCCTaGTGGGACCACTGTCTGTGCTTCCTCCAAAGCCAA +
Preference number: 6 (lower is better)
Translates to: GFLQSSPGYLLA*WDHCLCFLQSQ
Trigger: TTGGCTTTGGAGGAAGCACAGACAGTGGTCCCATCAGGCAAGCAGATAACCAGGGCTTGACTGTAGGAATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS GCA 72 bp GGGGAGACATCTTCCATGGTGAGGTTGGACTTGTTATaGTGTGACCCACACAGCCCTTGGATGTTCGTCATG +
Preference number: 6 (lower is better)
Translates to: GETSSMVRLDLL*CDPHSPWMFVM
Trigger: CATGACGAACATCCAAGGGCTGTGTGGGTCACAGCATAACAAGTCCAACCTCACCATGGAAGATGTCTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067680.11
ENSMUST00000127524.2
ENSMUST00000134504.8
CDS GCA 72 bp ACCAGGATTCCTACAGTCAAGCCCTGGTTATCTGCTTaGCTGATGGGACCACTGTCTGTGCTTCCTCCAAAG +
Preference number: 6 (lower is better)
Translates to: TRIPTVKPWLSA*LMGPLSVLPPK
Trigger: CTTTGGAGGAAGCACAGACAGTGGTCCCATCAGGCAAGCAGATAACCAGGGCTTGACTGTAGGAATCCTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 72 bp TCCTTCTGCACACTTTGTTCCTGCAAGCACAAGCCCTaGGTCTGGCATGTCATCACCCAAGTACACATGGGT +
Preference number: 6 (lower is better)
Translates to: SFCTLCSCKHKP*VWHVITQVHMG
Trigger: ACCCATGTGTACTTGGGTGATGACATGCCAGACCCAGGGCTTGTGCTTGCAGGAACAAAGTGTGCAGAAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CAA 90 bp AGAAACTCATGGAGGCTGGTGAATGGGTCCTGGCTTATAGAGCATTaGTCGATGTCATTCCACACTTCCACTCCTACCAGCACGATCCGG +
Preference number: 6 (lower is better)
Translates to: RNSWRLVNGSWLIEH*SMSFHTSTPTSTIR
Trigger: CCGGATCGTGCTGGTAGGAGTGGAAGTGTGGAATGACATCGACAAATGCTCTATAAGCCAGGACCCATTCACCAGCCTCCATGAGTTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS GCA 72 bp CTTGGAGTCTTTGCCACAGTTACCATAAGGATCTCCTaGAGAGTTGACTCGCTCAAAGCAGATGCCAGGAGC +
Preference number: 6 (lower is better)
Translates to: LGVFATVTIRIS*RVDSLKADARS
Trigger: GCTCCTGGCATCTGCTTTGAGCGAGTCAACTCTGCAGGAGATCCTTATGGTAACTGTGGCAAAGACTCCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 72 bp CCCACACAGCCCTTGGATGTTCGTCATGCTCTCAGCTaGGACGAGTTTGTAGCTGTCAGTGGTGTTTTTCAT +
Preference number: 6 (lower is better)
Translates to: PTQPLDVRHALS*DEFVAVSGVFH
Trigger: ATGAAAAACACCACTGACAGCTACAAACTCGTCCCAGCTGAGAGCATGACGAACATCCAAGGGCTGTGTGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067680.11
ENSMUST00000127524.2
ENSMUST00000134504.8
CDS CCA 72 bp TGGCATCTCTCAGCTCACATTTGGCGAAGGCGCTCTTaGAGTCTTTGCCACAGTTACCATAAGGATCTCCTG +
Preference number: 6 (lower is better)
Translates to: WHLSAHIWRRRS*SLCHSYHKDLL
Trigger: CAGGAGATCCTTATGGTAACTGTGGCAAAGACTCCAAGAGCGCCTTCGCCAAATGTGAGCTGAGAGATGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 72 bp GGATTTTCCCACACTTGGCATCTCTCAGCTCACATTTaGCGAAGGCGCTCTTGGAGTCTTTGCCACAGTTAC +
Preference number: 6 (lower is better)
Translates to: GFSHTWHLSAHI*RRRSWSLCHSY
Trigger: GTAACTGTGGCAAAGACTCCAAGAGCGCCTTCGCCAAATGTGAGCTGAGAGATGCCAAGTGTGGGAAAATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CAA 72 bp TGGAGGCTGGTGAATGGGTCCTGGCTTATAGAGCATTaGTCGATGTCATTCCACACTTCCACTCCTACCAGC +
Preference number: 6 (lower is better)
Translates to: WRLVNGSWLIEH*SMSFHTSTPTS
Trigger: GCTGGTAGGAGTGGAAGTGTGGAATGACATCGACAAATGCTCTATAAGCCAGGACCCATTCACCAGCCTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS GCA 72 bp CTTGGTCATCTTAAGGGTCTCTCTCTTATGCCTTCTTaGCCGCATTTGAGAGGTTCCAGGGGAGACATCTTC +
Preference number: 6 (lower is better)
Translates to: LGHLKGLSLMPS*PHLRGSRGDIF
Trigger: GAAGATGTCTCCCCTGGAACCTCTCAAATGCGGGCAAGAAGGCATAAGAGAGAGACCCTTAAGATGACCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000134504.8
CDS GCA 72 bp GATACACCACAAATCCAGCAGCAAGCAGACACAGGATaGTCACCAGGATTCCTACAGTCAAGCCCTGGTTAT +
Preference number: 6 (lower is better)
Translates to: DTPQIQQQADTG*SPGFLQSSPGY
Trigger: ATAACCAGGGCTTGACTGTAGGAATCCTGGTGAGCATCCTGTGTCTGCTTGCTGCTGGATTTGTGGTGTATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CAA 72 bp TGGATTTTCCCACACTTGGCATCTCTCAGCTCACATTaGGCGAAGGCGCTCTTGGAGTCTTTGCCACAGTTA +
Preference number: 6 (lower is better)
Translates to: WIFPHLASLSSH*AKALLESLPQL
Trigger: TAACTGTGGCAAAGACTCCAAGAGCGCCTTCGCCAAATGTGAGCTGAGAGATGCCAAGTGTGGGAAAATCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CAA 90 bp ACAATGATCCGTGTGATTTCGAGTGAGAGAGACATCAGTACCATCTaGCAGATAATGGGTCTCCGTGAAGCCATTGGCAATGAGTCCCTC +
Preference number: 6 (lower is better)
Translates to: TMIRVISSERDISTI*QIMGLREAIGNESL
Trigger: GAGGGACTCATTGCCAATGGCTTCACGGAGACCCATTATCTGCAAGATGGTACTGATGTCTCTCTCACTCGAAATCACACGGATCATTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067680.11
ENSMUST00000127524.2
ENSMUST00000134504.8
CDS CAA 72 bp CGTGTGATTTCGAGTGAGAGAGACATCAGTACCATCTaGCAGATAATGGGTCTCCGTGAAGCCATTGGCAAT +
Preference number: 6 (lower is better)
Translates to: RVISSERDISTI*QIMGLREAIGN
Trigger: ATTGCCAATGGCTTCACGGAGACCCATTATCTGCAAGATGGTACTGATGTCTCTCTCACTCGAAATCACACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067680.11
ENSMUST00000127524.2
ENSMUST00000134504.8
CDS CAA 72 bp TTATGTGTGAACAGCAGCCGCATCAACGTCTTCCTTTaGAGATACACCACAAATCCAGCAGCAAGCAGACAC +
Preference number: 6 (lower is better)
Translates to: LCVNSSRINVFL*RYTTNPAASRH
Trigger: GTGTCTGCTTGCTGCTGGATTTGTGGTGTATCTCAAAAGGAAGACGTTGATGCGGCTGCTGTTCACACATAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067680.11
ENSMUST00000138363.2
CDS CCA 72 bp GGTAGAAGCTTTATCTTTCTCCAGTCTAGAAACTCATaGAGGCTGGTGAATGGGTCCTGGCTTATAGAGCAT +
Preference number: 6 (lower is better)
Translates to: GRSFIFLQSRNS*RLVNGSWLIEH
Trigger: ATGCTCTATAAGCCAGGACCCATTCACCAGCCTCCATGAGTTTCTAGACTGGAGAAAGATAAAGCTTCTACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11
CDS TCA 72 bp GTCCATGGTAGTAACAATGATCCGTGTGATTTCGAGTaGGAGAGACATCAGTACCATCTTGCAGATAATGGG +
Preference number: 6 (lower is better)
Translates to: VHGSNNDPCDFE*ERHQYHLADNG
Trigger: CCCATTATCTGCAAGATGGTACTGATGTCTCTCTCACTCGAAATCACACGGATCATTGTTACTACCATGGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067680.11
ENSMUST00000127524.2
ENSMUST00000134504.8
CDS CAA 72 bp TCTCTGTTGTCTGCCACAATAACCAGCTCTACGTACTaGGTCATCTTAAGGGTCTCTCTCTTATGCCTTCTT +
Preference number: 6 (lower is better)
Translates to: SLLSATITSSTY*VILRVSLLCLL
Trigger: AAGAAGGCATAAGAGAGAGACCCTTAAGATGACCAAGTACGTAGAGCTGGTTATTGTGGCAGACAACAGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067680.11