Pregenerated sensors for ACTL6A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027671Ensembl transcript IDs: ENSMUST00000029214.14, ENSMUST00000126144.3, ENSMUST00000193231.6, ENSMUST00000193615.2, ENSMUST00000194781.6
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TCTTTTCCTGAGTGTACTAAAGCTACAGACGTTGAGGTGACGGGCAGGCAGGGTCACCAATCCATGAGCTaGACCTCCGCTCCACCGTCG | + |
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Preference number: 2 (lower is better) Translates to: SFPECTKATDVEVTGRQGHQSMS*TSAPPS Trigger: CGACGGTGGAGCGGAGGTTCAGCTCATGGATTGGTG...ACCCTGCCTGCCCGTCACCTCAACGTCTGTAGCTTTAGTACACTCAGGAAAAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193231.6 |
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| 3UTR-3UTR CCA 90 bp | TCTTTTCCTGAGTGTACTAAAGCTACAGACGTTGAGGTGACGGGCAGGCAGGGTCAACCGCATACTTGGTaGAGTTTTCTGAGAAAGCTC | + |
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Preference number: 2 (lower is better) Translates to: SFPECTKATDVEVTGRQGQPHTW*SFLRKL Trigger: GAGCTTTCTCAGAAAACTCCACCAAGTATGCGGTTG...ACCCTGCCTGCCCGTCACCTCAACGTCTGTAGCTTTAGTACACTCAGGAAAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000193231.6 |
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| 3UTR-3UTR GCA 90 bp | ACTGTCCAAAATCAGCCCAGTAGAACGACCATTAGCAAATGCCGTCAAAACTGCGGAAGAATGCAGGGATaGTGTAGTGCTCAAACATCA | + |
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Preference number: 2 (lower is better) Translates to: TVQNQPSRTTISKCRQNCGRMQG*CSAQTS Trigger: TGATGTTTGAGCACTACAGCATCCCTGCATTCTTCC...GCAGTTTTGACGGCATTTGCTAATGGTCGTTCTACTGGGCTGATTTTGGACAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000193615.2 |
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| 3UTR-3UTR GCA 90 bp | TGGCTGGAGAACCTTCTCGAACAGCCTCTTTTGATGCAATCATGTAAGGAGGAATTTGCAAAGGAAGAATaGAGGGATGCTGTAGTGCTC | + |
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Preference number: 2 (lower is better) Translates to: WLENLLEQPLLMQSCKEEFAKEE*RDAVVL Trigger: GAGCACTACAGCATCCCTGCATTCTTCCTTTGCAAA...TTCCTCCTTACATGATTGCATCAAAAGAGGCTGTTCGAGAAGGTTCTCCAGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193615.2 |
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| 3UTR-3UTR GCA 90 bp | CAGAGGGGATTTCACAATGCCTTGTTGAAGAACATAGCCATCGTGGACTGGAATACGACCATTAGCAAATaGCGTCAAAACTGCAGTTTT | + |
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Preference number: 2 (lower is better) Translates to: QRGFHNALLKNIAIVDWNTTISK*RQNCSF Trigger: AAAACTGCAGTTTTGACGGCATTTGCTAATGGTCGT...ATTCCAGTCCACGATGGCTATGTTCTTCAACAAGGCATTGTGAAATCCCCTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000193615.2 |
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| 3UTR TCA 72 bp | CTTTTCCTGAGTGTACTAAAGCTACAGACGTTGAGGTaGCGGGCAGGCAGGGTGGAGCCCTCAAGGGCATTT | + |
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Preference number: 3 (lower is better) Translates to: LFLSVLKLQTLR*RAGRVEPSRAF Trigger: AAATGCCCTTGAGGGCTCCACCCTGCCTGCCCGTCACCTCAACGTCTGTAGCTTTAGTACACTCAGGAAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193231.6 |
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| 3UTR TCA 72 bp | CCAGTTGGCTGGAGAACCTTCTCGAACAGCCTCTTTTaGTGCAATCATGTAAGGAGGAATGAGTTCTATGTT | + |
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Preference number: 3 (lower is better) Translates to: PVGWRTFSNSLF*CNHVRRNEFYV Trigger: AACATAGAACTCATTCCTCCTTACATGATTGCATCAAAAGAGGCTGTTCGAGAAGGTTCTCCAGCCAACTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193615.2 |
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| 3UTR TCA 72 bp | GAACAGCCTCTTTTGATGCAATCATGTAAGGAGGAATaGGTTCTATGTTCATTTCCTGGAAGAGTTCTCTGC | + |
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Preference number: 3 (lower is better) Translates to: EQPLLMQSCKEE*VLCSFPGRVLC Trigger: GCAGAGAACTCTTCCAGGAAATGAACATAGAACTCATTCCTCCTTACATGATTGCATCAAAAGAGGCTGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193615.2 |
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| CDS-3UTR TCA 90 bp | TGGTCATCTTTTCCTGAGTGTACTAAAGCTACAGACGTTGAGGTGACGGGCAGGCACCAATCCATGAGCTaGACCTCCGCTCCACCGTCG | + |
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Preference number: 4 (lower is better) Translates to: WSSFPECTKATDVEVTGRHQSMS*TSAPPS Trigger: CGACGGTGGAGCGGAGGTTCAGCTCATGGATTGGTG...CCTGCCCGTCACCTCAACGTCTGTAGCTTTAGTACACTCAGGAAAAGATGACCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR CCA 90 bp | TCTTTTCCTGAGTGTACTAAAGCTACAGACGTTGAGGTGACGGGCAGGCAGGGTGCACGCGGAGGGCATTaGTGTCTATGTAGTAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: SFPECTKATDVEVTGRQGARGGH*CLCSRW Trigger: CCACCTACTACATAGACACCAATGCCCTCCGCGTGC...ACCCTGCCTGCCCGTCACCTCAACGTCTGTAGCTTTAGTACACTCAGGAAAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029214.14 ENSMUST00000193231.6 |
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| CDS-3UTR TCA 90 bp | GCTCCACTGTCCAAAATCAGCCCAGTAGAACGACCATTAGCAAATGCCGTCAAAACGGTGCTTCCGACATaGGAACAGGATGCAGGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: APLSKISPVERPLANAVKTVLPT*EQDAGW Trigger: CCAGCCTGCATCCTGTTCTCATGTCGGAAGCACCGT...TTTGACGGCATTTGCTAATGGTCGTTCTACTGGGCTGATTTTGGACAGTGGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000193615.2 |
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| CDS-3UTR CCA 90 bp | TGGTCATCTTTTCCTGAGTGTACTAAAGCTACAGACGTTGAGGTGACGGGCAGGTGTCTATGTAGTAGGTaGGCCCGCCCTGCTTGCCTT | + |
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Preference number: 4 (lower is better) Translates to: WSSFPECTKATDVEVTGRCLCSR*ARPACL Trigger: AAGGCAAGCAGGGCGGGCCCACCTACTACATAGACA...CCTGCCCGTCACCTCAACGTCTGTAGCTTTAGTACACTCAGGAAAAGATGACCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029214.14 ENSMUST00000193231.6 |
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| CDS-3UTR TCA 90 bp | TGGTCATCTTTTCCTGAGTGTACTAAAGCTACAGACGTTGAGGTGACGGGCAGGGCCATTCTTGAGTGGTaGGATGGCCTCCATGTTCTC | + |
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Preference number: 4 (lower is better) Translates to: WSSFPECTKATDVEVTGRAILEW*DGLHVL Trigger: GAGAACATGGAGGCCATCTCACCACTCAAGAATGGC...CCTGCCCGTCACCTCAACGTCTGTAGCTTTAGTACACTCAGGAAAAGATGACCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029214.14 ENSMUST00000193231.6 |
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| CDS-3UTR TCA 90 bp | TCTTTTCCTGAGTGTACTAAAGCTACAGACGTTGAGGTGACGGGCAGGCAGGGTCGTAGAGACCTGGTCTaGTGTCGATGTCACACATTC | + |
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Preference number: 4 (lower is better) Translates to: SFPECTKATDVEVTGRQGRRDLV*CRCHTF Trigger: GAATGTGTGACATCGACATCAGACCAGGTCTCTACG...ACCCTGCCTGCCCGTCACCTCAACGTCTGTAGCTTTAGTACACTCAGGAAAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR CCA 90 bp | AGCATAGGCAGTAACTTGTACTTGTCAATACAGAGTAATTCCACCAACCAACCCCCTCCATGTTCTCCCTaGGCACGCGGAGGGCATTGG | + |
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Preference number: 4 (lower is better) Translates to: SIGSNLYLSIQSNSTNQPPPCSP*ARGGHW Trigger: CCAATGCCCTCCGCGTGCCCAGGGAGAACATGGAGG...GGGTTGGTTGGTGGAATTACTCTGTATTGACAAGTACAAGTTACTGCCTATGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR CCA 90 bp | TCTTTTCCTGAGTGTACTAAAGCTACAGACGTTGAGGTGACGGGCAGGCAGGGTCACAGTTGTAGCCATTaGGGAATTCGTAGTGGACGG | + |
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Preference number: 4 (lower is better) Translates to: SFPECTKATDVEVTGRQGHSCSH*GIRSGR Trigger: CCGTCCACTACGAATTCCCCAATGGCTACAACTGTG...ACCCTGCCTGCCCGTCACCTCAACGTCTGTAGCTTTAGTACACTCAGGAAAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| 3UTR CAA 72 bp | CCAATCCATGAGCTGAACCTCCGCTCCACCGTCGTGTaGTTTGCAATCAGTTTCAACCGCATACTTGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: PIHELNLRSTVV*FAISFNRILGG Trigger: TCCACCAAGTATGCGGTTGAAACTGATTGCAAACAACACGACGGTGGAGCGGAGGTTCAGCTCATGGATTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193231.6 |
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| CDS-3UTR TCA 90 bp | GGCAGTAACTTGTACTTGTCAATACAGAGTAATTCCACCAACCAACCCCCAGGACTGGTTGTGACAACGTaGCTGACTCCCAGCATCGTG | + |
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Preference number: 4 (lower is better) Translates to: GSNLYLSIQSNSTNQPPGLVVTT*LTPSIV Trigger: CACGATGCTGGGAGTCAGTCACGTTGTCACAACCAG...TCCTGGGGGTTGGTTGGTGGAATTACTCTGTATTGACAAGTACAAGTTACTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR CCA 90 bp | GGCAGTAACTTGTACTTGTCAATACAGAGTAATTCCACCAACCAACCCCCAGGAGCACGCGGAGGGCATTaGTGTCTATGTAGTAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: GSNLYLSIQSNSTNQPPGARGGH*CLCSRW Trigger: CCACCTACTACATAGACACCAATGCCCTCCGCGTGC...TCCTGGGGGTTGGTTGGTGGAATTACTCTGTATTGACAAGTACAAGTTACTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR TCA 90 bp | AGCATAGGCAGTAACTTGTACTTGTCAATACAGAGTAATTCCACCAACCAACCCACGGTGCTTCCGACATaGGAACAGGATGCAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: SIGSNLYLSIQSNSTNQPTVLPT*EQDAGW Trigger: CCAGCCTGCATCCTGTTCTCATGTCGGAAGCACCGT...GGGTTGGTTGGTGGAATTACTCTGTATTGACAAGTACAAGTTACTGCCTATGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR CCA 90 bp | TGGTCATCTTTTCCTGAGTGTACTAAAGCTACAGACGTTGAGGTGACGGGCAGGTCTTTTCCAGTTGGCTaGAGAACCTTCTCGAACAGC | + |
|
Preference number: 4 (lower is better) Translates to: WSSFPECTKATDVEVTGRSFPVG*RTFSNS Trigger: GCTGTTCGAGAAGGTTCTCCAGCCAACTGGAAAAGA...CCTGCCCGTCACCTCAACGTCTGTAGCTTTAGTACACTCAGGAAAAGATGACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR TCA 90 bp | TCTTTTCCTGAGTGTACTAAAGCTACAGACGTTGAGGTGACGGGCAGGCAGGGTGAAATCCACATCTGTTaGAAGGTACCCAAAGATGCT | + |
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Preference number: 4 (lower is better) Translates to: SFPECTKATDVEVTGRQGEIHIC*KVPKDA Trigger: AGCATCTTTGGGTACCTTTCAACAGATGTGGATTTC...ACCCTGCCTGCCCGTCACCTCAACGTCTGTAGCTTTAGTACACTCAGGAAAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR GCA 90 bp | GGCAGTAACTTGTACTTGTCAATACAGAGTAATTCCACCAACCAACCCCCAGGAGACATGAGAACAGGATaGAGGCTGGCTTCGGATTTG | + |
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Preference number: 4 (lower is better) Translates to: GSNLYLSIQSNSTNQPPGDMRTG*RLASDL Trigger: CAAATCCGAAGCCAGCCTGCATCCTGTTCTCATGTC...TCCTGGGGGTTGGTTGGTGGAATTACTCTGTATTGACAAGTACAAGTTACTGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR GCA 90 bp | TGGTCATCTTTTCCTGAGTGTACTAAAGCTACAGACGTTGAGGTGACGGGCAGGTTTGCAAAGGAAGAATaGAGGGATGCTGTAGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: WSSFPECTKATDVEVTGRFAKEE*RDAVVL Trigger: GAGCACTACAGCATCCCTGCATTCTTCCTTTGCAAA...CCTGCCCGTCACCTCAACGTCTGTAGCTTTAGTACACTCAGGAAAAGATGACCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR CCA 90 bp | AGCATAGGCAGTAACTTGTACTTGTCAATACAGAGTAATTCCACCAACCAACCCTGTCTATGTAGTAGGTaGGCCCGCCCTGCTTGCCTT | + |
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Preference number: 4 (lower is better) Translates to: SIGSNLYLSIQSNSTNQPCLCSR*ARPACL Trigger: AAGGCAAGCAGGGCGGGCCCACCTACTACATAGACA...GGGTTGGTTGGTGGAATTACTCTGTATTGACAAGTACAAGTTACTGCCTATGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR CCA 90 bp | TCTTTTCCTGAGTGTACTAAAGCTACAGACGTTGAGGTGACGGGCAGGCAGGGTCAAGACCTTGTAACCTaGGGCAGTTTCTCTTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: SFPECTKATDVEVTGRQGQDLVT*GSFSFL Trigger: AAGAAAAGAGAAACTGCCCCAGGTTACAAGGTCTTG...ACCCTGCCTGCCCGTCACCTCAACGTCTGTAGCTTTAGTACACTCAGGAAAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR GCA 90 bp | ATCAGCCCAGTAGAACGACCATTAGCAAATGCCGTCAAAACTGCAGTTTTGCAAGACATGAGAACAGGATaGAGGCTGGCTTCGGATTTG | + |
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Preference number: 4 (lower is better) Translates to: ISPVERPLANAVKTAVLQDMRTG*RLASDL Trigger: CAAATCCGAAGCCAGCCTGCATCCTGTTCTCATGTC...TTGCAAAACTGCAGTTTTGACGGCATTTGCTAATGGTCGTTCTACTGGGCTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000193615.2 |
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| CDS-3UTR GCA 90 bp | TCTTTTCCTGAGTGTACTAAAGCTACAGACGTTGAGGTGACGGGCAGGCAGGGTACGACCATTAGCAAATaGCGTCAAAACTGCAGTTTT | + |
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Preference number: 4 (lower is better) Translates to: SFPECTKATDVEVTGRQGTTISK*RQNCSF Trigger: AAAACTGCAGTTTTGACGGCATTTGCTAATGGTCGT...ACCCTGCCTGCCCGTCACCTCAACGTCTGTAGCTTTAGTACACTCAGGAAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR GCA 90 bp | GGCAGTAACTTGTACTTGTCAATACAGAGTAATTCCACCAACCAACCCCCAGGAGGAAGAATGCAGGGATaGTGTAGTGCTCAAACATCA | + |
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Preference number: 4 (lower is better) Translates to: GSNLYLSIQSNSTNQPPGGRMQG*CSAQTS Trigger: TGATGTTTGAGCACTACAGCATCCCTGCATTCTTCC...TCCTGGGGGTTGGTTGGTGGAATTACTCTGTATTGACAAGTACAAGTTACTGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR CCA 90 bp | TGGTCATCTTTTCCTGAGTGTACTAAAGCTACAGACGTTGAGGTGACGGGCAGGATGTATGATCCAAAATaGCCTGGAAACTATCCCAGT | + |
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Preference number: 4 (lower is better) Translates to: WSSFPECTKATDVEVTGRMYDPK*PGNYPS Trigger: ACTGGGATAGTTTCCAGGCCATTTTGGATCATACAT...CCTGCCCGTCACCTCAACGTCTGTAGCTTTAGTACACTCAGGAAAAGATGACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR GCA 90 bp | GGCAGTAACTTGTACTTGTCAATACAGAGTAATTCCACCAACCAACCCCCAGGAGAGGGGATTTCACAATaGCTTGTTGAAGAACATAGC | + |
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Preference number: 4 (lower is better) Translates to: GSNLYLSIQSNSTNQPPGEGISQ*LVEEHS Trigger: GCTATGTTCTTCAACAAGGCATTGTGAAATCCCCTC...TCCTGGGGGTTGGTTGGTGGAATTACTCTGTATTGACAAGTACAAGTTACTGCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR GCA 90 bp | GGCAGTAACTTGTACTTGTCAATACAGAGTAATTCCACCAACCAACCCCCAGGAAATTTTCAGCCGCTCTaGCCCAAAATCACAGTTGTA | + |
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Preference number: 4 (lower is better) Translates to: GSNLYLSIQSNSTNQPPGNFQPL*PKITVV Trigger: TACAACTGTGATTTTGGGGCAGAGCGGCTGAAAATT...TCCTGGGGGTTGGTTGGTGGAATTACTCTGTATTGACAAGTACAAGTTACTGCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR CCA 90 bp | GGCAGTAACTTGTACTTGTCAATACAGAGTAATTCCACCAACCAACCCCCAGGAACAGTCCCTTTACGTTaGAAGGGTCAAATAACCCTT | + |
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Preference number: 4 (lower is better) Translates to: GSNLYLSIQSNSTNQPPGTVPLR*KGQITL Trigger: AAGGGTTATTTGACCCTTCCAACGTAAAGGGACTGT...TCCTGGGGGTTGGTTGGTGGAATTACTCTGTATTGACAAGTACAAGTTACTGCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR TCA 90 bp | GGCAGTAACTTGTACTTGTCAATACAGAGTAATTCCACCAACCAACCCCCAGGATGCATCTTGTATGTATaGTCCAAAATGGCCTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: GSNLYLSIQSNSTNQPPGCILYV*SKMAWK Trigger: TTTCCAGGCCATTTTGGATCATACATACAAGATGCA...TCCTGGGGGTTGGTTGGTGGAATTACTCTGTATTGACAAGTACAAGTTACTGCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR CCA 90 bp | AGCATAGGCAGTAACTTGTACTTGTCAATACAGAGTAATTCCACCAACCAACCCCAACCGCATACTTGGTaGAGTTTTCTGAGAAAGCTC | + |
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Preference number: 4 (lower is better) Translates to: SIGSNLYLSIQSNSTNQPQPHTW*SFLRKL Trigger: GAGCTTTCTCAGAAAACTCCACCAAGTATGCGGTTG...GGGTTGGTTGGTGGAATTACTCTGTATTGACAAGTACAAGTTACTGCCTATGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR TCA 90 bp | ATCAGCCCAGTAGAACGACCATTAGCAAATGCCGTCAAAACTGCAGTTTTGCAATGCATCTTGTATGTATaGTCCAAAATGGCCTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: ISPVERPLANAVKTAVLQCILYV*SKMAWK Trigger: TTTCCAGGCCATTTTGGATCATACATACAAGATGCA...TTGCAAAACTGCAGTTTTGACGGCATTTGCTAATGGTCGTTCTACTGGGCTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000193615.2 |
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| CDS-3UTR GCA 90 bp | AGCATAGGCAGTAACTTGTACTTGTCAATACAGAGTAATTCCACCAACCAACCCAAGAGTTCTCTGCACTaGATGGTAATGAAGTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: SIGSNLYLSIQSNSTNQPKSSLH*MVMKSP Trigger: TGGAGACTTCATTACCATGCAGTGCAGAGAACTCTT...GGGTTGGTTGGTGGAATTACTCTGTATTGACAAGTACAAGTTACTGCCTATGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR GCA 90 bp | GGCAGTAACTTGTACTTGTCAATACAGAGTAATTCCACCAACCAACCCCCAGGATTTCTTTCTACACACTaGTTCCCTCCTTCTTCATAT | + |
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Preference number: 4 (lower is better) Translates to: GSNLYLSIQSNSTNQPPGFLSTH*FPPSSY Trigger: ATATGAAGAAGGAGGGAAGCAGTGTGTAGAAAGAAA...TCCTGGGGGTTGGTTGGTGGAATTACTCTGTATTGACAAGTACAAGTTACTGCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR CCA 90 bp | ATCAGCCCAGTAGAACGACCATTAGCAAATGCCGTCAAAACTGCAGTTTTGCAAATGTATGATCCAAAATaGCCTGGAAACTATCCCAGT | + |
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Preference number: 4 (lower is better) Translates to: ISPVERPLANAVKTAVLQMYDPK*PGNYPS Trigger: ACTGGGATAGTTTCCAGGCCATTTTGGATCATACAT...TTGCAAAACTGCAGTTTTGACGGCATTTGCTAATGGTCGTTCTACTGGGCTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000193615.2 |
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| CDS-3UTR CCA 90 bp | AGCATAGGCAGTAACTTGTACTTGTCAATACAGAGTAATTCCACCAACCAACCCTTTCAACCGCATACTTaGTGGAGTTTTCTGAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: SIGSNLYLSIQSNSTNQPFQPHT*WSFLRK Trigger: CTTTCTCAGAAAACTCCACCAAGTATGCGGTTGAAA...GGGTTGGTTGGTGGAATTACTCTGTATTGACAAGTACAAGTTACTGCCTATGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS CCA 90 bp | GTGGTGAGATGGCCTCCATGTTCTCCCTGGGCACGCGGAGGGCATTaGTGTCTATGTAGTAGGTGGGCCCGCCCTGCTTGCCTTTGTCAC | + |
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Preference number: 5 (lower is better) Translates to: VVRWPPCSPWARGGH*CLCSRWARPACLCH Trigger: GTGACAAAGGCAAGCAGGGCGGGCCCACCTACTACATAGACACCAATGCCCTCCGCGTGCCCAGGGAGAACATGGAGGCCATCTCACCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029214.14 ENSMUST00000126144.3 ENSMUST00000194781.6 |
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| CDS TCA 90 bp | TCCTCCTGCTACGATCACACTGCCGTAGAGACCCCATGCCATTCTTaGGTGGTGAGATGGCCTCCATGTTCTCCCTGGGCACGCGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: SSCYDHTAVETPCHS*VVRWPPCSPWARGG Trigger: CCCTCCGCGTGCCCAGGGAGAACATGGAGGCCATCTCACCACTCAAGAATGGCATGGGGTCTCTACGGCAGTGTGATCGTAGCAGGAGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193231.6 |
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| CDS CCA 90 bp | GTGGTGAGATGGCCTCCATGTTCTCCCTGGGCACGCGGAGGGCATTaGTGTCTATGTAGTAGGTGGGCCCGCCCTGCTTGCCTTTGTCAN | + |
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Preference number: 5 (lower is better) Translates to: VVRWPPCSPWARGGH*CLCSRWARPACLCX Trigger: NTGACAAAGGCAAGCAGGGCGGGCCCACCTACTACATAGACACCAATGCCCTCCGCGTGCCCAGGGAGAACATGGAGGCCATCTCACCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193231.6 |
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| CDS GCA 90 bp | CGCGGAGGGCATTGGTGTCTATGTAGTAGGTGGGCCCGCCCTGCTTaGCTTTGTCACCATCAATCTCCATCATTGTACTTCCGTCATCTC | + |
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Preference number: 5 (lower is better) Translates to: RGGHWCLCSRWARPA*LCHHQSPSLYFRHL Trigger: GAGATGACGGAAGTACAATGATGGAGATTGATGGTGACAAAGGCAAGCAGGGCGGGCCCACCTACTACATAGACACCAATGCCCTCCGCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029214.14 ENSMUST00000194781.6 |
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| CDS TCA 90 bp | GACGGTTGGCATCTGTGCAGCCACTTGTTCGTCGTAGGTGGAGTCTaGCACCTGAAGAACGGAAGCTTGAAAATCCTGGATGACGCAGTT | + |
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Preference number: 5 (lower is better) Translates to: DGWHLCSHLFVVGGV*HLKNGSLKILDDAV Trigger: AACTGCGTCATCCAGGATTTTCAAGCTTCCGTTCTTCAGGTGTCAGACTCCACCTACGACGAACAAGTGGCTGCACAGATGCCAACCGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR CAA 90 bp | GGCAGTAACTTGTACTTGTCAATACAGAGTAATTCCACCAACCAACCCCCAGGAGTGGGCCCGCCCTGCTaGCCTTTGTCACCATCAATC | + |
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Preference number: 5 (lower is better) Translates to: GSNLYLSIQSNSTNQPPGVGPPC*PLSPSI Trigger: GATTGATGGTGACAAAGGCAAGCAGGGCGGGCCCAC...TCCTGGGGGTTGGTTGGTGGAATTACTCTGTATTGACAAGTACAAGTTACTGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR CAA 90 bp | TCTTTTCCTGAGTGTACTAAAGCTACAGACGTTGAGGTGACGGGCAGGCAGGGTCTGAAGAACGGAAGCTaGAAAATCCTGGATGACGCA | + |
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Preference number: 5 (lower is better) Translates to: SFPECTKATDVEVTGRQGLKNGS*KILDDA Trigger: TGCGTCATCCAGGATTTTCAAGCTTCCGTTCTTCAG...ACCCTGCCTGCCCGTCACCTCAACGTCTGTAGCTTTAGTACACTCAGGAAAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR CAA 90 bp | TCTTTTCCTGAGTGTACTAAAGCTACAGACGTTGAGGTGACGGGCAGGCAGGGTAGGCTGGCTTCGGATTaGACATGCATCTTGTATGTA | + |
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Preference number: 5 (lower is better) Translates to: SFPECTKATDVEVTGRQGRLASD*TCILYV Trigger: TACATACAAGATGCATGTCAAATCCGAAGCCAGCCT...ACCCTGCCTGCCCGTCACCTCAACGTCTGTAGCTTTAGTACACTCAGGAAAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR CAA 90 bp | TCTTTTCCTGAGTGTACTAAAGCTACAGACGTTGAGGTGACGGGCAGGCAGGGTCATCAATCTCCATCATaGTACTTCCGTCATCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: SFPECTKATDVEVTGRQGHQSPS*YFRHLS Trigger: AGAGAGATGACGGAAGTACAATGATGGAGATTGATG...ACCCTGCCTGCCCGTCACCTCAACGTCTGTAGCTTTAGTACACTCAGGAAAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR CAA 90 bp | TCTTTTCCTGAGTGTACTAAAGCTACAGACGTTGAGGTGACGGGCAGGCAGGGTTTTCACAATGCCTTGTaGAAGAACATAGCCATCGTG | + |
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Preference number: 5 (lower is better) Translates to: SFPECTKATDVEVTGRQGFHNAL*KNIAIV Trigger: CACGATGGCTATGTTCTTCAACAAGGCATTGTGAAA...ACCCTGCCTGCCCGTCACCTCAACGTCTGTAGCTTTAGTACACTCAGGAAAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR CAA 90 bp | GGCAGTAACTTGTACTTGTCAATACAGAGTAATTCCACCAACCAACCCCCAGGACCACCGTCGTGTTGTTaGCAATCAGTTTCAACCGCA | + |
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Preference number: 5 (lower is better) Translates to: GSNLYLSIQSNSTNQPPGPPSCC*QSVSTA Trigger: TGCGGTTGAAACTGATTGCAAACAACACGACGGTGG...TCCTGGGGGTTGGTTGGTGGAATTACTCTGTATTGACAAGTACAAGTTACTGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR CAA 90 bp | GGCAGTAACTTGTACTTGTCAATACAGAGTAATTCCACCAACCAACCCCCAGGAGACAGTCCCTTTACGTaGGAAGGGTCAAATAACCCT | + |
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Preference number: 5 (lower is better) Translates to: GSNLYLSIQSNSTNQPPGDSPFT*EGSNNP Trigger: AGGGTTATTTGACCCTTCCAACGTAAAGGGACTGTC...TCCTGGGGGTTGGTTGGTGGAATTACTCTGTATTGACAAGTACAAGTTACTGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS-3UTR CAA 90 bp | GTCCAAAATCAGCCCAGTAGAACGACCATTAGCAAATGCCGTCAAAACTGCAGTAGGCTGGCTTCGGATTaGACATGCATCTTGTATGTA | + |
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Preference number: 5 (lower is better) Translates to: VQNQPSRTTISKCRQNCSRLASD*TCILYV Trigger: TACATACAAGATGCATGTCAAATCCGAAGCCAGCCT...ACTGCAGTTTTGACGGCATTTGCTAATGGTCGTTCTACTGGGCTGATTTTGGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000193615.2 |
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| CDS GCA 90 bp | ACCATTAGCAAATGCCGTCAAAACTGCAGTTTTGCAAAGGAAGAATaGAGGGATGCTGTAGTGCTCAAACATCAACTCTGTCAGTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: TISKCRQNCSFAKEE*RDAVVLKHQLCQFL Trigger: GAGAAACTGACAGAGTTGATGTTTGAGCACTACAGCATCCCTGCATTCTTCCTTTGCAAAACTGCAGTTTTGACGGCATTTGCTAATGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029214.14 ENSMUST00000126144.3 ENSMUST00000194781.6 |
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| CDS-3UTR CAA 90 bp | AGCATAGGCAGTAACTTGTACTTGTCAATACAGAGTAATTCCACCAACCAACCCGGATTTCACAATGCCTaGTTGAAGAACATAGCCATC | + |
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Preference number: 5 (lower is better) Translates to: SIGSNLYLSIQSNSTNQPGFHNA*LKNIAI Trigger: GATGGCTATGTTCTTCAACAAGGCATTGTGAAATCC...GGGTTGGTTGGTGGAATTACTCTGTATTGACAAGTACAAGTTACTGCCTATGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS CCA 72 bp | TGGCCTCCATGTTCTCCCTGGGCACGCGGAGGGCATTaGTGTCTATGTAGTAGGTGGGCCCGCCCTGCTTGC | + |
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Preference number: 6 (lower is better) Translates to: WPPCSPWARGGH*CLCSRWARPAC Trigger: GCAAGCAGGGCGGGCCCACCTACTACATAGACACCAATGCCCTCCGCGTGCCCAGGGAGAACATGGAGGCCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029214.14 ENSMUST00000126144.3 ENSMUST00000193231.6 ENSMUST00000194781.6 |
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| CDS CAA 90 bp | TTCCTCCTGCTACGATCACACTGCCGTAGAGACCCCATGCCATTCTaGAGTGGTGAGATGGCCTCCATGTTCTCCCTGGGCACGCGGAGG | + |
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Preference number: 6 (lower is better) Translates to: FLLLRSHCRRDPMPF*SGEMASMFSLGTRR Trigger: CCTCCGCGTGCCCAGGGAGAACATGGAGGCCATCTCACCACTCAAGAATGGCATGGGGTCTCTACGGCAGTGTGATCGTAGCAGGAGGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193231.6 |
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| CDS TCA 72 bp | ACTATCCCAGTCTTCAACCATGCCATTCTTGAGTGGTaGGATGGCCTCCATGTTCTCCCTGGGCACGCGGAG | + |
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Preference number: 6 (lower is better) Translates to: TIPVFNHAILEW*DGLHVLPGHAE Trigger: CTCCGCGTGCCCAGGGAGAACATGGAGGCCATCTCACCACTCAAGAATGGCATGGTTGAAGACTGGGATAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029214.14 ENSMUST00000126144.3 ENSMUST00000194781.6 |
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| CDS TCA 72 bp | TCGATGTCACACATTCCGACGCTGGTTGTGACAACGTaGCTGACTCCCAGCATCGTGTTCCCAGACAGTCCC | + |
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Preference number: 6 (lower is better) Translates to: SMSHIPTLVVTT*LTPSIVFPDSP Trigger: GGGACTGTCTGGGAACACGATGCTGGGAGTCAGTCACGTTGTCACAACCAGCGTCGGAATGTGTGACATCGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS CCA 72 bp | GTTTCCTCCTGCTACGATCACACTGCCGTAGAGACCTaGTCTGATGTCGATGTCACACATTCCGACGCTGGT | + |
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Preference number: 6 (lower is better) Translates to: VSSCYDHTAVET*SDVDVTHSDAG Trigger: ACCAGCGTCGGAATGTGTGACATCGACATCAGACCAGGTCTCTACGGCAGTGTGATCGTAGCAGGAGGAAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS GCA 72 bp | CTGGTGTTCCACGGTGCTTCCGACATGAGAACAGGATaGAGGCTGGCTTCGGATTTGACATGCATCTTGTAT | + |
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Preference number: 6 (lower is better) Translates to: LVFHGASDMRTG*RLASDLTCILY Trigger: ATACAAGATGCATGTCAAATCCGAAGCCAGCCTGCATCCTGTTCTCATGTCGGAAGCACCGTGGAACACCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029214.14 ENSMUST00000126144.3 ENSMUST00000193615.2 ENSMUST00000194781.6 |
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| CDS GCA 72 bp | TCTGTATTAGCGTGTTTCCTCCTGCTACGATCACACTaGCGTAGAGACCCCATGCCATTCTTGAGTGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: SVLACFLLLRSH*RRDPMPFLSGE Trigger: CTCACCACTCAAGAATGGCATGGGGTCTCTACGGCAGTGTGATCGTAGCAGGAGGAAACACGCTAATACAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193231.6 |
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| CDS CCA 72 bp | CGGTTGGCATCTGTGCAGCCACTTGTTCGTCGTAGGTaGAGTCTGACACCTGAAGAACGGAAGCTTGAAAAT | + |
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Preference number: 6 (lower is better) Translates to: RLASVQPLVRRR*SLTPEERKLEN Trigger: ATTTTCAAGCTTCCGTTCTTCAGGTGTCAGACTCCACCTACGACGAACAAGTGGCTGCACAGATGCCAACCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS TCA 72 bp | CATCTGTGCAGCCACTTGTTCGTCGTAGGTGGAGTCTaGCACCTGAAGAACGGAAGCTTGAAAATCCTGGAT | + |
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Preference number: 6 (lower is better) Translates to: HLCSHLFVVGGV*HLKNGSLKILD Trigger: ATCCAGGATTTTCAAGCTTCCGTTCTTCAGGTGTCAGACTCCACCTACGACGAACAAGTGGCTGCACAGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS GCA 72 bp | CATTGGTGTCTATGTAGTAGGTGGGCCCGCCCTGCTTaGCTTTGTCACCATCAATCTCCATCATTGTACTTC | + |
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Preference number: 6 (lower is better) Translates to: HWCLCSRWARPA*LCHHQSPSLYF Trigger: GAAGTACAATGATGGAGATTGATGGTGACAAAGGCAAGCAGGGCGGGCCCACCTACTACATAGACACCAATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029214.14 ENSMUST00000194781.6 |
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| CDS TCA 72 bp | CTGACACCTGAAGAACGGAAGCTTGAAAATCCTGGATaGCGCAGTTGCACATGTAATTGTGCCAAGACCTTG | + |
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Preference number: 6 (lower is better) Translates to: LTPEERKLENPG*RSCTCNCAKTL Trigger: CAAGGTCTTGGCACAATTACATGTGCAACTGCGTCATCCAGGATTTTCAAGCTTCCGTTCTTCAGGTGTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029214.14 |
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| CDS GCA 72 bp | AAATGCCGTCAAAACTGCAGTTTTGCAAAGGAAGAATaGAGGGATGCTGTAGTGCTCAAACATCAACTCTGT | + |
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Preference number: 6 (lower is better) Translates to: KCRQNCSFAKEE*RDAVVLKHQLC Trigger: ACAGAGTTGATGTTTGAGCACTACAGCATCCCTGCATTCTTCCTTTGCAAAACTGCAGTTTTGACGGCATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029214.14 ENSMUST00000126144.3 ENSMUST00000194781.6 |
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