Pregenerated sensors for ACTRT2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051276Ensembl transcript IDs: ENSMUST00000060062.5
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | GGCCATGGGAGAGGCTCTCTTCCCATGGGTGTCCCTTaGAAGGGACACTGCAGCTACTGGGACTGTGCAGCC | + |
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Preference number: 3 (lower is better) Translates to: GHGRGSLPMGVP*KGHCSYWDCAA Trigger: GGCTGCACAGTCCCAGTAGCTGCAGTGTCCCTTGCAAGGGACACCCATGGGAAGAGAGCCTCTCCCATGGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS-3UTR CCA 90 bp | GGCCATGGGAGAGGCTCTCTTCCCATGGGTGTCCCTTGCAAGGGACACTGCAGCGCCAGCCCTGGACCATaGGTGCCCAACTGGTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: GHGRGSLPMGVPCKGHCSASPGP*VPNWSG Trigger: ACCAGACCAGTTGGGCACCCATGGTCCAGGGCTGGC...GCTGCAGTGTCCCTTGCAAGGGACACCCATGGGAAGAGAGCCTCTCCCATGGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS-3UTR TCA 90 bp | GGCCATGGGAGAGGCTCTCTTCCCATGGGTGTCCCTTGCAAGGGACACTGCAGCCCACGACAGAGCTGGTaGCATGACGGGGCCCAATCT | + |
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Preference number: 4 (lower is better) Translates to: GHGRGSLPMGVPCKGHCSPRQSW*HDGAQS Trigger: AGATTGGGCCCCGTCATGTCACCAGCTCTGTCGTGG...GCTGCAGTGTCCCTTGCAAGGGACACCCATGGGAAGAGAGCCTCTCCCATGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS-3UTR TCA 90 bp | GGCCATGGGAGAGGCTCTCTTCCCATGGGTGTCCCTTGCAAGGGACACTGCAGCAGCACAGCTTCTCCTTaGTGTCATCCGCCAGGGCCT | + |
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Preference number: 4 (lower is better) Translates to: GHGRGSLPMGVPCKGHCSSTASP*CHPPGP Trigger: AGGCCCTGGCGGATGACATCAAGGAGAAGCTGTGCT...GCTGCAGTGTCCCTTGCAAGGGACACCCATGGGAAGAGAGCCTCTCCCATGGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS-3UTR CCA 90 bp | GGCCATGGGAGAGGCTCTCTTCCCATGGGTGTCCCTTGCAAGGGACACTGCAGCCAGGGCCTTTTCCAGTaGGCATGGAAAGGCTCGTCC | + |
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Preference number: 4 (lower is better) Translates to: GHGRGSLPMGVPCKGHCSQGLFQ*AWKGSS Trigger: GGACGAGCCTTTCCATGCCCACTGGAAAAGGCCCTG...GCTGCAGTGTCCCTTGCAAGGGACACCCATGGGAAGAGAGCCTCTCCCATGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| 3UTR CAA 72 bp | AGGCCATGGGAGAGGCTCTCTTCCCATGGGTGTCCCTaGCAAGGGACACTGCAGCTACTGGGACTGTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: RPWERLSSHGCP*QGTLQLLGLCS Trigger: GCTGCACAGTCCCAGTAGCTGCAGTGTCCCTTGCAAGGGACACCCATGGGAAGAGAGCCTCTCCCATGGCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS-3UTR GCA 90 bp | GGCCATGGGAGAGGCTCTCTTCCCATGGGTGTCCCTTGCAAGGGACACTGCAGCCTCCCCAGACAGTCCTaGCTTACAGAGTCCAGATCC | + |
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Preference number: 4 (lower is better) Translates to: GHGRGSLPMGVPCKGHCSLPRQS*LTESRS Trigger: GGATCTGGACTCTGTAAGGCAGGACTGTCTGGGGAG...GCTGCAGTGTCCCTTGCAAGGGACACCCATGGGAAGAGAGCCTCTCCCATGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS-3UTR GCA 90 bp | GGCCATGGGAGAGGCTCTCTTCCCATGGGTGTCCCTTGCAAGGGACACTGCAGCGGTTATGCTGTTAGATaGCATCTGTGCCAGCCCTGG | + |
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Preference number: 4 (lower is better) Translates to: GHGRGSLPMGVPCKGHCSGYAVR*HLCQPW Trigger: CCAGGGCTGGCACAGATGGCATCTAACAGCATAACC...GCTGCAGTGTCCCTTGCAAGGGACACCCATGGGAAGAGAGCCTCTCCCATGGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS-3UTR CCA 90 bp | CATGGGAGAGGCTCTCTTCCCATGGGTGTCCCTTGCAAGGGACACTGCAGCTACCCATGGGTGCCCAACTaGTCTGGTGAGAACAGGACC | + |
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Preference number: 4 (lower is better) Translates to: HGRGSLPMGVPCKGHCSYPWVPN*SGENRT Trigger: GGTCCTGTTCTCACCAGACCAGTTGGGCACCCATGG...GTAGCTGCAGTGTCCCTTGCAAGGGACACCCATGGGAAGAGAGCCTCTCCCATG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS-3UTR CCA 90 bp | TCATCTTTAATTAAATGTGGTGCTAAAGGCCATGGGAGAGGCTCTCTTCCCATGTCTCGCGATTCTCCCTaGGGTTCAGGGAGGGTTCCG | + |
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Preference number: 4 (lower is better) Translates to: SSLIKCGAKGHGRGSLPMSRDSP*GSGRVP Trigger: CGGAACCCTCCCTGAACCCCAGGGAGAATCGCGAGA...CATGGGAAGAGAGCCTCTCCCATGGCCTTTAGCACCACATTTAATTAAAGATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS-3UTR CCA 90 bp | TCATCTTTAATTAAATGTGGTGCTAAAGGCCATGGGAGAGGCTCTCTTCCCATGCATCTGTGCCAGCCCTaGACCATGGGTGCCCAACTG | + |
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Preference number: 4 (lower is better) Translates to: SSLIKCGAKGHGRGSLPMHLCQP*TMGAQL Trigger: CAGTTGGGCACCCATGGTCCAGGGCTGGCACAGATG...CATGGGAAGAGAGCCTCTCCCATGGCCTTTAGCACCACATTTAATTAAAGATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS-3UTR TCA 90 bp | TCATCTTTAATTAAATGTGGTGCTAAAGGCCATGGGAGAGGCTCTCTTCCCATGCAGCACTGCCTGGTCTaGCAGGTAGAAGGCAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: SSLIKCGAKGHGRGSLPMQHCLV*QVEGRY Trigger: GTACCTGCCTTCTACCTGTCAGACCAGGCAGTGCTG...CATGGGAAGAGAGCCTCTCCCATGGCCTTTAGCACCACATTTAATTAAAGATGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS-3UTR TCA 90 bp | CACTATTCATCTTTAATTAAATGTGGTGCTAAAGGCCATGGGAGAGGCTCTCTTAGCTGCTCAGAGACGTaGCAATGGAGGCCCCGATCC | + |
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Preference number: 4 (lower is better) Translates to: HYSSLIKCGAKGHGRGSLSCSET*QWRPRS Trigger: GGATCGGGGCCTCCATTGTCACGTCTCTGAGCAGCT...AAGAGAGCCTCTCCCATGGCCTTTAGCACCACATTTAATTAAAGATGAATAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS-3UTR GCA 90 bp | TATTCATCTTTAATTAAATGTGGTGCTAAAGGCCATGGGAGAGGCTCTCTTCCCGTTAGATGCCATCTGTaGCAGCCCTGGACCATGGGT | + |
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Preference number: 4 (lower is better) Translates to: YSSLIKCGAKGHGRGSLPVRCHL*QPWTMG Trigger: ACCCATGGTCCAGGGCTGGCACAGATGGCATCTAAC...GGGAAGAGAGCCTCTCCCATGGCCTTTAGCACCACATTTAATTAAAGATGAATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS-3UTR GCA 90 bp | TCATCTTTAATTAAATGTGGTGCTAAAGGCCATGGGAGAGGCTCTCTTCCCATGAAACTCTTTGAAGTCTaGAGCAGTGATCCACATCTG | + |
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Preference number: 4 (lower is better) Translates to: SSLIKCGAKGHGRGSLPMKLFEV*SSDPHL Trigger: CAGATGTGGATCACTGCTGCAGACTTCAAAGAGTTT...CATGGGAAGAGAGCCTCTCCCATGGCCTTTAGCACCACATTTAATTAAAGATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS CCA 90 bp | CAGCTTCTCCTTGATGTCATCCGCCAGGGCCTTTTCCAGTGGGCATaGAAAGGCTCGTCCACTGGCCAGCAGCAGCCGGGTGAGGAGCTC | + |
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Preference number: 5 (lower is better) Translates to: QLLLDVIRQGLFQWA*KGSSTGQQQPGEEL Trigger: GAGCTCCTCACCCGGCTGCTGCTGGCCAGTGGACGAGCCTTTCCATGCCCACTGGAAAAGGCCCTGGCGGATGACATCAAGGAGAAGCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS-3UTR CAA 90 bp | GGCCATGGGAGAGGCTCTCTTCCCATGGGTGTCCCTTGCAAGGGACACTGCAGCGGCGGCGCTGTGATTTaGATGGGGACCCCCTTGGAA | + |
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Preference number: 5 (lower is better) Translates to: GHGRGSLPMGVPCKGHCSGGAVI*MGTPLE Trigger: TTCCAAGGGGGTCCCCATCAAAATCACAGCGCCGCC...GCTGCAGTGTCCCTTGCAAGGGACACCCATGGGAAGAGAGCCTCTCCCATGGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS TCA 90 bp | TGCCATCTGTGCCAGCCCTGGACCATGGGTGCCCAACTGGTCTGGTaGGAACAGGACCTCAGGAGCCTGGTACAGCTGGTCTCCGATGTA | + |
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Preference number: 5 (lower is better) Translates to: CHLCQPWTMGAQLVW*EQDLRSLVQLVSDV Trigger: TACATCGGAGACCAGCTGTACCAGGCTCCTGAGGTCCTGTTCTCACCAGACCAGTTGGGCACCCATGGTCCAGGGCTGGCACAGATGGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS CCA 90 bp | CTGTTAGATGCCATCTGTGCCAGCCCTGGACCATGGGTGCCCAACTaGTCTGGTGAGAACAGGACCTCAGGAGCCTGGTACAGCTGGTCT | + |
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Preference number: 5 (lower is better) Translates to: LLDAICASPGPWVPN*SGENRTSGAWYSWS Trigger: AGACCAGCTGTACCAGGCTCCTGAGGTCCTGTTCTCACCAGACCAGTTGGGCACCCATGGTCCAGGGCTGGCACAGATGGCATCTAACAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS-3UTR CAA 90 bp | CATGGGAGAGGCTCTCTTCCCATGGGTGTCCCTTGCAAGGGACACTGCAGCTACTTCCCGTCGGGCAGTTaGTACTCTCTCAAGACATCT | + |
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Preference number: 5 (lower is better) Translates to: HGRGSLPMGVPCKGHCSYFPSGS*YSLKTS Trigger: AGATGTCTTGAGAGAGTACAAACTGCCCGACGGGAA...GTAGCTGCAGTGTCCCTTGCAAGGGACACCCATGGGAAGAGAGCCTCTCCCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS GCA 90 bp | GAGTGTCTTCTGTATGTCAGCATCACACTTGGTTATGCTGTTAGATaGCATCTGTGCCAGCCCTGGACCATGGGTGCCCAACTGGTCTGG | + |
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Preference number: 5 (lower is better) Translates to: ECLLYVSITLGYAVR*HLCQPWTMGAQLVW Trigger: CCAGACCAGTTGGGCACCCATGGTCCAGGGCTGGCACAGATGGCATCTAACAGCATAACCAAGTGTGATGCTGACATACAGAAGACACTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS TCA 90 bp | AGAACAGGACCTCAGGAGCCTGGTACAGCTGGTCTCCGATGTAAATaGCATTCCCGTCGGGCAGTTTGTACTCTCTCAAGACATCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: RTGPQEPGTAGLRCK*HSRRAVCTLSRHLL Trigger: CAGAAGATGTCTTGAGAGAGTACAAACTGCCCGACGGGAATGTCATTTACATCGGAGACCAGCTGTACCAGGCTCCTGAGGTCCTGTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS-3UTR CAA 90 bp | TCATCTTTAATTAAATGTGGTGCTAAAGGCCATGGGAGAGGCTCTCTTCCCATGTTGATGGGGACCCCCTaGGAAGCCAGCTGTTCCAGT | + |
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Preference number: 5 (lower is better) Translates to: SSLIKCGAKGHGRGSLPMLMGTP*EASCSS Trigger: ACTGGAACAGCTGGCTTCCAAGGGGGTCCCCATCAA...CATGGGAAGAGAGCCTCTCCCATGGCCTTTAGCACCACATTTAATTAAAGATGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS-3UTR CAA 90 bp | TATTCATCTTTAATTAAATGTGGTGCTAAAGGCCATGGGAGAGGCTCTCTTCCCCTCAAGGCCTCCTGTTaGTACAGGGCTTCTTCCCCG | + |
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Preference number: 5 (lower is better) Translates to: YSSLIKCGAKGHGRGSLPLKASC*YRASSP Trigger: CGGGGAAGAAGCCCTGTACAAACAGGAGGCCTTGAG...GGGAAGAGAGCCTCTCCCATGGCCTTTAGCACCACATTTAATTAAAGATGAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS TCA 72 bp | TGCCAGCCCTGGACCATGGGTGCCCAACTGGTCTGGTaGGAACAGGACCTCAGGAGCCTGGTACAGCTGGTC | + |
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Preference number: 6 (lower is better) Translates to: CQPWTMGAQLVW*EQDLRSLVQLV Trigger: GACCAGCTGTACCAGGCTCCTGAGGTCCTGTTCTCACCAGACCAGTTGGGCACCCATGGTCCAGGGCTGGCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS GCA 72 bp | CCCGTCGGGCAGTTTGTACTCTCTCAAGACATCTTCTaGCCGCCGAGACAGCTCCTCCTCAGGCTCCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: PVGQFVLSQDIF*PPRQLLLRLQG Trigger: GCCCTGGAGCCTGAGGAGGAGCTGTCTCGGCGGGCAGAAGATGTCTTGAGAGAGTACAAACTGCCCGACGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS CCA 72 bp | CTTGATGTCATCCGCCAGGGCCTTTTCCAGTGGGCATaGAAAGGCTCGTCCACTGGCCAGCAGCAGCCGGGT | + |
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Preference number: 6 (lower is better) Translates to: LDVIRQGLFQWA*KGSSTGQQQPG Trigger: ACCCGGCTGCTGCTGGCCAGTGGACGAGCCTTTCCATGCCCACTGGAAAAGGCCCTGGCGGATGACATCAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS CCA 72 bp | GCCATCTGTGCCAGCCCTGGACCATGGGTGCCCAACTaGTCTGGTGAGAACAGGACCTCAGGAGCCTGGTAC | + |
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Preference number: 6 (lower is better) Translates to: AICASPGPWVPN*SGENRTSGAWY Trigger: GTACCAGGCTCCTGAGGTCCTGTTCTCACCAGACCAGTTGGGCACCCATGGTCCAGGGCTGGCACAGATGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS CCA 72 bp | CTTCTCCTTGATGTCATCCGCCAGGGCCTTTTCCAGTaGGCATGGAAAGGCTCGTCCACTGGCCAGCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: LLLDVIRQGLFQ*AWKGSSTGQQQ Trigger: CTGCTGCTGGCCAGTGGACGAGCCTTTCCATGCCCACTGGAAAAGGCCCTGGCGGATGACATCAAGGAGAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS CCA 72 bp | ATGCTGTTAGATGCCATCTGTGCCAGCCCTGGACCATaGGTGCCCAACTGGTCTGGTGAGAACAGGACCTCA | + |
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Preference number: 6 (lower is better) Translates to: MLLDAICASPGP*VPNWSGENRTS Trigger: TGAGGTCCTGTTCTCACCAGACCAGTTGGGCACCCATGGTCCAGGGCTGGCACAGATGGCATCTAACAGCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS GCA 72 bp | AGCATCACACTTGGTTATGCTGTTAGATGCCATCTGTaGCAGCCCTGGACCATGGGTGCCCAACTGGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: SITLGYAVRCHL*QPWTMGAQLVW Trigger: CCAGACCAGTTGGGCACCCATGGTCCAGGGCTGGCACAGATGGCATCTAACAGCATAACCAAGTGTGATGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS TCA 72 bp | CCTCAGGAGCCTGGTACAGCTGGTCTCCGATGTAAATaGCATTCCCGTCGGGCAGTTTGTACTCTCTCAAGA | + |
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Preference number: 6 (lower is better) Translates to: PQEPGTAGLRCK*HSRRAVCTLSR Trigger: TCTTGAGAGAGTACAAACTGCCCGACGGGAATGTCATTTACATCGGAGACCAGCTGTACCAGGCTCCTGAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS CAA 90 bp | GGCCCAATCTCCCCAGACAGTCCTGCCTTACAGAGTCCAGATCCGTaGTCAAAAATCACAGAAGGAGAATCTAGTACCAGTGGGTTAAAC | + |
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Preference number: 6 (lower is better) Translates to: GPISPDSPALQSPDP*SKITEGESSTSGLN Trigger: GTTTAACCCACTGGTACTAGATTCTCCTTCTGTGATTTTTGACAACGGATCTGGACTCTGTAAGGCAGGACTGTCTGGGGAGATTGGGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS CAA 90 bp | AAGACAATCTCCCCAAAGAGTGTCTTCTGTATGTCAGCATCACACTaGGTTATGCTGTTAGATGCCATCTGTGCCAGCCCTGGACCATGG | + |
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Preference number: 6 (lower is better) Translates to: KTISPKSVFCMSASH*VMLLDAICASPGPW Trigger: CCATGGTCCAGGGCTGGCACAGATGGCATCTAACAGCATAACCAAGTGTGATGCTGACATACAGAAGACACTCTTTGGGGAGATTGTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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| CDS CAA 72 bp | TCCCCAGACAGTCCTGCCTTACAGAGTCCAGATCCGTaGTCAAAAATCACAGAAGGAGAATCTAGTACCAGT | + |
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Preference number: 6 (lower is better) Translates to: SPDSPALQSPDP*SKITEGESSTS Trigger: ACTGGTACTAGATTCTCCTTCTGTGATTTTTGACAACGGATCTGGACTCTGTAAGGCAGGACTGTCTGGGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060062.5 |
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