Pregenerated sensors for ACYP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000060923

Ensembl transcript IDs: ENSMUST00000074613.4

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 72 bp	CTTGCACTGTCCCGAACACTTCGTAGTCCACAGACTTaGGCAGCTCGGTCATGGCGGCCAGCCTTCTCCCGA	+
Preference number: 6 (lower is better) Translates to: LALSRTLRSPQT*AARSWRPAFSR Trigger: TCGGGAGAAGGCTGGCCGCCATGACCGAGCTGCTCAAGTCTGTGGACTACGAAGTGTTCGGGACAGTGCAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074613.4
CDS GCA 72 bp	CTTCGGGGCCTTGAACTTGACCTGTCACTGTGCCTTTaGTTGTGTTCTTCACCCAGCCAACCAGACCTCGTT	+
Preference number: 6 (lower is better) Translates to: LRGLELDLSLCL*LCSSPSQPDLV Trigger: AACGAGGTCTGGTTGGCTGGGTGAAGAACACAAGCAAAGGCACAGTGACAGGTCAAGTTCAAGGCCCCGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074613.4
CDS CAA 72 bp	CGGGGCCTTGAACTTGACCTGTCACTGTGCCTTTGCTaGTGTTCTTCACCCAGCCAACCAGACCTCGTTTCT	+
Preference number: 6 (lower is better) Translates to: RGLELDLSLCLC*CSSPSQPDLVS Trigger: AGAAACGAGGTCTGGTTGGCTGGGTGAAGAACACAAGCAAAGGCACAGTGACAGGTCAAGTTCAAGGCCCCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074613.4
CDS CAA 90 bp	CAGCCAGGACTTCATGGCATCAACCTTTTCTTCGGGGCCTTGAACTaGACCTGTCACTGTGCCTTTGCTTGTGTTCTTCACCCAGCCAAC	+
Preference number: 6 (lower is better) Translates to: QPGLHGINLFFGALN*TCHCAFACVLHPAN Trigger: GTTGGCTGGGTGAAGAACACAAGCAAAGGCACAGTGACAGGTCAAGTTCAAGGCCCCGAAGAAAAGGTTGATGCCATGAAGTCCTGGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074613.4
CDS CAA 90 bp	CTTGCTCAGCCAGGACTTCATGGCATCAACCTTTTCTTCGGGGCCTaGAACTTGACCTGTCACTGTGCCTTTGCTTGTGTTCTTCACCCA	+
Preference number: 6 (lower is better) Translates to: LAQPGLHGINLFFGA*NLTCHCAFACVLHP Trigger: TGGGTGAAGAACACAAGCAAAGGCACAGTGACAGGTCAAGTTCAAGGCCCCGAAGAAAAGGTTGATGCCATGAAGTCCTGGCTGAGCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074613.4
CDS CAA 72 bp	CCAGGACTTCATGGCATCAACCTTTTCTTCGGGGCCTaGAACTTGACCTGTCACTGTGCCTTTGCTTGTGTT	+
Preference number: 6 (lower is better) Translates to: PGLHGINLFFGA*NLTCHCAFACV Trigger: AACACAAGCAAAGGCACAGTGACAGGTCAAGTTCAAGGCCCCGAAGAAAAGGTTGATGCCATGAAGTCCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074613.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu