RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ACTE1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031085

Ensembl transcript IDs: ENSMUST00000134455.3, ENSMUST00000152910.3, ENSMUST00000207235.2, ENSMUST00000207482.2, ENSMUST00000207630.2, ENSMUST00000207642.2, ENSMUST00000208038.2, ENSMUST00000208153.2, ENSMUST00000208457.2, ENSMUST00000208625.2, ENSMUST00000208761.2

Found 268 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCCTGTCCCTGGGTGGCCTGTGGGCCAGGACTATACTGGAAAGAATaGCTTTGTCCTTGTCCGGCCTCTCTGTTCCCTCCAGGCCTCCCA +
Preference number: 1 (lower is better)
Translates to: ACPWVACGPGLYWKE*LCPCPASLFPPGLP
Trigger: TGGGAGGCCTGGAGGGAACAGAGAGGCCGGACAAGGACAAAGTCATTCTTTCCAGTATAGTCCTGGCCCACAGGCCACCCAGGGACAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207642.2
ENSMUST00000208625.2
3UTR CCA 90 bp TCGAATAGGATCTGGGGAGGAAGATTGGCATGCTGGCTGGCCAGGTaGCACACACTGCCCCCGTGCTCAGGAGTACATCTTGCAGCAGGC +
Preference number: 1 (lower is better)
Translates to: SNRIWGGRLACWLAR*HTLPPCSGVHLAAG
Trigger: GCCTGCTGCAAGATGTACTCCTGAGCACGGGGGCAGTGTGTGCCACCTGGCCAGCCAGCATGCCAATCTTCCTCCCCAGATCCTATTCGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR CCA 90 bp TGGTGGGATTTCTCACAGGACATGATGCTCTCCAGGGTGAGCATGTaGATCCCTGGGTTGGCTCTCTCCAGGAGGCTGGTGTCGAAGAGC +
Preference number: 1 (lower is better)
Translates to: WWDFSQDMMLSRVSM*IPGLALSRRLVSKS
Trigger: GCTCTTCGACACCAGCCTCCTGGAGAGAGCCAACCCAGGGATCCACATGCTCACCCTGGAGAGCATCATGTCCTGTGAGAAATCCCACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR CCA 90 bp CCAACCCCTCTAGCACATTCTGGTGGCCTGTCCCTGGGTGGCCTGTaGGCCAGGACTATACTGGAAAGAATGACTTTGTCCTTGTCCGGC +
Preference number: 1 (lower is better)
Translates to: PTPLAHSGGLSLGGL*ARTILERMTLSLSG
Trigger: GCCGGACAAGGACAAAGTCATTCTTTCCAGTATAGTCCTGGCCCACAGGCCACCCAGGGACAGGCCACCAGAATGTGCTAGAGGGGTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208625.2
3UTR CCA 90 bp GCTGCAGTGGTGCCAAGCCTCTACCTGGGCTTCATGACACAGCACTaGGGCCTTAGACAGACTCAGTTATGCACTGAGTCACCAGCACCT +
Preference number: 1 (lower is better)
Translates to: AAVVPSLYLGFMTQH*GLRQTQLCTESPAP
Trigger: AGGTGCTGGTGACTCAGTGCATAACTGAGTCTGTCTAAGGCCCCAGTGCTGTGTCATGAAGCCCAGGTAGAGGCTTGGCACCACTGCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR CCA 90 bp CCAATGAACCAGTCTTGTTCTCCCAACCCCTCTAGCACATTCTGGTaGCCTGTCCCTGGGTGGCCTGTGGGCCAGGACTATACTGGAAAG +
Preference number: 1 (lower is better)
Translates to: PMNQSCSPNPSSTFW*PVPGWPVGQDYTGK
Trigger: CTTTCCAGTATAGTCCTGGCCCACAGGCCACCCAGGGACAGGCCACCAGAATGTGCTAGAGGGGTTGGGAGAACAAGACTGGTTCATTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208625.2
3UTR TCA 90 bp ACTGTCGAGGAGCTGCAGTGGTGCCAAGCCTCTACCTGGGCTTCATaGCACAGCACTGGGGCCTTAGACAGACTCAGTTATGCACTGAGT +
Preference number: 1 (lower is better)
Translates to: TVEELQWCQASTWAS*HSTGALDRLSYALS
Trigger: ACTCAGTGCATAACTGAGTCTGTCTAAGGCCCCAGTGCTGTGTCATGAAGCCCAGGTAGAGGCTTGGCACCACTGCAGCTCCTCGACAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR GCA 90 bp ACATGTCTGATTCTCCAAGTCGTCAGACTGGCTGGCTTCGGAGTCTaGCTCAGAAGGTCCAGTAGTCTCCGACGGCATCACCTACTGTCG +
Preference number: 1 (lower is better)
Translates to: TCLILQVVRLAGFGV*LRRSSSLRRHHLLS
