Pregenerated sensors for ACTRT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046615Ensembl transcript IDs: ENSMUST00000059466.3
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | CCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGTGGAGAACCTCAGGCACCTaGCACAGGTGGTCACTCATC | + |
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Preference number: 4 (lower is better) Translates to: PTNTPCHLVFIVVPRVWWRTSGT*HRWSLI Trigger: GATGAGTGACCACCTGTGCCAGGTGCCTGAGGTTCT...CCACCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR TCA 90 bp | CTTCCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGCCACCACTGCTTTGTTaGGGATGCAGGGGAAGGTGT | + |
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Preference number: 4 (lower is better) Translates to: LPTNTPCHLVFIVVPRVWPPLLC*GCRGRC Trigger: ACACCTTCCCCTGCATCCTCAACAAAGCAGTGGTGG...CCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR CCA 90 bp | CCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGTGGGGCACCTGGCACAGGTaGTCACTCATCTGGATAGTA | + |
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Preference number: 4 (lower is better) Translates to: PTNTPCHLVFIVVPRVWWGTWHR*SLIWIV Trigger: TACTATCCAGATGAGTGACCACCTGTGCCAGGTGCC...CCACCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR TCA 90 bp | CCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGTGGCCATCATACATGCACTaGGCTTCTTCTCCCACAAAG | + |
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Preference number: 4 (lower is better) Translates to: PTNTPCHLVFIVVPRVWWPSYMH*ASSPTK Trigger: CTTTGTGGGAGAAGAAGCTCAGTGCATGTATGATGG...CCACCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR GCA 90 bp | CTTCCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGCTCCTACTGCGTGGTTaGAAAGATACAAGGCAGGCA | + |
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Preference number: 4 (lower is better) Translates to: LPTNTPCHLVFIVVPRVWLLLRG*KDTRQA Trigger: TGCCTGCCTTGTATCTTTGCAACCACGCAGTAGGAG...CCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR CCA 90 bp | CCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGTGGAGGTGGTCACTCATCTaGATAGTATTCCCATCTGGC | + |
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Preference number: 4 (lower is better) Translates to: PTNTPCHLVFIVVPRVWWRWSLI*IVFPSG Trigger: GCCAGATGGGAATACTATCCAGATGAGTGACCACCT...CCACCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR GCA 90 bp | CCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGTGGGCAGTGACCCACATCTaGTTGAATGTTGTCATGGAT | + |
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Preference number: 4 (lower is better) Translates to: PTNTPCHLVFIVVPRVWWAVTHI*LNVVMD Trigger: ATCCATGACAACATTCAAGCAGATGTGGGTCACTGC...CCACCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR TCA 90 bp | CTTCCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGCAGTGTCACAGTTCATaGTGCTGTTGCAGACCATTT | + |
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Preference number: 4 (lower is better) Translates to: LPTNTPCHLVFIVVPRVWQCHSS*CCCRPF Trigger: AAATGGTCTGCAACAGCATCATGAACTGTGACACTG...CCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGGAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR TCA 90 bp | CCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGTGGCGAATAACATCTGTCTaGGGAAGCTGTGATCTTGAT | + |
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Preference number: 4 (lower is better) Translates to: PTNTPCHLVFIVVPRVWWRITSV*GSCDLD Trigger: ATCAAGATCACAGCTTCCTCAGACAGATGTTATTCG...CCACCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR CCA 90 bp | CTTCCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGAAACTGGTTGTTCATTaGGTTTCACTCCTAGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: LPTNTPCHLVFIVVPRVWKLVVH*VSLLAP Trigger: GGGAGCTAGGAGTGAAACCCAATGAACAACCAGTTT...CCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGGAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR CCA 90 bp | CTTCCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGGCAAACAGATTCTCCTaGATGTCAGTGTCACAGTTC | + |
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Preference number: 4 (lower is better) Translates to: LPTNTPCHLVFIVVPRVWANRFS*MSVSQF Trigger: GAACTGTGACACTGACATCCAGGAGAATCTGTTTGC...CCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGGAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR GCA 90 bp | CCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGTGGTCTTTGAACCACAAATaGCCCATACTCTTTGAAGTC | + |
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Preference number: 4 (lower is better) Translates to: PTNTPCHLVFIVVPRVWWSLNHK*PILFEV Trigger: GACTTCAAAGAGTATGGGGCATTTGTGGTTCAAAGA...CCACCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR CCA 90 bp | CTTCCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGTGGTATGTTGAATTTTaGGTGCCCAACGACAGAGTT | + |
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Preference number: 4 (lower is better) Translates to: LPTNTPCHLVFIVVPRVWWYVEF*VPNDRV Trigger: AACTCTGTCGTTGGGCACCCAAAATTCAACATACCA...CCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGGAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR CCA 90 bp | CCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGTGGCTCAGTCATGAAAACTaGTTGTTCATTGGGTTTCAC | + |
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Preference number: 4 (lower is better) Translates to: PTNTPCHLVFIVVPRVWWLSHEN*LFIGFH Trigger: GTGAAACCCAATGAACAACCAGTTTTCATGACTGAG...CCACCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR TCA 90 bp | CTTCCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGAGGTTCAATCTCTCCTaGAATTCCAACTTTACAGAG | + |
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Preference number: 4 (lower is better) Translates to: LPTNTPCHLVFIVVPRVWRFNLS*NSNFTE Trigger: CTCTGTAAAGTTGGAATTTCAGGAGAGATTGAACCT...CCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGGAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR CCA 90 bp | CTTCCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGCAAACATTATTTCTGTaGTCTTCTCTCGGGTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: LPTNTPCHLVFIVVPRVWQTLFL*SSLGSL Trigger: AAGAGACCCGAGAGAAGACCACAGAAATAATGTTTG...CCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGGAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR TCA 90 bp | CTTCCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGTTTCTTAGGAACTGCTaGCAATTCTTTTCTGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: LPTNTPCHLVFIVVPRVWFLRNC*QFFSVS Trigger: AGACACAGAAAAGAATTGTCAGCAGTTCCTAAGAAA...CCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGGAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR CCA 90 bp | CCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGTGGATTAGATCTTGCAGATaGTATGTTGAATTTTGGGTG | + |
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Preference number: 4 (lower is better) Translates to: PTNTPCHLVFIVVPRVWWIRSCR*YVEFWV Trigger: CACCCAAAATTCAACATACCATCTGCAAGATCTAAT...CCACCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS GCA 90 bp | CAGGACCAGCCCAGTGATACAGGCAGAAGCACACAAGGCTCCTACTaGGTGGTTGCAAAGATACAAGGCAGGCACGTTAAATTTCTCAAA | + |
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Preference number: 5 (lower is better) Translates to: QDQPSDTGRSTQGSY*VVAKIQGRHVKFLK Trigger: TTTGAGAAATTTAACGTGCCTGCCTTGTATCTTTGCAACCACGCAGTAGGAGCCTTGTGTGCTTCTGCCTGTATCACTGGGCTGGTCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS TCA 90 bp | GGATGTCATGACAGATCCACCAATCCAAGCCGAATAACATCTGTCTaGGGAAGCTGTGATCTTGATAGGGGTTCCCTCAAAAGCCAGATC | + |
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Preference number: 5 (lower is better) Translates to: GCHDRSTNPSRITSV*GSCDLDRGSLKSQI Trigger: GATCTGGCTTTTGAGGGAACCCCTATCAAGATCACAGCTTCCTCAGACAGATGTTATTCGGCTTGGATTGGTGGATCTGTCATGACATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR CAA 90 bp | CCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGTGGTCCACCACTGCTTTGTaGAGGATGCAGGGGAAGGTG | + |
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Preference number: 5 (lower is better) Translates to: PTNTPCHLVFIVVPRVWWSTTAL*RMQGKV Trigger: CACCTTCCCCTGCATCCTCAACAAAGCAGTGGTGGA...CCACCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS GCA 90 bp | GCACTGAGCTTCTTCTCCCACAAAGTACCTTTTCCGATTAGATCTTaGAGATGGTATGTTGAATTTTGGGTGCCCAACGACAGAGTTGAT | + |
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Preference number: 5 (lower is better) Translates to: ALSFFSHKVPFPIRS*RWYVEFWVPNDRVD Trigger: ATCAACTCTGTCGTTGGGCACCCAAAATTCAACATACCATCTGCAAGATCTAATCGGAAAAGGTACTTTGTGGGAGAAGAAGCTCAGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS CCA 90 bp | AGCTTCTTCTCCCACAAAGTACCTTTTCCGATTAGATCTTGCAGATaGTATGTTGAATTTTGGGTGCCCAACGACAGAGTTGATGACATG | + |
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Preference number: 5 (lower is better) Translates to: SFFSHKVPFPIRSCR*YVEFWVPNDRVDDM Trigger: CATGTCATCAACTCTGTCGTTGGGCACCCAAAATTCAACATACCATCTGCAAGATCTAATCGGAAAAGGTACTTTGTGGGAGAAGAAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS CCA 90 bp | AAATTTCTCAAACATTATTTCTGTGGTCTTCTCTCGGGTCTCTTGTaGGTTCAAGGAGGGCTCAGTCATGAAAACTGGTTGTTCATTGGG | + |
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Preference number: 5 (lower is better) Translates to: KFLKHYFCGLLSGLL*VQGGLSHENWLFIG Trigger: CCCAATGAACAACCAGTTTTCATGACTGAGCCCTCCTTGAACCCACAAGAGACCCGAGAGAAGACCACAGAAATAATGTTTGAGAAATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR CAA 90 bp | CCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGTGGAATGCCCCATACTCTTaGAAGTCCTCAGCAGTGACC | + |
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Preference number: 5 (lower is better) Translates to: PTNTPCHLVFIVVPRVWWNAPYS*KSSAVT Trigger: GGTCACTGCTGAGGACTTCAAAGAGTATGGGGCATT...CCACCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR CAA 90 bp | CCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGTGGCAGAGTCCAGAACCATaGTCAAAAATCACAGCTGGA | + |
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Preference number: 5 (lower is better) Translates to: PTNTPCHLVFIVVPRVWWQSPEP*SKITAG Trigger: TCCAGCTGTGATTTTTGACAATGGTTCTGGACTCTG...CCACCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR CAA 90 bp | CTTCCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGAAAACTGGTTGTTCATaGGGTTTCACTCCTAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: LPTNTPCHLVFIVVPRVWKTGCS*GFTPSS Trigger: GGAGCTAGGAGTGAAACCCAATGAACAACCAGTTTT...CCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGGAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS-3UTR CAA 90 bp | CTTCCTACTAATACTCCTTGTCATCTTGTATTTATAGTAGTTCCCAGAGTTTGGCAGTTCATGATGCTGTaGCAGACCATTTTTGAGATT | + |
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Preference number: 5 (lower is better) Translates to: LPTNTPCHLVFIVVPRVWQFMML*QTIFEI Trigger: AATCTCAAAAATGGTCTGCAACAGCATCATGAACTG...CCAAACTCTGGGAACTACTATAAATACAAGATGACAAGGAGTATTAGTAGGAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS GCA 72 bp | CCCAGTGATACAGGCAGAAGCACACAAGGCTCCTACTaGGTGGTTGCAAAGATACAAGGCAGGCACGTTAAA | + |
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Preference number: 6 (lower is better) Translates to: PSDTGRSTQGSY*VVAKIQGRHVK Trigger: TTTAACGTGCCTGCCTTGTATCTTTGCAACCACGCAGTAGGAGCCTTGTGTGCTTCTGCCTGTATCACTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS CCA 72 bp | CCTAGATGGTCAGGTGTAAAAAGAACCTCAGGCACCTaGCACAGGTGGTCACTCATCTGGATAGTATTCCCA | + |
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Preference number: 6 (lower is better) Translates to: PRWSGVKRTSGT*HRWSLIWIVFP Trigger: TGGGAATACTATCCAGATGAGTGACCACCTGTGCCAGGTGCCTGAGGTTCTTTTTACACCTGACCATCTAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS CCA 72 bp | GTGATACAGGCAGAAGCACACAAGGCTCCTACTGCGTaGTTGCAAAGATACAAGGCAGGCACGTTAAATTTC | + |
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Preference number: 6 (lower is better) Translates to: VIQAEAHKAPTA*LQRYKAGTLNF Trigger: GAAATTTAACGTGCCTGCCTTGTATCTTTGCAACCACGCAGTAGGAGCCTTGTGTGCTTCTGCCTGTATCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS TCA 72 bp | AAAGCCAGATCTTCTAGTTCTTTCAGGAGTCTATCCTaGAGCCCGGGAAACATTGTGGTACCTCCAGAAAGC | + |
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Preference number: 6 (lower is better) Translates to: KARSSSSFRSLS*SPGNIVVPPES Trigger: GCTTTCTGGAGGTACCACAATGTTTCCCGGGCTTCAGGATAGACTCCTGAAAGAACTAGAAGATCTGGCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS CAA 72 bp | CTCAAACATTATTTCTGTGGTCTTCTCTCGGGTCTCTaGTGGGTTCAAGGAGGGCTCAGTCATGAAAACTGG | + |
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Preference number: 6 (lower is better) Translates to: LKHYFCGLLSGL*WVQGGLSHENW Trigger: CCAGTTTTCATGACTGAGCCCTCCTTGAACCCACAAGAGACCCGAGAGAAGACCACAGAAATAATGTTTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS CAA 90 bp | AGCCCAGTGATACAGGCAGAAGCACACAAGGCTCCTACTGCGTGGTaGCAAAGATACAAGGCAGGCACGTTAAATTTCTCAAACATTATT | + |
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Preference number: 6 (lower is better) Translates to: SPVIQAEAHKAPTAW*QRYKAGTLNFSNII Trigger: AATAATGTTTGAGAAATTTAACGTGCCTGCCTTGTATCTTTGCAACCACGCAGTAGGAGCCTTGTGTGCTTCTGCCTGTATCACTGGGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS CCA 72 bp | AAACATTATTTCTGTGGTCTTCTCTCGGGTCTCTTGTaGGTTCAAGGAGGGCTCAGTCATGAAAACTGGTTG | + |
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Preference number: 6 (lower is better) Translates to: KHYFCGLLSGLL*VQGGLSHENWL Trigger: CAACCAGTTTTCATGACTGAGCCCTCCTTGAACCCACAAGAGACCCGAGAGAAGACCACAGAAATAATGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS GCA 72 bp | TTCTTCTCCCACAAAGTACCTTTTCCGATTAGATCTTaGAGATGGTATGTTGAATTTTGGGTGCCCAACGAC | + |
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Preference number: 6 (lower is better) Translates to: FFSHKVPFPIRS*RWYVEFWVPND Trigger: GTCGTTGGGCACCCAAAATTCAACATACCATCTGCAAGATCTAATCGGAAAAGGTACTTTGTGGGAGAAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS CCA 72 bp | TCCCACAAAGTACCTTTTCCGATTAGATCTTGCAGATaGTATGTTGAATTTTGGGTGCCCAACGACAGAGTT | + |
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Preference number: 6 (lower is better) Translates to: SHKVPFPIRSCR*YVEFWVPNDRV Trigger: AACTCTGTCGTTGGGCACCCAAAATTCAACATACCATCTGCAAGATCTAATCGGAAAAGGTACTTTGTGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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| CDS CAA 90 bp | GGTTCAATCTCTCCTGAAATTCCAACTTTACAGAGTCCAGAACCATaGTCAAAAATCACAGCTGGATTATCTAATCTAGCTGGATCAAGC | + |
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Preference number: 6 (lower is better) Translates to: GSISPEIPTLQSPEP*SKITAGLSNLAGSS Trigger: GCTTGATCCAGCTAGATTAGATAATCCAGCTGTGATTTTTGACAATGGTTCTGGACTCTGTAAAGTTGGAATTTCAGGAGAGATTGAACC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059466.3 |
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