Pregenerated sensors for ACTR3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026341Ensembl transcript IDs: ENSMUST00000027579.17, ENSMUST00000178474.8, ENSMUST00000191578.7
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGAGAACCGTTGGGCTGGGGAGGGGTGGAGCAGCTCGAGATAACTaGAACCCAGAGTGTGCGCCAAGTCCCATGAGGCTGCTTGTTGAA | + |
|
Preference number: 1 (lower is better) Translates to: ERTVGLGRGGAARDN*NPECAPSPMRLLVE Trigger: TTCAACAAGCAGCCTCATGGGACTTGGCGCACACTCTGGGTTCCAGTTATCTCGAGCTGCTCCACCCCTCCCCAGCCCAACGGTTCTCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| 3UTR GCA 90 bp | AGGCATCGGCTAACCCAGGAGACTAGCTTCTTAGATCCAAGCATTTaGAGAGAGAACCGTTGGGCTGGGGAGGGGTGGAGCAGCTCGAGA | + |
|
Preference number: 1 (lower is better) Translates to: RHRLTQETSFLDPSI*RENRWAGEGWSSSR Trigger: TCTCGAGCTGCTCCACCCCTCCCCAGCCCAACGGTTCTCTCTGCAAATGCTTGGATCTAAGAAGCTAGTCTCCTGGGTTAGCCGATGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| 3UTR-3UTR GCA 90 bp | ATTAGCAAACTCTGGATGGAAAAAGATCTCGGGTCCCAGGAATCGCTCATAGCCGTAGCGTTCCTTCACTaGTTTCGCAGTTTCCAAGGA | + |
|
Preference number: 2 (lower is better) Translates to: ISKLWMEKDLGSQESLIAVAFLH*FRSFQG Trigger: TCCTTGGAAACTGCGAAAGCAGTGAAGGAACGCTAC...GGCTATGAGCGATTCCTGGGACCCGAGATCTTTTTCCATCCAGAGTTTGCTAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000191578.7 |
||
| 3UTR-3UTR CCA 90 bp | TTGGTTAAAAACCTCAGAACCATCCATTCAGACAAAAACAGGTCATCAGAAAGAAGAGAACCGTTGGGCTaGGGAGGGGTGGAGCAGCTC | + |
|
Preference number: 2 (lower is better) Translates to: LVKNLRTIHSDKNRSSERREPLG*GGVEQL Trigger: GAGCTGCTCCACCCCTCCCCAGCCCAACGGTTCTCT...TCTTTCTGATGACCTGTTTTTGTCTGAATGGATGGTTCTGAGGTTTTTAACCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| 3UTR-3UTR CCA 90 bp | TTGGTTAAAAACCTCAGAACCATCCATTCAGACAAAAACAGGTCATCAGAAAGATGCAGAGAGAACCGTTaGGCTGGGGAGGGGTGGAGC | + |
|
Preference number: 2 (lower is better) Translates to: LVKNLRTIHSDKNRSSERCRENR*AGEGWS Trigger: GCTCCACCCCTCCCCAGCCCAACGGTTCTCTCTGCA...TCTTTCTGATGACCTGTTTTTGTCTGAATGGATGGTTCTGAGGTTTTTAACCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| 3UTR-3UTR CCA 90 bp | CAGTGCCCAATCAGGCATTACAGAGCTCTCTACACACCCACTGAGCCCAGCACACTGTATGATCATGTTTaGTTAAAAACCTCAGAACCA | + |
|
Preference number: 2 (lower is better) Translates to: QCPIRHYRALYTPTEPSTLYDHV*LKTSEP Trigger: TGGTTCTGAGGTTTTTAACCAAACATGATCATACAG...TGTGCTGGGCTCAGTGGGTGTGTAGAGAGCTCTGTAATGCCTGATTGGGCACTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| 3UTR-3UTR TCA 90 bp | CATGTTTGGTTAAAAACCTCAGAACCATCCATTCAGACAAAAACAGGTCATCAGGCCACAGGAATGACATaGGTGACTCCGTCTCCACTG | + |
|
Preference number: 2 (lower is better) Translates to: HVWLKTSEPSIQTKTGHQATGMT*VTPSPL Trigger: CAGTGGAGACGGAGTCACTCATGTCATTCCTGTGGC...CTGATGACCTGTTTTTGTCTGAATGGATGGTTCTGAGGTTTTTAACCAAACATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000191578.7 |
||
| 3UTR-3UTR GCA 90 bp | AGCTTGCTATCCAACCGCTGTGCTTTTAAAGAGCTACTGCAGAATCTGAAGAAACTACCCACTCAGCAGTaGCCAATCAGGCATTACAGA | + |
|
Preference number: 2 (lower is better) Translates to: SLLSNRCAFKELLQNLKKLPTQQ*PIRHYR Trigger: TCTGTAATGCCTGATTGGGCACTGCTGAGTGGGTAG...TTTCTTCAGATTCTGCAGTAGCTCTTTAAAAGCACAGCGGTTGGATAGCAAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| 3UTR-3UTR CCA 90 bp | TTGGTTAAAAACCTCAGAACCATCCATTCAGACAAAAACAGGTCATCAGAAAGAGGTAGAACTCAGGCGTaGAAGCCAGCATTGACCCTC | + |
|
Preference number: 2 (lower is better) Translates to: LVKNLRTIHSDKNRSSERGRTQA*KPALTL Trigger: GAGGGTCAATGCTGGCTTCCACGCCTGAGTTCTACC...TCTTTCTGATGACCTGTTTTTGTCTGAATGGATGGTTCTGAGGTTTTTAACCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000191578.7 |
||
| 3UTR-3UTR TCA 90 bp | CATGTTTGGTTAAAAACCTCAGAACCATCCATTCAGACAAAAACAGGTCATCAGCATGAGGCTGCTTGTTaGACTCATCTTTTCCTTGGT | + |
|
Preference number: 2 (lower is better) Translates to: HVWLKTSEPSIQTKTGHQHEAAC*THLFLG Trigger: ACCAAGGAAAAGATGAGTTCAACAAGCAGCCTCATG...CTGATGACCTGTTTTTGTCTGAATGGATGGTTCTGAGGTTTTTAACCAAACATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| 3UTR-3UTR TCA 90 bp | TTGGTTAAAAACCTCAGAACCATCCATTCAGACAAAAACAGGTCATCAGAAAGAAGAAAACTCTTTCTTTaGGATGGCGTTGACTCCGGT | + |
|
Preference number: 2 (lower is better) Translates to: LVKNLRTIHSDKNRSSERRKLFL*DGVDSG Trigger: ACCGGAGTCAACGCCATCTCAAAGAAAGAGTTTTCT...TCTTTCTGATGACCTGTTTTTGTCTGAATGGATGGTTCTGAGGTTTTTAACCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000191578.7 |
||
| 3UTR-3UTR CCA 90 bp | CATGTTTGGTTAAAAACCTCAGAACCATCCATTCAGACAAAAACAGGTCATCAGTGGATTAGCAAACTCTaGATGGAAAAAGATCTCGGG | + |
|
Preference number: 2 (lower is better) Translates to: HVWLKTSEPSIQTKTGHQWISKL*MEKDLG Trigger: CCCGAGATCTTTTTCCATCCAGAGTTTGCTAATCCA...CTGATGACCTGTTTTTGTCTGAATGGATGGTTCTGAGGTTTTTAACCAAACATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000191578.7 |
||
| 3UTR-3UTR CCA 90 bp | CATGTTTGGTTAAAAACCTCAGAACCATCCATTCAGACAAAAACAGGTCATCAGGCATACCGCTGCATATaGTGTGTAATAACTTGTACA | + |
|
Preference number: 2 (lower is better) Translates to: HVWLKTSEPSIQTKTGHQAYRCI*CVITCT Trigger: TGTACAAGTTATTACACACCATATGCAGCGGTATGC...CTGATGACCTGTTTTTGTCTGAATGGATGGTTCTGAGGTTTTTAACCAAACATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000191578.7 |
||
| 3UTR-3UTR TCA 90 bp | TTGGTTAAAAACCTCAGAACCATCCATTCAGACAAAAACAGGTCATCAGAAAGATCAATGGGGCAATTCTaGATGACTTCATCTACAACT | + |
|
Preference number: 2 (lower is better) Translates to: LVKNLRTIHSDKNRSSERSMGQF*MTSSTT Trigger: AGTTGTAGATGAAGTCATTCAGAATTGCCCCATTGA...TCTTTCTGATGACCTGTTTTTGTCTGAATGGATGGTTCTGAGGTTTTTAACCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000191578.7 |
||
| 3UTR-3UTR CCA 90 bp | ACTCATCTTTTCCTTGGTCACATTGTTTCCCTCCAATACTACAGTTTTTCTTTGCTGTATGATCATGTTTaGTTAAAAACCTCAGAACCA | + |
|
Preference number: 2 (lower is better) Translates to: THLFLGHIVSLQYYSFSLLYDHV*LKTSEP Trigger: TGGTTCTGAGGTTTTTAACCAAACATGATCATACAG...CAAAGAAAAACTGTAGTATTGGAGGGAAACAATGTGACCAAGGAAAAGATGAGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| 3UTR CCA 72 bp | GTTGGGCTGGGGAGGGGTGGAGCAGCTCGAGATAACTaGAACCCAGAGTGTGCGCCAAGTCCCATGAGGCTG | + |
|
Preference number: 3 (lower is better) Translates to: VGLGRGGAARDN*NPECAPSPMRL Trigger: CAGCCTCATGGGACTTGGCGCACACTCTGGGTTCCAGTTATCTCGAGCTGCTCCACCCCTCCCCAGCCCAAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| 3UTR GCA 72 bp | CTAACCCAGGAGACTAGCTTCTTAGATCCAAGCATTTaGAGAGAGAACCGTTGGGCTGGGGAGGGGTGGAGC | + |
|
Preference number: 3 (lower is better) Translates to: LTQETSFLDPSI*RENRWAGEGWS Trigger: GCTCCACCCCTCCCCAGCCCAACGGTTCTCTCTGCAAATGCTTGGATCTAAGAAGCTAGTCTCCTGGGTTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| 3UTR-3UTR CAA 90 bp | GATCCAAGCATTTGCAGAGAGAACCGTTGGGCTGGGGAGGGGTGGAGCAGCTCGGAACTCATCTTTTCCTaGGTCACATTGTTTCCCTCC | + |
|
Preference number: 3 (lower is better) Translates to: DPSICRENRWAGEGWSSSELIFS*VTLFPS Trigger: GGAGGGAAACAATGTGACCAAGGAAAAGATGAGTTC...CGAGCTGCTCCACCCCTCCCCAGCCCAACGGTTCTCTCTGCAAATGCTTGGATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| 3UTR TCA 72 bp | CCCAGAGTGTGCGCCAAGTCCCATGAGGCTGCTTGTTaGACTCATCTTTTCCTTGGTCACATTGTTTCCCTC | + |
|
Preference number: 3 (lower is better) Translates to: PRVCAKSHEAAC*THLFLGHIVSL Trigger: GAGGGAAACAATGTGACCAAGGAAAAGATGAGTTCAACAAGCAGCCTCATGGGACTTGGCGCACACTCTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| 3UTR TCA 72 bp | GAGATAACTGGAACCCAGAGTGTGCGCCAAGTCCCATaGGGCTGCTTGTTGAACTCATCTTTTCCTTGGTCA | + |
|
Preference number: 3 (lower is better) Translates to: EITGTQSVRQVP*GCLLNSSFPWS Trigger: TGACCAAGGAAAAGATGAGTTCAACAAGCAGCCTCATGGGACTTGGCGCACACTCTGGGTTCCAGTTATCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| 3UTR-3UTR CAA 90 bp | ATTAGCAAACTCTGGATGGAAAAAGATCTCGGGTCCCAGGAATCGCTCATAGCCTTCTTTGAGATGGCGTaGACTCCGGTGTACTGTTTG | + |
|
Preference number: 3 (lower is better) Translates to: ISKLWMEKDLGSQESLIAFFEMA*TPVYCL Trigger: CAAACAGTACACCGGAGTCAACGCCATCTCAAAGAA...GGCTATGAGCGATTCCTGGGACCCGAGATCTTTTTCCATCCAGAGTTTGCTAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000191578.7 |
||
| 3UTR-3UTR CAA 90 bp | CATGTTTGGTTAAAAACCTCAGAACCATCCATTCAGACAAAAACAGGTCATCAGACTCCGGTGTACTGTTaGATCCACTTTGACCCATCG | + |
|
Preference number: 3 (lower is better) Translates to: HVWLKTSEPSIQTKTGHQTPVYC*IHFDPS Trigger: CGATGGGTCAAAGTGGATCAAACAGTACACCGGAGT...CTGATGACCTGTTTTTGTCTGAATGGATGGTTCTGAGGTTTTTAACCAAACATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000191578.7 |
||
| CDS-3UTR CCA 90 bp | TTGGGCTGGGGAGGGGTGGAGCAGCTCGAGATAACTGGAACCCAGAGTGTGCGCACCCTCCTCTGGGCTTaGTCACCCACTTTTGCAGAC | + |
|
Preference number: 4 (lower is better) Translates to: LGWGGVEQLEITGTQSVRTLLWA*SPTFAD Trigger: GTCTGCAAAAGTGGGTGACCAAGCCCAGAGGAGGGT...GCGCACACTCTGGGTTCCAGTTATCTCGAGCTGCTCCACCCCTCCCCAGCCCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CCA 90 bp | TTGGGCTGGGGAGGGGTGGAGCAGCTCGAGATAACTGGAACCCAGAGTGTGCGCGGTAGAACTCAGGCGTaGAAGCCAGCATTGACCCTC | + |
|
Preference number: 4 (lower is better) Translates to: LGWGGVEQLEITGTQSVRGRTQA*KPALTL Trigger: GAGGGTCAATGCTGGCTTCCACGCCTGAGTTCTACC...GCGCACACTCTGGGTTCCAGTTATCTCGAGCTGCTCCACCCCTCCCCAGCCCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR TCA 90 bp | TCAGGCACTACCCACTCAGCAGTGCCCAATCAGGCATTACAGAGCTCTCTACACGCCACAGGAATGACATaGGTGACTCCGTCTCCACTG | + |
|
Preference number: 4 (lower is better) Translates to: SGTTHSAVPNQALQSSLHATGMT*VTPSPL Trigger: CAGTGGAGACGGAGTCACTCATGTCATTCCTGTGGC...GTGTAGAGAGCTCTGTAATGCCTGATTGGGCACTGCTGAGTGGGTAGTGCCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CCA 90 bp | TTGGGCTGGGGAGGGGTGGAGCAGCTCGAGATAACTGGAACCCAGAGTGTGCGCTATACCATGGCGAATTaGCCACTTTGTTGCATATGT | + |
|
Preference number: 4 (lower is better) Translates to: LGWGGVEQLEITGTQSVRYTMAN*PLCCIC Trigger: ACATATGCAACAAAGTGGCCAATTCGCCATGGTATA...GCGCACACTCTGGGTTCCAGTTATCTCGAGCTGCTCCACCCCTCCCCAGCCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR TCA 90 bp | GATCCAAGCATTTGCAGAGAGAACCGTTGGGCTGGGGAGGGGTGGAGCAGCTCGTCAATGGGGCAATTCTaGATGACTTCATCTACAACT | + |
|
Preference number: 4 (lower is better) Translates to: DPSICRENRWAGEGWSSSSMGQF*MTSSTT Trigger: AGTTGTAGATGAAGTCATTCAGAATTGCCCCATTGA...CGAGCTGCTCCACCCCTCCCCAGCCCAACGGTTCTCTCTGCAAATGCTTGGATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR GCA 90 bp | CAGTGCCCAATCAGGCATTACAGAGCTCTCTACACACCCACTGAGCCCAGCACAGTAGCGTTCCTTCACTaGTTTCGCAGTTTCCAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: QCPIRHYRALYTPTEPSTVAFLH*FRSFQG Trigger: TCCTTGGAAACTGCGAAAGCAGTGAAGGAACGCTAC...TGTGCTGGGCTCAGTGGGTGTGTAGAGAGCTCTGTAATGCCTGATTGGGCACTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CCA 90 bp | GATCCAAGCATTTGCAGAGAGAACCGTTGGGCTGGGGAGGGGTGGAGCAGCTCGTGGGATGATAAACTGTaGCTCTGTATTTCCAGCATA | + |
|
Preference number: 4 (lower is better) Translates to: DPSICRENRWAGEGWSSSWDDKL*LCISSI Trigger: TATGCTGGAAATACAGAGCCACAGTTTATCATCCCA...CGAGCTGCTCCACCCCTCCCCAGCCCAACGGTTCTCTCTGCAAATGCTTGGATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR GCA 90 bp | AACAAGCTCAGGCACTACCCACTCAGCAGTGCCCAATCAGGCATTACAGAGCTCCAGACTGCATACCGCTaGATATGGTGTGTAATAACT | + |
|
Preference number: 4 (lower is better) Translates to: NKLRHYPLSSAQSGITELQTAYR*IWCVIT Trigger: AGTTATTACACACCATATGCAGCGGTATGCAGTCTG...GAGCTCTGTAATGCCTGATTGGGCACTGCTGAGTGGGTAGTGCCTGAGCTTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CCA 90 bp | CAGTGCCCAATCAGGCATTACAGAGCTCTCTACACACCCACTGAGCCCAGCACATATACCATGGCGAATTaGCCACTTTGTTGCATATGT | + |
|
Preference number: 4 (lower is better) Translates to: QCPIRHYRALYTPTEPSTYTMAN*PLCCIC Trigger: ACATATGCAACAAAGTGGCCAATTCGCCATGGTATA...TGTGCTGGGCTCAGTGGGTGTGTAGAGAGCTCTGTAATGCCTGATTGGGCACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR TCA 90 bp | AACAAGCTCAGGCACTACCCACTCAGCAGTGCCCAATCAGGCATTACAGAGCTCTCAATGGGGCAATTCTaGATGACTTCATCTACAACT | + |
|
Preference number: 4 (lower is better) Translates to: NKLRHYPLSSAQSGITELSMGQF*MTSSTT Trigger: AGTTGTAGATGAAGTCATTCAGAATTGCCCCATTGA...GAGCTCTGTAATGCCTGATTGGGCACTGCTGAGTGGGTAGTGCCTGAGCTTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR TCA 90 bp | ATTAGCAAACTCTGGATGGAAAAAGATCTCGGGTCCCAGGAATCGCTCATAGCCTGGCGAATTGGCCAATaGTGGGATGATAAACTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: ISKLWMEKDLGSQESLIAWRIGQ*WDDKLW Trigger: CCACAGTTTATCATCCCATCATTGGCCAATTCGCCA...GGCTATGAGCGATTCCTGGGACCCGAGATCTTTTTCCATCCAGAGTTTGCTAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000191578.7 |
||
| CDS-3UTR TCA 90 bp | TCAGGCACTACCCACTCAGCAGTGCCCAATCAGGCATTACAGAGCTCTCTACACTTTAATGGCAATACATaGTGGGATGATAAACTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: SGTTHSAVPNQALQSSLHFNGNT*WDDKLW Trigger: CCACAGTTTATCATCCCATCATGTATTGCCATTAAA...GTGTAGAGAGCTCTGTAATGCCTGATTGGGCACTGCTGAGTGGGTAGTGCCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR TCA 90 bp | AACAAGCTCAGGCACTACCCACTCAGCAGTGCCCAATCAGGCATTACAGAGCTCTTTAATGGCAATACATaGTGGGATGATAAACTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: NKLRHYPLSSAQSGITELFNGNT*WDDKLW Trigger: CCACAGTTTATCATCCCATCATGTATTGCCATTAAA...GAGCTCTGTAATGCCTGATTGGGCACTGCTGAGTGGGTAGTGCCTGAGCTTGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CCA 90 bp | CATGTTTGGTTAAAAACCTCAGAACCATCCATTCAGACAAAAACAGGTCATCAGACCCTCCTCTGGGCTTaGTCACCCACTTTTGCAGAC | + |
|
Preference number: 4 (lower is better) Translates to: HVWLKTSEPSIQTKTGHQTLLWA*SPTFAD Trigger: GTCTGCAAAAGTGGGTGACCAAGCCCAGAGGAGGGT...CTGATGACCTGTTTTTGTCTGAATGGATGGTTCTGAGGTTTTTAACCAAACATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR TCA 90 bp | TCATCTTTTCCTTGGTCACATTGTTTCCCTCCAATACTACAGTTTTTCTTTGACGCCACAGGAATGACATaGGTGACTCCGTCTCCACTG | + |
|
Preference number: 4 (lower is better) Translates to: SSFPWSHCFPPILQFFFDATGMT*VTPSPL Trigger: CAGTGGAGACGGAGTCACTCATGTCATTCCTGTGGC...GTCAAAGAAAAACTGTAGTATTGGAGGGAAACAATGTGACCAAGGAAAAGATGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CCA 90 bp | TTGAACTCATCTTTTCCTTGGTCACATTGTTTCCCTCCAATACTACAGTTTTTCGGTAGAACTCAGGCGTaGAAGCCAGCATTGACCCTC | + |
|
Preference number: 4 (lower is better) Translates to: LNSSFPWSHCFPPILQFFGRTQA*KPALTL Trigger: GAGGGTCAATGCTGGCTTCCACGCCTGAGTTCTACC...GAAAAACTGTAGTATTGGAGGGAAACAATGTGACCAAGGAAAAGATGAGTTCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR GCA 90 bp | AGCTTGCTATCCAACCGCTGTGCTTTTAAAGAGCTACTGCAGAATCTGAAGAAACTCTTCAAATCTCTTTaGAAACGACGTCCAAAGTCC | + |
|
Preference number: 4 (lower is better) Translates to: SLLSNRCAFKELLQNLKKLFKSL*KRRPKS Trigger: GGACTTTGGACGTCGTTTGCAAAGAGATTTGAAGAG...TTTCTTCAGATTCTGCAGTAGCTCTTTAAAAGCACAGCGGTTGGATAGCAAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| 3UTR CAA 72 bp | AGTCCCATGAGGCTGCTTGTTGAACTCATCTTTTCCTaGGTCACATTGTTTCCCTCCAATACTACAGTTTTT | + |
|
Preference number: 4 (lower is better) Translates to: SPMRLLVELIFS*VTLFPSNTTVF Trigger: AAAAACTGTAGTATTGGAGGGAAACAATGTGACCAAGGAAAAGATGAGTTCAACAAGCAGCCTCATGGGACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR GCA 90 bp | TTGAACTCATCTTTTCCTTGGTCACATTGTTTCCCTCCAATACTACAGTTTTTCGTAGCGTTCCTTCACTaGTTTCGCAGTTTCCAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: LNSSFPWSHCFPPILQFFVAFLH*FRSFQG Trigger: TCCTTGGAAACTGCGAAAGCAGTGAAGGAACGCTAC...GAAAAACTGTAGTATTGGAGGGAAACAATGTGACCAAGGAAAAGATGAGTTCAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CCA 90 bp | AGGCTGCTTGTTGAACTCATCTTTTCCTTGGTCACATTGTTTCCCTCCAATACTGCATACCGCTGCATATaGTGTGTAATAACTTGTACA | + |
|
Preference number: 4 (lower is better) Translates to: RLLVELIFSLVTLFPSNTAYRCI*CVITCT Trigger: TGTACAAGTTATTACACACCATATGCAGCGGTATGC...AGTATTGGAGGGAAACAATGTGACCAAGGAAAAGATGAGTTCAACAAGCAGCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR TCA 90 bp | TTGAACTCATCTTTTCCTTGGTCACATTGTTTCCCTCCAATACTACAGTTTTTCAGAAAACTCTTTCTTTaGGATGGCGTTGACTCCGGT | + |
|
Preference number: 4 (lower is better) Translates to: LNSSFPWSHCFPPILQFFRKLFL*DGVDSG Trigger: ACCGGAGTCAACGCCATCTCAAAGAAAGAGTTTTCT...GAAAAACTGTAGTATTGGAGGGAAACAATGTGACCAAGGAAAAGATGAGTTCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CCA 90 bp | TTGAACTCATCTTTTCCTTGGTCACATTGTTTCCCTCCAATACTACAGTTTTTCTTAGCAAACTCTGGATaGAAAAAGATCTCGGGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: LNSSFPWSHCFPPILQFFLANSG*KKISGP Trigger: GGGACCCGAGATCTTTTTCCATCCAGAGTTTGCTAA...GAAAAACTGTAGTATTGGAGGGAAACAATGTGACCAAGGAAAAGATGAGTTCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CCA 90 bp | TTGGTTAAAAACCTCAGAACCATCCATTCAGACAAAAACAGGTCATCAGAAAGATTAGCAAACTCTGGATaGAAAAAGATCTCGGGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: LVKNLRTIHSDKNRSSERLANSG*KKISGP Trigger: GGGACCCGAGATCTTTTTCCATCCAGAGTTTGCTAA...TCTTTCTGATGACCTGTTTTTGTCTGAATGGATGGTTCTGAGGTTTTTAACCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR GCA 90 bp | TTGGTTAAAAACCTCAGAACCATCCATTCAGACAAAAACAGGTCATCAGAAAGACTCTTCAAATCTCTTTaGAAACGACGTCCAAAGTCC | + |
|
Preference number: 4 (lower is better) Translates to: LVKNLRTIHSDKNRSSERLFKSL*KRRPKS Trigger: GGACTTTGGACGTCGTTTGCAAAGAGATTTGAAGAG...TCTTTCTGATGACCTGTTTTTGTCTGAATGGATGGTTCTGAGGTTTTTAACCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CCA 90 bp | CATGTTTGGTTAAAAACCTCAGAACCATCCATTCAGACAAAAACAGGTCATCAGTGGGATGATAAACTGTaGCTCTGTATTTCCAGCATA | + |
|
Preference number: 4 (lower is better) Translates to: HVWLKTSEPSIQTKTGHQWDDKL*LCISSI Trigger: TATGCTGGAAATACAGAGCCACAGTTTATCATCCCA...CTGATGACCTGTTTTTGTCTGAATGGATGGTTCTGAGGTTTTTAACCAAACATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 ENSMUST00000191578.7 |
||
| CDS-3UTR CCA 90 bp | TTGAACTCATCTTTTCCTTGGTCACATTGTTTCCCTCCAATACTACAGTTTTTCTGGATTAGCAAACTCTaGATGGAAAAAGATCTCGGG | + |
|
Preference number: 4 (lower is better) Translates to: LNSSFPWSHCFPPILQFFWISKL*MEKDLG Trigger: CCCGAGATCTTTTTCCATCCAGAGTTTGCTAATCCA...GAAAAACTGTAGTATTGGAGGGAAACAATGTGACCAAGGAAAAGATGAGTTCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CCA 90 bp | TTGGTTAAAAACCTCAGAACCATCCATTCAGACAAAAACAGGTCATCAGAAAGATGGGATGATAAACTGTaGCTCTGTATTTCCAGCATA | + |
|
Preference number: 4 (lower is better) Translates to: LVKNLRTIHSDKNRSSERWDDKL*LCISSI Trigger: TATGCTGGAAATACAGAGCCACAGTTTATCATCCCA...TCTTTCTGATGACCTGTTTTTGTCTGAATGGATGGTTCTGAGGTTTTTAACCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 ENSMUST00000191578.7 |
||
| CDS-3UTR CCA 90 bp | TCATCTTTTCCTTGGTCACATTGTTTCCCTCCAATACTACAGTTTTTCTTTGACGCATACCGCTGCATATaGTGTGTAATAACTTGTACA | + |
|
Preference number: 4 (lower is better) Translates to: SSFPWSHCFPPILQFFFDAYRCI*CVITCT Trigger: TGTACAAGTTATTACACACCATATGCAGCGGTATGC...GTCAAAGAAAAACTGTAGTATTGGAGGGAAACAATGTGACCAAGGAAAAGATGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CAA 90 bp | GATCCAAGCATTTGCAGAGAGAACCGTTGGGCTGGGGAGGGGTGGAGCAGCTCGCTATACCATGGCGAATaGGCCACTTTGTTGCATATG | + |
|
Preference number: 5 (lower is better) Translates to: DPSICRENRWAGEGWSSSLYHGE*ATLLHM Trigger: CATATGCAACAAAGTGGCCAATTCGCCATGGTATAG...CGAGCTGCTCCACCCCTCCCCAGCCCAACGGTTCTCTCTGCAAATGCTTGGATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CAA 90 bp | CAGTGCCCAATCAGGCATTACAGAGCTCTCTACACACCCACTGAGCCCAGCACAGGCGAATTGGCCACTTaGTTGCATATGTGGGCTTTT | + |
|
Preference number: 5 (lower is better) Translates to: QCPIRHYRALYTPTEPSTGELAT*LHMWAF Trigger: AAAAGCCCACATATGCAACAAAGTGGCCAATTCGCC...TGTGCTGGGCTCAGTGGGTGTGTAGAGAGCTCTGTAATGCCTGATTGGGCACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CAA 90 bp | TCAGGCACTACCCACTCAGCAGTGCCCAATCAGGCATTACAGAGCTCTCTACACCAGCATATCCTAGTTTaGTATATCCCGTGCCACAGT | + |
|
Preference number: 5 (lower is better) Translates to: SGTTHSAVPNQALQSSLHQHILV*YIPCHS Trigger: ACTGTGGCACGGGATATACAAAACTAGGATATGCTG...GTGTAGAGAGCTCTGTAATGCCTGATTGGGCACTGCTGAGTGGGTAGTGCCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CAA 90 bp | AGCTTGCTATCCAACCGCTGTGCTTTTAAAGAGCTACTGCAGAATCTGAAGAAAGAATTGGCCACTTTGTaGCATATGTGGGCTTTTCTA | + |
|
Preference number: 5 (lower is better) Translates to: SLLSNRCAFKELLQNLKKELATL*HMWAFL Trigger: TAGAAAAGCCCACATATGCAACAAAGTGGCCAATTC...TTTCTTCAGATTCTGCAGTAGCTCTTTAAAAGCACAGCGGTTGGATAGCAAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CAA 90 bp | CATGTTTGGTTAAAAACCTCAGAACCATCCATTCAGACAAAAACAGGTCATCAGGGCGAATTGGCCACTTaGTTGCATATGTGGGCTTTT | + |
|
