Pregenerated sensors for ACTG1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000062825

Ensembl transcript IDs: ENSMUST00000062147.14, ENSMUST00000071555.13, ENSMUST00000106215.11

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	TGCCAGCCTCAGGAAATCCTGGAAGTCTGCTGTTGGTTAATACCCTaGACAGATCACTCAGTGGTGCTCACAGAGATCCACCAGGCTGGG	+
Preference number: 1 (lower is better) Translates to: CQPQEILEVCCWLIP*TDHSVVLTEIHQAG Trigger: CCCAGCCTGGTGGATCTCTGTGAGCACCACTGAGTGATCTGTGCAGGGTATTAACCAACAGCAGACTTCCAGGATTTCCTGAGGCTGGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071555.13 ENSMUST00000106215.11
3UTR-3UTR CAA 90 bp	CAGAGATCCACCAGGCTGGGGCTTTCTCATCTACAGCGTGCTCTCCCCAGCCCCATGAGGTGTGTACATTaGCCAGGGCAAATTGATACT	+
Preference number: 3 (lower is better) Translates to: QRSTRLGLSHLQRALPSPMRCVH*PGQIDT Trigger: AGTATCAATTTGCCCTGGCAAATGTACACACCTCAT...GGGGCTGGGGAGAGCACGCTGTAGATGAGAAAGCCCCAGCCTGGTGGATCTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000062147.14 ENSMUST00000071555.13 ENSMUST00000106215.11
3UTR-3UTR CAA 90 bp	CAGCGTGCTCTCCCCAGCCCCCAAGTGACCGAGCCACATGAACTAAGGACTAAAATGAGGTGTGTACATTaGCCAGGGCAAATTGATACT	+
Preference number: 3 (lower is better) Translates to: QRALPSPQVTEPHELRTKMRCVH*PGQIDT Trigger: AGTATCAATTTGCCCTGGCAAATGTACACACCTCAT...TTTAGTCCTTAGTTCATGTGGCTCGGTCACTTGGGGGCTGGGGAGAGCACGCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000062147.14 ENSMUST00000071555.13 ENSMUST00000106215.11
CDS-3UTR GCA 90 bp	CAGCGTGCTCTCCCCAGCCCCCAAGTGACCGAGCCACATGAACTAAGGACTAAAGCAGTAGCCATTTCTTaGTCAAAATCCAGGGCAACA	+
Preference number: 4 (lower is better) Translates to: QRALPSPQVTEPHELRTKAVAIS*SKSRAT Trigger: TGTTGCCCTGGATTTTGAGCAAGAAATGGCTACTGC...TTTAGTCCTTAGTTCATGTGGCTCGGTCACTTGGGGGCTGGGGAGAGCACGCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000071555.13 ENSMUST00000106215.11
CDS-3UTR TCA 90 bp	ATTGATACTTCAATATCAGCTCATGCAGCAGATGCCTGGCACCTGCTCAGTCCACTCCAAGGAGGAAGATaGTGCAGCAGTAGCCATTTC	+
Preference number: 4 (lower is better) Translates to: IDTSISAHAADAWHLLSPLQGGR*CSSSHF Trigger: GAAATGGCTACTGCTGCATCATCTTCCTCCTTGGAG...TGGACTGAGCAGGTGCCAGGCATCTGCTGCATGAGCTGATATTGAAGTATCAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071555.13 ENSMUST00000106215.11
CDS-3UTR GCA 90 bp	CAGCCTCAGGAAATCCTGGAAGTCTGCTGTTGGTTAATACCCTGCACAGATCACGCAGTAGCCATTTCTTaGTCAAAATCCAGGGCAACA	+
Preference number: 4 (lower is better) Translates to: QPQEILEVCCWLIPCTDHAVAIS*SKSRAT Trigger: TGTTGCCCTGGATTTTGAGCAAGAAATGGCTACTGC...GTGATCTGTGCAGGGTATTAACCAACAGCAGACTTCCAGGATTTCCTGAGGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071555.13 ENSMUST00000106215.11