RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ADAM11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020926

Ensembl transcript IDs: ENSMUST00000068150.7, ENSMUST00000103081.10

Found 350 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCTGTGGCAGGGTGGAGGCAGCCTCGTGGTTCAGGGCCGAGATGGTaGGTGCCAGGCTCGGAGGGAGCAGGGTGGCACTTAGGCCCCTCC +
Preference number: 1 (lower is better)
Translates to: SVAGWRQPRGSGPRW*VPGSEGAGWHLGPS
Trigger: GGAGGGGCCTAAGTGCCACCCTGCTCCCTCCGAGCCTGGCACCCACCATCTCGGCCCTGAACCACGAGGCTGCCTCCACCCTGCCACAGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR CCA 90 bp CATTTGCACGGTGCCTCCCTCTGTGGCAGGGTGGAGGCAGCCTCGTaGTTCAGGGCCGAGATGGTGGGTGCCAGGCTCGGAGGGAGCAGG +
Preference number: 1 (lower is better)
Translates to: HLHGASLCGRVEAAS*FRAEMVGARLGGSR
Trigger: CCTGCTCCCTCCGAGCCTGGCACCCACCATCTCGGCCCTGAACCACGAGGCTGCCTCCACCCTGCCACAGAGGGAGGCACCGTGCAAATG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CCA 90 bp AGCAGGGCTGCCCTGCCCCAGCTGGGTTCCCTGACAGGATTCGTTTaGGCCTCCCAGGGAGGGATGTGGGAGGTCTCAAGGCCTCGGGCC +
Preference number: 1 (lower is better)
Translates to: SRAALPQLGSLTGFV*ASQGGMWEVSRPRA
Trigger: GGCCCGAGGCCTTGAGACCTCCCACATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAGGGAACCCAGCTGGGGCAGGGCAGCCCTGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR TCA 90 bp GCAGAGGTGGGGCAAGCAGGGCTGCCCTGCCCCAGCTGGGTTCCCTaGCAGGATTCGTTTGGGCCTCCCAGGGAGGGATGTGGGAGGTCT +
Preference number: 1 (lower is better)
Translates to: AEVGQAGLPCPSWVP*QDSFGPPREGCGRS
Trigger: AGACCTCCCACATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAGGGAACCCAGCTGGGGCAGGGCAGCCCTGCTTGCCCCACCTCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CCA 90 bp TCGGACCCGGAAGACATTTGCACGGTGCCTCCCTCTGTGGCAGGGTaGAGGCAGCCTCGTGGTTCAGGGCCGAGATGGTGGGTGCCAGGC +
Preference number: 1 (lower is better)
Translates to: SDPEDICTVPPSVAG*RQPRGSGPRWWVPG
Trigger: GCCTGGCACCCACCATCTCGGCCCTGAACCACGAGGCTGCCTCCACCCTGCCACAGAGGGAGGCACCGTGCAAATGTCTTCCGGGTCCGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR TCA 90 bp GGCCCCTCCGGACCTGGAATGGAGAGAGGGCATCAGGAGAGGACTTaGGGCTGGGCTCTGAGGGTGAGCCCTCTAGTTGCCCCGCTCCTC +
Preference number: 1 (lower is better)
Translates to: GPSGPGMERGHQERT*GWALRVSPLVAPLL
Trigger: GAGGAGCGGGGCAACTAGAGGGCTCACCCTCAGAGCCCAGCCTCAAGTCCTCTCCTGATGCCCTCTCTCCATTCCAGGTCCGGAGGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR CCA 90 bp GCCAGGCTCGGAGGGAGCAGGGTGGCACTTAGGCCCCTCCGGACCTaGAATGGAGAGAGGGCATCAGGAGAGGACTTGAGGCTGGGCTCT +
Preference number: 1 (lower is better)
Translates to: ARLGGSRVALRPLRT*NGERASGEDLRLGS
Trigger: AGAGCCCAGCCTCAAGTCCTCTCCTGATGCCCTCTCTCCATTCCAGGTCCGGAGGGGCCTAAGTGCCACCCTGCTCCCTCCGAGCCTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR TCA 90 bp GAGGCTACATTCACAGGGGGAGACGTGTGCAAGGCCAAAGCCGCATaGGGTGGGATGGGGAACTGGGCAGGAAGCGTCCTCCTCCCGGCC +
Preference number: 1 (lower is better)
Translates to: EATFTGGDVCKAKAA*GGMGNWAGSVLLPA
Trigger: GGCCGGGAGGAGGACGCTTCCTGCCCAGTTCCCCATCCCACCTCATGCGGCTTTGGCCTTGCACACGTCTCCCCCTGTGAATGTAGCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR GCA 90 bp CCCCTGTGCAGCCAGGAGTTGAAGGGTTCGGACCCGGAAGACATTTaGACGGTGCCTCCCTCTGTGGCAGGGTGGAGGCAGCCTCGTGGT +
Preference number: 1 (lower is better)
Translates to: PLCSQELKGSDPEDI*TVPPSVAGWRQPRG
Trigger: ACCACGAGGCTGCCTCCACCCTGCCACAGAGGGAGGCACCGTGCAAATGTCTTCCGGGTCCGAACCCTTCAACTCCTGGCTGCACAGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR TCA 90 bp GGCGATATCACAGTCCCAACCCCCAACCCCTGTGCAGCCAGGAGTTaGAGGGTTCGGACCCGGAAGACATTTGCACGGTGCCTCCCTCTG +
Preference number: 1 (lower is better)
Translates to: GDITVPTPNPCAARS*RVRTRKTFARCLPL
Trigger: CAGAGGGAGGCACCGTGCAAATGTCTTCCGGGTCCGAACCCTTCAACTCCTGGCTGCACAGGGGTTGGGGGTTGGGACTGTGATATCGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR TCA 90 bp CTCTTAGGGCATGGAGCCAGAGCGTGTGTGTCTCACATAGGGTTGTaGAGGCTGGCCCTGCTGGACTGTGGGAGGGCTGAGCAGCTCTGC +
Preference number: 1 (lower is better)
Translates to: LLGHGARACVSHIGL*RLALLDCGRAEQLC
Trigger: GCAGAGCTGCTCAGCCCTCCCACAGTCCAGCAGGGCCAGCCTTCACAACCCTATGTGAGACACACACGCTCTGGCTCCATGCCCTAAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR TCA 90 bp AGGCAGTGGGCACGGGACAGGCAGCTTTGGTTTGAATCAGCACTCTaGCTTCTACTAAGCTGGGCAGAGGTGGGGCAAGCAGGGCTGCCC +
Preference number: 1 (lower is better)
Translates to: RQWARDRQLWFESAL*LLLSWAEVGQAGLP
Trigger: GGGCAGCCCTGCTTGCCCCACCTCTGCCCAGCTTAGTAGAAGTCAGAGTGCTGATTCAAACCAAAGCTGCCTGTCCCGTGCCCACTGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CCA 90 bp TCCTCCCCAGAGGTCCTGGAGGCATCAAGTCACAAGCTGGCCAGGTaGGGGTTCTGGCAGAGGTCAGACAGCGGTGGCATGGTAGACAAA +
Preference number: 1 (lower is better)
Translates to: SSPEVLEASSHKLAR*GFWQRSDSGGMVDK
Trigger: TTTGTCTACCATGCCACCGCTGTCTGACCTCTGCCAGAACCCCCACCTGGCCAGCTTGTGACTTGATGCCTCCAGGACCTCTGGGGAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR CCA 90 bp CTCATACACATCACAGGCACTAACCCTGGGGCACAGGGCCACCCCTaGTTCTCCCTACTGAGAGTCCTCCCTGCTACGATAGCCTGCTCC +
Preference number: 1 (lower is better)
Translates to: LIHITGTNPGAQGHP*FSLLRVLPATIACS
Trigger: GGAGCAGGCTATCGTAGCAGGGAGGACTCTCAGTAGGGAGAACCAGGGGTGGCCCTGTGCCCCAGGGTTAGTGCCTGTGATGTGTATGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CCA 90 bp AGGGTGGGGCAAGGGGATGCAGGAAGTTGGACGCCTCGGGTGGACTaGCCACAGGAAGTCTTGTGTTCTTCACCAAGGACACGAGGACAC +
Preference number: 1 (lower is better)
Translates to: RVGQGDAGSWTPRVD*PQEVLCSSPRTRGH
Trigger: GTGTCCTCGTGTCCTTGGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCTGCATCCCCTTGCCCCACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CCA 90 bp CTGCTAGGGTGGGGCAAGGGGATGCAGGAAGTTGGACGCCTCGGGTaGACTGGCCACAGGAAGTCTTGTGTTCTTCACCAAGGACACGAG +
Preference number: 1 (lower is better)
Translates to: LLGWGKGMQEVGRLG*TGHRKSCVLHQGHE
Trigger: CTCGTGTCCTTGGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCTGCATCCCCTTGCCCCACCCTAGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR GCA 90 bp CAGTGGTGCAGAGGCGTGGATTCACATGTCTGCACCCAGGTGCACTaGCACCTGTGTGTGCATGTGCCACCTGATGGAGGTCTCGAGGTA +
Preference number: 1 (lower is better)
Translates to: QWCRGVDSHVCTQVH*HLCVHVPPDGGLEV
Trigger: TACCTCGAGACCTCCATCAGGTGGCACATGCACACACAGGTGGCAGTGCACCTGGGTGCAGACATGTGAATCCACGCCTCTGCACCACTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CCA 90 bp GAGGTCCTGGAGGCATCAAGTCACAAGCTGGCCAGGTGGGGGTTCTaGCAGAGGTCAGACAGCGGTGGCATGGTAGACAAAACAGATGGG +
Preference number: 1 (lower is better)
Translates to: EVLEASSHKLARWGF*QRSDSGGMVDKTDG
Trigger: CCCATCTGTTTTGTCTACCATGCCACCGCTGTCTGACCTCTGCCAGAACCCCCACCTGGCCAGCTTGTGACTTGATGCCTCCAGGACCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR GCA 90 bp AGGTGGTCTGAAAGGCGATATCACAGTCCCAACCCCCAACCCCTGTaGAGCCAGGAGTTGAAGGGTTCGGACCCGGAAGACATTTGCACG +
Preference number: 1 (lower is better)
Translates to: RWSERRYHSPNPQPL*SQELKGSDPEDICT
Trigger: CGTGCAAATGTCTTCCGGGTCCGAACCCTTCAACTCCTGGCTGCACAGGGGTTGGGGGTTGGGACTGTGATATCGCCTTTCAGACCACCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR GCA 90 bp ATGCAGAGGCCTTCACAGTGGTGCAGAGGCGTGGATTCACATGTCTaGACCCAGGTGCACTGCCACCTGTGTGTGCATGTGCCACCTGAT +
Preference number: 1 (lower is better)
Translates to: MQRPSQWCRGVDSHV*TQVHCHLCVHVPPD
Trigger: ATCAGGTGGCACATGCACACACAGGTGGCAGTGCACCTGGGTGCAGACATGTGAATCCACGCCTCTGCACCACTGTGAAGGCCTCTGCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR TCA 90 bp AGGATGGTCAGTTTGGAATCGAAGACAGTCTGGGACAGAGTCCCATaGGCTAGGCAGTGGGCACGGGACAGGCAGCTTTGGTTTGAATCA +
Preference number: 1 (lower is better)
Translates to: RMVSLESKTVWDRVP*ARQWARDRQLWFES
Trigger: TGATTCAAACCAAAGCTGCCTGTCCCGTGCCCACTGCCTAGCTCATGGGACTCTGTCCCAGACTGTCTTCGATTCCAAACTGACCATCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR GCA 90 bp TGGCTACCCCCAAAGCTGCCAGTGGGCCGTAGGCTCCAAGGTGCCGGCCACTGGGGCCGAGATGGTGGGTaGCAGGCTCGGAGGGAGCAG +
Preference number: 2 (lower is better)
Translates to: WLPPKLPVGRRLQGAGHWGRDGG*QARREQ
Trigger: CTGCTCCCTCCGAGCCTGGCACCCACCATCTCGGCC...CCAGTGGCCGGCACCTTGGAGCCTACGGCCCACTGGCAGCTTTGGGGGTAGCCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR TCA 90 bp GGGTGGGGCAAGGGGATGCAGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGTGGGACAGAGTCCCATaGGCTAGGCAGTGGGCACGG +
Preference number: 2 (lower is better)
Translates to: GWGKGMQEVGRLGWTGHRWDRVP*ARQWAR
Trigger: CCGTGCCCACTGCCTAGCTCATGGGACTCTGTCCCA...CCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCTGCATCCCCTTGCCCCACCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CCA 90 bp CCCCAGCTGGGTTCCCTGACAGGATTCGTTTGGGCCTCCCAGGGAGGGATGTGGCGGTGCCTCCCTCTGTaGCAGGGTGGAGGCAGCCTC +
Preference number: 2 (lower is better)
Translates to: PQLGSLTGFVWASQGGMWRCLPL*QGGGSL
Trigger: GAGGCTGCCTCCACCCTGCCACAGAGGGAGGCACCG...CCACATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAGGGAACCCAGCTGGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CAA 90 bp ACCCCTGTGCAGCCAGGAGTTGAAGGGTTCGGACCCGGAAGACATTaGCACGGTGCCTCCCTCTGTGGCAGGGTGGAGGCAGCCTCGTGG +
Preference number: 2 (lower is better)
Translates to: TPVQPGVEGFGPGRH*HGASLCGRVEAASW
Trigger: CCACGAGGCTGCCTCCACCCTGCCACAGAGGGAGGCACCGTGCAAATGTCTTCCGGGTCCGAACCCTTCAACTCCTGGCTGCACAGGGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR TCA 90 bp CTAGGACAGTGGCACCTGGGGCTCAGCACTGAGGACCCCACTGTGGCCAACACCGCAGGAGGAAGGGCCTaGGCAGACAGAGGACTCGCT +
Preference number: 2 (lower is better)
Translates to: LGQWHLGLSTEDPTVANTAGGRA*ADRGLA
Trigger: AGCGAGTCCTCTGTCTGCTCAGGCCCTTCCTCCTGC...GGTGTTGGCCACAGTGGGGTCCTCAGTGCTGAGCCCCAGGTGCCACTGTCCTAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR-3UTR CCA 90 bp CAGCTCTCAGGCTGGGCGGCAGCAAGGACCAGTCAGGAGGGCAGACAGGAACATTCAGGGCCGAGATGGTaGGTGCCAGGCTCGGAGGGA +
Preference number: 2 (lower is better)
Translates to: QLSGWAAARTSQEGRQEHSGPRW*VPGSEG
Trigger: TCCCTCCGAGCCTGGCACCCACCATCTCGGCCCTGA...ATGTTCCTGTCTGCCCTCCTGACTGGTCCTTGCTGCCGCCCAGCCTGAGAGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CCA 90 bp CTAGGACAGTGGCACCTGGGGCTCAGCACTGAGGACCCCACTGTGGCCAACACCCCGCATGAGGTGGGATaGGGAACTGGGCAGGAAGCG +
Preference number: 2 (lower is better)
Translates to: LGQWHLGLSTEDPTVANTPHEVG*GTGQEA
Trigger: CGCTTCCTGCCCAGTTCCCCATCCCACCTCATGCGG...GGTGTTGGCCACAGTGGGGTCCTCAGTGCTGAGCCCCAGGTGCCACTGTCCTAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CCA 90 bp GAACAGCCAGGCCACATCAGGGGGCACCTGAACCCTGAGACAGCCCCAGAATCATCAGGGCCGAGATGGTaGGTGCCAGGCTCGGAGGGA +
Preference number: 2 (lower is better)
Translates to: EQPGHIRGHLNPETAPESSGPRW*VPGSEG
Trigger: TCCCTCCGAGCCTGGCACCCACCATCTCGGCCCTGA...TGATTCTGGGGCTGTCTCAGGGTTCAGGTGCCCCCTGATGTGGCCTGGCTGTTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CCA 90 bp CAGTGGCACCTGGGGCTCAGCACTGAGGACCCCACTGTGGCCAACACCATCTGGCAAAGCCGCATGAGGTaGGATGGGGAACTGGGCAGG +
Preference number: 2 (lower is better)
Translates to: QWHLGLSTEDPTVANTIWQSRMR*DGELGR
Trigger: CCTGCCCAGTTCCCCATCCCACCTCATGCGGCTTTG...CCAGATGGTGTTGGCCACAGTGGGGTCCTCAGTGCTGAGCCCCAGGTGCCACTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR TCA 90 bp GAACAGCCAGGCCACATCAGGGGGCACCTGAACCCTGAGACAGCCCCAGAATCACCAGCTGCCTGGTTTTaGAGAGGGGCCACCCAGCTG +
Preference number: 2 (lower is better)
Translates to: EQPGHIRGHLNPETAPESPAAWF*RGATQL
Trigger: CAGCTGGGTGGCCCCTCTTCAAAACCAGGCAGCTGG...TGATTCTGGGGCTGTCTCAGGGTTCAGGTGCCCCCTGATGTGGCCTGGCTGTTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR GCA 90 bp TGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCTTCACCAAGGACATGGGGCAAGCAGGGCTaGCCTGCCCCAGCTGGGTTC +
Preference number: 2 (lower is better)
Translates to: WTPRVDWPQEVLCSSPRTWGKQG*PAPAGF
Trigger: GAACCCAGCTGGGGCAGGGCAGCCCTGCTTGCCCCA...TGTCCTTGGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CCA 90 bp AGGGCATGGAGCCAGAGCGTGTGTGTCTCACATAGGGTTGTGAAGGCTGGCCCTGGTTCAGGGCCGAGATaGTGGGTGCCAGGCTCGGAG +
Preference number: 2 (lower is better)
Translates to: RAWSQSVCVSHRVVKAGPGSGPR*WVPGSE
Trigger: CTCCGAGCCTGGCACCCACCATCTCGGCCCTGAACC...AGGGCCAGCCTTCACAACCCTATGTGAGACACACACGCTCTGGCTCCATGCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CCA 90 bp AGCCTGCTCTATCTTGCCCCGCCAGCTCTTAGGGCATGGAGCCAGAGCGTGTGTTCCCAGGGAGGGATGTaGGAGGTCTCAAGGCCTCGG +
Preference number: 2 (lower is better)
Translates to: SLLYLAPPALRAWSQSVCSQGGM*EVSRPR
Trigger: CCGAGGCCTTGAGACCTCCCACATCCCTCCCTGGGA...ACACACGCTCTGGCTCCATGCCCTAAGAGCTGGCGGGGCAAGATAGAGCAGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR TCA 90 bp AGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCTTCACCGGACTGTGGGAGGGCTaGGCAGCTCTGCCAGCCTTG +
Preference number: 2 (lower is better)
Translates to: RKLDASGGLATGSLVFFTGLWEG*AALPAL
Trigger: CAAGGCTGGCAGAGCTGCTCAGCCCTCCCACAGTCC...GGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR GCA 90 bp CATGGTCATGCCCTTGTATGCAGAGGCCTTCACAGTGGTGCAGAGGCGTGGATTGGCCGAGATGGTGGGTaGCAGGCTCGGAGGGAGCAG +
Preference number: 2 (lower is better)
Translates to: HGHALVCRGLHSGAEAWIGRDGG*QARREQ
Trigger: CTGCTCCCTCCGAGCCTGGCACCCACCATCTCGGCC...AATCCACGCCTCTGCACCACTGTGAAGGCCTCTGCATACAAGGGCATGACCATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR GCA 90 bp CAGCTCTCAGGCTGGGCGGCAGCAAGGACCAGTCAGGAGGGCAGACAGGAACATATACCCCCGAATGCATaGACCCTGGCAGGGACAGGA +
Preference number: 2 (lower is better)
Translates to: QLSGWAAARTSQEGRQEHIPPNA*TLAGTG
Trigger: TCCTGTCCCTGCCAGGGTGCATGCATTCGGGGGTAT...ATGTTCCTGTCTGCCCTCCTGACTGGTCCTTGCTGCCGCCCAGCCTGAGAGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CCA 90 bp GGATGCAGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCCCGCATGAGGTGGGATaGGGAACTGGGCAGGAAGCG +
Preference number: 2 (lower is better)
Translates to: GCRKLDASGGLATGSLVFPHEVG*GTGQEA
Trigger: CGCTTCCTGCCCAGTTCCCCATCCCACCTCATGCGG...GAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCTGCATCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CAA 90 bp AGGCGATATCACAGTCCCAACCCCCAACCCCTGTGCAGCCAGGAGTaGAAGGGTTCGGACCCGGAAGACATTTGCACGGTGCCTCCCTCT +
Preference number: 2 (lower is better)
Translates to: RRYHSPNPQPLCSQE*KGSDPEDICTVPPS
Trigger: AGAGGGAGGCACCGTGCAAATGTCTTCCGGGTCCGAACCCTTCAACTCCTGGCTGCACAGGGGTTGGGGGTTGGGACTGTGATATCGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR TCA 90 bp GGATGCAGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCTGTGCAGCCAGGAGTTaGAGGGTTCGGACCCGGAAG +
Preference number: 2 (lower is better)
Translates to: GCRKLDASGGLATGSLVFCAARS*RVRTRK
Trigger: CTTCCGGGTCCGAACCCTTCAACTCCTGGCTGCACA...GAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCTGCATCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR TCA 90 bp AGGGCATGGAGCCAGAGCGTGTGTGTCTCACATAGGGTTGTGAAGGCTGGCCCTAAGGCCAAAGCCGCATaGGGTGGGATGGGGAACTGG +
Preference number: 2 (lower is better)
Translates to: RAWSQSVCVSHRVVKAGPKAKAA*GGMGNW
Trigger: CCAGTTCCCCATCCCACCTCATGCGGCTTTGGCCTT...AGGGCCAGCCTTCACAACCCTATGTGAGACACACACGCTCTGGCTCCATGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR GCA 90 bp AGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCTTCACCTGTGAAGGCTGGCCCTaGTGGACTGTGGGAGGGCTG +
Preference number: 2 (lower is better)
Translates to: RKLDASGGLATGSLVFFTCEGWP*WTVGGL
Trigger: CAGCCCTCCCACAGTCCAGCAGGGCCAGCCTTCACA...GGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR GCA 90 bp GCAGAGGCGTGGATTCACATGTCTGCACCCAGGTGCACTGCCACCTGTGTGTGCGTGGGGCTGGTGGCCTaGATCTGTCCTGTTGTCACT +
Preference number: 2 (lower is better)
Translates to: AEAWIHMSAPRCTATCVCVGLVA*ICPVVT
Trigger: AGTGACAACAGGACAGATGCAGGCCACCAGCCCCAC...GCACACACAGGTGGCAGTGCACCTGGGTGCAGACATGTGAATCCACGCCTCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CCA 90 bp GACTATATTTTTCTATACCCCCGAATGCATGCACCCTGGCAGGGACAGGATGGTGCGCCCACCCGGCCATaGGACCCGGCGGCAGAAAGG +
Preference number: 2 (lower is better)
Translates to: DYIFLYPRMHAPWQGQDGAPTRP*DPAAER
Trigger: CCTTTCTGCCGCCGGGTCCCATGGCCGGGTGGGCGC...ACCATCCTGTCCCTGCCAGGGTGCATGCATTCGGGGGTATAGAAAAATATAGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR-3UTR CCA 90 bp TGCACCCTGGCAGGGACAGGATGGTCAGTTTGGAATCGAAGACAGTCTGGGACATCGGAGGGAGCAGGGTaGCACTTAGGCCCCTCCGGA +
Preference number: 2 (lower is better)
Translates to: CTLAGTGWSVWNRRQSGTSEGAG*HLGPSG
Trigger: TCCGGAGGGGCCTAAGTGCCACCCTGCTCCCTCCGA...TGTCCCAGACTGTCTTCGATTCCAAACTGACCATCCTGTCCCTGCCAGGGTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR-3UTR TCA 90 bp TGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCTTCACCAAGGACACATCAGGAGAGGACTTaGGGCTGGGCTCTGAGGGTG +
Preference number: 2 (lower is better)
Translates to: WTPRVDWPQEVLCSSPRTHQERT*GWALRV
Trigger: CACCCTCAGAGCCCAGCCTCAAGTCCTCTCCTGATG...TGTCCTTGGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR-3UTR GCA 90 bp GGATGCAGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCATACCCCCGAATGCATaGACCCTGGCAGGGACAGGA +
Preference number: 2 (lower is better)
Translates to: GCRKLDASGGLATGSLVFIPPNA*TLAGTG
Trigger: TCCTGTCCCTGCCAGGGTGCATGCATTCGGGGGTAT...GAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCTGCATCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR GCA 90 bp AGGGCATGGAGCCAGAGCGTGTGTGTCTCACATAGGGTTGTGAAGGCTGGCCCTAAGACATTTGCACGGTaGCTCCCTCTGTGGCAGGGT +
Preference number: 2 (lower is better)
Translates to: RAWSQSVCVSHRVVKAGPKTFAR*LPLWQG
Trigger: ACCCTGCCACAGAGGGAGGCACCGTGCAAATGTCTT...AGGGCCAGCCTTCACAACCCTATGTGAGACACACACGCTCTGGCTCCATGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR GCA 90 bp ATATTTTTCTATACCCCCGAATGCATGCACCCTGGCAGGGACAGGATGGTCAGTTGGGGCAAGCAGGGCTaGCCTGCCCCAGCTGGGTTC +
Preference number: 2 (lower is better)
Translates to: IFFYTPECMHPGRDRMVSWGKQG*PAPAGF
Trigger: GAACCCAGCTGGGGCAGGGCAGCCCTGCTTGCCCCA...ACTGACCATCCTGTCCCTGCCAGGGTGCATGCATTCGGGGGTATAGAAAAATAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CCA 90 bp CTGGCCACAGGAAGTCTTGTGTTCTTCACCAAGGACACGAGGACACACATGGTCGTGGAGGCAGCCTCGTaGTTCAGGGCCGAGATGGTG +
Preference number: 2 (lower is better)
Translates to: LATGSLVFFTKDTRTHMVVEAAS*FRAEMV
Trigger: CACCATCTCGGCCCTGAACCACGAGGCTGCCTCCAC...GACCATGTGTGTCCTCGTGTCCTTGGTGAAGAACACAAGACTTCCTGTGGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CCA 90 bp CCTGATGGAGGTCTCGAGGTATCCCAGCAACAATGCAAAATGCAGCCTTTCCCCGTGGAGGCAGCCTCGTaGTTCAGGGCCGAGATGGTG +
Preference number: 2 (lower is better)
Translates to: PDGGLEVSQQQCKMQPFPVEAAS*FRAEMV
Trigger: CACCATCTCGGCCCTGAACCACGAGGCTGCCTCCAC...GGGGAAAGGCTGCATTTTGCATTGTTGCTGGGATACCTCGAGACCTCCATCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CCA 90 bp CAGATGACATATTTACAGGATGCGGAGGGACCCAGGTCTGGGCCAGGTGAATGCCAAAGCCGCATGAGGTaGGATGGGGAACTGGGCAGG +
Preference number: 2 (lower is better)
Translates to: QMTYLQDAEGPRSGPGECQSRMR*DGELGR
Trigger: CCTGCCCAGTTCCCCATCCCACCTCATGCGGCTTTG...GCATTCACCTGGCCCAGACCTGGGTCCCTCCGCATCCTGTAAATATGTCATCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CAA 90 bp GATGCAGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTaGTGTTCTTCACCAAGGACACGAGGACACACATGGTCATGCCCT +
Preference number: 2 (lower is better)
Translates to: DAGSWTPRVDWPQEV*CSSPRTRGHTWSCP
Trigger: AGGGCATGACCATGTGTGTCCTCGTGTCCTTGGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCTGCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR GCA 90 bp TGCACCCTGGCAGGGACAGGATGGTCAGTTTGGAATCGAAGACAGTCTGGGACAGACCCGGAAGACATTTaGACGGTGCCTCCCTCTGTG +
Preference number: 2 (lower is better)
Translates to: CTLAGTGWSVWNRRQSGTDPEDI*TVPPSV
Trigger: CACAGAGGGAGGCACCGTGCAAATGTCTTCCGGGTC...TGTCCCAGACTGTCTTCGATTCCAAACTGACCATCCTGTCCCTGCCAGGGTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR GCA 90 bp CAGATGACATATTTACAGGATGCGGAGGGACCCAGGTCTGGGCCAGGTGAATGCACCATCCACGAGGCCTaGCCTTTCCCCATCTCCTCA +
Preference number: 2 (lower is better)
Translates to: QMTYLQDAEGPRSGPGECTIHEA*PFPISS
Trigger: TGAGGAGATGGGGAAAGGGCAGGCCTCGTGGATGGT...GCATTCACCTGGCCCAGACCTGGGTCCCTCCGCATCCTGTAAATATGTCATCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CCA 90 bp ACGAGGACACACATGGTCATGCCCTTGTATGCAGAGGCCTTCACAGTGGTGCAGCATCAAGTCACAAGCTaGCCAGGTGGGGGTTCTGGC +
Preference number: 2 (lower is better)
Translates to: TRTHMVMPLYAEAFTVVQHQVTS*PGGGSG
Trigger: GCCAGAACCCCCACCTGGCCAGCTTGTGACTTGATG...CTGCACCACTGTGAAGGCCTCTGCATACAAGGGCATGACCATGTGTGTCCTCGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR-3UTR CCA 90 bp TGCACCCTGGCAGGGACAGGATGGTCAGTTTGGAATCGAAGACAGTCTGGGACACCTCCGGACCTGGAATaGAGAGAGGGCATCAGGAGA +
Preference number: 2 (lower is better)
Translates to: CTLAGTGWSVWNRRQSGTPPDLE*REGIRR
Trigger: TCTCCTGATGCCCTCTCTCCATTCCAGGTCCGGAGG...TGTCCCAGACTGTCTTCGATTCCAAACTGACCATCCTGTCCCTGCCAGGGTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR-3UTR CCA 90 bp CAGATGACATATTTACAGGATGCGGAGGGACCCAGGTCTGGGCCAGGTGAATGCGGGGAGCTACTCCCCTaGTTCCAGCTGCCTGGTTTT +
Preference number: 2 (lower is better)
Translates to: QMTYLQDAEGPRSGPGECGELLP*FQLPGF
Trigger: AAAACCAGGCAGCTGGAACCAGGGGAGTAGCTCCCC...GCATTCACCTGGCCCAGACCTGGGTCCCTCCGCATCCTGTAAATATGTCATCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR TCA 90 bp AGCCTGCTCTATCTTGCCCCGCCAGCTCTTAGGGCATGGAGCCAGAGCGTGTGTCAGGCAGCTTTGGTTTaGATCAGCACTCTGACTTCT +
Preference number: 2 (lower is better)
Translates to: SLLYLAPPALRAWSQSVCQAALV*ISTLTS
Trigger: AGAAGTCAGAGTGCTGATTCAAACCAAAGCTGCCTG...ACACACGCTCTGGCTCCATGCCCTAAGAGCTGGCGGGGCAAGATAGAGCAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR GCA 90 bp CGAGGACACACATGGTCATGCCCTTGTATGCAGAGGCCTTCACAGTGGTGCAGAAAGACATTTGCACGGTaGCTCCCTCTGTGGCAGGGT +
Preference number: 2 (lower is better)
Translates to: RGHTWSCPCMQRPSQWCRKTFAR*LPLWQG
Trigger: ACCCTGCCACAGAGGGAGGCACCGTGCAAATGTCTT...TCTGCACCACTGTGAAGGCCTCTGCATACAAGGGCATGACCATGTGTGTCCTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR GCA 90 bp GCAGAGGCGTGGATTCACATGTCTGCACCCAGGTGCACTGCCACCTGTGTGTGCAGCAACAATGCAAAATaGAGCCTTTCCCCTGACCTC +
Preference number: 2 (lower is better)
Translates to: AEAWIHMSAPRCTATCVCSNNAK*SLSPDL
Trigger: GAGGTCAGGGGAAAGGCTGCATTTTGCATTGTTGCT...GCACACACAGGTGGCAGTGCACCTGGGTGCAGACATGTGAATCCACGCCTCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CCA 90 bp CTGGCCACAGGAAGTCTTGTGTTCTTCACCAAGGACACGAGGACACACATGGTCCTGAGGACCCCACTGTaGCCAACACCATCTGGCTAC +
Preference number: 2 (lower is better)
Translates to: LATGSLVFFTKDTRTHMVLRTPL*PTPSGY
Trigger: GTAGCCAGATGGTGTTGGCCACAGTGGGGTCCTCAG...GACCATGTGTGTCCTCGTGTCCTTGGTGAAGAACACAAGACTTCCTGTGGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CCA 90 bp ATATTTTTCTATACCCCCGAATGCATGCACCCTGGCAGGGACAGGATGGTCAGTCACAAGCTGGCCAGGTaGGGGTTCTGGCAGAGGTCA +
Preference number: 2 (lower is better)
Translates to: IFFYTPECMHPGRDRMVSHKLAR*GFWQRS
Trigger: TGACCTCTGCCAGAACCCCCACCTGGCCAGCTTGTG...ACTGACCATCCTGTCCCTGCCAGGGTGCATGCATTCGGGGGTATAGAAAAATAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR-3UTR CCA 90 bp CTGGCCACAGGAAGTCTTGTGTTCTTCACCAAGGACACGAGGACACACATGGTCAAGGGACGGATGAAATaGAGACAAGGACAGCGGGAG +
Preference number: 2 (lower is better)
Translates to: LATGSLVFFTKDTRTHMVKGRMK*RQGQRE
Trigger: CTCCCGCTGTCCTTGTCTCCATTTCATCCGTCCCTT...GACCATGTGTGTCCTCGTGTCCTTGGTGAAGAACACAAGACTTCCTGTGGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR-3UTR CCA 90 bp TGCATGCACCCTGGCAGGGACAGGATGGTCAGTTTGGAATCGAAGACAGTCTGGGAGGTCAGACAGCGGTaGCATGGTAGACAAAACAGA +
Preference number: 2 (lower is better)
Translates to: CMHPGRDRMVSLESKTVWEVRQR*HGRQNR
Trigger: TCTGTTTTGTCTACCATGCCACCGCTGTCTGACCTC...CCAGACTGTCTTCGATTCCAAACTGACCATCCTGTCCCTGCCAGGGTGCATGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR-3UTR CCA 90 bp GCAGAGGCGTGGATTCACATGTCTGCACCCAGGTGCACTGCCACCTGTGTGTGCGGCTTCCTTACATTGTaGTTTTCGTCCATAAGAGAG +
Preference number: 2 (lower is better)
Translates to: AEAWIHMSAPRCTATCVCGFLTL*FSSIRE
Trigger: CTCTCTTATGGACGAAAACCACAATGTAAGGAAGCC...GCACACACAGGTGGCAGTGCACCTGGGTGCAGACATGTGAATCCACGCCTCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR TCA 90 bp TCTGTAAACTTACTACTCAGCCCTAGACTACAGGTGAATAAAACTTGTGACGGGATCAGCCCCTTCCCGTaGGGTCCAGGGGAGCTACTC +
Preference number: 2 (lower is better)
Translates to: SVNLLLSPRLQVNKTCDGISPFP*GPGELL
Trigger: GAGTAGCTCCCCTGGACCTCACGGGAAGGGGCTGAT...CCCGTCACAAGTTTTATTCACCTGTAGTCTAGGGCTGAGTAGTAAGTTTACAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR TCA 90 bp GGTATCCCAGCAACAATGCAAAATGCAGCCTTTCCCCTGACCTCAGCTAGTGGGCAGAATCACCCTTCTTaGAAGGGGAAAGGTGGAGTT +
Preference number: 2 (lower is better)
Translates to: GIPATMQNAAFPLTSASGQNHPS*KGKGGV
Trigger: AACTCCACCTTTCCCCTTTCAAGAAGGGTGATTCTG...CCCACTAGCTGAGGTCAGGGGAAAGGCTGCATTTTGCATTGTTGCTGGGATACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR TCA 90 bp CAGCAAGGACCAGTCAGGAGGGCAGACAGGAACATCTGTAAACTTACTACTCAGATGCAAAGGGACGGATaGAATGGAGACAAGGACAGC +
Preference number: 2 (lower is better)
Translates to: QQGPVRRADRNICKLTTQMQRDG*NGDKDS
Trigger: GCTGTCCTTGTCTCCATTTCATCCGTCCCTTTGCAT...CTGAGTAGTAAGTTTACAGATGTTCCTGTCTGCCCTCCTGACTGGTCCTTGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR-3UTR CCA 90 bp CAGACAGGAACATCTGTAAACTTACTACTCAGCCCTAGACTACAGGTGAATAAACCCTCTGTGGCAGGGTaGAGGCAGCCTCGTGGTTCA +
Preference number: 2 (lower is better)
Translates to: QTGTSVNLLLSPRLQVNKPSVAG*RQPRGS
Trigger: TGAACCACGAGGCTGCCTCCACCCTGCCACAGAGGG...TTTATTCACCTGTAGTCTAGGGCTGAGTAGTAAGTTTACAGATGTTCCTGTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CCA 90 bp TCTGTAAACTTACTACTCAGCCCTAGACTACAGGTGAATAAAACTTGTGACGGGCTGACAGGATTCGTTTaGGCCTCCCAGGGAGGGATG +
Preference number: 2 (lower is better)
Translates to: SVNLLLSPRLQVNKTCDGLTGFV*ASQGGM
Trigger: CATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAG...CCCGTCACAAGTTTTATTCACCTGTAGTCTAGGGCTGAGTAGTAAGTTTACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CCA 72 bp GCAGGGTGGAGGCAGCCTCGTGGTTCAGGGCCGAGATaGTGGGTGCCAGGCTCGGAGGGAGCAGGGTGGCAC +
Preference number: 3 (lower is better)
Translates to: AGWRQPRGSGPR*WVPGSEGAGWH
Trigger: GTGCCACCCTGCTCCCTCCGAGCCTGGCACCCACCATCTCGGCCCTGAACCACGAGGCTGCCTCCACCCTGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CCA 72 bp GGGTTGCAGGGCACAGTTCCAGCGCCCACCCGGCCATaGGACCCGGCGGCAGAAAGGACAGATGAAGGTGGG +
Preference number: 3 (lower is better)
Translates to: GLQGTVPAPTRP*DPAAERTDEGG
Trigger: CCCACCTTCATCTGTCCTTTCTGCCGCCGGGTCCCATGGCCGGGTGGGCGCTGGAACTGTGCCCTGCAACCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR CCA 72 bp GGGTGGAGGCAGCCTCGTGGTTCAGGGCCGAGATGGTaGGTGCCAGGCTCGGAGGGAGCAGGGTGGCACTTA +
Preference number: 3 (lower is better)
Translates to: GWRQPRGSGPRW*VPGSEGAGWHL
Trigger: TAAGTGCCACCCTGCTCCCTCCGAGCCTGGCACCCACCATCTCGGCCCTGAACCACGAGGCTGCCTCCACCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR TCA 72 bp GGGCAAGCAGGGCTGCCCTGCCCCAGCTGGGTTCCCTaGCAGGATTCGTTTGGGCCTCCCAGGGAGGGATGT +
Preference number: 3 (lower is better)
Translates to: GQAGLPCPSWVP*QDSFGPPREGC
Trigger: ACATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAGGGAACCCAGCTGGGGCAGGGCAGCCCTGCTTGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CCA 72 bp CGGACCCGGAAGACATTTGCACGGTGCCTCCCTCTGTaGCAGGGTGGAGGCAGCCTCGTGGTTCAGGGCCGA +
Preference number: 3 (lower is better)
Translates to: RTRKTFARCLPL*QGGGSLVVQGR
Trigger: TCGGCCCTGAACCACGAGGCTGCCTCCACCCTGCCACAGAGGGAGGCACCGTGCAAATGTCTTCCGGGTCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR GCA 72 bp CCACTGTGGCCAACACCATCTGGCTACCCCCAAAGCTaGCAGTGGGCCGTAGGCTCCAAGGTGCCGGCCACT +
Preference number: 3 (lower is better)
Translates to: PLWPTPSGYPQS*QWAVGSKVPAT
Trigger: AGTGGCCGGCACCTTGGAGCCTACGGCCCACTGGCAGCTTTGGGGGTAGCCAGATGGTGTTGGCCACAGTGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CCA 72 bp GCCCTGCCCCAGCTGGGTTCCCTGACAGGATTCGTTTaGGCCTCCCAGGGAGGGATGTGGGAGGTCTCAAGG +
Preference number: 3 (lower is better)
Translates to: ALPQLGSLTGFV*ASQGGMWEVSR
Trigger: CCTTGAGACCTCCCACATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAGGGAACCCAGCTGGGGCAGGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CCA 72 bp GGAGGGAGCAGGGTGGCACTTAGGCCCCTCCGGACCTaGAATGGAGAGAGGGCATCAGGAGAGGACTTGAGG +
Preference number: 3 (lower is better)
Translates to: GGSRVALRPLRT*NGERASGEDLR
Trigger: CCTCAAGTCCTCTCCTGATGCCCTCTCTCCATTCCAGGTCCGGAGGGGCCTAAGTGCCACCCTGCTCCCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR CCA 72 bp GAAGACATTTGCACGGTGCCTCCCTCTGTGGCAGGGTaGAGGCAGCCTCGTGGTTCAGGGCCGAGATGGTGG +
Preference number: 3 (lower is better)
Translates to: EDICTVPPSVAG*RQPRGSGPRWW
Trigger: CCACCATCTCGGCCCTGAACCACGAGGCTGCCTCCACCCTGCCACAGAGGGAGGCACCGTGCAAATGTCTTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CCA 72 bp CTCAGCACTGAGGACCCCACTGTGGCCAACACCATCTaGCTACCCCCAAAGCTGCCAGTGGGCCGTAGGCTC +
Preference number: 3 (lower is better)
Translates to: LSTEDPTVANTI*LPPKLPVGRRL
Trigger: GAGCCTACGGCCCACTGGCAGCTTTGGGGGTAGCCAGATGGTGTTGGCCACAGTGGGGTCCTCAGTGCTGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CAA 90 bp CAGCTCTCAGGCTGGGCGGCAGCAAGGACCAGTCAGGAGGGCAGACAGGAACATCCTGACAGGATTCGTTaGGGCCTCCCAGGGAGGGAT +
Preference number: 3 (lower is better)
Translates to: QLSGWAAARTSQEGRQEHPDRIR*GLPGRD
Trigger: ATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAGG...ATGTTCCTGTCTGCCCTCCTGACTGGTCCTTGCTGCCGCCCAGCCTGAGAGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR TCA 72 bp TTCACAGGGGGAGACGTGTGCAAGGCCAAAGCCGCATaGGGTGGGATGGGGAACTGGGCAGGAAGCGTCCTC +
Preference number: 3 (lower is better)
Translates to: FTGGDVCKAKAA*GGMGNWAGSVL
Trigger: GAGGACGCTTCCTGCCCAGTTCCCCATCCCACCTCATGCGGCTTTGGCCTTGCACACGTCTCCCCCTGTGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR GCA 72 bp GGGCCACCCCTGGTTCTCCCTACTGAGAGTCCTCCCTaGTACGATAGCCTGCTCCAGAACAGCCAGGCCACA +
Preference number: 3 (lower is better)
Translates to: GPPLVLPTESPP*YDSLLQNSQAT
Trigger: TGTGGCCTGGCTGTTCTGGAGCAGGCTATCGTAGCAGGGAGGACTCTCAGTAGGGAGAACCAGGGGTGGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CCA 72 bp GGCCAGGTGGGGGTTCTGGCAGAGGTCAGACAGCGGTaGCATGGTAGACAAAACAGATGGGCAGGACGCAGG +
Preference number: 3 (lower is better)
Translates to: GQVGVLAEVRQR*HGRQNRWAGRR
Trigger: CCTGCGTCCTGCCCATCTGTTTTGTCTACCATGCCACCGCTGTCTGACCTCTGCCAGAACCCCCACCTGGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR CCA 72 bp GAGGTCCTGGAGGCATCAAGTCACAAGCTGGCCAGGTaGGGGTTCTGGCAGAGGTCAGACAGCGGTGGCATG +
Preference number: 3 (lower is better)
Translates to: EVLEASSHKLAR*GFWQRSDSGGM
Trigger: CATGCCACCGCTGTCTGACCTCTGCCAGAACCCCCACCTGGCCAGCTTGTGACTTGATGCCTCCAGGACCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR CCA 72 bp GCAGGAAGCGTCCTCCTCCCGGCCCCTCTACCCAGGTaGTCTGAAAGGCGATATCACAGTCCCAACCCCCAA +
Preference number: 3 (lower is better)
Translates to: AGSVLLPAPLPR*SERRYHSPNPQ
Trigger: TTGGGGGTTGGGACTGTGATATCGCCTTTCAGACCACCTGGGTAGAGGGGCCGGGAGGAGGACGCTTCCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CCA 72 bp CCCACCAGGCACCGGTCCAGGCCCCAACGTGAGCTGTaGCAGTCTGTGATGATGGAGGCTACATTCACAGGG +
Preference number: 3 (lower is better)
Translates to: PTRHRSRPQREL*QSVMMEATFTG
Trigger: CCCTGTGAATGTAGCCTCCATCATCACAGACTGCCACAGCTCACGTTGGGGCCTGGACCGGTGCCTGGTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR TCA 72 bp GGACCTGGAATGGAGAGAGGGCATCAGGAGAGGACTTaGGGCTGGGCTCTGAGGGTGAGCCCTCTAGTTGCC +
Preference number: 3 (lower is better)
Translates to: GPGMERGHQERT*GWALRVSPLVA
Trigger: GGCAACTAGAGGGCTCACCCTCAGAGCCCAGCCTCAAGTCCTCTCCTGATGCCCTCTCTCCATTCCAGGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR TCA 72 bp ACAGTCCCAACCCCCAACCCCTGTGCAGCCAGGAGTTaGAGGGTTCGGACCCGGAAGACATTTGCACGGTGC +
Preference number: 3 (lower is better)
Translates to: TVPTPNPCAARS*RVRTRKTFARC
Trigger: GCACCGTGCAAATGTCTTCCGGGTCCGAACCCTTCAACTCCTGGCTGCACAGGGGTTGGGGGTTGGGACTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR TCA 72 bp AGCTGTCCCCACCAGGCACCGGTCCAGGCCCCAACGTaGGCTGTGGCAGTCTGTGATGATGGAGGCTACATT +
Preference number: 3 (lower is better)
Translates to: SCPHQAPVQAPT*AVAVCDDGGYI
Trigger: AATGTAGCCTCCATCATCACAGACTGCCACAGCTCACGTTGGGGCCTGGACCGGTGCCTGGTGGGGACAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR GCA 72 bp TTCTCCCTACTGAGAGTCCTCCCTGCTACGATAGCCTaGTCCAGAACAGCCAGGCCACATCAGGGGGCACCT +
Preference number: 3 (lower is better)
Translates to: FSLLRVLPATIA*SRTARPHQGAP
Trigger: AGGTGCCCCCTGATGTGGCCTGGCTGTTCTGGAGCAGGCTATCGTAGCAGGGAGGACTCTCAGTAGGGAGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR GCA 72 bp TCTGCACCCAGGTGCACTGCCACCTGTGTGTGCATGTaGCACCTGATGGAGGTCTCGAGGTATCCCAGCAAC +
Preference number: 3 (lower is better)
Translates to: SAPRCTATCVCM*HLMEVSRYPSN
Trigger: GTTGCTGGGATACCTCGAGACCTCCATCAGGTGGCACATGCACACACAGGTGGCAGTGCACCTGGGTGCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR GCA 72 bp CACATGTCTGCACCCAGGTGCACTGCCACCTGTGTGTaGATGTGCCACCTGATGGAGGTCTCGAGGTATCCC +
Preference number: 3 (lower is better)
Translates to: HMSAPRCTATCV*MCHLMEVSRYP
Trigger: GGGATACCTCGAGACCTCCATCAGGTGGCACATGCACACACAGGTGGCAGTGCACCTGGGTGCAGACATGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CCA 72 bp ATCACAGGCACTAACCCTGGGGCACAGGGCCACCCCTaGTTCTCCCTACTGAGAGTCCTCCCTGCTACGATA +
Preference number: 3 (lower is better)
Translates to: ITGTNPGAQGHP*FSLLRVLPATI
Trigger: TATCGTAGCAGGGAGGACTCTCAGTAGGGAGAACCAGGGGTGGCCCTGTGCCCCAGGGTTAGTGCCTGTGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR GCA 72 bp CCTTCACAGTGGTGCAGAGGCGTGGATTCACATGTCTaGACCCAGGTGCACTGCCACCTGTGTGTGCATGTG +
Preference number: 3 (lower is better)
Translates to: PSQWCRGVDSHV*TQVHCHLCVHV
Trigger: CACATGCACACACAGGTGGCAGTGCACCTGGGTGCAGACATGTGAATCCACGCCTCTGCACCACTGTGAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CCA 72 bp GAGGCATCAAGTCACAAGCTGGCCAGGTGGGGGTTCTaGCAGAGGTCAGACAGCGGTGGCATGGTAGACAAA +
Preference number: 3 (lower is better)
Translates to: EASSHKLARWGF*QRSDSGGMVDK
Trigger: TTTGTCTACCATGCCACCGCTGTCTGACCTCTGCCAGAACCCCCACCTGGCCAGCTTGTGACTTGATGCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR CCA 72 bp TGGGGCAAGGGGATGCAGGAAGTTGGACGCCTCGGGTaGACTGGCCACAGGAAGTCTTGTGTTCTTCACCAA +
Preference number: 3 (lower is better)
Translates to: WGKGMQEVGRLG*TGHRKSCVLHQ
Trigger: TTGGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCTGCATCCCCTTGCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR TCA 72 bp AGTTTGGAATCGAAGACAGTCTGGGACAGAGTCCCATaGGCTAGGCAGTGGGCACGGGACAGGCAGCTTTGG +
Preference number: 3 (lower is better)
Translates to: SLESKTVWDRVP*ARQWARDRQLW
Trigger: CCAAAGCTGCCTGTCCCGTGCCCACTGCCTAGCTCATGGGACTCTGTCCCAGACTGTCTTCGATTCCAAACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CCA 72 bp CAAGGGGATGCAGGAAGTTGGACGCCTCGGGTGGACTaGCCACAGGAAGTCTTGTGTTCTTCACCAAGGACA +
Preference number: 3 (lower is better)
Translates to: QGDAGSWTPRVD*PQEVLCSSPRT
Trigger: TGTCCTTGGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCTGCATCCCCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CAA 90 bp GCAGAGGCGTGGATTCACATGTCTGCACCCAGGTGCACTGCCACCTGTGTGTGCACAGGCAGCTTTGGTTaGAATCAGCACTCTGACTTC +
Preference number: 3 (lower is better)
Translates to: AEAWIHMSAPRCTATCVCTGSFG*NQHSDF
Trigger: GAAGTCAGAGTGCTGATTCAAACCAAAGCTGCCTGT...GCACACACAGGTGGCAGTGCACCTGGGTGCAGACATGTGAATCCACGCCTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CAA 90 bp TGGTGCAGAGGCGTGGATTCACATGTCTGCACCCAGGTGCACTGCCACCTGTGTCCAGAATCACCCTTCTaGAAAGGGGAAAGGTGGAGT +
Preference number: 3 (lower is better)
Translates to: WCRGVDSHVCTQVHCHLCPESPF*KGERWS
Trigger: ACTCCACCTTTCCCCTTTCAAGAAGGGTGATTCTGG...ACACAGGTGGCAGTGCACCTGGGTGCAGACATGTGAATCCACGCCTCTGCACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR TCA 72 bp GCACGGGACAGGCAGCTTTGGTTTGAATCAGCACTCTaGCTTCTACTAAGCTGGGCAGAGGTGGGGCAAGCA +
Preference number: 3 (lower is better)
Translates to: ARDRQLWFESAL*LLLSWAEVGQA
Trigger: TGCTTGCCCCACCTCTGCCCAGCTTAGTAGAAGTCAGAGTGCTGATTCAAACCAAAGCTGCCTGTCCCGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR GCA 72 bp CAAGGACACGAGGACACACATGGTCATGCCCTTGTATaGAGAGGCCTTCACAGTGGTGCAGAGGCGTGGATT +
Preference number: 3 (lower is better)
Translates to: QGHEDTHGHALV*RGLHSGAEAWI
Trigger: AATCCACGCCTCTGCACCACTGTGAAGGCCTCTGCATACAAGGGCATGACCATGTGTGTCCTCGTGTCCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CAA 90 bp CAGCAAGGACCAGTCAGGAGGGCAGACAGGAACATCTGTAAACTTACTACTCAGGGACCCGGAAGACATTaGCACGGTGCCTCCCTCTGT +
Preference number: 3 (lower is better)
Translates to: QQGPVRRADRNICKLTTQGPGRH*HGASLC
Trigger: ACAGAGGGAGGCACCGTGCAAATGTCTTCCGGGTCC...CTGAGTAGTAAGTTTACAGATGTTCCTGTCTGCCCTCCTGACTGGTCCTTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR-3UTR CAA 90 bp AGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGTAGATCAGCCCCTTCCCGTGAGGGACCCGGAAGACATTaGCACGGTGCCTCCCTCTGT +
Preference number: 3 (lower is better)
Translates to: RERERERERKCRSAPSREGPGRH*HGASLC
Trigger: ACAGAGGGAGGCACCGTGCAAATGTCTTCCGGGTCC...CTCACGGGAAGGGGCTGATCTACATTTTCTCTCTCTCTCTCTCTCTCTCTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CCA 72 bp GTCTTGTGTTCTTCACCAAGGACACGAGGACACACATaGTCATGCCCTTGTATGCAGAGGCCTTCACAGTGG +
Preference number: 3 (lower is better)
Translates to: VLCSSPRTRGHT*SCPCMQRPSQW
Trigger: CCACTGTGAAGGCCTCTGCATACAAGGGCATGACCATGTGTGTCCTCGTGTCCTTGGTGAAGAACACAAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CCA 72 bp GACTATATTTTTCTATACCCCCGAATGCATGCACCCTaGCAGGGACAGGATGGTCAGTTTGGAATCGAAGAC +
Preference number: 3 (lower is better)
Translates to: DYIFLYPRMHAP*QGQDGQFGIED
Trigger: GTCTTCGATTCCAAACTGACCATCCTGTCCCTGCCAGGGTGCATGCATTCGGGGGTATAGAAAAATATAGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CAGGGCTGCCCTGCCCCAGCTGGGTTCCCTGACAGGATTCGTTTGGGCCTCCCACGTAGGCCGCCCCGCTaGTGGTGCTCTGGAAGGTTC +
Preference number: 4 (lower is better)
Translates to: QGCPAPAGFPDRIRLGLPRRPPR*WCSGRF
Trigger: GAACCTTCCAGAGCACCAGCAGCGGGGCGGCCTACG...TGGGAGGCCCAAACGAATCCTGTCAGGGAACCCAGCTGGGGCAGGGCAGCCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CTCTGTGGCAGGGTGGAGGCAGCCTCGTGGTTCAGGGCCGAGATGGTGGGTGCCTGGGCCCACAGGCCGTaGCGTCCTCCACATAGCTCA +
Preference number: 4 (lower is better)
Translates to: LCGRVEAASWFRAEMVGAWAHRP*RPPHSS
Trigger: TGAGCTATGTGGAGGACGGCACGGCCTGTGGGCCCA...GGCACCCACCATCTCGGCCCTGAACCACGAGGCTGCCTCCACCCTGCCACAGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp GAAGGGTTCGGACCCGGAAGACATTTGCACGGTGCCTCCCTCTGTGGCAGGGTGTCTCCCCCGGAGCTCTaGCTTACCAGCCGGCTGGGC +
Preference number: 4 (lower is better)
Translates to: EGFGPGRHLHGASLCGRVSPPEL*LTSRLG
Trigger: GCCCAGCCGGCTGGTAAGGCAGAGCTCCGGGGGAGA...CACCCTGCCACAGAGGGAGGCACCGTGCAAATGTCTTCCGGGTCCGAACCCTTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp GGGGAGACGTGTGCAAGGCCAAAGCCGCATGAGGTGGGATGGGGAACTGGGCAGGCAGCAGTTGCCCCCTaGTCGGCTGCACTCCTGCAC +
Preference number: 4 (lower is better)
Translates to: GETCARPKPHEVGWGTGQAAVAP*SAALLH
Trigger: GTGCAGGAGTGCAGCCGAGCAGGGGGCAACTGCTGC...CTGCCCAGTTCCCCATCCCACCTCATGCGGCTTTGGCCTTGCACACGTCTCCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CAGGGCTGCCCTGCCCCAGCTGGGTTCCCTGACAGGATTCGTTTGGGCCTCCCAGCACGTGGCCTCCCCTaGAGTCCAACTCCTTGCCCT +
Preference number: 4 (lower is better)
Translates to: QGCPAPAGFPDRIRLGLPARGLP*SPTPCP
Trigger: AGGGCAAGGAGTTGGACTGCAGGGGAGGCCACGTGC...TGGGAGGCCCAAACGAATCCTGTCAGGGAACCCAGCTGGGGCAGGGCAGCCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CAGTGGCACCTGGGGCTCAGCACTGAGGACCCCACTGTGGCCAACACCATCTGGCTGTGCACTGTGGGGTaGCCCCTGCGGACCTGCCTT +
Preference number: 4 (lower is better)
Translates to: QWHLGLSTEDPTVANTIWLCTVG*PLRTCL
Trigger: AAGGCAGGTCCGCAGGGGCCACCCCACAGTGCACAG...CCAGATGGTGTTGGCCACAGTGGGGTCCTCAGTGCTGAGCCCCAGGTGCCACTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp GTGGCAGGGTGGAGGCAGCCTCGTGGTTCAGGGCCGAGATGGTGGGTGCCAGGCCTACCCGAGAAGAGGTaGGTGGCATCACTGGGCTCA +
Preference number: 4 (lower is better)
Translates to: VAGWRQPRGSGPRWWVPGLPEKR*VASLGS
Trigger: TGAGCCCAGTGATGCCACCCACCTCTTCTCGGGTAG...GCCTGGCACCCACCATCTCGGCCCTGAACCACGAGGCTGCCTCCACCCTGCCAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp ACTGGGCAGGAAGCGTCCTCCTCCCGGCCCCTCTACCCAGGTGGTCTGAAAGGCAGGCCGCCCCGCTGCTaGTGCTCTGGAAGGTTCTAC +
Preference number: 4 (lower is better)
Translates to: TGQEASSSRPLYPGGLKGRPPRC*CSGRFY
Trigger: GTAGAACCTTCCAGAGCACCAGCAGCGGGGCGGCCT...GCCTTTCAGACCACCTGGGTAGAGGGGCCGGGAGGAGGACGCTTCCTGCCCAGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp GGGGAGACGTGTGCAAGGCCAAAGCCGCATGAGGTGGGATGGGGAACTGGGCAGTGGCCCCATAGGGCTTaGCACTGCCGGTCCCGGGTT +
Preference number: 4 (lower is better)
Translates to: GETCARPKPHEVGWGTGQWPHRA*HCRSRV
Trigger: AACCCGGGACCGGCAGTGCCAAGCCCTATGGGGCCA...CTGCCCAGTTCCCCATCCCACCTCATGCGGCTTTGGCCTTGCACACGTCTCCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp CTTCCCAGGCTCCCTGCAGGGCTTCGGGAATCGGATCGGTCCCAGCTCCCGGTCGCTCCAGGTCCAGAGTaGAGTTTGAGTCGAAGGCCG +
Preference number: 4 (lower is better)
Translates to: LPRLPAGLRESDRSQLPVAPGPE*SLSRRP
Trigger: CGGCCTTCGACTCAAACTTCACTCTGGACCTGGAGC...GACCGGGAGCTGGGACCGATCCGATTCCCGAAGCCCTGCAGGGAGCCTGGGAAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
CDS-3UTR GCA 90 bp CTAGGACAGTGGCACCTGGGGCTCAGCACTGAGGACCCCACTGTGGCCAACACCGAGCCATCAGCTAGCTaGACGTGGCCTCCCCTGCAG +
Preference number: 4 (lower is better)
Translates to: LGQWHLGLSTEDPTVANTEPSAS*TWPPLQ
Trigger: CTGCAGGGGAGGCCACGTGCAGCTAGCTGATGGCTC...GGTGTTGGCCACAGTGGGGTCCTCAGTGCTGAGCCCCAGGTGCCACTGTCCTAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CCCCAGCTGGGTTCCCTGACAGGATTCGTTTGGGCCTCCCAGGGAGGGATGTGGAGTGCAGAGCTCCTCTaGGACCCAGGGCCCCAAGAC +
Preference number: 4 (lower is better)
Translates to: PQLGSLTGFVWASQGGMWSAELL*DPGPQD
Trigger: GTCTTGGGGCCCTGGGTCCCAGAGGAGCTCTGCACT...CCACATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAGGGAACCCAGCTGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CCCCAGCTGGGTTCCCTGACAGGATTCGTTTGGGCCTCCCAGGGAGGGATGTGGTCTGGGCTCCCCACATaGGCTGAGCTCCTCCAGTGC +
Preference number: 4 (lower is better)
Translates to: PQLGSLTGFVWASQGGMWSGLPT*AELLQC
Trigger: GCACTGGAGGAGCTCAGCCCATGTGGGGAGCCCAGA...CCACATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAGGGAACCCAGCTGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CTCTGTGGCAGGGTGGAGGCAGCCTCGTGGTTCAGGGCCGAGATGGTGGGTGCCTTGGGGAGAGCAGACTaGGCAGGGACAGCAAACAGG +
Preference number: 4 (lower is better)
Translates to: LCGRVEAASWFRAEMVGALGRAD*AGTANR
Trigger: CCTGTTTGCTGTCCCTGCCCAGTCTGCTCTCCCCAA...GGCACCCACCATCTCGGCCCTGAACCACGAGGCTGCCTCCACCCTGCCACAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CTTCCCAGGCTCCCTGCAGGGCTTCGGGAATCGGATCGGTCCCAGCTCCCGGTCCTACCCGAGAAGAGGTaGGTGGCATCACTGGGCTCA +
Preference number: 4 (lower is better)
Translates to: LPRLPAGLRESDRSQLPVLPEKR*VASLGS
Trigger: TGAGCCCAGTGATGCCACCCACCTCTTCTCGGGTAG...GACCGGGAGCTGGGACCGATCCGATTCCCGAAGCCCTGCAGGGAGCCTGGGAAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
CDS-3UTR CCA 90 bp CCCCCAAAGCTGCCAGTGGGCCGTAGGCTCCAAGGTGCCGGCCACTGGGTTGGTCCGCTGCTGGTGCTCTaGAAGGTTCTACCCGAGAAG +
Preference number: 4 (lower is better)
Translates to: PPKLPVGRRLQGAGHWVGPLLVL*KVLPEK
Trigger: CTTCTCGGGTAGAACCTTCCAGAGCACCAGCAGCGG...ACCAACCCAGTGGCCGGCACCTTGGAGCCTACGGCCCACTGGCAGCTTTGGGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp CATGAGGTGGGATGGGGAACTGGGCAGGAAGCGTCCTCCTCCCGGCCCCTCTACGCTGGTGAGGACCACTaGCTGCCGCATCTGCTCAAA +
Preference number: 4 (lower is better)
Translates to: HEVGWGTGQEASSSRPLYAGEDH*LPHLLK
Trigger: TTTGAGCAGATGCGGCAGTCAGTGGTCCTCACCAGC...GTAGAGGGGCCGGGAGGAGGACGCTTCCTGCCCAGTTCCCCATCCCACCTCATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp GCAGAGGCGTGGATTCACATGTCTGCACCCAGGTGCACTGCCACCTGTGTGTGCCCGCCCCGCTGCTGGTaGTCTGGAAGGTTCTACCCG +
Preference number: 4 (lower is better)
Translates to: AEAWIHMSAPRCTATCVCPPRCW*SGRFYP
Trigger: CGGGTAGAACCTTCCAGAGCACCAGCAGCGGGGCGG...GCACACACAGGTGGCAGTGCACCTGGGTGCAGACATGTGAATCCACGCCTCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CATGAGGTGGGATGGGGAACTGGGCAGGAAGCGTCCTCCTCCCGGCCCCTCTACATCATGCCCAAGTTCTaGCCTAGCGTCTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: HEVGWGTGQEASSSRPLYIMPKF*PSVWAR
Trigger: CCTGGCCCAGACGCTAGGGCAGAACTTGGGCATGAT...GTAGAGGGGCCGGGAGGAGGACGCTTCCTGCCCAGTTCCCCATCCCACCTCATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CCCCCAAAGCTGCCAGTGGGCCGTAGGCTCCAAGGTGCCGGCCACTGGGTTGGTTGTATTCGTCGATGCTaGAGCGCGAGAACTTGCGGG +
Preference number: 4 (lower is better)
Translates to: PPKLPVGRRLQGAGHWVGCIRRC*SARTCG
Trigger: CCCGCAAGTTCTCGCGCTGCAGCATCGACGAATACA...ACCAACCCAGTGGCCGGCACCTTGGAGCCTACGGCCCACTGGCAGCTTTGGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp GGGTGGGGCAAGGGGATGCAGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGCCCAACCAGATCCCTTaGGTCCACAGTTTCCACGCT +
Preference number: 4 (lower is better)
Translates to: GWGKGMQEVGRLGWTGHRPNQIP*VHSFHA
Trigger: AGCGTGGAAACTGTGGACGCAAGGGATCTGGTTGGG...CCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCTGCATCCCCTTGCCCCACCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp ACGTGTGCAAGGCCAAAGCCGCATGAGGTGGGATGGGGAACTGGGCAGGAAGCGGAGCCATCAGCTAGCTaGACGTGGCCTCCCCTGCAG +
Preference number: 4 (lower is better)
Translates to: TCARPKPHEVGWGTGQEAEPSAS*TWPPLQ
Trigger: CTGCAGGGGAGGCCACGTGCAGCTAGCTGATGGCTC...CGCTTCCTGCCCAGTTCCCCATCCCACCTCATGCGGCTTTGGCCTTGCACACGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp ACTGGGCAGGAAGCGTCCTCCTCCCGGCCCCTCTACCCAGGTGGTCTGAAAGGCATGACGAAACTCACCTaGGCCAGGTGCACAGGCGTC +
Preference number: 4 (lower is better)
Translates to: TGQEASSSRPLYPGGLKGMTKLT*ARCTGV
Trigger: GACGCCTGTGCACCTGGCCCAGGTGAGTTTCGTCAT...GCCTTTCAGACCACCTGGGTAGAGGGGCCGGGAGGAGGACGCTTCCTGCCCAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CTGACAGGATTCGTTTGGGCCTCCCAGGGAGGGATGTGGGAGGTCTCAAGGCCTGGTGGGTGGCATCACTaGGCTCAGGCAGACCCTCCC +
Preference number: 4 (lower is better)
Translates to: LTGFVWASQGGMWEVSRPGGWHH*AQADPP
Trigger: GGGAGGGTCTGCCTGAGCCCAGTGATGCCACCCACC...AGGCCTTGAGACCTCCCACATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CAGTGGCACCTGGGGCTCAGCACTGAGGACCCCACTGTGGCCAACACCATCTGGCTAGGCACAACATGTTaGGCCCACAGGCCGTGCCGT +
Preference number: 4 (lower is better)
Translates to: QWHLGLSTEDPTVANTIWLGTTC*AHRPCR
Trigger: ACGGCACGGCCTGTGGGCCCAACATGTTGTGCCTAG...CCAGATGGTGTTGGCCACAGTGGGGTCCTCAGTGCTGAGCCCCAGGTGCCACTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp GGGGAGACGTGTGCAAGGCCAAAGCCGCATGAGGTGGGATGGGGAACTGGGCAGGCTCCAGGTCCAGAGTaGAGTTTGAGTCGAAGGCCG +
Preference number: 4 (lower is better)
Translates to: GETCARPKPHEVGWGTGQAPGPE*SLSRRP
Trigger: CGGCCTTCGACTCAAACTTCACTCTGGACCTGGAGC...CTGCCCAGTTCCCCATCCCACCTCATGCGGCTTTGGCCTTGCACACGTCTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp CCCGCTCCTCCCCAGAGGTCCTGGAGGCATCAAGTCACAAGCTGGCCAGGTGGGTTGCTGCAAACCCCATaGTGGGAGCAGATCCTTCGC +
Preference number: 4 (lower is better)
Translates to: PAPPQRSWRHQVTSWPGGLLQTP*WEQILR
Trigger: GCGAAGGATCTGCTCCCATCATGGGGTTTGCAGCAA...CCCACCTGGCCAGCTTGTGACTTGATGCCTCCAGGACCTCTGGGGAGGAGCGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
CDS-3UTR GCA 90 bp TATACCCCCGAATGCATGCACCCTGGCAGGGACAGGATGGTCAGTTTGGAATCGCTCACCTGGGCCAGGTaGACAGGCGTCCCCCTGGGC +
Preference number: 4 (lower is better)
Translates to: YTPECMHPGRDRMVSLESLTWAR*TGVPLG
Trigger: GCCCAGGGGGACGCCTGTGCACCTGGCCCAGGTGAG...CGATTCCAAACTGACCATCCTGTCCCTGCCAGGGTGCATGCATTCGGGGGTATA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp GGATGCAGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCCCGCCCCGCTGCTGGTaGTCTGGAAGGTTCTACCCG +
Preference number: 4 (lower is better)
Translates to: GCRKLDASGGLATGSLVFPPRCW*SGRFYP
Trigger: CGGGTAGAACCTTCCAGAGCACCAGCAGCGGGGCGG...GAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCTGCATCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp GGATGCAGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCCGTAGGCCGCCCCGCTaGTGGTGCTCTGGAAGGTTC +
Preference number: 4 (lower is better)
Translates to: GCRKLDASGGLATGSLVFRRPPR*WCSGRF
Trigger: GAACCTTCCAGAGCACCAGCAGCGGGGCGGCCTACG...GAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCTGCATCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CAGTGGCACCTGGGGCTCAGCACTGAGGACCCCACTGTGGCCAACACCATCTGGAACAGAGCCCATCGCTaGACATGGCGTCGTGCGTCA +
Preference number: 4 (lower is better)
Translates to: QWHLGLSTEDPTVANTIWNRAHR*TWRRAS
Trigger: TGACGCACGACGCCATGTGCAGCGATGGGCTCTGTT...CCAGATGGTGTTGGCCACAGTGGGGTCCTCAGTGCTGAGCCCCAGGTGCCACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CCCCAGCTGGGTTCCCTGACAGGATTCGTTTGGGCCTCCCAGGGAGGGATGTGGTTAGCTTGGGCCAGTTaGGGAGAGCAGACTGGGCAG +
Preference number: 4 (lower is better)
Translates to: PQLGSLTGFVWASQGGMWLAWAS*GEQTGQ
Trigger: CTGCCCAGTCTGCTCTCCCCAACTGGCCCAAGCTAA...CCACATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAGGGAACCCAGCTGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp AGGGCATGGAGCCAGAGCGTGTGTGTCTCACATAGGGTTGTGAAGGCTGGCCCTTCTCGCTGTGCACTGTaGGGTGGCCCCTGCGGACCT +
Preference number: 4 (lower is better)
Translates to: RAWSQSVCVSHRVVKAGPSRCAL*GGPCGP
Trigger: AGGTCCGCAGGGGCCACCCCACAGTGCACAGCGAGA...AGGGCCAGCCTTCACAACCCTATGTGAGACACACACGCTCTGGCTCCATGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CTGACAGGATTCGTTTGGGCCTCCCAGGGAGGGATGTGGGAGGTCTCAAGGCCTGCCCATCGCTGCACATaGCGTCGTGCGTCAAGGTGC +
Preference number: 4 (lower is better)
Translates to: LTGFVWASQGGMWEVSRPAHRCT*RRASRC
Trigger: GCACCTTGACGCACGACGCCATGTGCAGCGATGGGC...AGGCCTTGAGACCTCCCACATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp AGCCTGCTCTATCTTGCCCCGCCAGCTCTTAGGGCATGGAGCCAGAGCGTGTGTGCCCATCGCTGCACATaGCGTCGTGCGTCAAGGTGC +
Preference number: 4 (lower is better)
Translates to: SLLYLAPPALRAWSQSVCAHRCT*RRASRC
Trigger: GCACCTTGACGCACGACGCCATGTGCAGCGATGGGC...ACACACGCTCTGGCTCCATGCCCTAAGAGCTGGCGGGGCAAGATAGAGCAGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CATGAGGTGGGATGGGGAACTGGGCAGGAAGCGTCCTCCTCCCGGCCCCTCTACAGGGGACGTGGGCAGTaGGTTGTGAATACTGCAGTC +
Preference number: 4 (lower is better)
Translates to: HEVGWGTGQEASSSRPLYRGRGQ*VVNTAV
Trigger: GACTGCAGTATTCACAACCCACTGCCCACGTCCCCT...GTAGAGGGGCCGGGAGGAGGACGCTTCCTGCCCAGTTCCCCATCCCACCTCATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp ACGAGGACACACATGGTCATGCCCTTGTATGCAGAGGCCTTCACAGTGGTGCAGGCCGGCTGGGCTCTGTaGCCTCAGAGCCCTCTGGAC +
Preference number: 4 (lower is better)
Translates to: TRTHMVMPLYAEAFTVVQAGWAL*PQSPLD
Trigger: GTCCAGAGGGCTCTGAGGTCACAGAGCCCAGCCGGC...CTGCACCACTGTGAAGGCCTCTGCATACAAGGGCATGACCATGTGTGTCCTCGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp GGGGAGACGTGTGCAAGGCCAAAGCCGCATGAGGTGGGATGGGGAACTGGGCAGGAGCTCCAGAGATGTTaGCGCACAGAAGGAAGCCAC +
Preference number: 4 (lower is better)
Translates to: GETCARPKPHEVGWGTGQELQRC*RTEGSH
Trigger: GTGGCTTCCTTCTGTGCGTCAACATCTCTGGAGCTC...CTGCCCAGTTCCCCATCCCACCTCATGCGGCTTTGGCCTTGCACACGTCTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp CTAGGACAGTGGCACCTGGGGCTCAGCACTGAGGACCCCACTGTGGCCAACACCTTGCTGCAAACCCCATaGTGGGAGCAGATCCTTCGC +
Preference number: 4 (lower is better)
Translates to: LGQWHLGLSTEDPTVANTLLQTP*WEQILR
Trigger: GCGAAGGATCTGCTCCCATCATGGGGTTTGCAGCAA...GGTGTTGGCCACAGTGGGGTCCTCAGTGCTGAGCCCCAGGTGCCACTGTCCTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp CAGCTCTCAGGCTGGGCGGCAGCAAGGACCAGTCAGGAGGGCAGACAGGAACATCCTGTCCAGTCTGGCTaGCAGATACACTTCCCCTCG +
Preference number: 4 (lower is better)
Translates to: QLSGWAAARTSQEGRQEHPVQSG*QIHFPS
Trigger: CGAGGGGAAGTGTATCTGTCAGCCAGACTGGACAGG...ATGTTCCTGTCTGCCCTCCTGACTGGTCCTTGCTGCCGCCCAGCCTGAGAGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CAGTGGCACCTGGGGCTCAGCACTGAGGACCCCACTGTGGCCAACACCATCTGGGTGAGGACCACTGACTaGCGCATCTGCTCAAACAGC +
Preference number: 4 (lower is better)
Translates to: QWHLGLSTEDPTVANTIWVRTTD*RICSNS
Trigger: GCTGTTTGAGCAGATGCGGCAGTCAGTGGTCCTCAC...CCAGATGGTGTTGGCCACAGTGGGGTCCTCAGTGCTGAGCCCCAGGTGCCACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CCCGCTCCTCCCCAGAGGTCCTGGAGGCATCAAGTCACAAGCTGGCCAGGTGGGTCCAGTAGGTCATCCTaGACCTGGATCTTGTCCCCA +
Preference number: 4 (lower is better)
Translates to: PAPPQRSWRHQVTSWPGGSSRSS*TWILSP
Trigger: TGGGGACAAGATCCAGGTGCAGGATGACCTACTGGA...CCCACCTGGCCAGCTTGTGACTTGATGCCTCCAGGACCTCTGGGGAGGAGCGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
CDS-3UTR GCA 90 bp ACTGGGCAGGAAGCGTCCTCCTCCCGGCCCCTCTACCCAGGTGGTCTGAAAGGCGGTTGTATTCGTCGATaGTGCAGCGCGAGAACTTGC +
Preference number: 4 (lower is better)
Translates to: TGQEASSSRPLYPGGLKGGCIRR*CSARTC
Trigger: GCAAGTTCTCGCGCTGCAGCATCGACGAATACAACC...GCCTTTCAGACCACCTGGGTAGAGGGGCCGGGAGGAGGACGCTTCCTGCCCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CAGTGGCACCTGGGGCTCAGCACTGAGGACCCCACTGTGGCCAACACCATCTGGCTCCCGCCTCCCTCCTaGAGAAACTGGTTGTATTCG +
Preference number: 4 (lower is better)
Translates to: QWHLGLSTEDPTVANTIWLPPPS*RNWLYS
Trigger: CGAATACAACCAGTTTCTGCAGGAGGGAGGCGGGAG...CCAGATGGTGTTGGCCACAGTGGGGTCCTCAGTGCTGAGCCCCAGGTGCCACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp AGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCTTCACCGGTGGGTGGCATCACTaGGCTCAGGCAGACCCTCCC +
Preference number: 4 (lower is better)
Translates to: RKLDASGGLATGSLVFFTGGWHH*AQADPP
Trigger: GGGAGGGTCTGCCTGAGCCCAGTGATGCCACCCACC...GGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp TGCATGCACCCTGGCAGGGACAGGATGGTCAGTTTGGAATCGAAGACAGTCTGGTGCCGCCCAGGACGATaGCTGCGACCAGGACAGCCC +
Preference number: 4 (lower is better)
Translates to: CMHPGRDRMVSLESKTVWCRPGR*LRPGQP
Trigger: GGGCTGTCCTGGTCGCAGCCATCGTCCTGGGCGGCA...CCAGACTGTCTTCGATTCCAAACTGACCATCCTGTCCCTGCCAGGGTGCATGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp AGGGCATGGAGCCAGAGCGTGTGTGTCTCACATAGGGTTGTGAAGGCTGGCCCTCACACTGCCCCCTGCTaGGTCGGGTCGTACCTTCCA +
Preference number: 4 (lower is better)
Translates to: RAWSQSVCVSHRVVKAGPHTAPC*VGSYLP
Trigger: TGGAAGGTACGACCCGACCCAGCAGGGGGCAGTGTG...AGGGCCAGCCTTCACAACCCTATGTGAGACACACACGCTCTGGCTCCATGCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
3UTR CAA 72 bp CACAGTCCCAACCCCCAACCCCTGTGCAGCCAGGAGTaGAAGGGTTCGGACCCGGAAGACATTTGCACGGTG +
Preference number: 4 (lower is better)
Translates to: HSPNPQPLCSQE*KGSDPEDICTV
Trigger: CACCGTGCAAATGTCTTCCGGGTCCGAACCCTTCAACTCCTGGCTGCACAGGGGTTGGGGGTTGGGACTGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp CCCTGGCAGGGACAGGATGGTCAGTTTGGAATCGAAGACAGTCTGGGACAGAGTGCTCCCCACATGGGCTaGGCTCCTCCAGTGCAGAGC +
Preference number: 4 (lower is better)
Translates to: PWQGQDGQFGIEDSLGQSAPHMG*APPVQS
Trigger: GCTCTGCACTGGAGGAGCTCAGCCCATGTGGGGAGC...ACTCTGTCCCAGACTGTCTTCGATTCCAAACTGACCATCCTGTCCCTGCCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp CCCATCTCCTCATACACATCACAGGCACTAACCCTGGGGCACAGGGCCACCCCTGCTGGCAGGCAGCGGTaGTCTAGGCACAACATGTTG +
Preference number: 4 (lower is better)
Translates to: PISSYTSQALTLGHRATPAGRQR*SRHNML
Trigger: CAACATGTTGTGCCTAGATCACCGCTGCCTGCCAGC...AGGGGTGGCCCTGTGCCCCAGGGTTAGTGCCTGTGATGTGTATGAGGAGATGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp ACGTGTGCAAGGCCAAAGCCGCATGAGGTGGGATGGGGAACTGGGCAGGAAGCGGTGAGGACCACTGACTaGCGCATCTGCTCAAACAGC +
Preference number: 4 (lower is better)
Translates to: TCARPKPHEVGWGTGQEAVRTTD*RICSNS
Trigger: GCTGTTTGAGCAGATGCGGCAGTCAGTGGTCCTCAC...CGCTTCCTGCCCAGTTCCCCATCCCACCTCATGCGGCTTTGGCCTTGCACACGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CCCCAGCTGGGTTCCCTGACAGGATTCGTTTGGGCCTCCCAGGGAGGGATGTGGGATCTTGTCCCCATCTaGCCACGTTTCCATGGCAAC +
Preference number: 4 (lower is better)
Translates to: PQLGSLTGFVWASQGGMWDLVPI*PRFHGN
Trigger: GTTGCCATGGAAACGTGGGCAGATGGGGACAAGATC...CCACATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAGGGAACCCAGCTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp GAACAGCCAGGCCACATCAGGGGGCACCTGAACCCTGAGACAGCCCCAGAATCAATCATGCCCAAGTTCTaGCCTAGCGTCTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: EQPGHIRGHLNPETAPESIMPKF*PSVWAR
Trigger: CCTGGCCCAGACGCTAGGGCAGAACTTGGGCATGAT...TGATTCTGGGGCTGTCTCAGGGTTCAGGTGCCCCCTGATGTGGCCTGGCTGTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp ACAGGCACTAACCCTGGGGCACAGGGCCACCCCTGGTTCTCCCTACTGAGAGTCTGCAGCGCGAGAACTTaGGGGGCAAATAGAACCCAG +
Preference number: 4 (lower is better)
Translates to: TGTNPGAQGHPWFSLLRVCSART*GANRTQ
Trigger: CTGGGTTCTATTTGCCCCGCAAGTTCTCGCGCTGCA...GACTCTCAGTAGGGAGAACCAGGGGTGGCCCTGTGCCCCAGGGTTAGTGCCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CTGGGTTCCCTGACAGGATTCGTTTGGGCCTCCCAGGGAGGGATGTGGGAGGTCTGCAGCGCGAGAACTTaGGGGGCAAATAGAACCCAG +
Preference number: 4 (lower is better)
Translates to: LGSLTGFVWASQGGMWEVCSART*GANRTQ
Trigger: CTGGGTTCTATTTGCCCCGCAAGTTCTCGCGCTGCA...GACCTCCCACATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAGGGAACCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp GTCTGTGATGATGGAGGCTACATTCACAGGGGGAGACGTGTGCAAGGCCAAAGCGCAGCAGTTGCCCCCTaGTCGGCTGCACTCCTGCAC +
Preference number: 4 (lower is better)
Translates to: VCDDGGYIHRGRRVQGQSAAVAP*SAALLH
Trigger: GTGCAGGAGTGCAGCCGAGCAGGGGGCAACTGCTGC...GCTTTGGCCTTGCACACGTCTCCCCCTGTGAATGTAGCCTCCATCATCACAGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CTGACAGGATTCGTTTGGGCCTCCCAGGGAGGGATGTGGGAGGTCTCAAGGCCTAACAGAGCCCATCGCTaGACATGGCGTCGTGCGTCA +
Preference number: 4 (lower is better)
Translates to: LTGFVWASQGGMWEVSRPNRAHR*TWRRAS
Trigger: TGACGCACGACGCCATGTGCAGCGATGGGCTCTGTT...AGGCCTTGAGACCTCCCACATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CCCCAGCTGGGTTCCCTGACAGGATTCGTTTGGGCCTCCCAGGGAGGGATGTGGGCCGGTGCAGGTCTCTaGAATGTCACACTCATTCAC +
Preference number: 4 (lower is better)
Translates to: PQLGSLTGFVWASQGGMWAGAGL*NVTLIH
Trigger: GTGAATGAGTGTGACATTGCAGAGACCTGCACCGGC...CCACATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAGGGAACCCAGCTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp TATACCCCCGAATGCATGCACCCTGGCAGGGACAGGATGGTCAGTTTGGAATCGTCTCGCTGTGCACTGTaGGGTGGCCCCTGCGGACCT +
Preference number: 4 (lower is better)
Translates to: YTPECMHPGRDRMVSLESSRCAL*GGPCGP
Trigger: AGGTCCGCAGGGGCCACCCCACAGTGCACAGCGAGA...CGATTCCAAACTGACCATCCTGTCCCTGCCAGGGTGCATGCATTCGGGGGTATA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAGAAAATGTAGATCAGCCCCTTCCCGTGAGGGCCGGCTGGGCTCTGTaGCCTCAGAGCCCTCTGGAC +
Preference number: 4 (lower is better)
Translates to: ERERERERENVDQPLPVRAGWAL*PQSPLD
Trigger: GTCCAGAGGGCTCTGAGGTCACAGAGCCCAGCCGGC...CCTCACGGGAAGGGGCTGATCTACATTTTCTCTCTCTCTCTCTCTCTCTCTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp GCAAGGGGATGCAGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTTTGCAAAGTTGCTGGTaGGGACCACTGACTGCCGCA +
Preference number: 4 (lower is better)
Translates to: ARGCRKLDASGGLATGSLLQSCW*GPLTAA
Trigger: TGCGGCAGTCAGTGGTCCTCACCAGCAACTTTGCAA...AAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCTGCATCCCCTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp ACGTGTGCAAGGCCAAAGCCGCATGAGGTGGGATGGGGAACTGGGCAGGAAGCGGTGGGCAGTGGGTTGTaGATACTGCAGTCTTTGCCT +
Preference number: 4 (lower is better)
Translates to: TCARPKPHEVGWGTGQEAVGSGL*ILQSLP
Trigger: AGGCAAAGACTGCAGTATTCACAACCCACTGCCCAC...CGCTTCCTGCCCAGTTCCCCATCCCACCTCATGCGGCTTTGGCCTTGCACACGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp GTCTGTGATGATGGAGGCTACATTCACAGGGGGAGACGTGTGCAAGGCCAAAGCGCTGAGCTCCTCCAGTaGAGAGCTCCTCTGGGACCC +
Preference number: 4 (lower is better)
Translates to: VCDDGGYIHRGRRVQGQSAELLQ*RAPLGP
Trigger: GGGTCCCAGAGGAGCTCTGCACTGGAGGAGCTCAGC...GCTTTGGCCTTGCACACGTCTCCCCCTGTGAATGTAGCCTCCATCATCACAGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp TCACCTATAACCATCCACGAGGCCTGCCCTTTCCCCATCTCCTCATACACATCATCTCCCCCGGAGCTCTaGCTTACCAGCCGGCTGGGC +
Preference number: 4 (lower is better)
Translates to: SPITIHEACPFPISSYTSSPPEL*LTSRLG
Trigger: GCCCAGCCGGCTGGTAAGGCAGAGCTCCGGGGGAGA...TGATGTGTATGAGGAGATGGGGAAAGGGCAGGCCTCGTGGATGGTTATAGGTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CCCATCTCCTCATACACATCACAGGCACTAACCCTGGGGCACAGGGCCACCCCTTGTATTCGTCGATGCTaGAGCGCGAGAACTTGCGGG +
Preference number: 4 (lower is better)
Translates to: PISSYTSQALTLGHRATPCIRRC*SARTCG