Preference number: 5 (lower is better) Translates to: HVWLKTSEPSIQTKTGHQGELAT*LHMWAF Trigger: AAAAGCCCACATATGCAACAAAGTGGCCAATTCGCC...CTGATGACCTGTTTTTGTCTGAATGGATGGTTCTGAGGTTTTTAACCAAACATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CAA 90 bp | TCATCTTTTCCTTGGTCACATTGTTTCCCTCCAATACTACAGTTTTTCTTTGACACTCCGGTGTACTGTTaGATCCACTTTGACCCATCG | + |
|
Preference number: 5 (lower is better) Translates to: SSFPWSHCFPPILQFFFDTPVYC*IHFDPS Trigger: CGATGGGTCAAAGTGGATCAAACAGTACACCGGAGT...GTCAAAGAAAAACTGTAGTATTGGAGGGAAACAATGTGACCAAGGAAAAGATGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CAA 90 bp | CATGTTTGGTTAAAAACCTCAGAACCATCCATTCAGACAAAAACAGGTCATCAGTTCTTTGAGATGGCGTaGACTCCGGTGTACTGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: HVWLKTSEPSIQTKTGHQFFEMA*TPVYCL Trigger: CAAACAGTACACCGGAGTCAACGCCATCTCAAAGAA...CTGATGACCTGTTTTTGTCTGAATGGATGGTTCTGAGGTTTTTAACCAAACATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CAA 90 bp | CATGTTTGGTTAAAAACCTCAGAACCATCCATTCAGACAAAAACAGGTCATCAGCAGCATATCCTAGTTTaGTATATCCCGTGCCACAGT | + |
|
Preference number: 5 (lower is better) Translates to: HVWLKTSEPSIQTKTGHQQHILV*YIPCHS Trigger: ACTGTGGCACGGGATATACAAAACTAGGATATGCTG...CTGATGACCTGTTTTTGTCTGAATGGATGGTTCTGAGGTTTTTAACCAAACATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 ENSMUST00000191578.7 |
||
| CDS-3UTR CAA 90 bp | TTGAACTCATCTTTTCCTTGGTCACATTGTTTCCCTCCAATACTACAGTTTTTCTTCTTTGAGATGGCGTaGACTCCGGTGTACTGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: LNSSFPWSHCFPPILQFFFFEMA*TPVYCL Trigger: CAAACAGTACACCGGAGTCAACGCCATCTCAAAGAA...GAAAAACTGTAGTATTGGAGGGAAACAATGTGACCAAGGAAAAGATGAGTTCAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CAA 90 bp | TTGGTTAAAAACCTCAGAACCATCCATTCAGACAAAAACAGGTCATCAGAAAGACAGCATATCCTAGTTTaGTATATCCCGTGCCACAGT | + |
|
Preference number: 5 (lower is better) Translates to: LVKNLRTIHSDKNRSSERQHILV*YIPCHS Trigger: ACTGTGGCACGGGATATACAAAACTAGGATATGCTG...TCTTTCTGATGACCTGTTTTTGTCTGAATGGATGGTTCTGAGGTTTTTAACCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 ENSMUST00000191578.7 |
||
| CDS-3UTR CAA 90 bp | TTGAACTCATCTTTTCCTTGGTCACATTGTTTCCCTCCAATACTACAGTTTTTCCTATACCATGGCGAATaGGCCACTTTGTTGCATATG | + |
|
Preference number: 5 (lower is better) Translates to: LNSSFPWSHCFPPILQFFLYHGE*ATLLHM Trigger: CATATGCAACAAAGTGGCCAATTCGCCATGGTATAG...GAAAAACTGTAGTATTGGAGGGAAACAATGTGACCAAGGAAAAGATGAGTTCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||
| CDS-3UTR CAA 90 bp | TCATCTTTTCCTTGGTCACATTGTTTCCCTCCAATACTACAGTTTTTCTTTGACGAATTGGCCACTTTGTaGCATATGTGGGCTTTTCTA | + |
|
Preference number: 5 (lower is better) Translates to: SSFPWSHCFPPILQFFFDELATL*HMWAFL Trigger: TAGAAAAGCCCACATATGCAACAAAGTGGCCAATTC...GTCAAAGAAAAACTGTAGTATTGGAGGGAAACAATGTGACCAAGGAAAAGATGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000027579.17 ENSMUST00000178474.8 |
||