Pregenerated sensors for ACTR6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019948Ensembl transcript IDs: ENSMUST00000020109.5, ENSMUST00000220388.2
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | GCTCAGAAGGGTTATCTCGGAAATACCTGTGTGCGCTaGGAGCACCGGCATTTACTCTTAATACTGCTTGGA | + |
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Preference number: 3 (lower is better) Translates to: AQKGYLGNTCVR*EHRHLLLILLG Trigger: TCCAAGCAGTATTAAGAGTAAATGCCGGTGCTCTCAGCGCACACAGGTATTTCCGAGATAACCCTTCTGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220388.2 |
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| 3UTR TCA 72 bp | AGAGCACCGGCATTTACTCTTAATACTGCTTGGAACTaGTATTCTTCGAATAGGATTTCATTCATTGATTCT | + |
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Preference number: 3 (lower is better) Translates to: RAPAFTLNTAWN*YSSNRISFIDS Trigger: AGAATCAATGAATGAAATCCTATTCGAAGAATATCAGTTCCAAGCAGTATTAAGAGTAAATGCCGGTGCTCT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220388.2 |
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| CDS-3UTR CCA 90 bp | GATGCAGCACAGCTCAGAAGGGTTATCTCGGAAATACCTGTGTGCGCTGAGAGCTCCCAAACTTGTCGCTaGACATCCCAATTCACCAAG | + |
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Preference number: 4 (lower is better) Translates to: DAAQLRRVISEIPVCAESSQTCR*TSQFTK Trigger: CTTGGTGAATTGGGATGTCCAGCGACAAGTTTGGGA...GCTCTCAGCGCACACAGGTATTTCCGAGATAACCCTTCTGAGCTGTGCTGCATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220388.2 |
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| CDS-3UTR TCA 90 bp | CGGAAATACCTGTGTGCGCTGAGAGCACCGGCATTTACTCTTAATACTGCTTGGGTTTTGGATCTGAACTaGCAATTGGGAATAACCGAG | + |
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Preference number: 4 (lower is better) Translates to: RKYLCALRAPAFTLNTAWVLDLN*QLGITE Trigger: CTCGGTTATTCCCAATTGTCAGTTCAGATCCAAAAC...CCAAGCAGTATTAAGAGTAAATGCCGGTGCTCTCAGCGCACACAGGTATTTCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220388.2 |
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| CDS-3UTR TCA 90 bp | AGAAGCCTGTGCATACCAGCCATGACTCGGAATATTTACATAAGTAAACTTTATCTTCCCAGGAGTAAGTaGTGGGGTTCTCAGGCAACA | + |
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Preference number: 4 (lower is better) Translates to: RSLCIPAMTRNIYISKLYLPRSK*WGSQAT Trigger: TGTTGCCTGAGAACCCCATCACTTACTCCTGGGAAG...ATAAAGTTTACTTATGTAAATATTCCGAGTCATGGCTGGTATGCACAGGCTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS-3UTR TCA 90 bp | AGCCTGTGCATACCAGCCATGACTCGGAATATTTACATAAGTAAACTTTATCTTAGTAAACACGCTCTCTaGATCCGGGGAAAAGGGAAT | + |
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Preference number: 4 (lower is better) Translates to: SLCIPAMTRNIYISKLYLSKHAL*IRGKGN Trigger: ATTCCCTTTTCCCCGGATTCAGAGAGCGTGTTTACT...AAGATAAAGTTTACTTATGTAAATATTCCGAGTCATGGCTGGTATGCACAGGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS-3UTR CCA 90 bp | TTTCTTTTTGCTTCTACAGTAAGGAACAATGTGCGTGAAGGAATAGCCACTGTCGGCTGTAACCGATTTTaGCGTTGTAAGCTCCATTAT | + |