Trigger: CCCGCAAGTTCTCGCGCTGCAGCATCGACGAATACA...AGGGGTGGCCCTGTGCCCCAGGGTTAGTGCCTGTGATGTGTATGAGGAGATGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp TGCACCCTGGCAGGGACAGGATGGTCAGTTTGGAATCGAAGACAGTCTGGGACATGGGCCCACAGGCCGTaGCGTCCTCCACATAGCTCA +
Preference number: 4 (lower is better)
Translates to: CTLAGTGWSVWNRRQSGTWAHRP*RPPHSS
Trigger: TGAGCTATGTGGAGGACGGCACGGCCTGTGGGCCCA...TGTCCCAGACTGTCTTCGATTCCAAACTGACCATCCTGTCCCTGCCAGGGTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp TCAGGAGAGGACTTGAGGCTGGGCTCTGAGGGTGAGCCCTCTAGTTGCCCCGCTTACACTTCCCCTCGTTaGTGCAAACCCCATGATGGG +
Preference number: 4 (lower is better)
Translates to: SGEDLRLGSEGEPSSCPAYTSPR*CKPHDG
Trigger: CCCATCATGGGGTTTGCAGCAACGAGGGGAAGTGTA...AGCGGGGCAACTAGAGGGCTCACCCTCAGAGCCCAGCCTCAAGTCCTCTCCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
CDS-3UTR GCA 90 bp ACTGGGCAGGAAGCGTCCTCCTCCCGGCCCCTCTACCCAGGTGGTCTGAAAGGCGTGGGTTGTGAATACTaGAGTCTTTGCCTGTCCAGT +
Preference number: 4 (lower is better)
Translates to: TGQEASSSRPLYPGGLKGVGCEY*SLCLSS
Trigger: ACTGGACAGGCAAAGACTGCAGTATTCACAACCCAC...GCCTTTCAGACCACCTGGGTAGAGGGGCCGGGAGGAGGACGCTTCCTGCCCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CAGATGACATATTTACAGGATGCGGAGGGACCCAGGTCTGGGCCAGGTGAATGCTCTGGGCTCCCCACATaGGCTGAGCTCCTCCAGTGC +
Preference number: 4 (lower is better)
Translates to: QMTYLQDAEGPRSGPGECSGLPT*AELLQC
Trigger: GCACTGGAGGAGCTCAGCCCATGTGGGGAGCCCAGA...GCATTCACCTGGCCCAGACCTGGGTCCCTCCGCATCCTGTAAATATGTCATCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp TGGTGCAGAGGCGTGGATTCACATGTCTGCACCCAGGTGCACTGCCACCTGTGTGATCCTGGCGGACCCTaGTGTCCAACTGTGGCTTTC +
Preference number: 4 (lower is better)
Translates to: WCRGVDSHVCTQVHCHLCDPGGP*CPTVAF
Trigger: GAAAGCCACAGTTGGACACCAGGGTCCGCCAGGATC...ACACAGGTGGCAGTGCACCTGGGTGCAGACATGTGAATCCACGCCTCTGCACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CCCTGGCAGGGACAGGATGGTCAGTTTGGAATCGAAGACAGTCTGGGACAGAGTCCCTCCCGGCTGAAGTaGCGCTCCACATACTGCGAG +
Preference number: 4 (lower is better)
Translates to: PWQGQDGQFGIEDSLGQSPSRLK*RSTYCE
Trigger: CTCGCAGTATGTGGAGCGCCACTTCAGCCGGGAGGG...ACTCTGTCCCAGACTGTCTTCGATTCCAAACTGACCATCCTGTCCCTGCCAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp GCAGAGGCGTGGATTCACATGTCTGCACCCAGGTGCACTGCCACCTGTGTGTGCAGGTCATCCTGCACCTaGATCTTGTCCCCATCTGCC +
Preference number: 4 (lower is better)
Translates to: AEAWIHMSAPRCTATCVCRSSCT*ILSPSA
Trigger: GGCAGATGGGGACAAGATCCAGGTGCAGGATGACCT...GCACACACAGGTGGCAGTGCACCTGGGTGCAGACATGTGAATCCACGCCTCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp TATACCCCCGAATGCATGCACCCTGGCAGGGACAGGATGGTCAGTTTGGAATCGAGGCCGCCCCGCTGCTaGTGCTCTGGAAGGTTCTAC +
Preference number: 4 (lower is better)
Translates to: YTPECMHPGRDRMVSLESRPPRC*CSGRFY
Trigger: GTAGAACCTTCCAGAGCACCAGCAGCGGGGCGGCCT...CGATTCCAAACTGACCATCCTGTCCCTGCCAGGGTGCATGCATTCGGGGGTATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp GTCTGTGATGATGGAGGCTACATTCACAGGGGGAGACGTGTGCAAGGCCAAAGCTTCTGCCCTAGCGTCTaGGCCAGGGTCACCGCCATG +
Preference number: 4 (lower is better)
Translates to: VCDDGGYIHRGRRVQGQSFCPSV*ARVTAM
Trigger: CATGGCGGTGACCCTGGCCCAGACGCTAGGGCAGAA...GCTTTGGCCTTGCACACGTCTCCCCCTGTGAATGTAGCCTCCATCATCACAGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CCTGATGGAGGTCTCGAGGTATCCCAGCAACAATGCAAAATGCAGCCTTTCCCCTGGCCCCATAGGGCTTaGCACTGCCGGTCCCGGGTT +
Preference number: 4 (lower is better)
Translates to: PDGGLEVSQQQCKMQPFPWPHRA*HCRSRV
Trigger: AACCCGGGACCGGCAGTGCCAAGCCCTATGGGGCCA...GGGGAAAGGCTGCATTTTGCATTGTTGCTGGGATACCTCGAGACCTCCATCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp TCACCTATAACCATCCACGAGGCCTGCCCTTTCCCCATCTCCTCATACACATCATGCCGCCCAGGACGATaGCTGCGACCAGGACAGCCC +
Preference number: 4 (lower is better)
Translates to: SPITIHEACPFPISSYTSCRPGR*LRPGQP
Trigger: GGGCTGTCCTGGTCGCAGCCATCGTCCTGGGCGGCA...TGATGTGTATGAGGAGATGGGGAAAGGGCAGGCCTCGTGGATGGTTATAGGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CCTGATGGAGGTCTCGAGGTATCCCAGCAACAATGCAAAATGCAGCCTTTCCCCGCTGAGCTCCTCCAGTaGAGAGCTCCTCTGGGACCC +
Preference number: 4 (lower is better)
Translates to: PDGGLEVSQQQCKMQPFPAELLQ*RAPLGP
Trigger: GGGTCCCAGAGGAGCTCTGCACTGGAGGAGCTCAGC...GGGGAAAGGCTGCATTTTGCATTGTTGCTGGGATACCTCGAGACCTCCATCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CCCCCAAAGCTGCCAGTGGGCCGTAGGCTCCAAGGTGCCGGCCACTGGGTTGGTGTTCACAACAGATTTTaGAAAGTTGCTGGTGAGGAC +
Preference number: 4 (lower is better)
Translates to: PPKLPVGRRLQGAGHWVGVHNRF*KVAGED
Trigger: GTCCTCACCAGCAACTTTGCAAAATCTGTTGTGAAC...ACCAACCCAGTGGCCGGCACCTTGGAGCCTACGGCCCACTGGCAGCTTTGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp TGGCTACCCCCAAAGCTGCCAGTGGGCCGTAGGCTCCAAGGTGCCGGCCACTGGGTTCACAACAGATTTTaGAAAGTTGCTGGTGAGGAC +
Preference number: 4 (lower is better)
Translates to: WLPPKLPVGRRLQGAGHWVHNRF*KVAGED
Trigger: GTCCTCACCAGCAACTTTGCAAAATCTGTTGTGAAC...CCAGTGGCCGGCACCTTGGAGCCTACGGCCCACTGGCAGCTTTGGGGGTAGCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CTGGGTTCCCTGACAGGATTCGTTTGGGCCTCCCAGGGAGGGATGTGGGAGGTCGAATACTGCAGTCTTTaGCTGTCCAGTCTGGCTGAC +
Preference number: 4 (lower is better)
Translates to: LGSLTGFVWASQGGMWEVEYCSL*LSSLAD
Trigger: GTCAGCCAGACTGGACAGGCAAAGACTGCAGTATTC...GACCTCCCACATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAGGGAACCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp ACGTGTGCAAGGCCAAAGCCGCATGAGGTGGGATGGGGAACTGGGCAGGAAGCGTCAACTCCACATACTTaGTCTCGCTGTGCACTGTGG +
Preference number: 4 (lower is better)
Translates to: TCARPKPHEVGWGTGQEASTPHT*SRCALW
Trigger: CCACAGTGCACAGCGAGACCAAGTATGTGGAGTTGA...CGCTTCCTGCCCAGTTCCCCATCCCACCTCATGCGGCTTTGGCCTTGCACACGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp TGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCTTCACCAAGGACACCGCTGCTGGTGCTCTaGAAGGTTCTACCCGAGAAG +
Preference number: 4 (lower is better)
Translates to: WTPRVDWPQEVLCSSPRTPLLVL*KVLPEK
Trigger: CTTCTCGGGTAGAACCTTCCAGAGCACCAGCAGCGG...TGTCCTTGGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp TCAGGAGAGGACTTGAGGCTGGGCTCTGAGGGTGAGCCCTCTAGTTGCCCCGCTCCCTCCTGCAGAAACTaGTTGTATTCGTCGATGCTG +
Preference number: 4 (lower is better)
Translates to: SGEDLRLGSEGEPSSCPAPSCRN*LYSSML
Trigger: CAGCATCGACGAATACAACCAGTTTCTGCAGGAGGG...AGCGGGGCAACTAGAGGGCTCACCCTCAGAGCCCAGCCTCAAGTCCTCTCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
CDS-3UTR CCA 90 bp CCCTGGCAGGGACAGGATGGTCAGTTTGGAATCGAAGACAGTCTGGGACAGAGTTCAGCTAGCTGCACGTaGCCTCCCCTGCAGTCCAAC +
Preference number: 4 (lower is better)
Translates to: PWQGQDGQFGIEDSLGQSSASCT*PPLQSN
Trigger: GTTGGACTGCAGGGGAGGCCACGTGCAGCTAGCTGA...ACTCTGTCCCAGACTGTCTTCGATTCCAAACTGACCATCCTGTCCCTGCCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CAGATGACATATTTACAGGATGCGGAGGGACCCAGGTCTGGGCCAGGTGAATGCTCAGCTAGCTGCACGTaGCCTCCCCTGCAGTCCAAC +
Preference number: 4 (lower is better)
Translates to: QMTYLQDAEGPRSGPGECSASCT*PPLQSN
Trigger: GTTGGACTGCAGGGGAGGCCACGTGCAGCTAGCTGA...GCATTCACCTGGCCCAGACCTGGGTCCCTCCGCATCCTGTAAATATGTCATCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp GTCTGTGATGATGGAGGCTACATTCACAGGGGGAGACGTGTGCAAGGCCAAAGCCTAGGCACAACATGTTaGGCCCACAGGCCGTGCCGT +
Preference number: 4 (lower is better)
Translates to: VCDDGGYIHRGRRVQGQSLGTTC*AHRPCR
Trigger: ACGGCACGGCCTGTGGGCCCAACATGTTGTGCCTAG...GCTTTGGCCTTGCACACGTCTCCCCCTGTGAATGTAGCCTCCATCATCACAGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp GTGGCAGTCTGTGATGATGGAGGCTACATTCACAGGGGGAGACGTGTGCAAGGCACCCAGTGTCCTCCATaGTGCAGCCCAGCCAAATGT +
Preference number: 4 (lower is better)
Translates to: VAVCDDGGYIHRGRRVQGTQCPP*CSPAKC
Trigger: ACATTTGGCTGGGCTGCATCATGGAGGACACTGGGT...GCCTTGCACACGTCTCCCCCTGTGAATGTAGCCTCCATCATCACAGACTGCCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp CATGGTCATGCCCTTGTATGCAGAGGCCTTCACAGTGGTGCAGAGGCGTGGATTCCTGTCCAGTCTGGCTaGCAGATACACTTCCCCTCG +
Preference number: 4 (lower is better)
Translates to: HGHALVCRGLHSGAEAWIPVQSG*QIHFPS
Trigger: CGAGGGGAAGTGTATCTGTCAGCCAGACTGGACAGG...AATCCACGCCTCTGCACCACTGTGAAGGCCTCTGCATACAAGGGCATGACCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp AGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCTTCACCTGGCCCCTGCGGACCTaGCTTTTCCTTCTTAGCTTG +
Preference number: 4 (lower is better)
Translates to: RKLDASGGLATGSLVFFTWPLRT*LFLLSL
Trigger: CAAGCTAAGAAGGAAAAGGCAGGTCCGCAGGGGCCA...GGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp AGGGCATGGAGCCAGAGCGTGTGTGTCTCACATAGGGTTGTGAAGGCTGGCCCTCCATGGCACCCATGTTaGCATACTCGTTCACACCTC +
Preference number: 4 (lower is better)
Translates to: RAWSQSVCVSHRVVKAGPPWHPC*HTRSHL
Trigger: GAGGTGTGAACGAGTATGGCAACATGGGTGCCATGG...AGGGCCAGCCTTCACAACCCTATGTGAGACACACACGCTCTGGCTCCATGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CATGGTCATGCCCTTGTATGCAGAGGCCTTCACAGTGGTGCAGAGGCGTGGATTGATCCTGGCGGACCCTaGTGTCCAACTGTGGCTTTC +
Preference number: 4 (lower is better)
Translates to: HGHALVCRGLHSGAEAWIDPGGP*CPTVAF
Trigger: GAAAGCCACAGTTGGACACCAGGGTCCGCCAGGATC...AATCCACGCCTCTGCACCACTGTGAAGGCCTCTGCATACAAGGGCATGACCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp TCACCTATAACCATCCACGAGGCCTGCCCTTTCCCCATCTCCTCATACACATCACCCTCCCGGCTGAAGTaGCGCTCCACATACTGCGAG +
Preference number: 4 (lower is better)
Translates to: SPITIHEACPFPISSYTSPSRLK*RSTYCE
Trigger: CTCGCAGTATGTGGAGCGCCACTTCAGCCGGGAGGG...TGATGTGTATGAGGAGATGGGGAAAGGGCAGGCCTCGTGGATGGTTATAGGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CCCTGGCAGGGACAGGATGGTCAGTTTGGAATCGAAGACAGTCTGGGACAGAGTTTAGCTTGGGCCAGTTaGGGAGAGCAGACTGGGCAG +
Preference number: 4 (lower is better)
Translates to: PWQGQDGQFGIEDSLGQSLAWAS*GEQTGQ
Trigger: CTGCCCAGTCTGCTCTCCCCAACTGGCCCAAGCTAA...ACTCTGTCCCAGACTGTCTTCGATTCCAAACTGACCATCCTGTCCCTGCCAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CCCATCTCCTCATACACATCACAGGCACTAACCCTGGGGCACAGGGCCACCCCTTTTTCCTTCTTAGCTTaGGCCAGTTGGGGAGAGCAG +
Preference number: 4 (lower is better)
Translates to: PISSYTSQALTLGHRATPFSFLA*ASWGEQ
Trigger: CTGCTCTCCCCAACTGGCCCAAGCTAAGAAGGAAAA...AGGGGTGGCCCTGTGCCCCAGGGTTAGTGCCTGTGATGTGTATGAGGAGATGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CAGCAAGGACCAGTCAGGAGGGCAGACAGGAACATCTGTAAACTTACTACTCAGCTGTGCACTGTGGGGTaGCCCCTGCGGACCTGCCTT +
Preference number: 4 (lower is better)
Translates to: QQGPVRRADRNICKLTTQLCTVG*PLRTCL
Trigger: AAGGCAGGTCCGCAGGGGCCACCCCACAGTGCACAG...CTGAGTAGTAAGTTTACAGATGTTCCTGTCTGCCCTCCTGACTGGTCCTTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp AGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCTTCACCAGGTCATCCTGCACCTaGATCTTGTCCCCATCTGCC +
Preference number: 4 (lower is better)
Translates to: RKLDASGGLATGSLVFFTRSSCT*ILSPSA
Trigger: GGCAGATGGGGACAAGATCCAGGTGCAGGATGACCT...GGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAGAAAATGTAGATCAGCCCCTTCCCGTGAGGTTCTGCCCTAGCGTCTaGGCCAGGGTCACCGCCATG +
Preference number: 4 (lower is better)
Translates to: ERERERERENVDQPLPVRFCPSV*ARVTAM
Trigger: CATGGCGGTGACCCTGGCCCAGACGCTAGGGCAGAA...CCTCACGGGAAGGGGCTGATCTACATTTTCTCTCTCTCTCTCTCTCTCTCTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CAGATGACATATTTACAGGATGCGGAGGGACCCAGGTCTGGGCCAGGTGAATGCGCCCAGCCAAATGTCTaGACACTTGCAGTCCCCTGC +
Preference number: 4 (lower is better)
Translates to: QMTYLQDAEGPRSGPGECAQPNV*TLAVPC
Trigger: GCAGGGGACTGCAAGTGTCCAGACATTTGGCTGGGC...GCATTCACCTGGCCCAGACCTGGGTCCCTCCGCATCCTGTAAATATGTCATCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp GTCTGTGATGATGGAGGCTACATTCACAGGGGGAGACGTGTGCAAGGCCAAAGCGCCCAGCCAAATGTCTaGACACTTGCAGTCCCCTGC +
Preference number: 4 (lower is better)
Translates to: VCDDGGYIHRGRRVQGQSAQPNV*TLAVPC
Trigger: GCAGGGGACTGCAAGTGTCCAGACATTTGGCTGGGC...GCTTTGGCCTTGCACACGTCTCCCCCTGTGAATGTAGCCTCCATCATCACAGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp AGCCTGCTCTATCTTGCCCCGCCAGCTCTTAGGGCATGGAGCCAGAGCGTGTGTCCCTCCTGCAGAAACTaGTTGTATTCGTCGATGCTG +
Preference number: 4 (lower is better)
Translates to: SLLYLAPPALRAWSQSVCPSCRN*LYSSML
Trigger: CAGCATCGACGAATACAACCAGTTTCTGCAGGAGGG...ACACACGCTCTGGCTCCATGCCCTAAGAGCTGGCGGGGCAAGATAGAGCAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp TGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCTTCACCAAGGACAAGGGGACGTGGGCAGTaGGTTGTGAATACTGCAGTC +
Preference number: 4 (lower is better)
Translates to: WTPRVDWPQEVLCSSPRTRGRGQ*VVNTAV
Trigger: GACTGCAGTATTCACAACCCACTGCCCACGTCCCCT...TGTCCTTGGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CAA 72 bp AGTTGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTaGTGTTCTTCACCAAGGACACGAGGACACACATGG +
Preference number: 4 (lower is better)
Translates to: SWTPRVDWPQEV*CSSPRTRGHTW
Trigger: CCATGTGTGTCCTCGTGTCCTTGGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp CCTGATGGAGGTCTCGAGGTATCCCAGCAACAATGCAAAATGCAGCCTTTCCCCGCTGGTGAGGACCACTaGCTGCCGCATCTGCTCAAA +
Preference number: 4 (lower is better)
Translates to: PDGGLEVSQQQCKMQPFPAGEDH*LPHLLK
Trigger: TTTGAGCAGATGCGGCAGTCAGTGGTCCTCACCAGC...GGGGAAAGGCTGCATTTTGCATTGTTGCTGGGATACCTCGAGACCTCCATCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp CTTCCCAGGCTCCCTGCAGGGCTTCGGGAATCGGATCGGTCCCAGCTCCCGGTCGAACAATTCTTGTGTTaGGCTGTTCCTTGTATATCA +
Preference number: 4 (lower is better)
Translates to: LPRLPAGLRESDRSQLPVEQFLC*AVPCIS
Trigger: TGATATACAAGGAACAGCTCAACACAAGAATTGTTC...GACCGGGAGCTGGGACCGATCCGATTCCCGAAGCCCTGCAGGGAGCCTGGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068150.7
CDS-3UTR TCA 90 bp AGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCTTCACCGTGGGCAGTGGGTTGTaGATACTGCAGTCTTTGCCT +
Preference number: 4 (lower is better)
Translates to: RKLDASGGLATGSLVFFTVGSGL*ILQSLP
Trigger: AGGCAAAGACTGCAGTATTCACAACCCACTGCCCAC...GGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CCCTGGCAGGGACAGGATGGTCAGTTTGGAATCGAAGACAGTCTGGGACAGAGTTGGCCCCTGCGGACCTaGCTTTTCCTTCTTAGCTTG +
Preference number: 4 (lower is better)
Translates to: PWQGQDGQFGIEDSLGQSWPLRT*LFLLSL
Trigger: CAAGCTAAGAAGGAAAAGGCAGGTCCGCAGGGGCCA...ACTCTGTCCCAGACTGTCTTCGATTCCAAACTGACCATCCTGTCCCTGCCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp AGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCTTCACCTCCAGTAGGTCATCCTaGACCTGGATCTTGTCCCCA +
Preference number: 4 (lower is better)
Translates to: RKLDASGGLATGSLVFFTSSRSS*TWILSP
Trigger: TGGGGACAAGATCCAGGTGCAGGATGACCTACTGGA...GGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CAGATGACATATTTACAGGATGCGGAGGGACCCAGGTCTGGGCCAGGTGAATGCCTCCCGCCTCCCTCCTaGAGAAACTGGTTGTATTCG +
Preference number: 4 (lower is better)
Translates to: QMTYLQDAEGPRSGPGECLPPPS*RNWLYS
Trigger: CGAATACAACCAGTTTCTGCAGGAGGGAGGCGGGAG...GCATTCACCTGGCCCAGACCTGGGTCCCTCCGCATCCTGTAAATATGTCATCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CCTGATGGAGGTCTCGAGGTATCCCAGCAACAATGCAAAATGCAGCCTTTCCCCCATAGGGCTTGGCACTaGCGGTCCCGGGTTTTACAG +
Preference number: 4 (lower is better)
Translates to: PDGGLEVSQQQCKMQPFPHRAWH*RSRVLQ
Trigger: CTGTAAAACCCGGGACCGGCAGTGCCAAGCCCTATG...GGGGAAAGGCTGCATTTTGCATTGTTGCTGGGATACCTCGAGACCTCCATCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp GACTATATTTTTCTATACCCCCGAATGCATGCACCCTGGCAGGGACAGGATGGTGCACGTGGCCTCCCCTaGAGTCCAACTCCTTGCCCT +
Preference number: 4 (lower is better)
Translates to: DYIFLYPRMHAPWQGQDGARGLP*SPTPCP
Trigger: AGGGCAAGGAGTTGGACTGCAGGGGAGGCCACGTGC...ACCATCCTGTCCCTGCCAGGGTGCATGCATTCGGGGGTATAGAAAAATATAGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CAGCAAGGACCAGTCAGGAGGGCAGACAGGAACATCTGTAAACTTACTACTCAGAGTGCAGAGCTCCTCTaGGACCCAGGGCCCCAAGAC +
Preference number: 4 (lower is better)
Translates to: QQGPVRRADRNICKLTTQSAELL*DPGPQD
Trigger: GTCTTGGGGCCCTGGGTCCCAGAGGAGCTCTGCACT...CTGAGTAGTAAGTTTACAGATGTTCCTGTCTGCCCTCCTGACTGGTCCTTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CCCATCTCCTCATACACATCACAGGCACTAACCCTGGGGCACAGGGCCACCCCTCTGCCCACGTTTCCATaGCAACCAGAACAATTCTTG +
Preference number: 4 (lower is better)
Translates to: PISSYTSQALTLGHRATPLPTFP*QPEQFL
Trigger: CAAGAATTGTTCTGGTTGCCATGGAAACGTGGGCAG...AGGGGTGGCCCTGTGCCCCAGGGTTAGTGCCTGTGATGTGTATGAGGAGATGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CCTGATGGAGGTCTCGAGGTATCCCAGCAACAATGCAAAATGCAGCCTTTCCCCCCAGGGTCACCGCCATaGCACCCATGTTGCCATACT +
Preference number: 4 (lower is better)
Translates to: PDGGLEVSQQQCKMQPFPPGSPP*HPCCHT
Trigger: AGTATGGCAACATGGGTGCCATGGCGGTGACCCTGG...GGGGAAAGGCTGCATTTTGCATTGTTGCTGGGATACCTCGAGACCTCCATCAGG
56% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CTGGCCACAGGAAGTCTTGTGTTCTTCACCAAGGACACGAGGACACACATGGTCCCAGGGTCACCGCCATaGCACCCATGTTGCCATACT +
Preference number: 4 (lower is better)
Translates to: LATGSLVFFTKDTRTHMVPGSPP*HPCCHT
Trigger: AGTATGGCAACATGGGTGCCATGGCGGTGACCCTGG...GACCATGTGTGTCCTCGTGTCCTTGGTGAAGAACACAAGACTTCCTGTGGCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp TGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCTTCACCAAGGACATCCTGCTTACTGCACTaGACCCAACCAGATCCCTTG +
Preference number: 4 (lower is better)
Translates to: WTPRVDWPQEVLCSSPRTSCLLH*TQPDPL
Trigger: CAAGGGATCTGGTTGGGTCCAGTGCAGTAAGCAGGA...TGTCCTTGGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
3UTR CAA 72 bp TTCACCAAGGACACGAGGACACACATGGTCATGCCCTaGTATGCAGAGGCCTTCACAGTGGTGCAGAGGCGT +
Preference number: 4 (lower is better)
Translates to: FTKDTRTHMVMP*YAEAFTVVQRR
Trigger: ACGCCTCTGCACCACTGTGAAGGCCTCTGCATACAAGGGCATGACCATGTGTGTCCTCGTGTCCTTGGTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp ATATTTTTCTATACCCCCGAATGCATGCACCCTGGCAGGGACAGGATGGTCAGTAGTCGAAGGCCGGGATaGCGAAACTCACCTGGGCCA +
Preference number: 4 (lower is better)
Translates to: IFFYTPECMHPGRDRMVSSRRPG*RNSPGP
Trigger: TGGCCCAGGTGAGTTTCGTCATCCCGGCCTTCGACT...ACTGACCATCCTGTCCCTGCCAGGGTGCATGCATTCGGGGGTATAGAAAAATAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp CAGCTCTCAGGCTGGGCGGCAGCAAGGACCAGTCAGGAGGGCAGACAGGAACATACAGCTGGTGGTCATTaGTTACAATCAACTCCACAT +
Preference number: 4 (lower is better)
Translates to: QLSGWAAARTSQEGRQEHTAGGH*LQSTPH
Trigger: ATGTGGAGTTGATTGTAATCAATGACCACCAGCTGT...ATGTTCCTGTCTGCCCTCCTGACTGGTCCTTGCTGCCGCCCAGCCTGAGAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp GGATGCAGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCCGATGTAAGTCAGGTTaGCATCAGAGAAGACCCCAT +
Preference number: 4 (lower is better)
Translates to: GCRKLDASGGLATGSLVFRCKSG*HQRRPH
Trigger: ATGGGGTCTTCTCTGATGGCAACCTGACTTACATCG...GAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCTGCATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CATGGTCATGCCCTTGTATGCAGAGGCCTTCACAGTGGTGCAGAGGCGTGGATTGATCTTGTCCCCATCTaGCCACGTTTCCATGGCAAC +
Preference number: 4 (lower is better)
Translates to: HGHALVCRGLHSGAEAWIDLVPI*PRFHGN
Trigger: GTTGCCATGGAAACGTGGGCAGATGGGGACAAGATC...AATCCACGCCTCTGCACCACTGTGAAGGCCTCTGCATACAAGGGCATGACCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp GTCTGTGATGATGGAGGCTACATTCACAGGGGGAGACGTGTGCAAGGCCAAAGCAAATGTCTGGACACTTaGAGTCCCCTGCTGAGCTCC +
Preference number: 4 (lower is better)
Translates to: VCDDGGYIHRGRRVQGQSKCLDT*SPLLSS
Trigger: GGAGCTCAGCAGGGGACTGCAAGTGTCCAGACATTT...GCTTTGGCCTTGCACACGTCTCCCCCTGTGAATGTAGCCTCCATCATCACAGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CAGCAAGGACCAGTCAGGAGGGCAGACAGGAACATCTGTAAACTTACTACTCAGCCTGGTGTCCAACTGTaGCTTTCGGACCTCTCCCCC +
Preference number: 4 (lower is better)
Translates to: QQGPVRRADRNICKLTTQPGVQL*LSDLSP
Trigger: GGGGGAGAGGTCCGAAAGCCACAGTTGGACACCAGG...CTGAGTAGTAAGTTTACAGATGTTCCTGTCTGCCCTCCTGACTGGTCCTTGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp TCACCTATAACCATCCACGAGGCCTGCCCTTTCCCCATCTCCTCATACACATCAATGACGAAACTCACCTaGGCCAGGTGCACAGGCGTC +
Preference number: 4 (lower is better)
Translates to: SPITIHEACPFPISSYTSMTKLT*ARCTGV
Trigger: GACGCCTGTGCACCTGGCCCAGGTGAGTTTCGTCAT...TGATGTGTATGAGGAGATGGGGAAAGGGCAGGCCTCGTGGATGGTTATAGGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp AGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCTTCACCTTTTCCTTCTTAGCTTaGGCCAGTTGGGGAGAGCAG +
Preference number: 4 (lower is better)
Translates to: RKLDASGGLATGSLVFFTFSFLA*ASWGEQ
Trigger: CTGCTCTCCCCAACTGGCCCAAGCTAAGAAGGAAAA...GGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp GTGGCAGTCTGTGATGATGGAGGCTACATTCACAGGGGGAGACGTGTGCAAGGCTCAACTCCACATACTTaGTCTCGCTGTGCACTGTGG +
Preference number: 4 (lower is better)
Translates to: VAVCDDGGYIHRGRRVQGSTPHT*SRCALW
Trigger: CCACAGTGCACAGCGAGACCAAGTATGTGGAGTTGA...GCCTTGCACACGTCTCCCCCTGTGAATGTAGCCTCCATCATCACAGACTGCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAGAAAATGTAGATCAGCCCCTTCCCGTGAGGACCCAGTGTCCTCCATaGTGCAGCCCAGCCAAATGT +
Preference number: 4 (lower is better)
Translates to: ERERERERENVDQPLPVRTQCPP*CSPAKC
Trigger: ACATTTGGCTGGGCTGCATCATGGAGGACACTGGGT...CCTCACGGGAAGGGGCTGATCTACATTTTCTCTCTCTCTCTCTCTCTCTCTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp AGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGTAGATCAGCCCCTTCCCGTGAGGCTGGCAGGCAGCGGTaGTCTAGGCACAACATGTTG +
Preference number: 4 (lower is better)
Translates to: RERERERERKCRSAPSREAGRQR*SRHNML
Trigger: CAACATGTTGTGCCTAGATCACCGCTGCCTGCCAGC...CTCACGGGAAGGGGCTGATCTACATTTTCTCTCTCTCTCTCTCTCTCTCTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp GGTATCCCAGCAACAATGCAAAATGCAGCCTTTCCCCTGACCTCAGCTAGTGGGAAATGTCTGGACACTTaGAGTCCCCTGCTGAGCTCC +
Preference number: 4 (lower is better)
Translates to: GIPATMQNAAFPLTSASGKCLDT*SPLLSS
Trigger: GGAGCTCAGCAGGGGACTGCAAGTGTCCAGACATTT...CCCACTAGCTGAGGTCAGGGGAAAGGCTGCATTTTGCATTGTTGCTGGGATACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CTGGCCACAGGAAGTCTTGTGTTCTTCACCAAGGACACGAGGACACACATGGTCGGTTGTATTCGTCGATaGTGCAGCGCGAGAACTTGC +
Preference number: 4 (lower is better)
Translates to: LATGSLVFFTKDTRTHMVGCIRR*CSARTC
Trigger: GCAAGTTCTCGCGCTGCAGCATCGACGAATACAACC...GACCATGTGTGTCCTCGTGTCCTTGGTGAAGAACACAAGACTTCCTGTGGCCAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp ACGAGGACACACATGGTCATGCCCTTGTATGCAGAGGCCTTCACAGTGGTGCAGGAATACTGCAGTCTTTaGCTGTCCAGTCTGGCTGAC +
Preference number: 4 (lower is better)
Translates to: TRTHMVMPLYAEAFTVVQEYCSL*LSSLAD
Trigger: GTCAGCCAGACTGGACAGGCAAAGACTGCAGTATTC...CTGCACCACTGTGAAGGCCTCTGCATACAAGGGCATGACCATGTGTGTCCTCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CAGCAAGGACCAGTCAGGAGGGCAGACAGGAACATCTGTAAACTTACTACTCAGACCCCATGCAGCCCCTaGCATGTAGAGAGTGCAGCA +
Preference number: 4 (lower is better)
Translates to: QQGPVRRADRNICKLTTQTPCSP*HVESAA
Trigger: TGCTGCACTCTCTACATGCCAGGGGCTGCATGGGGT...CTGAGTAGTAAGTTTACAGATGTTCCTGTCTGCCCTCCTGACTGGTCCTTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp GACTATATTTTTCTATACCCCCGAATGCATGCACCCTGGCAGGGACAGGATGGTTTGGGGAGAGCAGACTaGGCAGGGACAGCAAACAGG +
Preference number: 4 (lower is better)
Translates to: DYIFLYPRMHAPWQGQDGLGRAD*AGTANR
Trigger: CCTGTTTGCTGTCCCTGCCCAGTCTGCTCTCCCCAA...ACCATCCTGTCCCTGCCAGGGTGCATGCATTCGGGGGTATAGAAAAATATAGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CTGGCCACAGGAAGTCTTGTGTTCTTCACCAAGGACACGAGGACACACATGGTCTCCTGCTTACTGCACTaGACCCAACCAGATCCCTTG +
Preference number: 4 (lower is better)
Translates to: LATGSLVFFTKDTRTHMVSCLLH*TQPDPL
Trigger: CAAGGGATCTGGTTGGGTCCAGTGCAGTAAGCAGGA...GACCATGTGTGTCCTCGTGTCCTTGGTGAAGAACACAAGACTTCCTGTGGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CTGGCAGGGACAGGATGGTCAGTTTGGAATCGAAGACAGTCTGGGACAGAGTCCTTTGCCTGTCCAGTCTaGCTGACAGATACACTTCCC +
Preference number: 4 (lower is better)
Translates to: LAGTGWSVWNRRQSGTESFACPV*LTDTLP
Trigger: GGGAAGTGTATCTGTCAGCCAGACTGGACAGGCAAA...GGACTCTGTCCCAGACTGTCTTCGATTCCAAACTGACCATCCTGTCCCTGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp CAGCAAGGACCAGTCAGGAGGGCAGACAGGAACATCTGTAAACTTACTACTCAGGAGCTCCAGAGATGTTaGCGCACAGAAGGAAGCCAC +
Preference number: 4 (lower is better)
Translates to: QQGPVRRADRNICKLTTQELQRC*RTEGSH
Trigger: GTGGCTTCCTTCTGTGCGTCAACATCTCTGGAGCTC...CTGAGTAGTAAGTTTACAGATGTTCCTGTCTGCCCTCCTGACTGGTCCTTGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CTGGCCACAGGAAGTCTTGTGTTCTTCACCAAGGACACGAGGACACACATGGTCGCTTATTCCACATCATaGCCAAGTTCTGCCCTAGCG +
Preference number: 4 (lower is better)
Translates to: LATGSLVFFTKDTRTHMVAYSTS*PSSALA
Trigger: CGCTAGGGCAGAACTTGGGCATGATGTGGAATAAGC...GACCATGTGTGTCCTCGTGTCCTTGGTGAAGAACACAAGACTTCCTGTGGCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CCTGATGGAGGTCTCGAGGTATCCCAGCAACAATGCAAAATGCAGCCTTTCCCCGCTTATTCCACATCATaGCCAAGTTCTGCCCTAGCG +
Preference number: 4 (lower is better)
Translates to: PDGGLEVSQQQCKMQPFPAYSTS*PSSALA
Trigger: CGCTAGGGCAGAACTTGGGCATGATGTGGAATAAGC...GGGGAAAGGCTGCATTTTGCATTGTTGCTGGGATACCTCGAGACCTCCATCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp AACTTACTACTCAGCCCTAGACTACAGGTGAATAAAACTTGTGACGGGGGTGGGCATAGGGCTTGGCACTaGCGGTCCCGGGTTTTACAG +
Preference number: 4 (lower is better)
Translates to: NLLLSPRLQVNKTCDGGGHRAWH*RSRVLQ
Trigger: CTGTAAAACCCGGGACCGGCAGTGCCAAGCCCTATG...CCCACCCCCGTCACAAGTTTTATTCACCTGTAGTCTAGGGCTGAGTAGTAAGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp AACTTACTACTCAGCCCTAGACTACAGGTGAATAAAACTTGTGACGGGGGTGGGACCCCATGCAGCCCCTaGCATGTAGAGAGTGCAGCA +
Preference number: 4 (lower is better)
Translates to: NLLLSPRLQVNKTCDGGGTPCSP*HVESAA
Trigger: TGCTGCACTCTCTACATGCCAGGGGCTGCATGGGGT...CCCACCCCCGTCACAAGTTTTATTCACCTGTAGTCTAGGGCTGAGTAGTAAGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp CAGACAGGAACATCTGTAAACTTACTACTCAGCCCTAGACTACAGGTGAATAAAGCTCCCCACATGGGCTaGGCTCCTCCAGTGCAGAGC +
Preference number: 4 (lower is better)
Translates to: QTGTSVNLLLSPRLQVNKAPHMG*APPVQS
Trigger: GCTCTGCACTGGAGGAGCTCAGCCCATGTGGGGAGC...TTTATTCACCTGTAGTCTAGGGCTGAGTAGTAAGTTTACAGATGTTCCTGTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp ATATTTTTCTATACCCCCGAATGCATGCACCCTGGCAGGGACAGGATGGTCAGTCCATGGCACCCATGTTaGCATACTCGTTCACACCTC +
Preference number: 4 (lower is better)
Translates to: IFFYTPECMHPGRDRMVSPWHPC*HTRSHL
Trigger: GAGGTGTGAACGAGTATGGCAACATGGGTGCCATGG...ACTGACCATCCTGTCCCTGCCAGGGTGCATGCATTCGGGGGTATAGAAAAATAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CAGCAAGGACCAGTCAGGAGGGCAGACAGGAACATCTGTAAACTTACTACTCAGGCCGGTGCAGGTCTCTaGAATGTCACACTCATTCAC +
Preference number: 4 (lower is better)
Translates to: QQGPVRRADRNICKLTTQAGAGL*NVTLIH
Trigger: GTGAATGAGTGTGACATTGCAGAGACCTGCACCGGC...CTGAGTAGTAAGTTTACAGATGTTCCTGTCTGCCCTCCTGACTGGTCCTTGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp AACTTACTACTCAGCCCTAGACTACAGGTGAATAAAACTTGTGACGGGGGTGGGTACACTTCCCCTCGTTaGTGCAAACCCCATGATGGG +
Preference number: 4 (lower is better)
Translates to: NLLLSPRLQVNKTCDGGGYTSPR*CKPHDG
Trigger: CCCATCATGGGGTTTGCAGCAACGAGGGGAAGTGTA...CCCACCCCCGTCACAAGTTTTATTCACCTGTAGTCTAGGGCTGAGTAGTAAGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp TCTGTAAACTTACTACTCAGCCCTAGACTACAGGTGAATAAAACTTGTGACGGGTTGCAAAGTTGCTGGTaGGGACCACTGACTGCCGCA +
Preference number: 4 (lower is better)
Translates to: SVNLLLSPRLQVNKTCDGLQSCW*GPLTAA
Trigger: TGCGGCAGTCAGTGGTCCTCACCAGCAACTTTGCAA...CCCGTCACAAGTTTTATTCACCTGTAGTCTAGGGCTGAGTAGTAAGTTTACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp AACTTACTACTCAGCCCTAGACTACAGGTGAATAAAACTTGTGACGGGGGTGGGCGATGTAAGTCAGGTTaGCATCAGAGAAGACCCCAT +
Preference number: 4 (lower is better)
Translates to: NLLLSPRLQVNKTCDGGGRCKSG*HQRRPH
Trigger: ATGGGGTCTTCTCTGATGGCAACCTGACTTACATCG...CCCACCCCCGTCACAAGTTTTATTCACCTGTAGTCTAGGGCTGAGTAGTAAGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp TCTGTAAACTTACTACTCAGCCCTAGACTACAGGTGAATAAAACTTGTGACGGGCCCAACCAGATCCCTTaGGTCCACAGTTTCCACGCT +
Preference number: 4 (lower is better)
Translates to: SVNLLLSPRLQVNKTCDGPNQIP*VHSFHA
Trigger: AGCGTGGAAACTGTGGACGCAAGGGATCTGGTTGGG...CCCGTCACAAGTTTTATTCACCTGTAGTCTAGGGCTGAGTAGTAAGTTTACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR TCA 90 bp TCACCTATAACCATCCACGAGGCCTGCCCTTTCCCCATCTCCTCATACACATCAGAACAATTCTTGTGTTaGGCTGTTCCTTGTATATCA +
Preference number: 4 (lower is better)
Translates to: SPITIHEACPFPISSYTSEQFLC*AVPCIS
Trigger: TGATATACAAGGAACAGCTCAACACAAGAATTGTTC...TGATGTGTATGAGGAGATGGGGAAAGGGCAGGCCTCGTGGATGGTTATAGGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CAGACAGGAACATCTGTAAACTTACTACTCAGCCCTAGACTACAGGTGAATAAATTTGCCTGTCCAGTCTaGCTGACAGATACACTTCCC +
Preference number: 4 (lower is better)
Translates to: QTGTSVNLLLSPRLQVNKFACPV*LTDTLP
Trigger: GGGAAGTGTATCTGTCAGCCAGACTGGACAGGCAAA...TTTATTCACCTGTAGTCTAGGGCTGAGTAGTAAGTTTACAGATGTTCCTGTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR GCA 90 bp CAGACAGGAACATCTGTAAACTTACTACTCAGCCCTAGACTACAGGTGAATAAAGTGGGTTGTGAATACTaGAGTCTTTGCCTGTCCAGT +
Preference number: 4 (lower is better)
Translates to: QTGTSVNLLLSPRLQVNKVGCEY*SLCLSS
Trigger: ACTGGACAGGCAAAGACTGCAGTATTCACAACCCAC...TTTATTCACCTGTAGTCTAGGGCTGAGTAGTAAGTTTACAGATGTTCCTGTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CCA 90 bp CAGACAGGAACATCTGTAAACTTACTACTCAGCCCTAGACTACAGGTGAATAAACTGCCCACGTTTCCATaGCAACCAGAACAATTCTTG +
Preference number: 4 (lower is better)
Translates to: QTGTSVNLLLSPRLQVNKLPTFP*QPEQFL
Trigger: CAAGAATTGTTCTGGTTGCCATGGAAACGTGGGCAG...TTTATTCACCTGTAGTCTAGGGCTGAGTAGTAAGTTTACAGATGTTCCTGTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 90 bp GGGCCAGGTGCACAGGCGTCCCCCTGGGCGGATCCTGGCGGACCCTaGTGTCCAACTGTGGCTTTCGGACCTCTCCCCCGGAGCTCTGCC +
Preference number: 5 (lower is better)
Translates to: GPGAQASPWADPGGP*CPTVAFGPLPRSSA
Trigger: GGCAGAGCTCCGGGGGAGAGGTCCGAAAGCCACAGTTGGACACCAGGGTCCGCCAGGATCCGCCCAGGGGGACGCCTGTGCACCTGGCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 90 bp AGGCGTCCCCCTGGGCGGATCCTGGCGGACCCTGGTGTCCAACTGTaGCTTTCGGACCTCTCCCCCGGAGCTCTGCCTTACCAGCCGGCT +
Preference number: 5 (lower is better)
Translates to: RRPPGRILADPGVQL*LSDLSPGALPYQPA
Trigger: AGCCGGCTGGTAAGGCAGAGCTCCGGGGGAGAGGTCCGAAAGCCACAGTTGGACACCAGGGTCCGCCAGGATCCGCCCAGGGGGACGCCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS TCA 90 bp TGTGACCTCAGAGCCCTCTGGACTCTCTGGGCTCCCCACATGGGCTaGGCTCCTCCAGTGCAGAGCTCCTCTGGGACCCAGGGCCCCAAG +
Preference number: 5 (lower is better)
Translates to: CDLRALWTLWAPHMG*APPVQSSSGTQGPK
Trigger: CTTGGGGCCCTGGGTCCCAGAGGAGCTCTGCACTGGAGGAGCTCAGCCCATGTGGGGAGCCCAGAGAGTCCAGAGGGCTCTGAGGTCACA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS TCA 90 bp GGCACCCATGTTGCCATACTCGTTCACACCTCCACCCCGGGACAGTaGACAGATGCCTCCCACGTAGGCCGCCCCGCTGCTGGTGCTCTG +
Preference number: 5 (lower is better)
Translates to: GTHVAILVHTSTPGQ*TDASHVGRPAAGAL
Trigger: CAGAGCACCAGCAGCGGGGCGGCCTACGTGGGAGGCATCTGTTCACTGTCCCGGGGTGGAGGTGTGAACGAGTATGGCAACATGGGTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS TCA 90 bp CCAGGGCAGGTGCTGAAGTTGAAGGCAGAGGCTGGCAGGCAGCGGTaGTCTAGGCACAACATGTTGGGCCCACAGGCCGTGCCGTCCTCC +
Preference number: 5 (lower is better)
Translates to: PGQVLKLKAEAGRQR*SRHNMLGPQAVPSS
Trigger: GGAGGACGGCACGGCCTGTGGGCCCAACATGTTGTGCCTAGATCACCGCTGCCTGCCAGCCTCTGCCTTCAACTTCAGCACCTGCCCTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 90 bp CACCCCGGGACAGTGAACAGATGCCTCCCACGTAGGCCGCCCCGCTaGTGGTGCTCTGGAAGGTTCTACCCGAGAAGAGGTGGGTGGCAT +
Preference number: 5 (lower is better)
Translates to: HPGTVNRCLPRRPPR*WCSGRFYPRRGGWH
Trigger: ATGCCACCCACCTCTTCTCGGGTAGAACCTTCCAGAGCACCAGCAGCGGGGCGGCCTACGTGGGAGGCATCTGTTCACTGTCCCGGGGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 90 bp TCCAGAGTGAAGTTTGAGTCGAAGGCCGGGATGACGAAACTCACCTaGGCCAGGTGCACAGGCGTCCCCCTGGGCGGATCCTGGCGGACC +
Preference number: 5 (lower is better)
Translates to: SRVKFESKAGMTKLT*ARCTGVPLGGSWRT
Trigger: GGTCCGCCAGGATCCGCCCAGGGGGACGCCTGTGCACCTGGCCCAGGTGAGTTTCGTCATCCCGGCCTTCGACTCAAACTTCACTCTGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 90 bp CCCGGGACAGTGAACAGATGCCTCCCACGTAGGCCGCCCCGCTGCTaGTGCTCTGGAAGGTTCTACCCGAGAAGAGGTGGGTGGCATCAC +
Preference number: 5 (lower is better)
Translates to: PGTVNRCLPRRPPRC*CSGRFYPRRGGWHH
Trigger: GTGATGCCACCCACCTCTTCTCGGGTAGAACCTTCCAGAGCACCAGCAGCGGGGCGGCCTACGTGGGAGGCATCTGTTCACTGTCCCGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp GGGGAGACGTGTGCAAGGCCAAAGCCGCATGAGGTGGGATGGGGAACTGGGCAGTCTAGGCACAACATGTaGGGCCCACAGGCCGTGCCG +
Preference number: 5 (lower is better)
Translates to: GETCARPKPHEVGWGTGQSRHNM*GPQAVP
Trigger: CGGCACGGCCTGTGGGCCCAACATGTTGTGCCTAGA...CTGCCCAGTTCCCCATCCCACCTCATGCGGCTTTGGCCTTGCACACGTCTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp GGGTGGGGCAAGGGGATGCAGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGCAAATGTCTGGACACTaGCAGTCCCCTGCTGAGCTC +
Preference number: 5 (lower is better)
Translates to: GWGKGMQEVGRLGWTGHRQMSGH*QSPAEL
Trigger: GAGCTCAGCAGGGGACTGCAAGTGTCCAGACATTTG...CCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCTGCATCCCCTTGCCCCACCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp ACTGGGCAGGAAGCGTCCTCCTCCCGGCCCCTCTACCCAGGTGGTCTGAAAGGCGGAGGGTCCAGAAGCTaGAGGGGCTTGTTGAACAGG +
Preference number: 5 (lower is better)
Translates to: TGQEASSSRPLYPGGLKGGGSRS*RGLLNR
Trigger: CCTGTTCAACAAGCCCCTCAAGCTTCTGGACCCTCC...GCCTTTCAGACCACCTGGGTAGAGGGGCCGGGAGGAGGACGCTTCCTGCCCAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 90 bp TGTTGCCATACTCGTTCACACCTCCACCCCGGGACAGTGAACAGATaGCTCCCACGTAGGCCGCCCCGCTGCTGGTGCTCTGGAAGGTTC +
Preference number: 5 (lower is better)
Translates to: CCHTRSHLHPGTVNR*LPRRPPRCWCSGRF
Trigger: GAACCTTCCAGAGCACCAGCAGCGGGGCGGCCTACGTGGGAGGCATCTGTTCACTGTCCCGGGGTGGAGGTGTGAACGAGTATGGCAACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 90 bp GCAGGCAGCGGTGATCTAGGCACAACATGTTGGGCCCACAGGCCGTaGCGTCCTCCACATAGCTCAGGTCCGAGCCATCAGCTAGCTGCA +
Preference number: 5 (lower is better)
Translates to: AGSGDLGTTCWAHRP*RPPHSSGPSHQLAA
Trigger: TGCAGCTAGCTGATGGCTCGGACCTGAGCTATGTGGAGGACGGCACGGCCTGTGGGCCCAACATGTTGTGCCTAGATCACCGCTGCCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 90 bp TCATGCCCAAGTTCTGCCCTAGCGTCTGGGCCAGGGTCACCGCCATaGCACCCATGTTGCCATACTCGTTCACACCTCCACCCCGGGACA +
Preference number: 5 (lower is better)
Translates to: SCPSSALASGPGSPP*HPCCHTRSHLHPGT
Trigger: TGTCCCGGGGTGGAGGTGTGAACGAGTATGGCAACATGGGTGCCATGGCGGTGACCCTGGCCCAGACGCTAGGGCAGAACTTGGGCATGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp CCCCAGCTGGGTTCCCTGACAGGATTCGTTTGGGCCTCCCAGGGAGGGATGTGGAGAAGCTTGAGGGGCTaGTTGAACAGGCAGCTCCCG +
Preference number: 5 (lower is better)
Translates to: PQLGSLTGFVWASQGGMWRSLRG*LNRQLP
Trigger: CGGGAGCTGCCTGTTCAACAAGCCCCTCAAGCTTCT...CCACATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAGGGAACCCAGCTGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp CCCCCAAAGCTGCCAGTGGGCCGTAGGCTCCAAGGTGCCGGCCACTGGGTTGGTGTCAAGGTGCATTTTTaGCAGCAGTTGCCCCCTGCT +
Preference number: 5 (lower is better)
Translates to: PPKLPVGRRLQGAGHWVGVKVHF*QQLPPA
Trigger: AGCAGGGGGCAACTGCTGCAAAAAATGCACCTTGAC...ACCAACCCAGTGGCCGGCACCTTGGAGCCTACGGCCCACTGGCAGCTTTGGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp CAGTGGCACCTGGGGCTCAGCACTGAGGACCCCACTGTGGCCAACACCATCTGGACCCAACCAGATCCCTaGCGTCCACAGTTTCCACGC +
Preference number: 5 (lower is better)
Translates to: QWHLGLSTEDPTVANTIWTQPDP*RPQFPR
Trigger: GCGTGGAAACTGTGGACGCAAGGGATCTGGTTGGGT...CCAGATGGTGTTGGCCACAGTGGGGTCCTCAGTGCTGAGCCCCAGGTGCCACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 90 bp TCCCCTGCTGAGCTCCGGTGCTTATTCCACATCATGCCCAAGTTCTaGCCTAGCGTCTGGGCCAGGGTCACCGCCATGGCACCCATGTTG +
Preference number: 5 (lower is better)
Translates to: SPAELRCLFHIMPKF*PSVWARVTAMAPML
Trigger: CAACATGGGTGCCATGGCGGTGACCCTGGCCCAGACGCTAGGGCAGAACTTGGGCATGATGTGGAATAAGCACCGGAGCTCAGCAGGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp CCCCAGCTGGGTTCCCTGACAGGATTCGTTTGGGCCTCCCAGGGAGGGATGTGGCAAATGTCTGGACACTaGCAGTCCCCTGCTGAGCTC +
Preference number: 5 (lower is better)
Translates to: PQLGSLTGFVWASQGGMWQMSGH*QSPAEL
Trigger: GAGCTCAGCAGGGGACTGCAAGTGTCCAGACATTTG...CCACATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAGGGAACCCAGCTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp CTGACAGGATTCGTTTGGGCCTCCCAGGGAGGGATGTGGGAGGTCTCAAGGCCTAGCTTGAGGGGCTTGTaGAACAGGCAGCTCCCGCCT +
Preference number: 5 (lower is better)
Translates to: LTGFVWASQGGMWEVSRPSLRGL*NRQLPP
Trigger: AGGCGGGAGCTGCCTGTTCAACAAGCCCCTCAAGCT...AGGCCTTGAGACCTCCCACATCCCTCCCTGGGAGGCCCAAACGAATCCTGTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp GCAAGGGGATGCAGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTAGCTTGAGGGGCTTGTaGAACAGGCAGCTCCCGCCT +
Preference number: 5 (lower is better)
Translates to: ARGCRKLDASGGLATGSLSLRGL*NRQLPP
Trigger: AGGCGGGAGCTGCCTGTTCAACAAGCCCCTCAAGCT...AAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCTGCATCCCCTTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp CAGCTCTCAGGCTGGGCGGCAGCAAGGACCAGTCAGGAGGGCAGACAGGAACATGGAGGGTCCAGAAGCTaGAGGGGCTTGTTGAACAGG +
Preference number: 5 (lower is better)
Translates to: QLSGWAAARTSQEGRQEHGGSRS*RGLLNR
Trigger: CCTGTTCAACAAGCCCCTCAAGCTTCTGGACCCTCC...ATGTTCCTGTCTGCCCTCCTGACTGGTCCTTGCTGCCGCCCAGCCTGAGAGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp GAACAGCCAGGCCACATCAGGGGGCACCTGAACCCTGAGACAGCCCCAGAATCAAGAAGCTTGAGGGGCTaGTTGAACAGGCAGCTCCCG +
Preference number: 5 (lower is better)
Translates to: EQPGHIRGHLNPETAPESRSLRG*LNRQLP
Trigger: CGGGAGCTGCCTGTTCAACAAGCCCCTCAAGCTTCT...TGATTCTGGGGCTGTCTCAGGGTTCAGGTGCCCCCTGATGTGGCCTGGCTGTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp GGGGAGACGTGTGCAAGGCCAAAGCCGCATGAGGTGGGATGGGGAACTGGGCAGGTCAAGGTGCATTTTTaGCAGCAGTTGCCCCCTGCT +
Preference number: 5 (lower is better)
Translates to: GETCARPKPHEVGWGTGQVKVHF*QQLPPA
Trigger: AGCAGGGGGCAACTGCTGCAAAAAATGCACCTTGAC...CTGCCCAGTTCCCCATCCCACCTCATGCGGCTTTGGCCTTGCACACGTCTCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 90 bp CTCCGGTGCTTATTCCACATCATGCCCAAGTTCTGCCCTAGCGTCTaGGCCAGGGTCACCGCCATGGCACCCATGTTGCCATACTCGTTC +
Preference number: 5 (lower is better)
Translates to: LRCLFHIMPKFCPSV*ARVTAMAPMLPYSF
Trigger: GAACGAGTATGGCAACATGGGTGCCATGGCGGTGACCCTGGCCCAGACGCTAGGGCAGAACTTGGGCATGATGTGGAATAAGCACCGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 90 bp AGGGGCTTGTTGAACAGGCAGCTCCCGCCTCCCTCCTGCAGAAACTaGTTGTATTCGTCGATGCTGCAGCGCGAGAACTTGCGGGGCAAA +
Preference number: 5 (lower is better)
Translates to: RGLLNRQLPPPSCRN*LYSSMLQRENLRGK
Trigger: TTTGCCCCGCAAGTTCTCGCGCTGCAGCATCGACGAATACAACCAGTTTCTGCAGGAGGGAGGCGGGAGCTGCCTGTTCAACAAGCCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 90 bp CGCTGGGACCTTTGTATCTCTCAGTCTCCCCAGTGGGAGGGGACGTaGGCAGTGGGTTGTGAATACTGCAGTCTTTGCCTGTCCAGTCTG +
Preference number: 5 (lower is better)
Translates to: RWDLCISQSPQWEGT*AVGCEYCSLCLSSL
Trigger: CAGACTGGACAGGCAAAGACTGCAGTATTCACAACCCACTGCCCACGTCCCCTCCCACTGGGGAGACTGAGAGATACAAAGGTCCCAGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 90 bp AGAAGCTTGAGGGGCTTGTTGAACAGGCAGCTCCCGCCTCCCTCCTaGAGAAACTGGTTGTATTCGTCGATGCTGCAGCGCGAGAACTTG +
Preference number: 5 (lower is better)
Translates to: RSLRGLLNRQLPPPS*RNWLYSSMLQRENL
Trigger: CAAGTTCTCGCGCTGCAGCATCGACGAATACAACCAGTTTCTGCAGGAGGGAGGCGGGAGCTGCCTGTTCAACAAGCCCCTCAAGCTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp TATACCCCCGAATGCATGCACCCTGGCAGGGACAGGATGGTCAGTTTGGAATCGACCCAACCAGATCCCTaGCGTCCACAGTTTCCACGC +
Preference number: 5 (lower is better)
Translates to: YTPECMHPGRDRMVSLESTQPDP*RPQFPR
Trigger: GCGTGGAAACTGTGGACGCAAGGGATCTGGTTGGGT...CGATTCCAAACTGACCATCCTGTCCCTGCCAGGGTGCATGCATTCGGGGGTATA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp GTGGCAGTCTGTGATGATGGAGGCTACATTCACAGGGGGAGACGTGTGCAAGGCGGAGCTCCAGAGATGTaGACGCACAGAAGGAAGCCA +
Preference number: 5 (lower is better)
Translates to: VAVCDDGGYIHRGRRVQGGAPEM*THRRKP
Trigger: TGGCTTCCTTCTGTGCGTCAACATCTCTGGAGCTCC...GCCTTGCACACGTCTCCCCCTGTGAATGTAGCCTCCATCATCACAGACTGCCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 90 bp CTTTGCCTGTCCAGTCTGGCTGACAGATACACTTCCCCTCGTTGCTaGAAACCCCATGATGGGAGCAGATCCTTCGCTCTCCACTTCCAG +
Preference number: 5 (lower is better)
Translates to: LCLSSLADRYTSPRC*KPHDGSRSFALHFQ
Trigger: CTGGAAGTGGAGAGCGAAGGATCTGCTCCCATCATGGGGTTTGCAGCAACGAGGGGAAGTGTATCTGTCAGCCAGACTGGACAGGCAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 90 bp ACCTTTGTATCTCTCAGTCTCCCCAGTGGGAGGGGACGTGGGCAGTaGGTTGTGAATACTGCAGTCTTTGCCTGTCCAGTCTGGCTGACA +
Preference number: 5 (lower is better)
Translates to: TFVSLSLPSGRGRGQ*VVNTAVFACPVWLT
Trigger: TGTCAGCCAGACTGGACAGGCAAAGACTGCAGTATTCACAACCCACTGCCCACGTCCCCTCCCACTGGGGAGACTGAGAGATACAAAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp CCCATCTCCTCATACACATCACAGGCACTAACCCTGGGGCACAGGGCCACCCCTACAGATTTTGCAAAGTaGCTGGTGAGGACCACTGAC +
Preference number: 5 (lower is better)
Translates to: PISSYTSQALTLGHRATPTDFAK*LVRTTD
Trigger: GTCAGTGGTCCTCACCAGCAACTTTGCAAAATCTGT...AGGGGTGGCCCTGTGCCCCAGGGTTAGTGCCTGTGATGTGTATGAGGAGATGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp CTGCTCTATCTTGCCCCGCCAGCTCTTAGGGCATGGAGCCAGAGCGTGTGTGTCGTGTTGAGCTGTTCCTaGTATATCACATCTGCCAGG +
Preference number: 5 (lower is better)
Translates to: LLYLAPPALRAWSQSVCVVLSCS*YITSAR
Trigger: CCTGGCAGATGTGATATACAAGGAACAGCTCAACAC...GACACACACGCTCTGGCTCCATGCCCTAAGAGCTGGCGGGGCAAGATAGAGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp TGCACCCTGGCAGGGACAGGATGGTCAGTTTGGAATCGAAGACAGTCTGGGACAGGAGCTCCAGAGATGTaGACGCACAGAAGGAAGCCA +
Preference number: 5 (lower is better)
Translates to: CTLAGTGWSVWNRRQSGTGAPEM*THRRKP
Trigger: TGGCTTCCTTCTGTGCGTCAACATCTCTGGAGCTCC...TGTCCCAGACTGTCTTCGATTCCAAACTGACCATCCTGTCCCTGCCAGGGTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp GACTATATTTTTCTATACCCCCGAATGCATGCACCCTGGCAGGGACAGGATGGTTCTAGGCACAACATGTaGGGCCCACAGGCCGTGCCG +
Preference number: 5 (lower is better)
Translates to: DYIFLYPRMHAPWQGQDGSRHNM*GPQAVP
Trigger: CGGCACGGCCTGTGGGCCCAACATGTTGTGCCTAGA...ACCATCCTGTCCCTGCCAGGGTGCATGCATTCGGGGGTATAGAAAAATATAGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp GTGGCAGTCTGTGATGATGGAGGCTACATTCACAGGGGGAGACGTGTGCAAGGCGAGCCAATGATGATGTaGGTACCGCTGGGACCTTTG +
Preference number: 5 (lower is better)
Translates to: VAVCDDGGYIHRGRRVQGEPMMM*VPLGPL
Trigger: CAAAGGTCCCAGCGGTACCAACATCATCATTGGCTC...GCCTTGCACACGTCTCCCCCTGTGAATGTAGCCTCCATCATCACAGACTGCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 90 bp AGTCTTTGCCTGTCCAGTCTGGCTGACAGATACACTTCCCCTCGTTaGTGCAAACCCCATGATGGGAGCAGATCCTTCGCTCTCCACTTC +
Preference number: 5 (lower is better)
Translates to: SLCLSSLADRYTSPR*CKPHDGSRSFALHF
Trigger: GAAGTGGAGAGCGAAGGATCTGCTCCCATCATGGGGTTTGCAGCAACGAGGGGAAGTGTATCTGTCAGCCAGACTGGACAGGCAAAGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 90 bp CGTGGGCAGTGGGTTGTGAATACTGCAGTCTTTGCCTGTCCAGTCTaGCTGACAGATACACTTCCCCTCGTTGCTGCAAACCCCATGATG +
Preference number: 5 (lower is better)
Translates to: RGQWVVNTAVFACPV*LTDTLPLVAANPMM
Trigger: CATCATGGGGTTTGCAGCAACGAGGGGAAGTGTATCTGTCAGCCAGACTGGACAGGCAAAGACTGCAGTATTCACAACCCACTGCCCACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp AGGAAGTTGGACGCCTCGGGTGGACTGGCCACAGGAAGTCTTGTGTTCTTCACCTCCTGCAGAAACTGGTaGTATTCGTCGATGCTGCAG +
Preference number: 5 (lower is better)
Translates to: RKLDASGGLATGSLVFFTSCRNW*YSSMLQ
Trigger: CTGCAGCATCGACGAATACAACCAGTTTCTGCAGGA...GGTGAAGAACACAAGACTTCCTGTGGCCAGTCCACCCGAGGCGTCCAACTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp CCCTGGCAGGGACAGGATGGTCAGTTTGGAATCGAAGACAGTCTGGGACAGAGTATCAACTCCACATACTaGGTCTCGCTGTGCACTGTG +
Preference number: 5 (lower is better)
Translates to: PWQGQDGQFGIEDSLGQSINSTY*VSLCTV
Trigger: CACAGTGCACAGCGAGACCAAGTATGTGGAGTTGAT...ACTCTGTCCCAGACTGTCTTCGATTCCAAACTGACCATCCTGTCCCTGCCAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp TATACCCCCGAATGCATGCACCCTGGCAGGGACAGGATGGTCAGTTTGGAATCGTCCTGCAGAAACTGGTaGTATTCGTCGATGCTGCAG +
Preference number: 5 (lower is better)
Translates to: YTPECMHPGRDRMVSLESSCRNW*YSSMLQ
Trigger: CTGCAGCATCGACGAATACAACCAGTTTCTGCAGGA...CGATTCCAAACTGACCATCCTGTCCCTGCCAGGGTGCATGCATTCGGGGGTATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp GACTATATTTTTCTATACCCCCGAATGCATGCACCCTGGCAGGGACAGGATGGTGAGCCAATGATGATGTaGGTACCGCTGGGACCTTTG +
Preference number: 5 (lower is better)
Translates to: DYIFLYPRMHAPWQGQDGEPMMM*VPLGPL
Trigger: CAAAGGTCCCAGCGGTACCAACATCATCATTGGCTC...ACCATCCTGTCCCTGCCAGGGTGCATGCATTCGGGGGTATAGAAAAATATAGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp AGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGTAGATCAGCCCCTTCCCGTGAGATCAACTCCACATACTaGGTCTCGCTGTGCACTGTG +
Preference number: 5 (lower is better)
Translates to: RERERERERKCRSAPSREINSTY*VSLCTV
Trigger: CACAGTGCACAGCGAGACCAAGTATGTGGAGTTGAT...CTCACGGGAAGGGGCTGATCTACATTTTCTCTCTCTCTCTCTCTCTCTCTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS TCA 90 bp ATATCACATCTGCCAGGTTCACAACAGATTTTGCAAAGTTGCTGGTaGGGACCACTGACTGCCGCATCTGCTCAAACAGCTGGTGGTCAT +
Preference number: 5 (lower is better)
