RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ACTL7A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000070979

Ensembl transcript IDs: ENSMUST00000095079.6

Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACTGTCCCAGTCCACAATaGTGCCATGGCGCAGGGGGT +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHCPSPQ*CHGAGG
Trigger: ACCCCCTGCGCCATGGCATCATTGTGGACTGGGACA...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR TCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACTGGACCCACAGTGGTTaGAAGCCCTGGAGTGAGGCC +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHWTHSG*KPWSEA
Trigger: GGCCTCACTCCAGGGCTTTCAACCACTGTGGGTCCA...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR GCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACCCACCAGGCCAGAGGTaGGTCCGTAGGAGTACATGG +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHPPGQR*VRRSTW
Trigger: CCATGTACTCCTACGGACGCACCTCTGGCCTGGTGG...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACGACACTGTCTGGGTGTaGAGGCCCAGCTGCATGGAC +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHDTVWV*RPSCMD
Trigger: GTCCATGCAGCTGGGCCTCCACACCCAGACAGTGTC...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR TCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACTTGAAAGCCCTGGAGTaGGGCCAGGATAGACCCACC +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHLKALE*GQDRPT
Trigger: GGTGGGTCTATCCTGGCCTCACTCCAGGGCTTTCAA...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR GCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACCGTTGGGGCACATGCTaGTCAGCTCCTTCTGCAGAC +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHRWGTC*SAPSAD
Trigger: GTCTGCAGAAGGAGCTGAGCAGCATGTGCCCCAACG...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACGACCGCGTGTTCCTCTaGGGCGATCTTCATCTCCTG +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHDRVFL*GDLHLL
Trigger: CAGGAGATGAAGATCGCCCCAGAGGAACACGCGGTC...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR TCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACAGTCTAGCCTCCCCGTaGTGCTGGGCAAAGGATAAC +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHSLASP*CWAKDN
Trigger: GTTATCCTTTGCCCAGCATCACGGGGAGGCTAGACT...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR GCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACTCCGTCCCCAATGTTTaGTGTCTGTGGAGCCCACAC +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHSVPNV*CLWSPH
Trigger: GTGTGGGCTCCACAGACAGCAAACATTGGGGACGGA...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR GCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACCTGCTCAGCTCCTTCTaGAGACGGTTAGGGAAACCC +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHLLSSF*RRLGKP
Trigger: GGGTTTCCCTAACCGTCTGCAGAAGGAGCTGAGCAG...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR GCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACTGTCGTTGGGGCACATaGTGCTCAGCTCCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHCRWGT*CSAPSA
Trigger: TGCAGAAGGAGCTGAGCAGCATGTGCCCCAACGACA...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACGATTATCCCCCGTCTTaGCCGTCTCCATGTAGGGCT +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHDYPPS*PSPCRA
Trigger: AGCCCTACATGGAGACGGCCAAGACGGGGGATAATC...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACGTCCGTAGGAGTACATaGACAGGCGGGATTGGTAGG +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHVRRST*TGGIGR
Trigger: CCTACCAATCCCGCCTGTCCATGTACTCCTACGGAC...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACGTCTGCATGGAGGCCTaGTCACTAGCTTTCTTGGCA +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHVCMEA*SLAFLA
Trigger: TGCCAAGAAAGCTAGTGACCAGGCCTCCATGCAGAC...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACCTTATGAGTGGGCTTTaGCAGGCCAGCAAAGCCACA +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHLMSGL*QASKAT
Trigger: TGTGGCTTTGCTGGCCTGCCAAAGCCCACTCATAAG...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR TCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACGTTGTTGAGATCTTATaGGTGGGCTTTGGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHVVEIL*VGFGRP
Trigger: TGGCCTGCCAAAGCCCACTCATAAGATCTCAACAAC...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR GCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACATTTACAGAAGCCAGTaGCCAGGTCCACAACCACTG +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHIYRSQ*PGPQPL
Trigger: CAGTGGTTGTGGACCTGGGCACTGGCTTCTGTAAAT...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR GCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACGTAGGCGATGTGCATTaGAGGTGTGTTGAAGGTCTC +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHVGDVH*RCVEGL
Trigger: GAGACCTTCAACACACCTGCAATGCACATCGCCTAC...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR GCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACGTGTGGAGGCCCAGCTaGATGGACTTGATTAGAGAT +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHVWRPS*MDLIRD
Trigger: ATCTCTAATCAAGTCCATGCAGCTGGGCCTCCACAC...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACTTTTCTTCTCTTCAATaGGGTCCAGGGCCACGAAGC +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHFSSLQ*GPGPRS
Trigger: GCTTCGTGGCCCTGGACCCCATTGAAGAGAAGAAAA...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR GCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACTCTCCATGTAGGGCTTaGCCACTGTTGTTGAGATCT +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHSPCRA*PLLLRS
Trigger: AGATCTCAACAACAGTGGGCAAGCCCTACATGGAGA...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CCA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACGATAACCCTCATAGATaGGGACCACATAGGACACAC +
Preference number: 4 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHDNPHR*GPHRTH
Trigger: GTGTGTCCTATGTGGTCCCCATCTATGAGGGTTATC...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CCA 90 bp CCACCAGTCCAGACTGCAGTGTCTCTCTCGGGCAGCACATTGACCTaGGGGGTGTCGTTGGGGCACATGCTGCTCAGCTCCTTCTGCAGA +
Preference number: 5 (lower is better)
Translates to: PPVQTAVSLSGSTLT*GVSLGHMLLSSFCR
Trigger: TCTGCAGAAGGAGCTGAGCAGCATGTGCCCCAACGACACCCCCCAGGTCAATGTGCTGCCCGAGAGAGACACTGCAGTCTGGACTGGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS GCA 90 bp GAGTGGGCTTTGGCAGGCCAGCAAAGCCACATTTACAGAAGCCAGTaGCCAGGTCCACAACCACTGCTTTGGTTACCTCTAGTCTTGGCC +
Preference number: 5 (lower is better)
Translates to: EWALAGQQSHIYRSQ*PGPQPLLWLPLVLA
Trigger: GGCCAAGACTAGAGGTAACCAAAGCAGTGGTTGTGGACCTGGGCACTGGCTTCTGTAAATGTGGCTTTGCTGGCCTGCCAAAGCCCACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CCA 90 bp TCTTTTAGGGAGGCGGTTTGGAGGACCTGTGTCTGCATGGAGGCCTaGTCACTAGCTTTCTTGGCAGGTCCGTCCCCAATGTTTGCTGTC +
Preference number: 5 (lower is better)
Translates to: SFREAVWRTCVCMEA*SLAFLAGPSPMFAV
Trigger: GACAGCAAACATTGGGGACGGACCTGCCAAGAAAGCTAGTGACCAGGCCTCCATGCAGACACAGGTCCTCCAAACCGCCTCCCTAAAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CCA 90 bp ACCCATACCGCCCTTTTTGCTGGGCCATCTTTTAGGGAGGCGGTTTaGAGGACCTGTGTCTGCATGGAGGCCTGGTCACTAGCTTTCTTG +
Preference number: 5 (lower is better)
Translates to: THTALFAGPSFREAV*RTCVCMEAWSLAFL
Trigger: CAAGAAAGCTAGTGACCAGGCCTCCATGCAGACACAGGTCCTCCAAACCGCCTCCCTAAAAGATGGCCCAGCAAAAAGGGCGGTATGGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS TCA 90 bp ATCCCCCGTCTTGGCCGTCTCCATGTAGGGCTTGCCCACTGTTGTTaGGATCTTATGAGTGGGCTTTGGCAGGCCAGCAAAGCCACATTT +
Preference number: 5 (lower is better)
Translates to: IPRLGRLHVGLAHCC*DLMSGLWQASKATF
Trigger: AAATGTGGCTTTGCTGGCCTGCCAAAGCCCACTCATAAGATCTCAACAACAGTGGGCAAGCCCTACATGGAGACGGCCAAGACGGGGGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS GCA 90 bp TCTCTTTGCGATTATCCCCCGTCTTGGCCGTCTCCATGTAGGGCTTaGCCACTGTTGTTGAGATCTTATGAGTGGGCTTTGGCAGGCCAG +
Preference number: 5 (lower is better)
Translates to: SLCDYPPSWPSPCRA*PLLLRSYEWALAGQ
Trigger: CTGGCCTGCCAAAGCCCACTCATAAGATCTCAACAACAGTGGGCAAGCCCTACATGGAGACGGCCAAGACGGGGGATAATCGCAAAGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS GCA 90 bp GCTGCCCCCACAGAGCAGGATGTTCCCCATGAGGTCTCGTTTGAGTaGTATGTCACATTTGTTAAGGCAGGACACTGTCTGGGTGTGGAG +
Preference number: 5 (lower is better)
Translates to: AAPTEQDVPHEVSFE*YVTFVKAGHCLGVE
Trigger: CTCCACACCCAGACAGTGTCCTGCCTTAACAAATGTGACATAGCACTCAAACGAGACCTCATGGGGAACATCCTGCTCTGTGGGGGCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS GCA 90 bp AGGGGGTTGACCAGCTTGAGATGTATATCTGGGTTAAAGAGCTCGTaGCCCACAAAGGTCTCTTTGCGATTATCCCCCGTCTTGGCCGTC +
Preference number: 5 (lower is better)
Translates to: RGLTSLRCISGLKSS*PTKVSLRLSPVLAV
Trigger: GACGGCCAAGACGGGGGATAATCGCAAAGAGACCTTTGTGGGGCACGAGCTCTTTAACCCAGATATACATCTCAAGCTGGTCAACCCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CCA 90 bp CCGTCTCCATGTAGGGCTTGCCCACTGTTGTTGAGATCTTATGAGTaGGCTTTGGCAGGCCAGCAAAGCCACATTTACAGAAGCCAGTGC +
Preference number: 5 (lower is better)
Translates to: PSPCRACPLLLRSYE*ALAGQQSHIYRSQC
Trigger: GCACTGGCTTCTGTAAATGTGGCTTTGCTGGCCTGCCAAAGCCCACTCATAAGATCTCAACAACAGTGGGCAAGCCCTACATGGAGACGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CCA 90 bp AGAGCTCGTGCCCCACAAAGGTCTCTTTGCGATTATCCCCCGTCTTaGCCGTCTCCATGTAGGGCTTGCCCACTGTTGTTGAGATCTTAT +
Preference number: 5 (lower is better)
Translates to: RARAPQRSLCDYPPS*PSPCRACPLLLRSY
Trigger: ATAAGATCTCAACAACAGTGGGCAAGCCCTACATGGAGACGGCCAAGACGGGGGATAATCGCAAAGAGACCTTTGTGGGGCACGAGCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS TCA 90 bp TCTTCTCTTCAATGGGGTCCAGGGCCACGAAGCAGCACCTCGTCTTaGTGTCCTCCACAATACCGAGATGGTCCTCAGAGAAGTGTTTTC +
Preference number: 5 (lower is better)
Translates to: SSLQWGPGPRSSTSS*CPPQYRDGPQRSVF
Trigger: GAAAACACTTCTCTGAGGACCATCTCGGTATTGTGGAGGACATCAAGACGAGGTGCTGCTTCGTGGCCCTGGACCCCATTGAAGAGAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS GCA 90 bp TCACATTTGTTAAGGCAGGACACTGTCTGGGTGTGGAGGCCCAGCTaGATGGACTTGATTAGAGATGGCTTGAAGAACATCTCCGAGCAG +
Preference number: 5 (lower is better)
Translates to: SHLLRQDTVWVWRPS*MDLIRDGLKNISEQ
Trigger: CTGCTCGGAGATGTTCTTCAAGCCATCTCTAATCAAGTCCATGCAGCTGGGCCTCCACACCCAGACAGTGTCCTGCCTTAACAAATGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CAA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACCATGGACAGGCGGGATaGGTAGGCGATGTGCATTGC +
Preference number: 5 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHHGQAG*VGDVHC
Trigger: GCAATGCACATCGCCTACCAATCCCGCCTGTCCATG...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CAA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACTGGTCACTAGCTTTCTaGGCAGGTCCGTCCCCAATG +
Preference number: 5 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHWSLAF*AGPSPM
Trigger: CATTGGGGACGGACCTGCCAAGAAAGCTAGTGACCA...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CAA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACTCTTCTGTCTCAGCATaGTCCCGACGGACCCATACC +
Preference number: 5 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHSSVSA*SRRTHT
Trigger: GGTATGGGTCCGTCGGGACAATGCTGAGACAGAAGA...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CAA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACTCTTATGAGTGGGCTTaGGCAGGCCAGCAAAGCCAC +
Preference number: 5 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHSYEWA*AGQQSH
Trigger: GTGGCTTTGCTGGCCTGCCAAAGCCCACTCATAAGA...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CAA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACCCATGGCGCAGGGGGTaGACCAGCTTGAGATGTATA +
Preference number: 5 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHPWRRG*TSLRCI
Trigger: TATACATCTCAAGCTGGTCAACCCCCTGCGCCATGG...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CAA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACCCCACAAAGGTCTCTTaGCGATTATCCCCCGTCTTG +
Preference number: 5 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHPTKVS*RLSPVL
Trigger: CAAGACGGGGGATAATCGCAAAGAGACCTTTGTGGG...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CAA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACAAGCAGCACCTCGTCTaGATGTCCTCCACAATACCG +
Preference number: 5 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHKQHLV*MSSTIP
Trigger: CGGTATTGTGGAGGACATCAAGACGAGGTGCTGCTT...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CAA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACAGGGCTTGCCCACTGTaGTTGAGATCTTATGAGTGG +
Preference number: 5 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHRACPL*LRSYEW
Trigger: CCACTCATAAGATCTCAACAACAGTGGGCAAGCCCT...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CAA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACCCCATGAGGTCTCGTTaGAGTGCTATGTCACATTTG +
Preference number: 5 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHPMRSR*SAMSHL
Trigger: CAAATGTGACATAGCACTCAAACGAGACCTCATGGG...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CAA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACTTGATTAGAGATGGCTaGAAGAACATCTCCGAGCAG +
Preference number: 5 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHLIRDG*KNISEQ
Trigger: CTGCTCGGAGATGTTCTTCAAGCCATCTCTAATCAA...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CAA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACAGTGCTATGTCACATTaGTTAAGGCAGGACACTGTC +
Preference number: 5 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHSAMSH*LRQDTV
Trigger: GACAGTGTCCTGCCTTAACAAATGTGACATAGCACT...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CAA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACAGTCTTGGCCTATCCTaGGACATAGTTGACTTAACA +
Preference number: 5 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHSLGLS*DIVDLT
Trigger: TGTTAAGTCAACTATGTCCAAGGATAGGCCAAGACT...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS-3UTR CAA 90 bp GGACAGACACGAGGGGTTTTTAATGCTACAGAAATGAACATGCCAACTCAACACAAGTGTTTTCCAGAGTaGTTCATCAGGTTCATCAGG +
Preference number: 5 (lower is better)
Translates to: GQTRGVFNATEMNMPTQHKCFPE*FIRFIR
Trigger: CCTGATGAACCTGATGAACAACTCTGGAAAACACTT...GTGTTGAGTTGGCATGTTCATTTCTGTAGCATTAAAAACCCCTCGTGTCTGTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CCA 72 bp CAGACTGCAGTGTCTCTCTCGGGCAGCACATTGACCTaGGGGGTGTCGTTGGGGCACATGCTGCTCAGCTCC +
Preference number: 6 (lower is better)
Translates to: QTAVSLSGSTLT*GVSLGHMLLSS
Trigger: GGAGCTGAGCAGCATGTGCCCCAACGACACCCCCCAGGTCAATGTGCTGCCCGAGAGAGACACTGCAGTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS TCA 72 bp CAGGCGATGGACCCACAGTGGTTGAAAGCCCTGGAGTaGGGCCAGGATAGACCCACCAGTCCAGACTGCAGT +
Preference number: 6 (lower is better)
Translates to: QAMDPQWLKALE*GQDRPTSPDCS
Trigger: ACTGCAGTCTGGACTGGTGGGTCTATCCTGGCCTCACTCCAGGGCTTTCAACCACTGTGGGTCCATCGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CCA 72 bp GAGGCGGTTTGGAGGACCTGTGTCTGCATGGAGGCCTaGTCACTAGCTTTCTTGGCAGGTCCGTCCCCAATG +
Preference number: 6 (lower is better)
Translates to: EAVWRTCVCMEA*SLAFLAGPSPM
Trigger: CATTGGGGACGGACCTGCCAAGAAAGCTAGTGACCAGGCCTCCATGCAGACACAGGTCCTCCAAACCGCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CAA 90 bp GTTTGGAGGACCTGTGTCTGCATGGAGGCCTGGTCACTAGCTTTCTaGGCAGGTCCGTCCCCAATGTTTGCTGTCTGTGGAGCCCACACA +
Preference number: 6 (lower is better)
Translates to: VWRTCVCMEAWSLAF*AGPSPMFAVCGAHT
Trigger: TGTGTGGGCTCCACAGACAGCAAACATTGGGGACGGACCTGCCAAGAAAGCTAGTGACCAGGCCTCCATGCAGACACAGGTCCTCCAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS TCA 72 bp CTTCTCTCTGTTGGTATGAGGACTCAGGGGTGGGTCTaGAACCAGGACCGCGTGTTCCTCTGGGGCGATCTT +
Preference number: 6 (lower is better)
Translates to: LLSVGMRTQGWV*NQDRVFLWGDL
Trigger: AAGATCGCCCCAGAGGAACACGCGGTCCTGGTTTCAGACCCACCCCTGAGTCCTCATACCAACAGAGAGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS TCA 72 bp CAATGGGGTCCAGGGCCACGAAGCAGCACCTCGTCTTaGTGTCCTCCACAATACCGAGATGGTCCTCAGAGA +
Preference number: 6 (lower is better)
Translates to: QWGPGPRSSTSS*CPPQYRDGPQR
Trigger: TCTCTGAGGACCATCTCGGTATTGTGGAGGACATCAAGACGAGGTGCTGCTTCGTGGCCCTGGACCCCATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CCA 72 bp GCCCCACAAAGGTCTCTTTGCGATTATCCCCCGTCTTaGCCGTCTCCATGTAGGGCTTGCCCACTGTTGTTG +
Preference number: 6 (lower is better)
Translates to: APQRSLCDYPPS*PSPCRACPLLL
Trigger: CAACAACAGTGGGCAAGCCCTACATGGAGACGGCCAAGACGGGGGATAATCGCAAAGAGACCTTTGTGGGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CAA 72 bp CCGTCTTGGCCGTCTCCATGTAGGGCTTGCCCACTGTaGTTGAGATCTTATGAGTGGGCTTTGGCAGGCCAG +
Preference number: 6 (lower is better)
Translates to: PSWPSPCRACPL*LRSYEWALAGQ
Trigger: CTGGCCTGCCAAAGCCCACTCATAAGATCTCAACAACAGTGGGCAAGCCCTACATGGAGACGGCCAAGACGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CAA 72 bp TCAATGGGGTCCAGGGCCACGAAGCAGCACCTCGTCTaGATGTCCTCCACAATACCGAGATGGTCCTCAGAG +
Preference number: 6 (lower is better)
Translates to: SMGSRATKQHLV*MSSTIPRWSSE
Trigger: CTCTGAGGACCATCTCGGTATTGTGGAGGACATCAAGACGAGGTGCTGCTTCGTGGCCCTGGACCCCATTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CAA 90 bp GATTATCCCCCGTCTTGGCCGTCTCCATGTAGGGCTTGCCCACTGTaGTTGAGATCTTATGAGTGGGCTTTGGCAGGCCAGCAAAGCCAC +
Preference number: 6 (lower is better)
Translates to: DYPPSWPSPCRACPL*LRSYEWALAGQQSH
Trigger: GTGGCTTTGCTGGCCTGCCAAAGCCCACTCATAAGATCTCAACAACAGTGGGCAAGCCCTACATGGAGACGGCCAAGACGGGGGATAATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CAA 72 bp ACCTGTGTCTGCATGGAGGCCTGGTCACTAGCTTTCTaGGCAGGTCCGTCCCCAATGTTTGCTGTCTGTGGA +
Preference number: 6 (lower is better)
Translates to: TCVCMEAWSLAF*AGPSPMFAVCG
Trigger: TCCACAGACAGCAAACATTGGGGACGGACCTGCCAAGAAAGCTAGTGACCAGGCCTCCATGCAGACACAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CAA 90 bp TATCCCCCGTCTTGGCCGTCTCCATGTAGGGCTTGCCCACTGTTGTaGAGATCTTATGAGTGGGCTTTGGCAGGCCAGCAAAGCCACATT +
Preference number: 6 (lower is better)
Translates to: YPPSWPSPCRACPLL*RSYEWALAGQQSHI
Trigger: AATGTGGCTTTGCTGGCCTGCCAAAGCCCACTCATAAGATCTCAACAACAGTGGGCAAGCCCTACATGGAGACGGCCAAGACGGGGGATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS TCA 72 bp CTTGGCCGTCTCCATGTAGGGCTTGCCCACTGTTGTTaGGATCTTATGAGTGGGCTTTGGCAGGCCAGCAAA +
Preference number: 6 (lower is better)
Translates to: LGRLHVGLAHCC*DLMSGLWQASK
Trigger: TTTGCTGGCCTGCCAAAGCCCACTCATAAGATCTCAACAACAGTGGGCAAGCCCTACATGGAGACGGCCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS GCA 72 bp GTCACTAGCTTTCTTGGCAGGTCCGTCCCCAATGTTTaGTGTCTGTGGAGCCCACACACCATCCAGAGACAT +
Preference number: 6 (lower is better)
Translates to: VTSFLGRSVPNV*CLWSPHTIQRH
Trigger: ATGTCTCTGGATGGTGTGTGGGCTCCACAGACAGCAAACATTGGGGACGGACCTGCCAAGAAAGCTAGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CAA 72 bp TCTTGGCCGTCTCCATGTAGGGCTTGCCCACTGTTGTaGAGATCTTATGAGTGGGCTTTGGCAGGCCAGCAA +
Preference number: 6 (lower is better)
Translates to: SWPSPCRACPLL*RSYEWALAGQQ
Trigger: TTGCTGGCCTGCCAAAGCCCACTCATAAGATCTCAACAACAGTGGGCAAGCCCTACATGGAGACGGCCAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CAA 90 bp CCATGTAGGGCTTGCCCACTGTTGTTGAGATCTTATGAGTGGGCTTaGGCAGGCCAGCAAAGCCACATTTACAGAAGCCAGTGCCCAGGT +
Preference number: 6 (lower is better)
Translates to: PCRACPLLLRSYEWA*AGQQSHIYRSQCPG
Trigger: ACCTGGGCACTGGCTTCTGTAAATGTGGCTTTGCTGGCCTGCCAAAGCCCACTCATAAGATCTCAACAACAGTGGGCAAGCCCTACATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CAA 90 bp TTAAGGCAGGACACTGTCTGGGTGTGGAGGCCCAGCTGCATGGACTaGATTAGAGATGGCTTGAAGAACATCTCCGAGCAGAGGAACCTC +
Preference number: 6 (lower is better)
Translates to: LRQDTVWVWRPSCMD*IRDGLKNISEQRNL
Trigger: GAGGTTCCTCTGCTCGGAGATGTTCTTCAAGCCATCTCTAATCAAGTCCATGCAGCTGGGCCTCCACACCCAGACAGTGTCCTGCCTTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CAA 72 bp GACATAGTTGACTTAACAGGGTCTTCTGTCTCAGCATaGTCCCGACGGACCCATACCGCCCTTTTTGCTGGG +
Preference number: 6 (lower is better)
Translates to: DIVDLTGSSVSA*SRRTHTALFAG
Trigger: CCCAGCAAAAAGGGCGGTATGGGTCCGTCGGGACAATGCTGAGACAGAAGACCCTGTTAAGTCAACTATGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CAA 90 bp ATAGTGCTGCCCCCACAGAGCAGGATGTTCCCCATGAGGTCTCGTTaGAGTGCTATGTCACATTTGTTAAGGCAGGACACTGTCTGGGTG +
Preference number: 6 (lower is better)
Translates to: IVLPPQSRMFPMRSR*SAMSHLLRQDTVWV
Trigger: CACCCAGACAGTGTCCTGCCTTAACAAATGTGACATAGCACTCAAACGAGACCTCATGGGGAACATCCTGCTCTGTGGGGGCAGCACTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CAA 90 bp TTCTTCTCTTCAATGGGGTCCAGGGCCACGAAGCAGCACCTCGTCTaGATGTCCTCCACAATACCGAGATGGTCCTCAGAGAAGTGTTTT +
Preference number: 6 (lower is better)
Translates to: FFSSMGSRATKQHLV*MSSTIPRWSSEKCF
Trigger: AAAACACTTCTCTGAGGACCATCTCGGTATTGTGGAGGACATCAAGACGAGGTGCTGCTTCGTGGCCCTGGACCCCATTGAAGAGAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS GCA 72 bp TTAAGGCAGGACACTGTCTGGGTGTGGAGGCCCAGCTaGATGGACTTGATTAGAGATGGCTTGAAGAACATC +
Preference number: 6 (lower is better)
Translates to: LRQDTVWVWRPS*MDLIRDGLKNI
Trigger: GATGTTCTTCAAGCCATCTCTAATCAAGTCCATGCAGCTGGGCCTCCACACCCAGACAGTGTCCTGCCTTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CCA 72 bp ATGGCGCAGGGGGTTGACCAGCTTGAGATGTATATCTaGGTTAAAGAGCTCGTGCCCCACAAAGGTCTCTTT +
Preference number: 6 (lower is better)
Translates to: MAQGVDQLEMYI*VKELVPHKGLF
Trigger: AAAGAGACCTTTGTGGGGCACGAGCTCTTTAACCCAGATATACATCTCAAGCTGGTCAACCCCCTGCGCCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CAA 72 bp GCTTGCCCACTGTTGTTGAGATCTTATGAGTGGGCTTaGGCAGGCCAGCAAAGCCACATTTACAGAAGCCAG +
Preference number: 6 (lower is better)
Translates to: ACPLLLRSYEWA*AGQQSHIYRSQ
Trigger: CTGGCTTCTGTAAATGTGGCTTTGCTGGCCTGCCAAAGCCCACTCATAAGATCTCAACAACAGTGGGCAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CAA 72 bp CCCCCACAGAGCAGGATGTTCCCCATGAGGTCTCGTTaGAGTGCTATGTCACATTTGTTAAGGCAGGACACT +
Preference number: 6 (lower is better)
Translates to: PPQSRMFPMRSR*SAMSHLLRQDT
Trigger: AGTGTCCTGCCTTAACAAATGTGACATAGCACTCAAACGAGACCTCATGGGGAACATCCTGCTCTGTGGGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS GCA 72 bp ACCAGCTTGAGATGTATATCTGGGTTAAAGAGCTCGTaGCCCACAAAGGTCTCTTTGCGATTATCCCCCGTC +
Preference number: 6 (lower is better)
Translates to: TSLRCISGLKSS*PTKVSLRLSPV
Trigger: GACGGGGGATAATCGCAAAGAGACCTTTGTGGGGCACGAGCTCTTTAACCCAGATATACATCTCAAGCTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CCA 72 bp TGTAGGGCTTGCCCACTGTTGTTGAGATCTTATGAGTaGGCTTTGGCAGGCCAGCAAAGCCACATTTACAGA +
Preference number: 6 (lower is better)
Translates to: CRACPLLLRSYE*ALAGQQSHIYR
Trigger: TCTGTAAATGTGGCTTTGCTGGCCTGCCAAAGCCCACTCATAAGATCTCAACAACAGTGGGCAAGCCCTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CCA 72 bp AGTGCTATGTCACATTTGTTAAGGCAGGACACTGTCTaGGTGTGGAGGCCCAGCTGCATGGACTTGATTAGA +
Preference number: 6 (lower is better)
Translates to: SAMSHLLRQDTV*VWRPSCMDLIR
Trigger: TCTAATCAAGTCCATGCAGCTGGGCCTCCACACCCAGACAGTGTCCTGCCTTAACAAATGTGACATAGCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CAA 72 bp TTACAGAAGCCAGTGCCCAGGTCCACAACCACTGCTTaGGTTACCTCTAGTCTTGGCCTATCCTTGGACATA +
Preference number: 6 (lower is better)
Translates to: LQKPVPRSTTTA*VTSSLGLSLDI
Trigger: TATGTCCAAGGATAGGCCAAGACTAGAGGTAACCAAAGCAGTGGTTGTGGACCTGGGCACTGGCTTCTGTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS GCA 72 bp ACAGAGCAGGATGTTCCCCATGAGGTCTCGTTTGAGTaGTATGTCACATTTGTTAAGGCAGGACACTGTCTG +
Preference number: 6 (lower is better)
Translates to: TEQDVPHEVSFE*YVTFVKAGHCL
Trigger: CAGACAGTGTCCTGCCTTAACAAATGTGACATAGCACTCAAACGAGACCTCATGGGGAACATCCTGCTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CAA 90 bp AGGTCCACAACCACTGCTTTGGTTACCTCTAGTCTTGGCCTATCCTaGGACATAGTTGACTTAACAGGGTCTTCTGTCTCAGCATTGTCC +
Preference number: 6 (lower is better)
Translates to: RSTTTALVTSSLGLS*DIVDLTGSSVSALS
Trigger: GGACAATGCTGAGACAGAAGACCCTGTTAAGTCAACTATGTCCAAGGATAGGCCAAGACTAGAGGTAACCAAAGCAGTGGTTGTGGACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6
CDS CAA 90 bp AAGCCACATTTACAGAAGCCAGTGCCCAGGTCCACAACCACTGCTTaGGTTACCTCTAGTCTTGGCCTATCCTTGGACATAGTTGACTTA +
Preference number: 6 (lower is better)
Translates to: KPHLQKPVPRSTTTA*VTSSLGLSLDIVDL
Trigger: TAAGTCAACTATGTCCAAGGATAGGCCAAGACTAGAGGTAACCAAAGCAGTGGTTGTGGACCTGGGCACTGGCTTCTGTAAATGTGGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095079.6