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Preference number: 4 (lower is better) Translates to: FLFASTVRNNVREGIATVGCNRF*RCKLHY Trigger: ATAATGGAGCTTACAACGCCAAAATCGGTTACAGCC...GACAGTGGCTATTCCTTCACGCACATTGTTCCTTACTGTAGAAGCAAAAAGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000220388.2 |
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| CDS-3UTR CCA 90 bp | AGCCTGTGCATACCAGCCATGACTCGGAATATTTACATAAGTAAACTTTATCTTTCCCAAACTTGTCGCTaGACATCCCAATTCACCAAG | + |
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Preference number: 4 (lower is better) Translates to: SLCIPAMTRNIYISKLYLSQTCR*TSQFTK Trigger: CTTGGTGAATTGGGATGTCCAGCGACAAGTTTGGGA...AAGATAAAGTTTACTTATGTAAATATTCCGAGTCATGGCTGGTATGCACAGGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS-3UTR CCA 90 bp | AGCCTGTGCATACCAGCCATGACTCGGAATATTTACATAAGTAAACTTTATCTTGCACCATCTCTTCTCTaGGCTTACAGAAGCCCTTTT | + |
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Preference number: 4 (lower is better) Translates to: SLCIPAMTRNIYISKLYLAPSLL*AYRSPF Trigger: AAAAGGGCTTCTGTAAGCCCAGAGAAGAGATGGTGC...AAGATAAAGTTTACTTATGTAAATATTCCGAGTCATGGCTGGTATGCACAGGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS-3UTR TCA 90 bp | AGAAGCCTGTGCATACCAGCCATGACTCGGAATATTTACATAAGTAAACTTTATGCTGCCTGTAGGATATaGTCTCTTTTAGATGGTTCG | + |
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Preference number: 4 (lower is better) Translates to: RSLCIPAMTRNIYISKLYAACRI*SLLDGS Trigger: CGAACCATCTAAAAGAGATCATATCCTACAGGCAGC...ATAAAGTTTACTTATGTAAATATTCCGAGTCATGGCTGGTATGCACAGGCTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS-3UTR TCA 90 bp | AGCCTGTGCATACCAGCCATGACTCGGAATATTTACATAAGTAAACTTTATCTTCAAACACCGAACTTCTaGGTAAACACGCTCTCTGAA | + |
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Preference number: 4 (lower is better) Translates to: SLCIPAMTRNIYISKLYLQTPNF*VNTLSE Trigger: TTCAGAGAGCGTGTTTACTCAGAAGTTCGGTGTTTG...AAGATAAAGTTTACTTATGTAAATATTCCGAGTCATGGCTGGTATGCACAGGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS-3UTR CCA 90 bp | AGCCTGTGCATACCAGCCATGACTCGGAATATTTACATAAGTAAACTTTATCTTCAGCAAATCTCTCGTTaGCAAGGCGAAGAATCTGTT | + |
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Preference number: 4 (lower is better) Translates to: SLCIPAMTRNIYISKLYLQQISR*QGEESV Trigger: AACAGATTCTTCGCCTTGCCAACGAGAGATTTGCTG...AAGATAAAGTTTACTTATGTAAATATTCCGAGTCATGGCTGGTATGCACAGGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS-3UTR CCA 90 bp | AGAAGCCTGTGCATACCAGCCATGACTCGGAATATTTACATAAGTAAACTTTATATAGACAATGGCTTCTaGGATCCCCATCTCCTGAAT | + |
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Preference number: 4 (lower is better) Translates to: RSLCIPAMTRNIYISKLYIDNGF*DPHLLN Trigger: ATTCAGGAGATGGGGATCCCAGAAGCCATTGTCTAT...ATAAAGTTTACTTATGTAAATATTCCGAGTCATGGCTGGTATGCACAGGCTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS-3UTR CCA 90 bp | AGAAGCCTGTGCATACCAGCCATGACTCGGAATATTTACATAAGTAAACTTTATGGATTGAATAGACAATaGCTTCTGGGATCCCCATCT | + |
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Preference number: 4 (lower is better) Translates to: RSLCIPAMTRNIYISKLYGLNRQ*LLGSPS Trigger: AGATGGGGATCCCAGAAGCCATTGTCTATTCAATCC...ATAAAGTTTACTTATGTAAATATTCCGAGTCATGGCTGGTATGCACAGGCTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS-3UTR TCA 90 bp | AGCCTGTGCATACCAGCCATGACTCGGAATATTTACATAAGTAAACTTTATCTTGTTTTGGATCTGAACTaGCAATTGGGAATAACCGAG | + |
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Preference number: 4 (lower is better) Translates to: SLCIPAMTRNIYISKLYLVLDLN*QLGITE Trigger: CTCGGTTATTCCCAATTGTCAGTTCAGATCCAAAAC...AAGATAAAGTTTACTTATGTAAATATTCCGAGTCATGGCTGGTATGCACAGGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS-3UTR CCA 90 bp | AGCCTGTGCATACCAGCCATGACTCGGAATATTTACATAAGTAAACTTTATCTTGGCTGTAACCGATTTTaGCGTTGTAAGCTCCATTAT | + |
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Preference number: 4 (lower is better) Translates to: SLCIPAMTRNIYISKLYLGCNRF*RCKLHY Trigger: ATAATGGAGCTTACAACGCCAAAATCGGTTACAGCC...AAGATAAAGTTTACTTATGTAAATATTCCGAGTCATGGCTGGTATGCACAGGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS-3UTR GCA 90 bp | TTTCTTTTTGCTTCTACAGTAAGGAACAATGTGCGTGAAGGAATAGCCACTGTCAAATGTTTTAAGACGTaGTGTTTTGGATCTGAACTG | + |
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Preference number: 4 (lower is better) Translates to: FLFASTVRNNVREGIATVKCFKT*CFGSEL Trigger: CAGTTCAGATCCAAAACAGCACGTCTTAAAACATTT...GACAGTGGCTATTCCTTCACGCACATTGTTCCTTACTGTAGAAGCAAAAAGAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000220388.2 |
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| CDS-3UTR CCA 90 bp | AGCCTGTGCATACCAGCCATGACTCGGAATATTTACATAAGTAAACTTTATCTTGTTAAAGAGTATTTCTaGCACAGCAAATCTCTCGTT | + |
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Preference number: 4 (lower is better) Translates to: SLCIPAMTRNIYISKLYLVKEYF*HSKSLV Trigger: AACGAGAGATTTGCTGTGCCAGAAATACTCTTTAAC...AAGATAAAGTTTACTTATGTAAATATTCCGAGTCATGGCTGGTATGCACAGGCT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS-3UTR GCA 90 bp | AGAAGCCTGTGCATACCAGCCATGACTCGGAATATTTACATAAGTAAACTTTATAAATGTTTTAAGACGTaGTGTTTTGGATCTGAACTG | + |
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Preference number: 4 (lower is better) Translates to: RSLCIPAMTRNIYISKLYKCFKT*CFGSEL Trigger: CAGTTCAGATCCAAAACAGCACGTCTTAAAACATTT...ATAAAGTTTACTTATGTAAATATTCCGAGTCATGGCTGGTATGCACAGGCTTCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS-3UTR CCA 90 bp | AGAAGCCTGTGCATACCAGCCATGACTCGGAATATTTACATAAGTAAACTTTATATGATCTCTTTTAGATaGTTCGTTAAGAGCTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: RSLCIPAMTRNIYISKLYMISFR*FVKSFP Trigger: TGGAAAGCTCTTAACGAACCATCTAAAAGAGATCAT...ATAAAGTTTACTTATGTAAATATTCCGAGTCATGGCTGGTATGCACAGGCTTCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS CCA 90 bp | CCCCATCTCCTGAATGCCGATGTCAGAGGGGTTAAAGAGTATTTCTaGCACAGCAAATCTCTCGTTGGCAAGGCGAAGAATCTGTTCCCC | + |
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Preference number: 5 (lower is better) Translates to: PHLLNADVRGVKEYF*HSKSLVGKAKNLFP Trigger: GGGGAACAGATTCTTCGCCTTGCCAACGAGAGATTTGCTGTGCCAGAAATACTCTTTAACCCCTCTGACATCGGCATTCAGGAGATGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS TCA 90 bp | CACGACAGAAACGTCATAGTCTGTTGGCGTCAAACACCGAACTTCTaGGTAAACACGCTCTCTGAATCCGGGGAAAAGGGAATTTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: HDRNVIVCWRQTPNF*VNTLSESGEKGISS Trigger: GGAGGAAATTCCCTTTTCCCCGGATTCAGAGAGCGTGTTTACTCAGAAGTTCGGTGTTTGACGCCAACAGACTATGACGTTTCTGTCGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS TCA 90 bp | AGTCATCGTTTTCAGATATCAACTTCCCACCTTCCCAGGAGTAAGTaGTGGGGTTCTCAGGCAACACGACAGAAACGTCATAGTCTGTTG | + |
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Preference number: 5 (lower is better) Translates to: SHRFQISTSHLPRSK*WGSQATRQKRHSLL Trigger: CAACAGACTATGACGTTTCTGTCGTGTTGCCTGAGAACCCCATCACTTACTCCTGGGAAGGTGGGAAGTTGATATCTGAAAACGATGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS-3UTR CAA 90 bp | CTTTTTGCTTCTACAGTAAGGAACAATGTGCGTGAAGGAATAGCCACTGTCGACAAGATAATCCCAAACTaGTCGCTGGACATCCCAATT | + |
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Preference number: 5 (lower is better) Translates to: LFASTVRNNVREGIATVDKIIPN*SLDIPI Trigger: AATTGGGATGTCCAGCGACAAGTTTGGGATTATCTT...GTCGACAGTGGCTATTCCTTCACGCACATTGTTCCTTACTGTAGAAGCAAAAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000220388.2 |
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| CDS-3UTR CAA 90 bp | AGAAGCCTGTGCATACCAGCCATGACTCGGAATATTTACATAAGTAAACTTTATACAGCAAATCTCTCGTaGGCAAGGCGAAGAATCTGT | + |
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Preference number: 5 (lower is better) Translates to: RSLCIPAMTRNIYISKLYTANLS*ARRRIC Trigger: ACAGATTCTTCGCCTTGCCAACGAGAGATTTGCTGT...ATAAAGTTTACTTATGTAAATATTCCGAGTCATGGCTGGTATGCACAGGCTTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS-3UTR CAA 90 bp | AGCCTGTGCATACCAGCCATGACTCGGAATATTTACATAAGTAAACTTTATCTTAAGATAATCCCAAACTaGTCGCTGGACATCCCAATT | + |
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Preference number: 5 (lower is better) Translates to: SLCIPAMTRNIYISKLYLKIIPN*SLDIPI Trigger: AATTGGGATGTCCAGCGACAAGTTTGGGATTATCTT...AAGATAAAGTTTACTTATGTAAATATTCCGAGTCATGGCTGGTATGCACAGGCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS-3UTR CAA 90 bp | AGCCTGTGCATACCAGCCATGACTCGGAATATTTACATAAGTAAACTTTATCTTTCTTCTCCTTTTAACTaGGCAATGTCCATGTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: SLCIPAMTRNIYISKLYLSSPFN*AMSMSL Trigger: CAGAGACATGGACATTGCCAAGTTAAAAGGAGAAGA...AAGATAAAGTTTACTTATGTAAATATTCCGAGTCATGGCTGGTATGCACAGGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS TCA 72 bp | AACGTCATAGTCTGTTGGCGTCAAACACCGAACTTCTaGGTAAACACGCTCTCTGAATCCGGGGAAAAGGGA | + |
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Preference number: 6 (lower is better) Translates to: NVIVCWRQTPNF*VNTLSESGEKG Trigger: TCCCTTTTCCCCGGATTCAGAGAGCGTGTTTACTCAGAAGTTCGGTGTTTGACGCCAACAGACTATGACGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS CAA 72 bp | GGTTCTCAGGCAACACGACAGAAACGTCATAGTCTGTaGGCGTCAAACACCGAACTTCTGAGTAAACACGCT | + |
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Preference number: 6 (lower is better) Translates to: GSQATRQKRHSL*ASNTELLSKHA Trigger: AGCGTGTTTACTCAGAAGTTCGGTGTTTGACGCCAACAGACTATGACGTTTCTGTCGTGTTGCCTGAGAACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS TCA 72 bp | TTTCAGATATCAACTTCCCACCTTCCCAGGAGTAAGTaGTGGGGTTCTCAGGCAACACGACAGAAACGTCAT | + |
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Preference number: 6 (lower is better) Translates to: FQISTSHLPRSK*WGSQATRQKRH Trigger: ATGACGTTTCTGTCGTGTTGCCTGAGAACCCCATCACTTACTCCTGGGAAGGTGGGAAGTTGATATCTGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS CCA 72 bp | CTGAATGCCGATGTCAGAGGGGTTAAAGAGTATTTCTaGCACAGCAAATCTCTCGTTGGCAAGGCGAAGAAT | + |
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Preference number: 6 (lower is better) Translates to: LNADVRGVKEYF*HSKSLVGKAKN Trigger: ATTCTTCGCCTTGCCAACGAGAGATTTGCTGTGCCAGAAATACTCTTTAACCCCTCTGACATCGGCATTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS TCA 72 bp | GAGTTTCATCCATCACATGCAGCTGCCTGTAGGATATaGTCTCTTTTAGATGGTTCGTTAAGAGCTTTCCAC | + |
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Preference number: 6 (lower is better) Translates to: EFHPSHAAACRI*SLLDGSLRAFH Trigger: GTGGAAAGCTCTTAACGAACCATCTAAAAGAGATCATATCCTACAGGCAGCTGCATGTGATGGATGAAACTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS TCA 72 bp | GTAAATGTTTTAAGACGTGCTGTTTTGGATCTGAACTaGCAATTGGGAATAACCGAGACACTGTCATGGCTG | + |
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Preference number: 6 (lower is better) Translates to: VNVLRRAVLDLN*QLGITETLSWL Trigger: CAGCCATGACAGTGTCTCGGTTATTCCCAATTGTCAGTTCAGATCCAAAACAGCACGTCTTAAAACATTTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020109.5 ENSMUST00000220388.2 |
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| CDS CAA 90 bp | GTCTCTGTAAAAATCCTGAGACACGTAGCATACGTCTTCTTTCACTaGATTAATCACATGAGTTTCATCCATCACATGCAGCTGCCTGTA | + |
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Preference number: 6 (lower is better) Translates to: VSVKILRHVAYVFFH*INHMSFIHHMQLPV Trigger: TACAGGCAGCTGCATGTGATGGATGAAACTCATGTGATTAATCAAGTGAAAGAAGACGTATGCTACGTGTCTCAGGATTTTTACAGAGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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| CDS CAA 72 bp | AAAATCCTGAGACACGTAGCATACGTCTTCTTTCACTaGATTAATCACATGAGTTTCATCCATCACATGCAG | + |
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Preference number: 6 (lower is better) Translates to: KILRHVAYVFFH*INHMSFIHHMQ Trigger: CTGCATGTGATGGATGAAACTCATGTGATTAATCAAGTGAAAGAAGACGTATGCTACGTGTCTCAGGATTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020109.5 |
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