Translates to: ISHLPGSQQILQSCW*GPLTAASAQTAGGH
Trigger: ATGACCACCAGCTGTTTGAGCAGATGCGGCAGTCAGTGGTCCTCACCAGCAACTTTGCAAAATCTGTTGTGAACCTGGCAGATGTGATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp CAGCAAGGACCAGTCAGGAGGGCAGACAGGAACATCTGTAAACTTACTACTCAGACAGATTTTGCAAAGTaGCTGGTGAGGACCACTGAC +
Preference number: 5 (lower is better)
Translates to: QQGPVRRADRNICKLTTQTDFAK*LVRTTD
Trigger: GTCAGTGGTCCTCACCAGCAACTTTGCAAAATCTGT...CTGAGTAGTAAGTTTACAGATGTTCCTGTCTGCCCTCCTGACTGGTCCTTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS TCA 90 bp TGCCAGGTTCACAACAGATTTTGCAAAGTTGCTGGTGAGGACCACTaGCTGCCGCATCTGCTCAAACAGCTGGTGGTCATTGATTACAAT +
Preference number: 5 (lower is better)
Translates to: CQVHNRFCKVAGEDH*LPHLLKQLVVIDYN
Trigger: ATTGTAATCAATGACCACCAGCTGTTTGAGCAGATGCGGCAGTCAGTGGTCCTCACCAGCAACTTTGCAAAATCTGTTGTGAACCTGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp CAGATGACATATTTACAGGATGCGGAGGGACCCAGGTCTGGGCCAGGTGAATGCAGAACAATTCTTGTGTaGAGCTGTTCCTTGTATATC +
Preference number: 5 (lower is better)
Translates to: QMTYLQDAEGPRSGPGECRTILV*SCSLYI
Trigger: GATATACAAGGAACAGCTCAACACAAGAATTGTTCT...GCATTCACCTGGCCCAGACCTGGGTCCCTCCGCATCCTGTAAATATGTCATCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS-3UTR CAA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAGAAAATGTAGATCAGCCCCTTCCCGTGAGGAGAACAATTCTTGTGTaGAGCTGTTCCTTGTATATC +
Preference number: 5 (lower is better)
Translates to: ERERERERENVDQPLPVRRTILV*SCSLYI
Trigger: GATATACAAGGAACAGCTCAACACAAGAATTGTTCT...CCTCACGGGAAGGGGCTGATCTACATTTTCTCTCTCTCTCTCTCTCTCTCTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 72 bp GCACAGGCGTCCCCCTGGGCGGATCCTGGCGGACCCTaGTGTCCAACTGTGGCTTTCGGACCTCTCCCCCGG +
Preference number: 6 (lower is better)
Translates to: AQASPWADPGGP*CPTVAFGPLPR
Trigger: CCGGGGGAGAGGTCCGAAAGCCACAGTTGGACACCAGGGTCCGCCAGGATCCGCCCAGGGGGACGCCTGTGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 72 bp TGGGCCAGGTGCACAGGCGTCCCCCTGGGCGGATCCTaGCGGACCCTGGTGTCCAACTGTGGCTTTCGGACC +
Preference number: 6 (lower is better)
Translates to: WARCTGVPLGGS*RTLVSNCGFRT
Trigger: GGTCCGAAAGCCACAGTTGGACACCAGGGTCCGCCAGGATCCGCCCAGGGGGACGCCTGTGCACCTGGCCCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 72 bp CTCTCTGGGCTCCCCACATGGGCTGAGCTCCTCCAGTaGAGAGCTCCTCTGGGACCCAGGGCCCCAAGACCG +
Preference number: 6 (lower is better)
Translates to: LSGLPTWAELLQ*RAPLGPRAPRP
Trigger: CGGTCTTGGGGCCCTGGGTCCCAGAGGAGCTCTGCACTGGAGGAGCTCAGCCCATGTGGGGAGCCCAGAGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 72 bp CCTGGGCGGATCCTGGCGGACCCTGGTGTCCAACTGTaGCTTTCGGACCTCTCCCCCGGAGCTCTGCCTTAC +
Preference number: 6 (lower is better)
Translates to: PGRILADPGVQL*LSDLSPGALPY
Trigger: GTAAGGCAGAGCTCCGGGGGAGAGGTCCGAAAGCCACAGTTGGACACCAGGGTCCGCCAGGATCCGCCCAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 72 bp ACTCGTTCACACCTCCACCCCGGGACAGTGAACAGATaGCTCCCACGTAGGCCGCCCCGCTGCTGGTGCTCT +
Preference number: 6 (lower is better)
Translates to: TRSHLHPGTVNR*LPRRPPRCWCS
Trigger: AGAGCACCAGCAGCGGGGCGGCCTACGTGGGAGGCATCTGTTCACTGTCCCGGGGTGGAGGTGTGAACGAGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 72 bp GCGTCTGGGCCAGGGTCACCGCCATGGCACCCATGTTaGCATACTCGTTCACACCTCCACCCCGGGACAGTG +
Preference number: 6 (lower is better)
Translates to: ASGPGSPPWHPC*HTRSHLHPGTV
Trigger: CACTGTCCCGGGGTGGAGGTGTGAACGAGTATGGCAACATGGGTGCCATGGCGGTGACCCTGGCCCAGACGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 72 bp CAGAAACGATCCGCAGCCGCATGGCCCCATAGGGCTTaGCACTGCCGGTCCCGGGTTTTACAGCGGCCTCCA +
Preference number: 6 (lower is better)
Translates to: QKRSAAAWPHRA*HCRSRVLQRPP
Trigger: TGGAGGCCGCTGTAAAACCCGGGACCGGCAGTGCCAAGCCCTATGGGGCCATGCGGCTGCGGATCGTTTCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 72 bp TCCAACTGTGGCTTTCGGACCTCTCCCCCGGAGCTCTaGCTTACCAGCCGGCTGGGCTCTGTGACCTCAGAG +
Preference number: 6 (lower is better)
Translates to: SNCGFRTSPPEL*LTSRLGSVTSE
Trigger: CTCTGAGGTCACAGAGCCCAGCCGGCTGGTAAGGCAGAGCTCCGGGGGAGAGGTCCGAAAGCCACAGTTGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 72 bp AAGTTTGAGTCGAAGGCCGGGATGACGAAACTCACCTaGGCCAGGTGCACAGGCGTCCCCCTGGGCGGATCC +
Preference number: 6 (lower is better)
Translates to: KFESKAGMTKLT*ARCTGVPLGGS
Trigger: GGATCCGCCCAGGGGGACGCCTGTGCACCTGGCCCAGGTGAGTTTCGTCATCCCGGCCTTCGACTCAAACTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 72 bp TGGTGCTCTGGAAGGTTCTACCCGAGAAGAGGTGGGTaGCATCACTGGGCTCAGGCAGACCCTCCCGCCGGT +
Preference number: 6 (lower is better)
Translates to: WCSGRFYPRRGG*HHWAQADPPAG
Trigger: ACCGGCGGGAGGGTCTGCCTGAGCCCAGTGATGCCACCCACCTCTTCTCGGGTAGAACCTTCCAGAGCACCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 72 bp GTGAACAGATGCCTCCCACGTAGGCCGCCCCGCTGCTaGTGCTCTGGAAGGTTCTACCCGAGAAGAGGTGGG +
Preference number: 6 (lower is better)
Translates to: VNRCLPRRPPRC*CSGRFYPRRGG
Trigger: CCCACCTCTTCTCGGGTAGAACCTTCCAGAGCACCAGCAGCGGGGCGGCCTACGTGGGAGGCATCTGTTCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CAA 72 bp AGCGTCTGGGCCAGGGTCACCGCCATGGCACCCATGTaGCCATACTCGTTCACACCTCCACCCCGGGACAGT +
Preference number: 6 (lower is better)
Translates to: SVWARVTAMAPM*PYSFTPPPRDS
Trigger: ACTGTCCCGGGGTGGAGGTGTGAACGAGTATGGCAACATGGGTGCCATGGCGGTGACCCTGGCCCAGACGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CAA 90 bp CAGAGCCCATCGCTGCACATGGCGTCGTGCGTCAAGGTGCATTTTTaGCAGCAGTTGCCCCCTGCTCGGCTGCACTCCTGCACCGACCCG +
Preference number: 6 (lower is better)
Translates to: QSPSLHMASCVKVHF*QQLPPARLHSCTDP
Trigger: CGGGTCGGTGCAGGAGTGCAGCCGAGCAGGGGGCAACTGCTGCAAAAAATGCACCTTGACGCACGACGCCATGTGCAGCGATGGGCTCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 72 bp AGGCTGGCAGGCAGCGGTGATCTAGGCACAACATGTTaGGCCCACAGGCCGTGCCGTCCTCCACATAGCTCA +
Preference number: 6 (lower is better)
Translates to: RLAGSGDLGTTC*AHRPCRPPHSS
Trigger: TGAGCTATGTGGAGGACGGCACGGCCTGTGGGCCCAACATGTTGTGCCTAGATCACCGCTGCCTGCCAGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CAA 90 bp TTCTGCCCTAGCGTCTGGGCCAGGGTCACCGCCATGGCACCCATGTaGCCATACTCGTTCACACCTCCACCCCGGGACAGTGAACAGATG +
Preference number: 6 (lower is better)
Translates to: FCPSVWARVTAMAPM*PYSFTPPPRDSEQM
Trigger: CATCTGTTCACTGTCCCGGGGTGGAGGTGTGAACGAGTATGGCAACATGGGTGCCATGGCGGTGACCCTGGCCCAGACGCTAGGGCAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 72 bp ACAGTGAACAGATGCCTCCCACGTAGGCCGCCCCGCTaGTGGTGCTCTGGAAGGTTCTACCCGAGAAGAGGT +
Preference number: 6 (lower is better)
Translates to: TVNRCLPRRPPR*WCSGRFYPRRG
Trigger: ACCTCTTCTCGGGTAGAACCTTCCAGAGCACCAGCAGCGGGGCGGCCTACGTGGGAGGCATCTGTTCACTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 72 bp GAGCTCCGGTGCTTATTCCACATCATGCCCAAGTTCTaGCCTAGCGTCTGGGCCAGGGTCACCGCCATGGCA +
Preference number: 6 (lower is better)
Translates to: ELRCLFHIMPKF*PSVWARVTAMA
Trigger: TGCCATGGCGGTGACCCTGGCCCAGACGCTAGGGCAGAACTTGGGCATGATGTGGAATAAGCACCGGAGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 72 bp GGTGATCTAGGCACAACATGTTGGGCCCACAGGCCGTaGCGTCCTCCACATAGCTCAGGTCCGAGCCATCAG +
Preference number: 6 (lower is better)
Translates to: GDLGTTCWAHRP*RPPHSSGPSHQ
Trigger: CTGATGGCTCGGACCTGAGCTATGTGGAGGACGGCACGGCCTGTGGGCCCAACATGTTGTGCCTAGATCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 72 bp AGCCGGGCCAGGGTCTCCAGTAGGTCATCCTGCACCTaGATCTTGTCCCCATCTGCCCACGTTTCCATGGCA +
Preference number: 6 (lower is better)
Translates to: SRARVSSRSSCT*ILSPSAHVSMA
Trigger: TGCCATGGAAACGTGGGCAGATGGGGACAAGATCCAGGTGCAGGATGACCTACTGGAGACCCTGGCCCGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 72 bp AGTTCTGCCCTAGCGTCTGGGCCAGGGTCACCGCCATaGCACCCATGTTGCCATACTCGTTCACACCTCCAC +
Preference number: 6 (lower is better)
Translates to: SSALASGPGSPP*HPCCHTRSHLH
Trigger: GTGGAGGTGTGAACGAGTATGGCAACATGGGTGCCATGGCGGTGACCCTGGCCCAGACGCTAGGGCAGAACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CAA 72 bp TCGCTGCACATGGCGTCGTGCGTCAAGGTGCATTTTTaGCAGCAGTTGCCCCCTGCTCGGCTGCACTCCTGC +
Preference number: 6 (lower is better)
Translates to: SLHMASCVKVHF*QQLPPARLHSC
Trigger: GCAGGAGTGCAGCCGAGCAGGGGGCAACTGCTGCAAAAAATGCACCTTGACGCACGACGCCATGTGCAGCGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 72 bp ACCATAAGCCGGGCCAGGGTCTCCAGTAGGTCATCCTaGACCTGGATCTTGTCCCCATCTGCCCACGTTTCC +
Preference number: 6 (lower is better)
Translates to: TISRARVSSRSS*TWILSPSAHVS
Trigger: GGAAACGTGGGCAGATGGGGACAAGATCCAGGTGCAGGATGACCTACTGGAGACCCTGGCCCGGCTTATGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 72 bp AGTCCCCTGCTGAGCTCCGGTGCTTATTCCACATCATaGCCAAGTTCTGCCCTAGCGTCTGGGCCAGGGTCA +
Preference number: 6 (lower is better)
Translates to: SPLLSSGAYSTS*PSSALASGPGS
Trigger: TGACCCTGGCCCAGACGCTAGGGCAGAACTTGGGCATGATGTGGAATAAGCACCGGAGCTCAGCAGGGGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 72 bp AGGGGCTTGTTGAACAGGCAGCTCCCGCCTCCCTCCTaGAGAAACTGGTTGTATTCGTCGATGCTGCAGCGC +
Preference number: 6 (lower is better)
Translates to: RGLLNRQLPPPS*RNWLYSSMLQR
Trigger: GCGCTGCAGCATCGACGAATACAACCAGTTTCTGCAGGAGGGAGGCGGGAGCTGCCTGTTCAACAAGCCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 72 bp CAGCCCCTGGCATGTAGAGAGTGCAGCAAAGGACTGTaGGTTGCCCCGGAGTTTCCCATGGTAGTAGCAGTG +
Preference number: 6 (lower is better)
Translates to: QPLACRECSKGL*VAPEFPMVVAV
Trigger: CACTGCTACTACCATGGGAAACTCCGGGGCAACCCACAGTCCTTTGCTGCACTCTCTACATGCCAGGGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 72 bp TTATTCCACATCATGCCCAAGTTCTGCCCTAGCGTCTaGGCCAGGGTCACCGCCATGGCACCCATGTTGCCA +
Preference number: 6 (lower is better)
Translates to: LFHIMPKFCPSV*ARVTAMAPMLP
Trigger: TGGCAACATGGGTGCCATGGCGGTGACCCTGGCCCAGACGCTAGGGCAGAACTTGGGCATGATGTGGAATAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 72 bp TCTCTCAGTCTCCCCAGTGGGAGGGGACGTGGGCAGTaGGTTGTGAATACTGCAGTCTTTGCCTGTCCAGTC +
Preference number: 6 (lower is better)
Translates to: SLSLPSGRGRGQ*VVNTAVFACPV
Trigger: GACTGGACAGGCAAAGACTGCAGTATTCACAACCCACTGCCCACGTCCCCTCCCACTGGGGAGACTGAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CAA 72 bp ACATCCTGCTTACTGCACTGGACCCAACCAGATCCCTaGCGTCCACAGTTTCCACGCTCTGTCCCCTCCACG +
Preference number: 6 (lower is better)
Translates to: TSCLLHWTQPDP*RPQFPRSVPST
Trigger: CGTGGAGGGGACAGAGCGTGGAAACTGTGGACGCAAGGGATCTGGTTGGGTCCAGTGCAGTAAGCAGGATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS TCA 72 bp GAGGTGATGGTTCAGCTCCAGGTCCAGAGTGAAGTTTaGGTCGAAGGCCGGGATGACGAAACTCACCTGGGC +
Preference number: 6 (lower is better)
Translates to: EVMVQLQVQSEV*VEGRDDETHLG
Trigger: GCCCAGGTGAGTTTCGTCATCCCGGCCTTCGACTCAAACTTCACTCTGGACCTGGAGCTGAACCATCACCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 72 bp CGCCTCCCTCCTGCAGAAACTGGTTGTATTCGTCGATaGTGCAGCGCGAGAACTTGCGGGGCAAATAGAACC +
Preference number: 6 (lower is better)
Translates to: RLPPAETGCIRR*CSARTCGANRT
Trigger: GGTTCTATTTGCCCCGCAAGTTCTCGCGCTGCAGCATCGACGAATACAACCAGTTTCTGCAGGAGGGAGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 72 bp GTCAGGTTGCCATCAGAGAAGACCCCATGCAGCCCCTaGCATGTAGAGAGTGCAGCAAAGGACTGTGGGTTG +
Preference number: 6 (lower is better)
Translates to: VRLPSEKTPCSP*HVESAAKDCGL
Trigger: CAACCCACAGTCCTTTGCTGCACTCTCTACATGCCAGGGGCTGCATGGGGTCTTCTCTGATGGCAACCTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 72 bp TTGAACAGGCAGCTCCCGCCTCCCTCCTGCAGAAACTaGTTGTATTCGTCGATGCTGCAGCGCGAGAACTTG +
Preference number: 6 (lower is better)
Translates to: LNRQLPPPSCRN*LYSSMLQRENL
Trigger: CAAGTTCTCGCGCTGCAGCATCGACGAATACAACCAGTTTCTGCAGGAGGGAGGCGGGAGCTGCCTGTTCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CAA 72 bp TCCTCCATGATGCAGCCCAGCCAAATGTCTGGACACTaGCAGTCCCCTGCTGAGCTCCGGTGCTTATTCCAC +
Preference number: 6 (lower is better)
Translates to: SSMMQPSQMSGH*QSPAELRCLFH
Trigger: GTGGAATAAGCACCGGAGCTCAGCAGGGGACTGCAAGTGTCCAGACATTTGGCTGGGCTGCATCATGGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 72 bp CTCCCTCCTGCAGAAACTGGTTGTATTCGTCGATGCTaGAGCGCGAGAACTTGCGGGGCAAATAGAACCCAG +
Preference number: 6 (lower is better)
Translates to: LPPAETGCIRRC*SARTCGANRTQ
Trigger: CTGGGTTCTATTTGCCCCGCAAGTTCTCGCGCTGCAGCATCGACGAATACAACCAGTTTCTGCAGGAGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 72 bp CTGTCCAGTCTGGCTGACAGATACACTTCCCCTCGTTaGTGCAAACCCCATGATGGGAGCAGATCCTTCGCT +
Preference number: 6 (lower is better)
Translates to: LSSLADRYTSPR*CKPHDGSRSFA
Trigger: AGCGAAGGATCTGCTCCCATCATGGGGTTTGCAGCAACGAGGGGAAGTGTATCTGTCAGCCAGACTGGACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 72 bp CAATCAACTCCACATACTTGGTCTCGCTGTGCACTGTaGGGTGGCCCCTGCGGACCTGCCTTTTCCTTCTTA +
Preference number: 6 (lower is better)
Translates to: QSTPHTWSRCAL*GGPCGPAFSFL
Trigger: TAAGAAGGAAAAGGCAGGTCCGCAGGGGCCACCCCACAGTGCACAGCGAGACCAAGTATGTGGAGTTGATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CAA 72 bp ATGGAGCCAATGATGATGTTGGTACCGCTGGGACCTTaGTATCTCTCAGTCTCCCCAGTGGGAGGGGACGTG +
Preference number: 6 (lower is better)
Translates to: MEPMMMLVPLGP*YLSVSPVGGDV
Trigger: CACGTCCCCTCCCACTGGGGAGACTGAGAGATACAAAGGTCCCAGCGGTACCAACATCATCATTGGCTCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CCA 72 bp TGGGTTGTGAATACTGCAGTCTTTGCCTGTCCAGTCTaGCTGACAGATACACTTCCCCTCGTTGCTGCAAAC +
Preference number: 6 (lower is better)
Translates to: WVVNTAVFACPV*LTDTLPLVAAN
Trigger: GTTTGCAGCAACGAGGGGAAGTGTATCTGTCAGCCAGACTGGACAGGCAAAGACTGCAGTATTCACAACCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS TCA 72 bp CACAACAGATTTTGCAAAGTTGCTGGTGAGGACCACTaGCTGCCGCATCTGCTCAAACAGCTGGTGGTCATT +
Preference number: 6 (lower is better)
Translates to: HNRFCKVAGEDH*LPHLLKQLVVI
Trigger: AATGACCACCAGCTGTTTGAGCAGATGCGGCAGTCAGTGGTCCTCACCAGCAACTTTGCAAAATCTGTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS GCA 72 bp GCAAAGTTGCTGGTGAGGACCACTGACTGCCGCATCTaGTCAAACAGCTGGTGGTCATTGATTACAATCAAC +
Preference number: 6 (lower is better)
Translates to: AKLLVRTTDCRI*SNSWWSLITIN
Trigger: GTTGATTGTAATCAATGACCACCAGCTGTTTGAGCAGATGCGGCAGTCAGTGGTCCTCACCAGCAACTTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CAA 72 bp ATCACATCTGCCAGGTTCACAACAGATTTTGCAAAGTaGCTGGTGAGGACCACTGACTGCCGCATCTGCTCA +
Preference number: 6 (lower is better)
Translates to: ITSARFTTDFAK*LVRTTDCRICS
Trigger: TGAGCAGATGCGGCAGTCAGTGGTCCTCACCAGCAACTTTGCAAAATCTGTTGTGAACCTGGCAGATGTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS CAA 90 bp TCCTTGTATATCACATCTGCCAGGTTCACAACAGATTTTGCAAAGTaGCTGGTGAGGACCACTGACTGCCGCATCTGCTCAAACAGCTGG +
Preference number: 6 (lower is better)
Translates to: SLYITSARFTTDFAK*LVRTTDCRICSNSW
Trigger: CCAGCTGTTTGAGCAGATGCGGCAGTCAGTGGTCCTCACCAGCAACTTTGCAAAATCTGTTGTGAACCTGGCAGATGTGATATACAAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10
CDS TCA 72 bp CTGACTGCCGCATCTGCTCAAACAGCTGGTGGTCATTaGTTACAATCAACTCCACATACTTGGTCTCGCTGT +
Preference number: 6 (lower is better)
Translates to: LTAASAQTAGGH*LQSTPHTWSRC
Trigger: ACAGCGAGACCAAGTATGTGGAGTTGATTGTAATCAATGACCACCAGCTGTTTGAGCAGATGCGGCAGTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068150.7
ENSMUST00000103081.10