Pregenerated sensors for ACTG2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000059430

Ensembl transcript IDs: ENSMUST00000075161.12, ENSMUST00000121731.8

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR GCA 90 bp	AATGATCTGTGGCTGGTGACAGCAGTCTTGTGGGGATCCCCAGAGAAGGCCCTCTTAGGATCCCACGCTTaGTCTGAGCCTCGTCCCCCA	+
Preference number: 4 (lower is better) Translates to: NDLWLVTAVLWGSPEKALLGSHA*SEPRPP Trigger: TGGGGGACGAGGCTCAGAGCAAGCGTGGGATCCTAA...GAGGGCCTTCTCTGGGGATCCCCACAAGACTGCTGTCACCAGCCACAGATCATT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000075161.12 ENSMUST00000121731.8
CDS-3UTR GCA 90 bp	AATGATCTGTGGCTGGTGACAGCAGTCTTGTGGGGATCCCCAGAGAAGGCCCTCGTGAGCAGGGTGGGGTaGTCTTCTGGTGCTACTCGA	+
Preference number: 4 (lower is better) Translates to: NDLWLVTAVLWGSPEKALVSRVG*SSGATR Trigger: TCGAGTAGCACCAGAAGAGCACCCCACCCTGCTCAC...GAGGGCCTTCTCTGGGGATCCCCACAAGACTGCTGTCACCAGCCACAGATCATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000075161.12 ENSMUST00000121731.8
CDS-3UTR GCA 90 bp	AATGATCTGTGGCTGGTGACAGCAGTCTTGTGGGGATCCCCAGAGAAGGCCCTCCCGAATCCAGAACGATaGCTGTGGTACGGCCGGATG	+
Preference number: 4 (lower is better) Translates to: NDLWLVTAVLWGSPEKALPNPER*LWYGRM Trigger: CATCCGGCCGTACCACAGGCATCGTTCTGGATTCGG...GAGGGCCTTCTCTGGGGATCCCCACAAGACTGCTGTCACCAGCCACAGATCATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075161.12 ENSMUST00000121731.8
CDS-3UTR TCA 90 bp	AATGATCTGTGGCTGGTGACAGCAGTCTTGTGGGGATCCCCAGAGAAGGCCCTCGCCGGATGCATAGAGTaGGAGCACAGCCTGAATAGC	+
Preference number: 4 (lower is better) Translates to: NDLWLVTAVLWGSPEKALAGCIE*EHSLNS Trigger: GCTATTCAGGCTGTGCTCTCACTCTATGCATCCGGC...GAGGGCCTTCTCTGGGGATCCCCACAAGACTGCTGTCACCAGCCACAGATCATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075161.12 ENSMUST00000121731.8
CDS-3UTR TCA 90 bp	AATGATCTGTGGCTGGTGACAGCAGTCTTGTGGGGATCCCCAGAGAAGGCCCTCCATACTCTGGCTTGCTaGTCCACATTTGCTGGAAGG	+
Preference number: 4 (lower is better) Translates to: NDLWLVTAVLWGSPEKALHTLAC*STFAGR Trigger: CCTTCCAGCAAATGTGGATCAGCAAGCCAGAGTATG...GAGGGCCTTCTCTGGGGATCCCCACAAGACTGCTGTCACCAGCCACAGATCATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075161.12 ENSMUST00000121731.8
CDS-3UTR GCA 90 bp	AATGATCTGTGGCTGGTGACAGCAGTCTTGTGGGGATCCCCAGAGAAGGCCCTCGGGGTGCTCTTCTGGTaGTACTCGAAGCTCATTGTA	+
Preference number: 4 (lower is better) Translates to: NDLWLVTAVLWGSPEKALGVLFW*YSKLIV Trigger: TACAATGAGCTTCGAGTAGCACCAGAAGAGCACCCC...GAGGGCCTTCTCTGGGGATCCCCACAAGACTGCTGTCACCAGCCACAGATCATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000075161.12 ENSMUST00000121731.8
CDS-3UTR CCA 90 bp	AATGATCTGTGGCTGGTGACAGCAGTCTTGTGGGGATCCCCAGAGAAGGCCCTCTTTCTCTCTCAGCTGTaGTCACAAAGGAATAGCCTC	+
Preference number: 4 (lower is better) Translates to: NDLWLVTAVLWGSPEKALFLSQL*SQRNSL Trigger: GAGGCTATTCCTTTGTGACCACAGCTGAGAGAGAAA...GAGGGCCTTCTCTGGGGATCCCCACAAGACTGCTGTCACCAGCCACAGATCATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075161.12 ENSMUST00000121731.8
CDS-3UTR CAA 90 bp	AATGATCTGTGGCTGGTGACAGCAGTCTTGTGGGGATCCCCAGAGAAGGCCCTCTGTTCAATAGGGTACTaGAGAGTTAGGATCCCACGC	+
Preference number: 5 (lower is better) Translates to: NDLWLVTAVLWGSPEKALCSIGY*RVRIPR Trigger: GCGTGGGATCCTAACTCTCAAGTACCCTATTGAACA...GAGGGCCTTCTCTGGGGATCCCCACAAGACTGCTGTCACCAGCCACAGATCATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075161.12 ENSMUST00000121731.8

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu