Pregenerated sensors for ACTR1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025228Ensembl transcript IDs: ENSMUST00000040270.6, ENSMUST00000235752.2, ENSMUST00000237477.2, ENSMUST00000237742.2
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCAGGGCAGTGGGCAAGTGGGGTTAGGAGAAAGGAAGAGGCTGGCTaGGGTGCCTTCCTGTGCAGCCTCCAATCACAGGGTCCTGAGGCC | + |
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Preference number: 1 (lower is better) Translates to: PGQWASGVRRKEEAG*GAFLCSLQSQGPEA Trigger: GGCCTCAGGACCCTGTGATTGGAGGCTGCACAGGAAGGCACCCCAGCCAGCCTCTTCCTTTCTCCTAACCCCACTTGCCCACTGCCCTGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR GCA 90 bp | TCCGCACAGCCAGACAAAGGCCTGGCTGAGAAAGGAGTGGGCCTCTaGCAGAGCTCTTCCTGTAAGGGGTCAGTTAGTAGTCAACCCCAG | + |
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Preference number: 1 (lower is better) Translates to: SAQPDKGLAEKGVGL*QSSSCKGSVSSQPQ Trigger: CTGGGGTTGACTACTAACTGACCCCTTACAGGAAGAGCTCTGGCAGAGGCCCACTCCTTTCTCAGCCAGGCCTTTGTCTGGCTGTGCGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR GCA 90 bp | AGTGGGGTTAGGAGAAAGGAAGAGGCTGGCTGGGGTGCCTTCCTGTaGAGCCTCCAATCACAGGGTCCTGAGGCCCATGAATACTGTCAG | + |
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Preference number: 1 (lower is better) Translates to: SGVRRKEEAGWGAFL*SLQSQGPEAHEYCQ Trigger: CTGACAGTATTCATGGGCCTCAGGACCCTGTGATTGGAGGCTGCACAGGAAGGCACCCCAGCCAGCCTCTTCCTTTCTCCTAACCCCACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR TCA 90 bp | CCCTACCTGGTTCCCAGGTGGACACGAGTGTACCCTGCTCTCTCTTaGACCCAGTCTCTAACCACGGCCAGACTGCTTTTTCAGTCTCCC | + |
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Preference number: 1 (lower is better) Translates to: PYLVPRWTRVYPALS*TQSLTTARLLFQSP Trigger: GGGAGACTGAAAAAGCAGTCTGGCCGTGGTTAGAGACTGGGTTCAAGAGAGAGCAGGGTACACTCGTGTCCACCTGGGAACCAGGTAGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR CCA 90 bp | TGCAGCCCACAGTCCTTACAGTGTCTCAGGGCCCCTGGATGTGGCTaGGGCTTGTACATTAACCCTGAAGCTATCTCCTGTCCTCAAATG | + |
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Preference number: 1 (lower is better) Translates to: CSPQSLQCLRAPGCG*GLYINPEAISCPQM Trigger: CATTTGAGGACAGGAGATAGCTTCAGGGTTAATGTACAAGCCCCAGCCACATCCAGGGGCCCTGAGACACTGTAAGGACTGTGGGCTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR GCA 90 bp | TTAAAGGGTCTAGATCTCCAACACACCTCCCTCGCAAGGGGCCTCTaGCACAGAGAGATGCTACTTTCTGTCTTAGAAAATCCAACCACA | + |
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Preference number: 1 (lower is better) Translates to: LKGLDLQHTSLARGL*HREMLLSVLENPTT Trigger: TGTGGTTGGATTTTCTAAGACAGAAAGTAGCATCTCTCTGTGGCAGAGGCCCCTTGCGAGGGAGGTGTGTTGGAGATCTAGACCCTTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR CCA 90 bp | CCTGCAGCCCACAGTCCTTACAGTGTCTCAGGGCCCCTGGATGTGGCTGGGGCTTGGGCCCAGGATCTCTaGGCCACACGGCACTCGATA | + |
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Preference number: 2 (lower is better) Translates to: PAAHSPYSVSGPLDVAGAWAQDL*ATRHSI Trigger: TATCGAGTGCCGTGTGGCCCAGAGATCCTGGGCCCA...AGCCCCAGCCACATCCAGGGGCCCTGAGACACTGTAAGGACTGTGGGCTGCAGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR CCA 90 bp | CCTGCAGCCCACAGTCCTTACAGTGTCTCAGGGCCCCTGGATGTGGCTGGGGCTAGCCAGACAAAGGCCTaGCTGAGAAAGGAGTGGGCC | + |
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Preference number: 2 (lower is better) Translates to: PAAHSPYSVSGPLDVAGASQTKA*LRKEWA Trigger: GGCCCACTCCTTTCTCAGCCAGGCCTTTGTCTGGCT...AGCCCCAGCCACATCCAGGGGCCCTGAGACACTGTAAGGACTGTGGGCTGCAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR GCA 90 bp | CCTTCCGTAGGTAGAGGCGGAGGAAGCGTGAGACATCCCGGCCAGCGATGTCGAAGGCTCAGCACGGCTTaGATGGAGATGAAGAGGGCC | + |
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Preference number: 2 (lower is better) Translates to: PSVGRGGGSVRHPGQRCRRLSTA*MEMKRA Trigger: GGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT...TCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237477.2 |
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| 3UTR-3UTR GCA 90 bp | CCTTCCGTAGGTAGAGGCGGAGGAAGCGTGAGACATCCCGGCCAGCGATGTCGACCACGCCTGTGGTTCTaGCCGTGGCATAAAGGCTCA | + |
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Preference number: 2 (lower is better) Translates to: PSVGRGGGSVRHPGQRCRPRLWF*PWHKGS Trigger: TGAGCCTTTATGCCACGGGCAGAACCACAGGCGTGG...TCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237477.2 |
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| 3UTR-3UTR CCA 90 bp | GGACCTGCAGCCCACAGTCCTTACAGTGTCTCAGGGCCCCTGGATGTGGCTGGGTGGCTGAGAAAGGAGTaGGCCTCTGCCAGAGCTCTT | + |
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Preference number: 2 (lower is better) Translates to: GPAAHSPYSVSGPLDVAGWLRKE*ASARAL Trigger: AAGAGCTCTGGCAGAGGCCCACTCCTTTCTCAGCCA...CCCAGCCACATCCAGGGGCCCTGAGACACTGTAAGGACTGTGGGCTGCAGGTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR CCA 90 bp | TCCGTAGGTAGAGGCGGAGGAAGCGTGAGACATCCCGGCCAGCGATGTCGATGCCTGTGGTTCTGCCCGTaGCATAAAGGCTCAGCACGG | + |
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Preference number: 2 (lower is better) Translates to: SVGRGGGSVRHPGQRCRCLWFCP*HKGSAR Trigger: CCGTGCTGAGCCTTTATGCCACGGGCAGAACCACAG...GCATCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237477.2 |
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| 3UTR-3UTR GCA 90 bp | AATACTGTCTGGAATCTGGAACTGAGGCGAGACTTGGTGTCACGGGTGAGGGTGAGAGGCTGGCTGGGGTaGCTTCCTGTGCAGCCTCCA | + |
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Preference number: 2 (lower is better) Translates to: NTVWNLELRRDLVSRVRVRGWLG*LPVQPP Trigger: TGGAGGCTGCACAGGAAGGCACCCCAGCCAGCCTCT...CACCCTCACCCGTGACACCAAGTCTCGCCTCAGTTCCAGATTCCAGACAGTATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR TCA 90 bp | GGGGTGCCTTCCTGTGCAGCCTCCAATCACAGGGTCCTGAGGCCCATGAATACTTACCCTGCTCTCTCTTaGACCCAGTCTCTAACCACG | + |
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Preference number: 2 (lower is better) Translates to: GVPSCAASNHRVLRPMNTYPALS*TQSLTT Trigger: CGTGGTTAGAGACTGGGTTCAAGAGAGAGCAGGGTA...AGTATTCATGGGCCTCAGGACCCTGTGATTGGAGGCTGCACAGGAAGGCACCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR GCA 90 bp | ACACCACGCCTGTGGTTCTGCCCGTGGCATAAAGGCTCAGCACGGCTTGCATGGCTCGAAGAAGACTTCTaGAGCTCGCTCCCGGTTTTT | + |
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Preference number: 2 (lower is better) Translates to: TPRLWFCPWHKGSARLAWLEEDF*SSLPVF Trigger: AAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAG...CCATGCAAGCCGTGCTGAGCCTTTATGCCACGGGCAGAACCACAGGCGTGGTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237477.2 |
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| 3UTR CAA 90 bp | TCCCTACCTGGTTCCCAGGTGGACACGAGTGTACCCTGCTCTCTCTaGAACCCAGTCTCTAACCACGGCCAGACTGCTTTTTCAGTCTCC | + |
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Preference number: 2 (lower is better) Translates to: SLPGSQVDTSVPCSL*NPVSNHGQTAFSVS Trigger: GGAGACTGAAAAAGCAGTCTGGCCGTGGTTAGAGACTGGGTTCAAGAGAGAGCAGGGTACACTCGTGTCCACCTGGGAACCAGGTAGGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR GCA 90 bp | TGCCATGTTCCATGGGGTAACGGATTGACAGCAGCCCCCGGTGCTCCTCCGCTTTGCTGTTCTTGTACTTaGTGTTCTTCTGGAGGGCTG | + |
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Preference number: 2 (lower is better) Translates to: CHVPWGNGLTAAPGAPPLCCSCT*CSSGGL Trigger: CAGCCCTCCAGAAGAACAGCAAGTACAAGAACAGCA...AAGCGGAGGAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGGAACATGGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000235752.2 |
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| 3UTR-3UTR CCA 90 bp | AATACTGTCTGGAATCTGGAACTGAGGCGAGACTTGGTGTCACGGGTGAGGGTGGAGAAAGGAAGAGGCTaGCTGGGGTGCCTTCCTGTG | + |
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Preference number: 2 (lower is better) Translates to: NTVWNLELRRDLVSRVRVEKGRG*LGCLPV Trigger: CACAGGAAGGCACCCCAGCCAGCCTCTTCCTTTCTC...CACCCTCACCCGTGACACCAAGTCTCGCCTCAGTTCCAGATTCCAGACAGTATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR CAA 90 bp | CCACAGTCCTTACAGTGTCTCAGGGCCCCTGGATGTGGCTGGGGCTaGTACATTAACCCTGAAGCTATCTCCTGTCCTCAAATGCCCAGT | + |
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Preference number: 2 (lower is better) Translates to: PQSLQCLRAPGCGWG*YINPEAISCPQMPS Trigger: ACTGGGCATTTGAGGACAGGAGATAGCTTCAGGGTTAATGTACAAGCCCCAGCCACATCCAGGGGCCCTGAGACACTGTAAGGACTGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR CCA 90 bp | TGCAGCCTCCAATCACAGGGTCCTGAGGCCCATGAATACTGTCAGTTCTCCATCTGGCTGAGAAAGGAGTaGGCCTCTGCCAGAGCTCTT | + |
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Preference number: 2 (lower is better) Translates to: CSLQSQGPEAHEYCQFSIWLRKE*ASARAL Trigger: AAGAGCTCTGGCAGAGGCCCACTCCTTTCTCAGCCA...GATGGAGAACTGACAGTATTCATGGGCCTCAGGACCCTGTGATTGGAGGCTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR TCA 90 bp | GTCATAGGATGGCGGAGAAAGAATACTGTCTGGAATCTGGAACTGAGGCGAGACAGACAAAGGCCTGGCTaGGAAAGGAGTGGGCCTCTG | + |
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Preference number: 2 (lower is better) Translates to: VIGWRRKNTVWNLELRRDRQRPG*ERSGPL Trigger: CAGAGGCCCACTCCTTTCTCAGCCAGGCCTTTGTCT...GTCTCGCCTCAGTTCCAGATTCCAGACAGTATTCTTTCTCCGCCATCCTATGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR TCA 90 bp | CCTGAAGCTATCTCCTGTCCTCAAATGCCCAGTGTGGTCCTAATCCCTACCTGGTACCCTGCTCTCTCTTaGACCCAGTCTCTAACCACG | + |
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Preference number: 2 (lower is better) Translates to: PEAISCPQMPSVVLIPTWYPALS*TQSLTT Trigger: CGTGGTTAGAGACTGGGTTCAAGAGAGAGCAGGGTA...CCAGGTAGGGATTAGGACCACACTGGGCATTTGAGGACAGGAGATAGCTTCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR CCA 90 bp | GTCATAGGATGGCGGAGAAAGAATACTGTCTGGAATCTGGAACTGAGGCGAGACGAGAAAGGAAGAGGCTaGCTGGGGTGCCTTCCTGTG | + |
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Preference number: 2 (lower is better) Translates to: VIGWRRKNTVWNLELRRDEKGRG*LGCLPV Trigger: CACAGGAAGGCACCCCAGCCAGCCTCTTCCTTTCTC...GTCTCGCCTCAGTTCCAGATTCCAGACAGTATTCTTTCTCCGCCATCCTATGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR CCA 90 bp | GTCATAGGATGGCGGAGAAAGAATACTGTCTGGAATCTGGAACTGAGGCGAGACGTCCTAATCCCTACCTaGTTCCCAGGTGGACACGAG | + |
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Preference number: 2 (lower is better) Translates to: VIGWRRKNTVWNLELRRDVLIPT*FPGGHE Trigger: CTCGTGTCCACCTGGGAACCAGGTAGGGATTAGGAC...GTCTCGCCTCAGTTCCAGATTCCAGACAGTATTCTTTCTCCGCCATCCTATGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR TCA 90 bp | TTGTACATTAACCCTGAAGCTATCTCCTGTCCTCAAATGCCCAGTGTGGTCCTAAGACAAAGGCCTGGCTaGGAAAGGAGTGGGCCTCTG | + |
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Preference number: 2 (lower is better) Translates to: LYINPEAISCPQMPSVVLRQRPG*ERSGPL Trigger: CAGAGGCCCACTCCTTTCTCAGCCAGGCCTTTGTCT...TAGGACCACACTGGGCATTTGAGGACAGGAGATAGCTTCAGGGTTAATGTACAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR GCA 90 bp | CCTCTGCCACAGAGAGATGCTACTTTCTGTCTTAGAAAATCCAACCACAACCAGTGGGGTGCCTTCCTGTaGAGCCTCCAATCACAGGGT | + |
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Preference number: 2 (lower is better) Translates to: PLPQRDATFCLRKSNHNQWGAFL*SLQSQG Trigger: ACCCTGTGATTGGAGGCTGCACAGGAAGGCACCCCA...CTGGTTGTGGTTGGATTTTCTAAGACAGAAAGTAGCATCTCTCTGTGGCAGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR CCA 90 bp | TTGTACATTAACCCTGAAGCTATCTCCTGTCCTCAAATGCCCAGTGTGGTCCTAGTTCAATGTCCTCTCTaGGCCCAGGATCTCTGGGCC | + |
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Preference number: 2 (lower is better) Translates to: LYINPEAISCPQMPSVVLVQCPL*AQDLWA Trigger: GGCCCAGAGATCCTGGGCCCAGAGAGGACATTGAAC...TAGGACCACACTGGGCATTTGAGGACAGGAGATAGCTTCAGGGTTAATGTACAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR TCA 90 bp | TGGTTAACTGCAGCTTGCTTTGTTTTAAAGGGTCTAGATCTCCAACACACCTCCGACAGCACAGAAGGATaGGCAGGGGAGACAGCAGCT | + |
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Preference number: 2 (lower is better) Translates to: WLTAACFVLKGLDLQHTSDSTEG*AGETAA Trigger: AGCTGCTGTCTCCCCTGCTCATCCTTCTGTGCTGTC...GGAGGTGTGTTGGAGATCTAGACCCTTTAAAACAAAGCAAGCTGCAGTTAACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR CAA 90 bp | CTGATTCCACACACACCAGCTTCGCTTTACATCTGGCAGGGACCTTaGGTCATAGGATGGCGGAGAAAGAATACTGTCTGGAATCTGGAA | + |
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Preference number: 2 (lower is better) Translates to: LIPHTPASLYIWQGP*VIGWRRKNTVWNLE Trigger: TTCCAGATTCCAGACAGTATTCTTTCTCCGCCATCCTATGACCAAAGGTCCCTGCCAGATGTAAAGCGAAGCTGGTGTGTGTGGAATCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR CCA 90 bp | AATACTGTCTGGAATCTGGAACTGAGGCGAGACTTGGTGTCACGGGTGAGGGTGAGAAAGAATACTGTCTaGAATCTGGAACTGAGGCGA | + |
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Preference number: 2 (lower is better) Translates to: NTVWNLELRRDLVSRVRVRKNTV*NLELRR Trigger: TCGCCTCAGTTCCAGATTCCAGACAGTATTCTTTCT...CACCCTCACCCGTGACACCAAGTCTCGCCTCAGTTCCAGATTCCAGACAGTATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR CCA 90 bp | TACATCTGGCAGGGACCTTTGGTCATAGGATGGCGGAGAAAGAATACTGTCTGGGCTTCGCTTTACATCTaGCAGGGACCTTTGGTCATA | + |
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Preference number: 2 (lower is better) Translates to: YIWQGPLVIGWRRKNTVWASLYI*QGPLVI Trigger: TATGACCAAAGGTCCCTGCCAGATGTAAAGCGAAGC...CCAGACAGTATTCTTTCTCCGCCATCCTATGACCAAAGGTCCCTGCCAGATGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR CCA 90 bp | GTCATAGGATGGCGGAGAAAGAATACTGTCTGGAATCTGGAACTGAGGCGAGACTGCCATTTAGTCCACTaGTCAATTAGAGTGGCAAAA | + |
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Preference number: 2 (lower is better) Translates to: VIGWRRKNTVWNLELRRDCHLVH*SIRVAK Trigger: TTTTGCCACTCTAATTGACCAGTGGACTAAATGGCA...GTCTCGCCTCAGTTCCAGATTCCAGACAGTATTCTTTCTCCGCCATCCTATGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR GCA 72 bp | CGAAACCAGGACGTAGGAGAAGCCAACAGCAGGACCTaGAGCCCACAGTCCTTACAGTGTCTCAGGGCCCCT | + |
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Preference number: 3 (lower is better) Translates to: RNQDVGEANSRT*SPQSLQCLRAP Trigger: AGGGGCCCTGAGACACTGTAAGGACTGTGGGCTGCAGGTCCTGCTGTTGGCTTCTCCTACGTCCTGGTTTCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR CCA 72 bp | TGGGCAAGTGGGGTTAGGAGAAAGGAAGAGGCTGGCTaGGGTGCCTTCCTGTGCAGCCTCCAATCACAGGGT | + |
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Preference number: 3 (lower is better) Translates to: WASGVRRKEEAG*GAFLCSLQSQG Trigger: ACCCTGTGATTGGAGGCTGCACAGGAAGGCACCCCAGCCAGCCTCTTCCTTTCTCCTAACCCCACTTGCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR GCA 72 bp | TCCCTACCTGGTTCCCAGGTGGACACGAGTGTACCCTaGTCTCTCTTGAACCCAGTCTCTAACCACGGCCAG | + |
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Preference number: 3 (lower is better) Translates to: SLPGSQVDTSVP*SLLNPVSNHGQ Trigger: CTGGCCGTGGTTAGAGACTGGGTTCAAGAGAGAGCAGGGTACACTCGTGTCCACCTGGGAACCAGGTAGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR TCA 72 bp | GGTCTTGGCACTTTGGTCAGCCCCTTCTCTCCAATCTaGCCAACCCAGAAGGGGCCTCCCTGCCATTTAGTC | + |
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Preference number: 3 (lower is better) Translates to: GLGTLVSPFSPI*PTQKGPPCHLV Trigger: GACTAAATGGCAGGGAGGCCCCTTCTGGGTTGGTCAGATTGGAGAGAAGGGGCTGACCAAAGTGCCAAGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR CAA 90 bp | CATGTTCCATGGGGTAACGGATTGACAGCAGCCCCCGGTGCTCCTCCGCTTTGGGGATCCTTGCTGTTCTaGTACTTGCTGTTCTTCTGG | + |
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Preference number: 3 (lower is better) Translates to: HVPWGNGLTAAPGAPPLWGSLLF*YLLFFW Trigger: CCAGAAGAACAGCAAGTACAAGAACAGCAAGGATCC...CCAAAGCGGAGGAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGGAACATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000235752.2 |
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| 3UTR CCA 72 bp | GTAGTAACCATAGTTCCGCACAGCCAGACAAAGGCCTaGCTGAGAAAGGAGTGGGCCTCTGCCAGAGCTCTT | + |
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Preference number: 3 (lower is better) Translates to: VVTIVPHSQTKA*LRKEWASARAL Trigger: AAGAGCTCTGGCAGAGGCCCACTCCTTTCTCAGCCAGGCCTTTGTCTGGCTGTGCGGAACTATGGTTACTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR CCA 72 bp | CCACTTCTGAGAGCAAGGCTGGCACCCATTAGGTCTTaGCACTTTGGTCAGCCCCTTCTCTCCAATCTGACC | + |
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Preference number: 3 (lower is better) Translates to: PLLRARLAPIRS*HFGQPLLSNLT Trigger: GGTCAGATTGGAGAGAAGGGGCTGACCAAAGTGCCAAGACCTAATGGGTGCCAGCCTTGCTCTCAGAAGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR TCA 72 bp | GTTCCCAGGTGGACACGAGTGTACCCTGCTCTCTCTTaGACCCAGTCTCTAACCACGGCCAGACTGCTTTTT | + |
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Preference number: 3 (lower is better) Translates to: VPRWTRVYPALS*TQSLTTARLLF Trigger: AAAAAGCAGTCTGGCCGTGGTTAGAGACTGGGTTCAAGAGAGAGCAGGGTACACTCGTGTCCACCTGGGAAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR CCA 72 bp | CAGTCCTTACAGTGTCTCAGGGCCCCTGGATGTGGCTaGGGCTTGTACATTAACCCTGAAGCTATCTCCTGT | + |
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Preference number: 3 (lower is better) Translates to: QSLQCLRAPGCG*GLYINPEAISC Trigger: ACAGGAGATAGCTTCAGGGTTAATGTACAAGCCCCAGCCACATCCAGGGGCCCTGAGACACTGTAAGGACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR CAA 90 bp | CCTGAAGCTATCTCCTGTCCTCAAATGCCCAGTGTGGTCCTAATCCCTACCTGGGTACCCTGCTCTCTCTaGAACCCAGTCTCTAACCAC | + |
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Preference number: 3 (lower is better) Translates to: PEAISCPQMPSVVLIPTWVPCSL*NPVSNH Trigger: GTGGTTAGAGACTGGGTTCAAGAGAGAGCAGGGTAC...CCAGGTAGGGATTAGGACCACACTGGGCATTTGAGGACAGGAGATAGCTTCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR GCA 72 bp | CTAGATCTCCAACACACCTCCCTCGCAAGGGGCCTCTaGCACAGAGAGATGCTACTTTCTGTCTTAGAAAAT | + |
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Preference number: 3 (lower is better) Translates to: LDLQHTSLARGL*HREMLLSVLEN Trigger: ATTTTCTAAGACAGAAAGTAGCATCTCTCTGTGGCAGAGGCCCCTTGCGAGGGAGGTGTGTTGGAGATCTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR CAA 90 bp | TGGTTAACTGCAGCTTGCTTTGTTTTAAAGGGTCTAGATCTCCAACACACCTCCGTACCCTGCTCTCTCTaGAACCCAGTCTCTAACCAC | + |
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Preference number: 3 (lower is better) Translates to: WLTAACFVLKGLDLQHTSVPCSL*NPVSNH Trigger: GTGGTTAGAGACTGGGTTCAAGAGAGAGCAGGGTAC...GGAGGTGTGTTGGAGATCTAGACCCTTTAAAACAAAGCAAGCTGCAGTTAACCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR CAA 90 bp | AATACTGTCTGGAATCTGGAACTGAGGCGAGACTTGGTGTCACGGGTGAGGGTGATGGTTAACTGCAGCTaGCTTTGTTTTAAAGGGTCT | + |
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Preference number: 3 (lower is better) Translates to: NTVWNLELRRDLVSRVRVMVNCS*LCFKGS Trigger: AGACCCTTTAAAACAAAGCAAGCTGCAGTTAACCAT...CACCCTCACCCGTGACACCAAGTCTCGCCTCAGTTCCAGATTCCAGACAGTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR-3UTR CAA 90 bp | GTCATAGGATGGCGGAGAAAGAATACTGTCTGGAATCTGGAACTGAGGCGAGACATGGTTAACTGCAGCTaGCTTTGTTTTAAAGGGTCT | + |
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Preference number: 3 (lower is better) Translates to: VIGWRRKNTVWNLELRRDMVNCS*LCFKGS Trigger: AGACCCTTTAAAACAAAGCAAGCTGCAGTTAACCAT...GTCTCGCCTCAGTTCCAGATTCCAGACAGTATTCTTTCTCCGCCATCCTATGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR TCA 90 bp | CCTGCAGCCCACAGTCCTTACAGTGTCTCAGGGCCCCTGGATGTGGCTGGGGCTCATGGGGTAACGGATTaGCAGCAGCCCCCGGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: PAAHSPYSVSGPLDVAGAHGVTD*QQPPVL Trigger: GAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATG...AGCCCCAGCCACATCCAGGGGCCCTGAGACACTGTAAGGACTGTGGGCTGCAGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR TCA 90 bp | TCCGCACAGCCAGACAAAGGCCTGGCTGAGAAAGGAGTGGGCCTCTGCCAGAGCCCAGGGCTCCTGCCATaGCACGAACATGTTTGGGTC | + |
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Preference number: 4 (lower is better) Translates to: SAQPDKGLAEKGVGLCQSPGLLP*HEHVWV Trigger: GACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGG...GCTCTGGCAGAGGCCCACTCCTTTCTCAGCCAGGCCTTTGTCTGGCTGTGCGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR GCA 90 bp | GGGGTGCCTTCCTGTGCAGCCTCCAATCACAGGGTCCTGAGGCCCATGAATACTAGGCTCAGCACGGCTTaGATGGAGATGAAGAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: GVPSCAASNHRVLRPMNTRLSTA*MEMKRA Trigger: GGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT...AGTATTCATGGGCCTCAGGACCCTGTGATTGGAGGCTGCACAGGAAGGCACCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR GCA 90 bp | GAGAAAGGAAGAGGCTGGCTGGGGTGCCTTCCTGTGCAGCCTCCAATCACAGGGGGCCAATCTCAATGGTaGTGCCATCGGGCAGGTAGT | + |
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Preference number: 4 (lower is better) Translates to: EKGRGWLGCLPVQPPITGGQSQW*CHRAGS Trigger: ACTACCTGCCCGATGGCAGCACCATTGAGATTGGCC...CCCTGTGATTGGAGGCTGCACAGGAAGGCACCCCAGCCAGCCTCTTCCTTTCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR CCA 90 bp | AAGGCCTGGCTGAGAAAGGAGTGGGCCTCTGCCAGAGCTCTTCCTGTAAGGGGTCTGTGGTTCTGCCCGTaGCATAAAGGCTCAGCACGG | + |
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Preference number: 4 (lower is better) Translates to: KAWLRKEWASARALPVRGLWFCP*HKGSAR Trigger: CCGTGCTGAGCCTTTATGCCACGGGCAGAACCACAG...ACCCCTTACAGGAAGAGCTCTGGCAGAGGCCCACTCCTTTCTCAGCCAGGCCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR GCA 90 bp | TCCGCACAGCCAGACAAAGGCCTGGCTGAGAAAGGAGTGGGCCTCTGCCAGAGCACCTTCCAGGGCTCCTaGCATGACACGAACATGTTT | + |
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Preference number: 4 (lower is better) Translates to: SAQPDKGLAEKGVGLCQSTFQGS*HDTNMF Trigger: AAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGT...GCTCTGGCAGAGGCCCACTCCTTTCTCAGCCAGGCCTTTGTCTGGCTGTGCGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR GCA 90 bp | GGGGTGCCTTCCTGTGCAGCCTCCAATCACAGGGTCCTGAGGCCCATGAATACTACCTTCCAGGGCTCCTaGCATGACACGAACATGTTT | + |
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Preference number: 4 (lower is better) Translates to: GVPSCAASNHRVLRPMNTTFQGS*HDTNMF Trigger: AAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGT...AGTATTCATGGGCCTCAGGACCCTGTGATTGGAGGCTGCACAGGAAGGCACCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR GCA 90 bp | AAGGCCTGGCTGAGAAAGGAGTGGGCCTCTGCCAGAGCTCTTCCTGTAAGGGGTCTCGAAGAAGACTTCTaGAGCTCGCTCCCGGTTTTT | + |
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Preference number: 4 (lower is better) Translates to: KAWLRKEWASARALPVRGLEEDF*SSLPVF Trigger: AAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAG...ACCCCTTACAGGAAGAGCTCTGGCAGAGGCCCACTCCTTTCTCAGCCAGGCCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR GCA 90 bp | GGGGTGCCTTCCTGTGCAGCCTCCAATCACAGGGTCCTGAGGCCCATGAATACTCTCGAAGAAGACTTCTaGAGCTCGCTCCCGGTTTTT | + |
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Preference number: 4 (lower is better) Translates to: GVPSCAASNHRVLRPMNTLEEDF*SSLPVF Trigger: AAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAG...AGTATTCATGGGCCTCAGGACCCTGTGATTGGAGGCTGCACAGGAAGGCACCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR GCA 90 bp | GGGGTGCCTTCCTGTGCAGCCTCCAATCACAGGGTCCTGAGGCCCATGAATACTCAGTCTCTCCTGGGGTaGAGATATCCTGATCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: GVPSCAASNHRVLRPMNTQSLLG*RYPDLH Trigger: GTGAAGATCAGGATATCTGCACCCCAGGAGAGACTG...AGTATTCATGGGCCTCAGGACCCTGTGATTGGAGGCTGCACAGGAAGGCACCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040270.6 |
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| 3UTR CAA 72 bp | GGTTCCCAGGTGGACACGAGTGTACCCTGCTCTCTCTaGAACCCAGTCTCTAACCACGGCCAGACTGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: GSQVDTSVPCSL*NPVSNHGQTAF Trigger: AAAAGCAGTCTGGCCGTGGTTAGAGACTGGGTTCAAGAGAGAGCAGGGTACACTCGTGTCCACCTGGGAACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR CCA 90 bp | CCTGAAGCTATCTCCTGTCCTCAAATGCCCAGTGTGGTCCTAATCCCTACCTGGAAGGGCCAATCTCAATaGTGCTGCCATCGGGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: PEAISCPQMPSVVLIPTWKGQSQ*CCHRAG Trigger: ACCTGCCCGATGGCAGCACCATTGAGATTGGCCCTT...CCAGGTAGGGATTAGGACCACACTGGGCATTTGAGGACAGGAGATAGCTTCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR TCA 90 bp | CCTCTGCCACAGAGAGATGCTACTTTCTGTCTTAGAAAATCCAACCACAACCAGCATGGGGTAACGGATTaGCAGCAGCCCCCGGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: PLPQRDATFCLRKSNHNQHGVTD*QQPPVL Trigger: GAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATG...CTGGTTGTGGTTGGATTTTCTAAGACAGAAAGTAGCATCTCTCTGTGGCAGAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR GCA 90 bp | GTCATAGGATGGCGGAGAAAGAATACTGTCTGGAATCTGGAACTGAGGCGAGACCCACGCCTGTGGTTCTaGCCGTGGCATAAAGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: VIGWRRKNTVWNLELRRDPRLWF*PWHKGS Trigger: TGAGCCTTTATGCCACGGGCAGAACCACAGGCGTGG...GTCTCGCCTCAGTTCCAGATTCCAGACAGTATTCTTTCTCCGCCATCCTATGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR CCA 90 bp | ACACCACGCCTGTGGTTCTGCCCGTGGCATAAAGGCTCAGCACGGCTTGCATGGGCACAGGATGTAGTTTaGAAAGCAGTATTTGGGGAT | + |
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Preference number: 4 (lower is better) Translates to: TPRLWFCPWHKGSARLAWAQDVV*KAVFGD Trigger: ATCCCCAAATACTGCTTTCCAAACTACATCCTGTGC...CCATGCAAGCCGTGCTGAGCCTTTATGCCACGGGCAGAACCACAGGCGTGGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237477.2 |
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| CDS-3UTR GCA 90 bp | TACATCTGGCAGGGACCTTTGGTCATAGGATGGCGGAGAAAGAATACTGTCTGGGGCCAATCTCAATGGTaGTGCCATCGGGCAGGTAGT | + |
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Preference number: 4 (lower is better) Translates to: YIWQGPLVIGWRRKNTVWGQSQW*CHRAGS Trigger: ACTACCTGCCCGATGGCAGCACCATTGAGATTGGCC...CCAGACAGTATTCTTTCTCCGCCATCCTATGACCAAAGGTCCCTGCCAGATGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR CCA 90 bp | GTCATAGGATGGCGGAGAAAGAATACTGTCTGGAATCTGGAACTGAGGCGAGACAAGGGCCAATCTCAATaGTGCTGCCATCGGGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: VIGWRRKNTVWNLELRRDKGQSQ*CCHRAG Trigger: ACCTGCCCGATGGCAGCACCATTGAGATTGGCCCTT...GTCTCGCCTCAGTTCCAGATTCCAGACAGTATTCTTTCTCCGCCATCCTATGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR CCA 90 bp | TCTCTAACCACGGCCAGACTGCTTTTTCAGTCTCCCAAACCCAAACTGAAACAACTGTGGTTCTGCCCGTaGCATAAAGGCTCAGCACGG | + |
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Preference number: 4 (lower is better) Translates to: SLTTARLLFQSPKPKLKQLWFCP*HKGSAR Trigger: CCGTGCTGAGCCTTTATGCCACGGGCAGAACCACAG...TTGTTTCAGTTTGGGTTTGGGAGACTGAAAAAGCAGTCTGGCCGTGGTTAGAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR CAA 72 bp | CACACACCAGCTTCGCTTTACATCTGGCAGGGACCTTaGGTCATAGGATGGCGGAGAAAGAATACTGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: HTPASLYIWQGP*VIGWRRKNTVW Trigger: CCAGACAGTATTCTTTCTCCGCCATCCTATGACCAAAGGTCCCTGCCAGATGTAAAGCGAAGCTGGTGTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR TCA 90 bp | TACATCTGGCAGGGACCTTTGGTCATAGGATGGCGGAGAAAGAATACTGTCTGGCAGGGTAGAACCTCCTaGGAGGACAATGTTGGAAAA | + |
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Preference number: 4 (lower is better) Translates to: YIWQGPLVIGWRRKNTVWQGRTS*EDNVGK Trigger: TTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTG...CCAGACAGTATTCTTTCTCCGCCATCCTATGACCAAAGGTCCCTGCCAGATGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| 3UTR CAA 72 bp | AGCTTTAATCACACCGGATCCTTGCTGTTCTTGTACTaGCTGTTCTTCTGGAGGGCTGGAGTCAGGTTCCTA | + |
