Pregenerated sensors for ACTN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015143Ensembl transcript IDs: ENSMUST00000021554.16, ENSMUST00000167327.2
Found 97 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAAGGTGGGCAGGGAGGCTTaGTGCCGCCTGGGTCGGAGC | + |
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Preference number: 2 (lower is better) Translates to: HTCTNVPLMRVPTYPTPKVGREA*CRLGRS Trigger: GCTCCGACCCAGGCGGCATCAAGCCTCCCTGCCCAC...CTTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| 3UTR-3UTR CCA 90 bp | ATACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGAGGAGGAGCAGGGTaGGGCGCACGCGCAGAAGGC | + |
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Preference number: 2 (lower is better) Translates to: IQSVPSNIIISKFVLSLIGGGAG*GARAEG Trigger: GCCTTCTGCGCGTGCGCCCCACCCTGCTCCTCCTCC...TATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| 3UTR-3UTR GCA 90 bp | ACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGGCTAGCAAACACACATaGACCAATGTGCCTCTGATG | + |
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Preference number: 2 (lower is better) Translates to: TVCAKQHHNLQVCPIFNRASKHT*TNVPLM Trigger: CATCAGAGGCACATTGGTGCATGTGTGTTTGCTAGC...CCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| 3UTR-3UTR CAA 90 bp | CAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGCTGTGGGCAGGGAGGCTaGATGCCGCCTGGGTCGGAG | + |
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Preference number: 3 (lower is better) Translates to: QSVPSNIIISKFVLSLIGCGQGG*MPPGSE Trigger: CTCCGACCCAGGCGGCATCAAGCCTCCCTGCCCACA...GCCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| 3UTR-3UTR CAA 90 bp | CAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGCCGGAGCTCTGCCCCCTaGGTGGCTGAGCTGAAAATA | + |
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Preference number: 3 (lower is better) Translates to: QSVPSNIIISKFVLSLIGRSSAP*VAELKI Trigger: TATTTTCAGCTCAGCCACCAAGGGGGCAGAGCTCCG...GCCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR TCA 90 bp | ACTTTGTGGGCAGGGAGGCTTGATGCCGCCTGGGTCGGAGCTCTGCCCCCTTGGGCTTCCCTCCGCTTCTaGGTGAGAGCCCCTAGATTG | + |
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Preference number: 4 (lower is better) Translates to: TLWAGRLDAAWVGALPPWASLRF*VRAPRL Trigger: CAATCTAGGGGCTCTCACTCAGAAGCGGAGGGAAGC...CCAAGGGGGCAGAGCTCCGACCCAGGCGGCATCAAGCCTCCCTGCCCACAAAGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR TCA 90 bp | ACTTTGTGGGCAGGGAGGCTTGATGCCGCCTGGGTCGGAGCTCTGCCCCCTTGGCGATGGTATGTACGATaGAGGTGTCCTGCAGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: TLWAGRLDAAWVGALPPWRWYVR*RCPAGP Trigger: AGGACCTGCAGGACACCTTCATCGTACATACCATCG...CCAAGGGGGCAGAGCTCCGACCCAGGCGGCATCAAGCCTCCCTGCCCACAAAGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR TCA 90 bp | ACTTTGTGGGCAGGGAGGCTTGATGCCGCCTGGGTCGGAGCTCTGCCCCCTTGGTGGTGCCTGCCATGTTaGCATGATAGGTCTGGACGA | + |
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Preference number: 4 (lower is better) Translates to: TLWAGRLDAAWVGALPPWWCLPC*HDRSGR Trigger: TCGTCCAGACCTATCATGTCAACATGGCAGGCACCA...CCAAGGGGGCAGAGCTCCGACCCAGGCGGCATCAAGCCTCCCTGCCCACAAAGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR GCA 90 bp | ACTTTGTGGGCAGGGAGGCTTGATGCCGCCTGGGTCGGAGCTCTGCCCCCTTGGTTCTGCTGCATGGCATaGATGGTGTTCTCAGGCACC | + |
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Preference number: 4 (lower is better) Translates to: TLWAGRLDAAWVGALPPWFCCMA*MVFSGT Trigger: GGTGCCTGAGAACACCATGCATGCCATGCAGCAGAA...CCAAGGGGGCAGAGCTCCGACCCAGGCGGCATCAAGCCTCCCTGCCCACAAAGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | ACTTTGTGGGCAGGGAGGCTTGATGCCGCCTGGGTCGGAGCTCTGCCCCCTTGGAATGGCTTTCTCATCTaGCCGGGCAGTTCCGACGAT | + |
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Preference number: 4 (lower is better) Translates to: TLWAGRLDAAWVGALPPWNGFLI*PGSSDD Trigger: ATCGTCGGAACTGCCCGGCCAGATGAGAAAGCCATT...CCAAGGGGGCAGAGCTCCGACCCAGGCGGCATCAAGCCTCCCTGCCCACAAAGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | ACTTTGTGGGCAGGGAGGCTTGATGCCGCCTGGGTCGGAGCTCTGCCCCCTTGGCCAGCTTCTGCTGCATaGCATGCATGGTGTTCTCAG | + |
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Preference number: 4 (lower is better) Translates to: TLWAGRLDAAWVGALPPWPASAA*HAWCSQ Trigger: CTGAGAACACCATGCATGCCATGCAGCAGAAGCTGG...CCAAGGGGGCAGAGCTCCGACCCAGGCGGCATCAAGCCTCCCTGCCCACAAAGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR TCA 90 bp | ACTTTGTGGGCAGGGAGGCTTGATGCCGCCTGGGTCGGAGCTCTGCCCCCTTGGGGTCTACAATGCTCATaGTTCGGGCAAACTCTGCCT | + |
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Preference number: 4 (lower is better) Translates to: TLWAGRLDAAWVGALPPWGLQCS*FGQTLP Trigger: AGGCAGAGTTTGCCCGAATCATGAGCATTGTAGACC...CCAAGGGGGCAGAGCTCCGACCCAGGCGGCATCAAGCCTCCCTGCCCACAAAGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR GCA 90 bp | TTGGTGGCTGAGCTGAAAATAATGAACCCAGCCAGCCAGACTGGGCGGAGGAGGGAGGCGCTCCTTGTCTaGATCCGGGAGGGTGGCCTT | + |
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Preference number: 4 (lower is better) Translates to: LVAELKIMNPASQTGRRREALLV*IREGGL Trigger: AAGGCCACCCTCCCGGATGCAGACAAGGAGCGCCTC...CCTCCTCCGCCCAGTCTGGCTGGCTGGGTTCATTATTTTCAGCTCAGCCACCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR GCA 90 bp | ACTTTGTGGGCAGGGAGGCTTGATGCCGCCTGGGTCGGAGCTCTGCCCCCTTGGCTCTCATTGTGCTGCTaGCTTGCATGTTCCTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: TLWAGRLDAAWVGALPPWLSLCC*LACSSV Trigger: CACAGAGGAACATGCAAGGCAGCAGCACAATGAGAG...CCAAGGGGGCAGAGCTCCGACCCAGGCGGCATCAAGCCTCCCTGCCCACAAAGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | ACTTTGTGGGCAGGGAGGCTTGATGCCGCCTGGGTCGGAGCTCTGCCCCCTTGGTCGTTCATCTGTTCCTaGCTGATGCCTTTGGCATCC | + |
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Preference number: 4 (lower is better) Translates to: TLWAGRLDAAWVGALPPWSFICS*LMPLAS Trigger: GGATGCCAAAGGCATCAGCCAGGAACAGATGAACGA...CCAAGGGGGCAGAGCTCCGACCCAGGCGGCATCAAGCCTCCCTGCCCACAAAGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR TCA 90 bp | TTGGTGGCTGAGCTGAAAATAATGAACCCAGCCAGCCAGACTGGGCGGAGGAGGGGCCAAGCGTTCACCTaGGATGACCTCCAGGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: LVAELKIMNPASQTGRRRGQAFT*DDLQEQ Trigger: CTGCTCCTGGAGGTCATCTCAGGTGAACGCTTGGCC...CCTCCTCCGCCCAGTCTGGCTGGCTGGGTTCATTATTTTCAGCTCAGCCACCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR TCA 90 bp | ACACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAACCCTCCGCTTCTGAGTaGGAGCCCCTAGATTGTCCC | + |
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Preference number: 4 (lower is better) Translates to: THMHQCASDESTHLPHPQPSASE*EPLDCP Trigger: GGGACAATCTAGGGGCTCTCACTCAGAAGCGGAGGG...TTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR GCA 90 bp | CACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAAGGTGAACGTCTTCCTCTaGTGCTTCTCCCAGGCCGGA | + |
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Preference number: 4 (lower is better) Translates to: HTCTNVPLMRVPTYPTPKVNVFL*CFSQAG Trigger: TCCGGCCTGGGAGAAGCAGCAGAGGAAGACGTTCAC...CTTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | TTGGTGGCTGAGCTGAAAATAATGAACCCAGCCAGCCAGACTGGGCGGAGGAGGACTGCTCATGGGCTGTaGTCAGTCCCTGGATCTCCT | + |
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Preference number: 4 (lower is better) Translates to: LVAELKIMNPASQTGRRRTAHGL*SVPGSP Trigger: AGGAGATCCAGGGACTGACCACAGCCCATGAGCAGT...CCTCCTCCGCCCAGTCTGGCTGGCTGGGTTCATTATTTTCAGCTCAGCCACCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR TCA 90 bp | ACTTTGTGGGCAGGGAGGCTTGATGCCGCCTGGGTCGGAGCTCTGCCCCCTTGGTCTTTGGCTTGTAATTaGCGATGCTCTTCTCATACT | + |
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Preference number: 4 (lower is better) Translates to: TLWAGRLDAAWVGALPPWSLACN*RCSSHT Trigger: AGTATGAGAAGAGCATCGTCAATTACAAGCCAAAGA...CCAAGGGGGCAGAGCTCCGACCCAGGCGGCATCAAGCCTCCCTGCCCACAAAGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR GCA 90 bp | TTGGTGGCTGAGCTGAAAATAATGAACCCAGCCAGCCAGACTGGGCGGAGGAGGCGTAGCCTCTCATTGTaGTGCTGCCTTGCATGTTCC | + |
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Preference number: 4 (lower is better) Translates to: LVAELKIMNPASQTGRRRRSLSL*CCLACS Trigger: GGAACATGCAAGGCAGCAGCACAATGAGAGGCTACG...CCTCCTCCGCCCAGTCTGGCTGGCTGGGTTCATTATTTTCAGCTCAGCCACCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | ACACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAATGCCTCTCTCTGGCTTaGCCAAGCGTTCACCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: THMHQCASDESTHLPHPQCLSLA*PSVHLR Trigger: TCTCAGGTGAACGCTTGGCCAAGCCAGAGAGAGGCA...TTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | TTGGTGGCTGAGCTGAAAATAATGAACCCAGCCAGCCAGACTGGGCGGAGGAGGAGCTCATTAAGCTCCTaGGCAATGGCCGCAATCTGC | + |
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Preference number: 4 (lower is better) Translates to: LVAELKIMNPASQTGRRRSSLSS*AMAAIC Trigger: GCAGATTGCGGCCATTGCCCAGGAGCTTAATGAGCT...CCTCCTCCGCCCAGTCTGGCTGGCTGGGTTCATTATTTTCAGCTCAGCCACCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | TTGGTGGCTGAGCTGAAAATAATGAACCCAGCCAGCCAGACTGGGCGGAGGAGGAAGTCGATGAAGGCCTaGAACGTCACTACCCCCAAG | + |
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Preference number: 4 (lower is better) Translates to: LVAELKIMNPASQTGRRRKSMKA*NVTTPK Trigger: CTTGGGGGTAGTGACGTTCCAGGCCTTCATCGACTT...CCTCCTCCGCCCAGTCTGGCTGGCTGGGTTCATTATTTTCAGCTCAGCCACCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | ACACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAAAGGGTGCAGCCCTCTTaGCGTACTCTAAGTAGAGCT | + |
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Preference number: 4 (lower is better) Translates to: THMHQCASDESTHLPHPQRVQPS*RTLSRA Trigger: AGCTCTACTTAGAGTACGCCAAGAGGGCTGCACCCT...TTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | ACACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAAAACTCTGCCTCTCCCTaGGGGTCGTTGCCAATATCA | + |
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Preference number: 4 (lower is better) Translates to: THMHQCASDESTHLPHPQNSASP*GSLPIS Trigger: TGATATTGGCAACGACCCCCAGGGAGAGGCAGAGTT...TTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | CACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAAGCGCCATACAGTGCCGTaGAGAAGGACATGTAGTCTA | + |
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Preference number: 4 (lower is better) Translates to: HTCTNVPLMRVPTYPTPKRHTVP*RRTCSL Trigger: TAGACTACATGTCCTTCTCCACGGCACTGTATGGCG...CTTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR GCA 90 bp | ACACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAACTCTCAAAAGCCTCGTaGTTCTTGAGCAAGGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: THMHQCASDESTHLPHPQLSKAS*FLSKAL Trigger: CAAGGCCTTGCTCAAGAAGCACGAGGCTTTTGAGAG...TTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | ACACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAAACGAGCGTTGACACTTaGCGAGTCATAGTAGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: THMHQCASDESTHLPHPQTSVDT*RVIVVQ Trigger: CTGGACTACTATGACTCGCCAAGTGTCAACGCTCGT...TTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | CACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAAGACTAGCTGCCGTACATaGTCCCATTTGCCATTGATC | + |
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Preference number: 4 (lower is better) Translates to: HTCTNVPLMRVPTYPTPKTSCRT*SHLPLI Trigger: GATCAATGGCAAATGGGACCATGTACGGCAGCTAGT...CTTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR TCA 90 bp | CACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAAGAAGGAAGCCATGACCTaGTCTGCAGTATCAGTATCT | + |
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Preference number: 4 (lower is better) Translates to: HTCTNVPLMRVPTYPTPKKEAMT*SAVSVS Trigger: AGATACTGATACTGCAGATCAGGTCATGGCTTCCTT...CTTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR TCA 90 bp | CACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAAGGCAGCTCATCCTCTGTaGTGTAATTCTTATCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: HTCTNVPLMRVPTYPTPKAAHPL*CNSYLQ Trigger: CTGGAGATAAGAATTACATCACAGAGGATGAGCTGC...CTTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR GCA 90 bp | ACACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAAATAGGGGTTGGTGCCTaGCATGTTGACATGATAGGT | + |
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Preference number: 4 (lower is better) Translates to: THMHQCASDESTHLPHPQIGVGA*HVDMIG Trigger: ACCTATCATGTCAACATGGCAGGCACCAACCCCTAT...TTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | ACACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAACTTTGCAGATGCGATTaGCTGCTGTTTCTGCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: THMHQCASDESTHLPHPQLCRCD*LLFLPS Trigger: AGAAGGCAGAAACAGCAGCCAATCGCATCTGCAAAG...TTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | CACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAAGACTCCAACAGATCACTaGCCAGCTTCTCATAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: HTCTNVPLMRVPTYPTPKTPTDH*PASHSL Trigger: AAGACTATGAGAAGCTGGCCAGTGATCTGTTGGAGT...CTTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR TCA 90 bp | CAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGCCCGGGAGGGTGGCCTTaGACTGCTCATGGGCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: QSVPSNIIISKFVLSLIGPGGWP*TAHGLW Trigger: CCACAGCCCATGAGCAGTTCAAGGCCACCCTCCCGG...GCCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR TCA 90 bp | ACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGTTGCATGTTCCTCTGTaGGAGCCTGGTCCCTCCGGG | + |
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Preference number: 4 (lower is better) Translates to: TVCAKQHHNLQVCPIFNRLHVPL*EPGPSG Trigger: CCCGGAGGGACCAGGCTCTCACAGAGGAACATGCAA...CCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR GCA 90 bp | CAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGCGCAGATGCGATTGGCTaGTGTTTCTGCCTTCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: QSVPSNIIISKFVLSLIGADAIG*CFCLLG Trigger: GCCCAGAAGGCAGAAACAGCAGCCAATCGCATCTGC...GCCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | ACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGTGTGGATGCCCAGAATaGCGAGGCGCTCCTTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: TVCAKQHHNLQVCPIFNRCGCPE*RGAPCL Trigger: CAGACAAGGAGCGCCTCGCCATTCTGGGCATCCACA...CCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | ATACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATATCCTCTGTGAGAGCCTaGTCCCTCCGGGGCACTAGC | + |
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Preference number: 4 (lower is better) Translates to: IQSVPSNIIISKFVLSLISSVRA*SLRGTS Trigger: GCTAGTGCCCCGGAGGGACCAGGCTCTCACAGAGGA...TATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR GCA 90 bp | CAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGCTGTGCACTCTCATCTTaGCTCTCTCTGGCTTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: QSVPSNIIISKFVLSLIGCALSS*LSLAWP Trigger: TGGCCAAGCCAGAGAGAGGCAAGATGAGAGTGCACA...GCCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR GCA 90 bp | CAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGCCTCCCTGGGGGTCGTTaGCAATATCATAACCCAAGC | + |
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Preference number: 4 (lower is better) Translates to: QSVPSNIIISKFVLSLIGLPGGR*QYHNPS Trigger: GCTTGGGTTATGATATTGGCAACGACCCCCAGGGAG...GCCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | ACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGCATCTTGCCTCTCTCTaGCTTGGCCAAGCGTTCACC | + |
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Preference number: 4 (lower is better) Translates to: TVCAKQHHNLQVCPIFNRHLASL*LGQAFT Trigger: GGTGAACGCTTGGCCAAGCCAGAGAGAGGCAAGATG...CCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | ACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGGCTGCATGGCATGCATaGTGTTCTCAGGCACCCGAT | + |
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Preference number: 4 (lower is better) Translates to: TVCAKQHHNLQVCPIFNRAAWHA*CSQAPD Trigger: ATCGGGTGCCTGAGAACACCATGCATGCCATGCAGC...CCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | ACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGCCTTCTGCCGAAGCATaGCTTCTTTGCCATCCGTCC | + |
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Preference number: 4 (lower is better) Translates to: TVCAKQHHNLQVCPIFNRPSAEA*LLCHPS Trigger: GGACGGATGGCAAAGAAGCCATGCTTCGGCAGAAGG...CCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR TCA 90 bp | ATACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATATCATCTGTTCCTGGCTaGTGCCTTTGGCATCCCGGG | + |
|
Preference number: 4 (lower is better) Translates to: IQSVPSNIIISKFVLSLISSVPG*CLWHPG Trigger: CCCGGGATGCCAAAGGCATCAGCCAGGAACAGATGA...TATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR GCA 90 bp | CAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGCGAAGCATGGCTTCTTTaGCATCCGTCCAGGCTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: QSVPSNIIISKFVLSLIGEAWLL*HPSRLH Trigger: ATGAAGCCTGGACGGATGGCAAAGAAGCCATGCTTC...GCCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
||
| CDS-3UTR GCA 90 bp | ACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGACACTTCATTGTGGATaGCCAGAATGGCGAGGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: TVCAKQHHNLQVCPIFNRTLHCG*PEWRGA Trigger: AGCGCCTCGCCATTCTGGGCATCCACAATGAAGTGT...CCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | CAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGCAGTAGAGCTGGTCGATaGTTTCCAGCAGCTTCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: QSVPSNIIISKFVLSLIGSRAGR*FPAASL Trigger: CAGAGAAGCTGCTGGAAACCATCGACCAGCTCTACT...GCCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR TCA 90 bp | CAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGCAATCCAAGGCCTTGTTaGCGTTGGAGATCTTGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: QSVPSNIIISKFVLSLIGNPRPC*RWRSCA Trigger: TGCACAAGATCTCCAACGTCAACAAGGCCTTGGATT...GCCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR TCA 90 bp | ATACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATACCCGGTCAAAGTGGTTaGAAGAGGCGCGGAATTCGT | + |
|
Preference number: 4 (lower is better) Translates to: IQSVPSNIIISKFVLSLIPGQSG*KRRGIR Trigger: ACGAATTCCGCGCCTCTTTCAACCACTTTGACCGGG...TATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
||
| CDS-3UTR GCA 90 bp | ACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGAGCCTCTCATTGTGCTaGTGCCTTGCATGTTCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: TVCAKQHHNLQVCPIFNRSLSLC*CLACSS Trigger: AGAGGAACATGCAAGGCAGCAGCACAATGAGAGGCT...CCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR GCA 90 bp | ACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGGTGCGCCAAACTGTTTaGGTAGCCTCTCATTGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: TVCAKQHHNLQVCPIFNRVRQTV*VASHCA Trigger: AGCACAATGAGAGGCTACGCAAACAGTTTGGCGCAC...CCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | CAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGCTCCCGGGTCAAGATCTaGTTCTCCACTTCATTGATG | + |
|
Preference number: 4 (lower is better) Translates to: QSVPSNIIISKFVLSLIGSRVKI*FSTSLM Trigger: CATCAATGAAGTGGAGAACCAGATCTTGACCCGGGA...GCCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR GCA 90 bp | ACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGACGTTGGAGATCTTGTaGACTCTCATCTTGCCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: TVCAKQHHNLQVCPIFNRTLEIL*TLILPL Trigger: GAGAGGCAAGATGAGAGTGCACAAGATCTCCAACGT...CCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR GCA 90 bp | ACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGCCAACACTTTGCAGATaGGATTGGCTGCTGTTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: TVCAKQHHNLQVCPIFNRPTLCR*DWLLFL Trigger: CAGAAACAGCAGCCAATCGCATCTGCAAAGTGTTGG...CCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
||
| CDS-3UTR GCA 90 bp | ATACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAATGCTCTTCTCATACTaGCGCAGGTGGCTGAGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: IQSVPSNIIISKFVLSLIMLFSY*RRWLSW Trigger: CCAACTCAGCCACCTGCGGCAGTATGAGAAGAGCAT...TATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
||
| CDS-3UTR CCA 90 bp | ATACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATATCCACGGAGATGTCCTaGATGGCAAAGCGGAGAATG | + |
|
Preference number: 4 (lower is better) Translates to: IQSVPSNIIISKFVLSLISTEMS*MAKRRM Trigger: CATTCTCCGCTTTGCCATCCAGGACATCTCCGTGGA...TATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | ACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGGCTGCATGTAGTCGTTaGTCTGCTGGGAATCATAAT | + |
|
Preference number: 4 (lower is better) Translates to: TVCAKQHHNLQVCPIFNRAACSR*SAGNHN Trigger: ATTATGATTCCCAGCAGACCAACGACTACATGCAGC...CCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
||
| CDS-3UTR CCA 90 bp | ATACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAAGGTCTGGACGATCTTaGACACTTCATTGTGGATGC | + |
|
Preference number: 4 (lower is better) Translates to: IQSVPSNIIISKFVLSLIRSGRS*TLHCGC Trigger: GCATCCACAATGAAGTGTCCAAGATCGTCCAGACCT...TATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | ACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGGTTGACATTTTTATATaGGGCTGTCTTCCTCTGACA | + |
|
Preference number: 4 (lower is better) Translates to: TVCAKQHHNLQVCPIFNRVDIFI*GCLPLT Trigger: TGTCAGAGGAAGACAGCCCCATATAAAAATGTCAAC...CCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CCA 90 bp | ATACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATACAGCTGGTCAATCTTTaGCTTGTAATTGACGATGCT | + |
|
Preference number: 4 (lower is better) Translates to: IQSVPSNIIISKFVLSLIQLVNL*LVIDDA Trigger: AGCATCGTCAATTACAAGCCAAAGATTGACCAGCTG...TATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGTAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CAA 90 bp | ACTTTGTGGGCAGGGAGGCTTGATGCCGCCTGGGTCGGAGCTCTGCCCCCTTGGTTGCCTCTCTCTGGCTaGGCCAAGCGTTCACCTGAG | + |
|
Preference number: 5 (lower is better) Translates to: TLWAGRLDAAWVGALPPWLPLSG*AKRSPE Trigger: CTCAGGTGAACGCTTGGCCAAGCCAGAGAGAGGCAA...CCAAGGGGGCAGAGCTCCGACCCAGGCGGCATCAAGCCTCCCTGCCCACAAAGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
||
| CDS TCA 90 bp | CCAGAATGGCGAGGCGCTCCTTGTCTGCATCCGGGAGGGTGGCCTTaGACTGCTCATGGGCTGTGGTCAGTCCCTGGATCTCCTCGATGG | + |
|
Preference number: 5 (lower is better) Translates to: PEWRGAPCLHPGGWP*TAHGLWSVPGSPRW Trigger: CCATCGAGGAGATCCAGGGACTGACCACAGCCCATGAGCAGTTCAAGGCCACCCTCCCGGATGCAGACAAGGAGCGCCTCGCCATTCTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021554.16 ENSMUST00000167327.2 |
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| CDS CCA 90 bp | AGCCTCTCATTGTGCTGCTGCCTTGCATGTTCCTCTGTGAGAGCCTaGTCCCTCCGGGGCACTAGCTGCCGTACATGGTCCCATTTGCCA | + |
|
Preference number: 5 (lower is better) Translates to: SLSLCCCLACSSVRA*SLRGTSCRTWSHLP Trigger: TGGCAAATGGGACCATGTACGGCAGCTAGTGCCCCGGAGGGACCAGGCTCTCACAGAGGAACATGCAAGGCAGCAGCACAATGAGAGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021554.16 ENSMUST00000167327.2 |
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| CDS GCA 90 bp | TTGGCTTGTGCGCCAAACTGTTTGCGTAGCCTCTCATTGTGCTGCTaGCTTGCATGTTCCTCTGTGAGAGCCTGGTCCCTCCGGGGCACT | + |
|
Preference number: 5 (lower is better) Translates to: LACAPNCLRSLSLCC*LACSSVRAWSLRGT Trigger: AGTGCCCCGGAGGGACCAGGCTCTCACAGAGGAACATGCAAGGCAGCAGCACAATGAGAGGCTACGCAAACAGTTTGGCGCACAAGCCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021554.16 ENSMUST00000167327.2 |
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| CDS GCA 90 bp | ACATTGGCTTGTGCGCCAAACTGTTTGCGTAGCCTCTCATTGTGCTaGTGCCTTGCATGTTCCTCTGTGAGAGCCTGGTCCCTCCGGGGC | + |
|
Preference number: 5 (lower is better) Translates to: TLACAPNCLRSLSLC*CLACSSVRAWSLRG Trigger: GCCCCGGAGGGACCAGGCTCTCACAGAGGAACATGCAAGGCAGCAGCACAATGAGAGGCTACGCAAACAGTTTGGCGCACAAGCCAATGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021554.16 ENSMUST00000167327.2 |
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| CDS GCA 90 bp | ATGACATTGGCTTGTGCGCCAAACTGTTTGCGTAGCCTCTCATTGTaGTGCTGCCTTGCATGTTCCTCTGTGAGAGCCTGGTCCCTCCGG | + |
|
Preference number: 5 (lower is better) Translates to: MTLACAPNCLRSLSL*CCLACSSVRAWSLR Trigger: CCGGAGGGACCAGGCTCTCACAGAGGAACATGCAAGGCAGCAGCACAATGAGAGGCTACGCAAACAGTTTGGCGCACAAGCCAATGTCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021554.16 ENSMUST00000167327.2 |
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| CDS-3UTR CAA 90 bp | CACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAAGTTGACCGCCAACACTTaGCAGATGCGATTGGCTGCT | + |
|
Preference number: 5 (lower is better) Translates to: HTCTNVPLMRVPTYPTPKLTANT*QMRLAA Trigger: AGCAGCCAATCGCATCTGCAAAGTGTTGGCGGTCAA...CTTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CAA 90 bp | ACACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAAAGGCAGCCCCAGGCATaGTTGATATCCGAGACCATC | + |
|
Preference number: 5 (lower is better) Translates to: THMHQCASDESTHLPHPQRQPQA*LISETI Trigger: GATGGTCTCGGATATCAACAATGCCTGGGGCTGCCT...TTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CAA 90 bp | ACACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAAACTACCCCCAAGCGGTaGGGGTCTACAATGCTCATG | + |
|
Preference number: 5 (lower is better) Translates to: THMHQCASDESTHLPHPQTTPKR*GSTMLM Trigger: CATGAGCATTGTAGACCCCAACCGCTTGGGGGTAGT...TTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS TCA 90 bp | CCTGGAACGTCACTACCCCCAAGCGGTTGGGGTCTACAATGCTCATaGTTCGGGCAAACTCTGCCTCTCCCATGTTGTAACCCATGGAGA | + |
|
Preference number: 5 (lower is better) Translates to: PGTSLPPSGWGLQCS*FGQTLPLPCCNPWR Trigger: TCTCCATGGGTTACAACATGGGAGAGGCAGAGTTTGCCCGAATCATGAGCATTGTAGACCCCAACCGCTTGGGGGTAGTGACGTTCCAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000167327.2 |
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| CDS-3UTR CAA 90 bp | TTGGTGGCTGAGCTGAAAATAATGAACCCAGCCAGCCAGACTGGGCGGAGGAGGACTTTGCAGATGCGATaGGCTGCTGTTTCTGCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: LVAELKIMNPASQTGRRRTLQMR*AAVSAF Trigger: GAAGGCAGAAACAGCAGCCAATCGCATCTGCAAAGT...CCTCCTCCGCCCAGTCTGGCTGGCTGGGTTCATTATTTTCAGCTCAGCCACCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CAA 90 bp | CACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAAGAAATCCAAGGCCTTGTaGACGTTGGAGATCTTGTGC | + |
|
Preference number: 5 (lower is better) Translates to: HTCTNVPLMRVPTYPTPKKSKAL*TLEILC Trigger: GCACAAGATCTCCAACGTCAACAAGGCCTTGGATTT...CTTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CAA 90 bp | ACACACATGCACCAATGTGCCTCTGATGAGAGTACCCACCTACCCCACCCCCAAATCTTGGACACTTCATaGTGGATGCCCAGAATGGCG | + |
|
Preference number: 5 (lower is better) Translates to: THMHQCASDESTHLPHPQILDTS*WMPRMA Trigger: CGCCATTCTGGGCATCCACAATGAAGTGTCCAAGAT...TTGGGGGTGGGGTAGGTGGGTACTCTCATCAGAGGCACATTGGTGCATGTGTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CAA 90 bp | TTGGTGGCTGAGCTGAAAATAATGAACCCAGCCAGCCAGACTGGGCGGAGGAGGATGAAATCCAAGGCCTaGTTGACGTTGGAGATCTTG | + |
|
Preference number: 5 (lower is better) Translates to: LVAELKIMNPASQTGRRRMKSKA*LTLEIL Trigger: CAAGATCTCCAACGTCAACAAGGCCTTGGATTTCAT...CCTCCTCCGCCCAGTCTGGCTGGCTGGGTTCATTATTTTCAGCTCAGCCACCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS CCA 90 bp | CAGGAACCTCTCTGCCACATCAAAGGCCGTGTTCAGGTTTGTGAGTaGATCATCCTTTCGAAGCTTTCCATAGTCAATCAACTCGGGCCG | + |
|
Preference number: 5 (lower is better) Translates to: QEPLCHIKGRVQVCE*IILSKLSIVNQLGP Trigger: CGGCCCGAGTTGATTGACTATGGAAAGCTTCGAAAGGATGATCCACTCACAAACCTGAACACGGCCTTTGATGTGGCAGAGAGGTTCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021554.16 ENSMUST00000167327.2 |
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| CDS GCA 90 bp | GCCATTGATCTCCTGAGGCGTGATGGTTGTATAGGGGTTGGTGCCTaGCATGTTGACATGATAGGTCTGGACGATCTTGGACACTTCATT | + |
|
Preference number: 5 (lower is better) Translates to: AIDLLRRDGCIGVGA*HVDMIGLDDLGHFI Trigger: AATGAAGTGTCCAAGATCGTCCAGACCTATCATGTCAACATGGCAGGCACCAACCCCTATACAACCATCACGCCTCAGGAGATCAATGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021554.16 ENSMUST00000167327.2 |
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| CDS-3UTR CAA 90 bp | CAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGCGTGAGAGCCCCTAGATaGTCCCACTGGTCACAGATC | + |
|
Preference number: 5 (lower is better) Translates to: QSVPSNIIISKFVLSLIGVRAPR*SHWSQI Trigger: GATCTGTGACCAGTGGGACAATCTAGGGGCTCTCAC...GCCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CAA 90 bp | ACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGCAGCCCCAGGCATTGTaGATATCCGAGACCATCCTG | + |
|
Preference number: 5 (lower is better) Translates to: TVCAKQHHNLQVCPIFNRQPQAL*ISETIL Trigger: CAGGATGGTCTCGGATATCAACAATGCCTGGGGCTG...CCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CAA 90 bp | CAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGCTTGCGTAGCCTCTCATaGTGCTGCTGCCTTGCATGT | + |
|
Preference number: 5 (lower is better) Translates to: QSVPSNIIISKFVLSLIGLRSLS*CCCLAC Trigger: ACATGCAAGGCAGCAGCACAATGAGAGGCTACGCAA...GCCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
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| CDS-3UTR CAA 90 bp | ACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGCAGGGCCCAATGACATaGGCTTGTGCGCCAAACTGT | + |
|
Preference number: 5 (lower is better) Translates to: TVCAKQHHNLQVCPIFNRQGPMT*ACAPNC Trigger: ACAGTTTGGCGCACAAGCCAATGTCATTGGGCCCTG...CCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
||
| CDS-3UTR CAA 90 bp | ACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGTGTGCGCCAAACTGTTaGCGTAGCCTCTCATTGTGC | + |
|
Preference number: 5 (lower is better) Translates to: TVCAKQHHNLQVCPIFNRCAPNC*RSLSLC Trigger: GCACAATGAGAGGCTACGCAAACAGTTTGGCGCACA...CCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
||
| CDS-3UTR CAA 90 bp | ACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGCCCAATGACATTGGCTaGTGCGCCAAACTGTTTGCG | + |
|
Preference number: 5 (lower is better) Translates to: TVCAKQHHNLQVCPIFNRPNDIG*CAKLFA Trigger: CGCAAACAGTTTGGCGCACAAGCCAATGTCATTGGG...CCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
||
| CDS-3UTR CAA 90 bp | ACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAGGAAGGCCTTGTTGACGTaGGAGATCTTGTGCACTCTC | + |
|
Preference number: 5 (lower is better) Translates to: TVCAKQHHNLQVCPIFNRKALLT*EILCTL Trigger: GAGAGTGCACAAGATCTCCAACGTCAACAAGGCCTT...CCTATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
||
| CDS-3UTR CAA 90 bp | ATACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATAAAAGCCTCGTGCTTCTaGAGCAAGGCCTTGATCTCG | + |
|
Preference number: 5 (lower is better) Translates to: IQSVPSNIIISKFVLSLIKASCF*SKALIS Trigger: CGAGATCAAGGCCTTGCTCAAGAAGCACGAGGCTTT...TATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
||
| CDS-3UTR CAA 90 bp | ATACAGTCTGTGCCAAGCAACATCATAATCTCCAAGTTTGTCCTATCTTTAATATTGACGTTGGAGATCTaGTGCACTCTCATCTTGCCT | + |
|
Preference number: 5 (lower is better) Translates to: IQSVPSNIIISKFVLSLILTLEI*CTLILP Trigger: AGGCAAGATGAGAGTGCACAAGATCTCCAACGTCAA...TATTAAAGATAGGACAAACTTGGAGATTATGATGTTGCTTGGCACAGACTGTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021554.16 |
||
| CDS CCA 72 bp | GGACGATCTTGGACACTTCATTGTGGATGCCCAGAATaGCGAGGCGCTCCTTGTCTGCATCCGGGAGGGTGG | + |
|
Preference number: 6 (lower is better) Translates to: GRSWTLHCGCPE*RGAPCLHPGGW Trigger: CCACCCTCCCGGATGCAGACAAGGAGCGCCTCGCCATTCTGGGCATCCACAATGAAGTGTCCAAGATCGTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021554.16 ENSMUST00000167327.2 |
||
| CDS GCA 72 bp | GCGCCAAACTGTTTGCGTAGCCTCTCATTGTGCTGCTaGCTTGCATGTTCCTCTGTGAGAGCCTGGTCCCTC | + |
|
Preference number: 6 (lower is better) Translates to: APNCLRSLSLCC*LACSSVRAWSL Trigger: GAGGGACCAGGCTCTCACAGAGGAACATGCAAGGCAGCAGCACAATGAGAGGCTACGCAAACAGTTTGGCGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021554.16 ENSMUST00000167327.2 |
||
| CDS GCA 72 bp | GATAGGTCTGGACGATCTTGGACACTTCATTGTGGATaGCCAGAATGGCGAGGCGCTCCTTGTCTGCATCCG | + |
|
Preference number: 6 (lower is better) Translates to: DRSGRSWTLHCG*PEWRGAPCLHP Trigger: CGGATGCAGACAAGGAGCGCCTCGCCATTCTGGGCATCCACAATGAAGTGTCCAAGATCGTCCAGACCTATC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021554.16 ENSMUST00000167327.2 |
||
| CDS GCA 72 bp | TGTGCGCCAAACTGTTTGCGTAGCCTCTCATTGTGCTaGTGCCTTGCATGTTCCTCTGTGAGAGCCTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: CAPNCLRSLSLC*CLACSSVRAWS Trigger: GGACCAGGCTCTCACAGAGGAACATGCAAGGCAGCAGCACAATGAGAGGCTACGCAAACAGTTTGGCGCACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021554.16 ENSMUST00000167327.2 |
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| CDS GCA 72 bp | GCTTGTGCGCCAAACTGTTTGCGTAGCCTCTCATTGTaGTGCTGCCTTGCATGTTCCTCTGTGAGAGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: ACAPNCLRSLSL*CCLACSSVRAW Trigger: CCAGGCTCTCACAGAGGAACATGCAAGGCAGCAGCACAATGAGAGGCTACGCAAACAGTTTGGCGCACAAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021554.16 ENSMUST00000167327.2 |
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| CDS CAA 90 bp | CCAATGACATTGGCTTGTGCGCCAAACTGTTTGCGTAGCCTCTCATaGTGCTGCTGCCTTGCATGTTCCTCTGTGAGAGCCTGGTCCCTC | + |
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Preference number: 6 (lower is better) Translates to: PMTLACAPNCLRSLS*CCCLACSSVRAWSL Trigger: GAGGGACCAGGCTCTCACAGAGGAACATGCAAGGCAGCAGCACAATGAGAGGCTACGCAAACAGTTTGGCGCACAAGCCAATGTCATTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021554.16 ENSMUST00000167327.2 |
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| CDS CCA 72 bp | ACAGGGTGGCTGTCTCATAATCCTTCTGCCGAAGCATaGCTTCTTTGCCATCCGTCCAGGCTTCATGGATGG | + |
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Preference number: 6 (lower is better) Translates to: TGWLSHNPSAEA*LLCHPSRLHGW Trigger: CCATCCATGAAGCCTGGACGGATGGCAAAGAAGCCATGCTTCGGCAGAAGGATTATGAGACAGCCACCCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021554.16 ENSMUST00000167327.2 |
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| CDS TCA 72 bp | TCACTACCCCCAAGCGGTTGGGGTCTACAATGCTCATaGTTCGGGCAAACTCTGCCTCTCCCATGTTGTAAC | + |
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Preference number: 6 (lower is better) Translates to: SLPPSGWGLQCS*FGQTLPLPCCN Trigger: GTTACAACATGGGAGAGGCAGAGTTTGCCCGAATCATGAGCATTGTAGACCCCAACCGCTTGGGGGTAGTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000167327.2 |
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| CDS GCA 72 bp | CTCCTGAGGCGTGATGGTTGTATAGGGGTTGGTGCCTaGCATGTTGACATGATAGGTCTGGACGATCTTGGA | + |
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Preference number: 6 (lower is better) Translates to: LLRRDGCIGVGA*HVDMIGLDDLG Trigger: TCCAAGATCGTCCAGACCTATCATGTCAACATGGCAGGCACCAACCCCTATACAACCATCACGCCTCAGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021554.16 ENSMUST00000167327.2 |
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| CDS CCA 72 bp | CTCTGCCACATCAAAGGCCGTGTTCAGGTTTGTGAGTaGATCATCCTTTCGAAGCTTTCCATAGTCAATCAA | + |
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Preference number: 6 (lower is better) Translates to: LCHIKGRVQVCE*IILSKLSIVNQ Trigger: TTGATTGACTATGGAAAGCTTCGAAAGGATGATCCACTCACAAACCTGAACACGGCCTTTGATGTGGCAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021554.16 ENSMUST00000167327.2 |
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