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Preference number: 4 (lower is better) Translates to: SFNHTGSLLFLY*LFFWRAGVRFL Trigger: TAGGAACCTGACTCCAGCCCTCCAGAAGAACAGCAAGTACAAGAACAGCAAGGATCCGGTGTGATTAAAGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235752.2 |
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| CDS CCA 90 bp | GCTCGCAACCACCACTCCAGCTCCAGGGATCCAAGGCAGGGGAGCTaGTGGGAGGGGCAGACTGCTTCTGCACTGCTAATGCCAACGCAA | + |
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Preference number: 5 (lower is better) Translates to: ARNHHSSSRDPRQGS*WEGQTASALLMPTQ Trigger: TTGCGTTGGCATTAGCAGTGCAGAAGCAGTCTGCCCCTCCCACCAGCTCCCCTGCCTTGGATCCCTGGAGCTGGAGTGGTGGTTGCGAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235752.2 |
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| CDS-3UTR CAA 90 bp | AAGGCCTGGCTGAGAAAGGAGTGGGCCTCTGCCAGAGCTCTTCCTGTAAGGGGTCCATGGGGTAACGGATaGACAGCAGCCCCCGGTGCT | + |
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Preference number: 5 (lower is better) Translates to: KAWLRKEWASARALPVRGPWGNG*TAAPGA Trigger: AGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGG...ACCCCTTACAGGAAGAGCTCTGGCAGAGGCCCACTCCTTTCTCAGCCAGGCCTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR CAA 90 bp | GGGGTGCCTTCCTGTGCAGCCTCCAATCACAGGGTCCTGAGGCCCATGAATACTCCATGGGGTAACGGATaGACAGCAGCCCCCGGTGCT | + |
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Preference number: 5 (lower is better) Translates to: GVPSCAASNHRVLRPMNTPWGNG*TAAPGA Trigger: AGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGG...AGTATTCATGGGCCTCAGGACCCTGTGATTGGAGGCTGCACAGGAAGGCACCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR CAA 90 bp | TCCGCACAGCCAGACAAAGGCCTGGCTGAGAAAGGAGTGGGCCTCTGCCAGAGCGTCTGCCCACATAGTTaGGAAAGCAGTATTTGGGGA | + |
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Preference number: 5 (lower is better) Translates to: SAQPDKGLAEKGVGLCQSVCPHS*ESSIWG Trigger: TCCCCAAATACTGCTTTCCAAACTATGTGGGCAGAC...GCTCTGGCAGAGGCCCACTCCTTTCTCAGCCAGGCCTTTGTCTGGCTGTGCGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR CAA 90 bp | CCTTCCGTAGGTAGAGGCGGAGGAAGCGTGAGACATCCCGGCCAGCGATGTCGAAGCACAGGATGTAGTTaGGAAAGCAGTATTTGGGGA | + |
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Preference number: 5 (lower is better) Translates to: PSVGRGGGSVRHPGQRCRSTGCS*ESSIWG Trigger: TCCCCAAATACTGCTTTCCAAACTACATCCTGTGCT...TCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237477.2 |
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| CDS-3UTR CAA 90 bp | GTCATAGGATGGCGGAGAAAGAATACTGTCTGGAATCTGGAACTGAGGCGAGACCCTGAGAGGACAATGTaGGAAAACAGTGTACGCCGT | + |
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Preference number: 5 (lower is better) Translates to: VIGWRRKNTVWNLELRRDPERTM*ENSVRR Trigger: ACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGG...GTCTCGCCTCAGTTCCAGATTCCAGACAGTATTCTTTCTCCGCCATCCTATGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR CAA 90 bp | TGGTTAACTGCAGCTTGCTTTGTTTTAAAGGGTCTAGATCTCCAACACACCTCCGTCTGCCCACATAGTTaGGAAAGCAGTATTTGGGGA | + |
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Preference number: 5 (lower is better) Translates to: WLTAACFVLKGLDLQHTSVCPHS*ESSIWG Trigger: TCCCCAAATACTGCTTTCCAAACTATGTGGGCAGAC...GGAGGTGTGTTGGAGATCTAGACCCTTTAAAACAAAGCAAGCTGCAGTTAACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040270.6 ENSMUST00000237742.2 |
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| CDS-3UTR CAA 90 bp | TGGTTAACTGCAGCTTGCTTTGTTTTAAAGGGTCTAGATCTCCAACACACCTCCCTGTCTCCAAAACCTTaGAACAGGGTAGAACCTCCT | + |
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Preference number: 5 (lower is better) Translates to: WLTAACFVLKGLDLQHTSLSPKP*NRVEPP Trigger: AGGAGGTTCTACCCTGTTCAAAGGTTTTGGAGACAG...GGAGGTGTGTTGGAGATCTAGACCCTTTAAAACAAAGCAAGCTGCAGTTAACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040270.6 |
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