Trigger: CGACAGTAGGTGATGCCGTCGGAGACTACTGGACCTTCTGAGGCAGACTCCGAAGCCAGCCAGTCTGACGACTTGGAGAATCAGACATGT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR GCA 90 bp GGGAGACTAAGCCTGGGGTGGGCAGCGGCCATCTCTAGCTGGCTCTaGTGTGAAGTGGCTGTTCTAGCTTCATTCTGTGGCTGTGATAAA +
Preference number: 1 (lower is better)
Translates to: GRLSLGWAAAISSWL*CEVAVLASFCGCDK
Trigger: TTTATCACAGCCACAGAATGAAGCTAGAACAGCCACTTCACAGCAGAGCCAGCTAGAGATGGCCGCTGCCCACCCCAGGCTTAGTCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR TCA 90 bp AGACGGCACAGACAGAATGGTGGCCACCATCTCTTCACACATGTCTaGTTCTCCAAGTCGTCAGACTGGCTGGCTTCGGAGTCTGCCTCA +
Preference number: 1 (lower is better)
Translates to: RRHRQNGGHHLFTHV*FSKSSDWLASESAS
Trigger: TGAGGCAGACTCCGAAGCCAGCCAGTCTGACGACTTGGAGAATCAGACATGTGTGAAGAGATGGTGGCCACCATTCTGTCTGTGCCGTCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR GCA 90 bp ACCTTCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTTCTaGATCCGGAATCGTAGGCCAGTACAGGCACTGGTGCCACCAGTC +
Preference number: 1 (lower is better)
Translates to: TFTQKSGETTFAISF*IRNRRPVQALVPPV
Trigger: GACTGGTGGCACCAGTGCCTGTACTGGCCTACGATTCCGGATGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR CCA 90 bp AGAAGGAGTAATGCCAAATCTGGTGGCCTGTCCCTGGGTGGCCTGTaGGCCAGGACTATACTGGAAAGAATGACTTTGTCCTTGTCCGGC +
Preference number: 1 (lower is better)
Translates to: RRSNAKSGGLSLGGL*ARTILERMTLSLSG
Trigger: GCCGGACAAGGACAAAGTCATTCTTTCCAGTATAGTCCTGGCCCACAGGCCACCCAGGGACAGGCCACCAGATTTGGCATTACTCCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207642.2
3UTR CCA 90 bp TGTTCTCCCAACCCCTCTAGCACATTCTGGTGGCCTGTCCCTGGGTaGCCTGTGGGCCAGGACTATACTGGAAAGAATGACTTTGTCCTT +
Preference number: 1 (lower is better)
Translates to: CSPNPSSTFWWPVPG*PVGQDYTGKNDFVL
Trigger: AAGGACAAAGTCATTCTTTCCAGTATAGTCCTGGCCCACAGGCCACCCAGGGACAGGCCACCAGAATGTGCTAGAGGGGTTGGGAGAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208625.2
3UTR CCA 90 bp AGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATaGCTAAGGCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATG +
Preference number: 1 (lower is better)
Translates to: RRPCSELVLIMPCSV*LRPSLGMMMLAQVM
Trigger: CATCACCTGAGCCAACATCATCATGCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000152910.3
ENSMUST00000207482.2
ENSMUST00000207630.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR GCA 90 bp AGGAGGCTGGTGTCGAAGAGCACCTCTGAGCACATGAAAGCCTCTTaGCCTAGGTTGATTTCCTTGCCATCTGGCAGTGTGAATTTCTTC +
Preference number: 1 (lower is better)
Translates to: RRLVSKSTSEHMKAS*PRLISLPSGSVNFF
Trigger: GAAGAAATTCACACTGCCAGATGGCAAGGAAATCAACCTAGGGCAAGAGGCTTTCATGTGCTCAGAGGTGCTCTTCGACACCAGCCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208153.2
ENSMUST00000208457.2
ENSMUST00000208625.2
ENSMUST00000208761.2
3UTR GCA 90 bp TCAGGAGAAAGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTaGTCAGTATGGCTAAGGCCCAGCCTAGGCATGATGATGTTGGCT +
Preference number: 1 (lower is better)
Translates to: SGERRPCSELVLIMP*SVWLRPSLGMMMLA
Trigger: AGCCAACATCATCATGCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCTTTCTCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000152910.3
ENSMUST00000207482.2
ENSMUST00000207630.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR CCA 90 bp GAGGGAGGGAAGACAAGATGGAGGCACCTATCCAGGCACTATACTTaGCATATGGAGAGGCAGTTACCTTCACACAGAAGTCTGGAGAGA +
Preference number: 1 (lower is better)
Translates to: EGGKTRWRHLSRHYT*HMERQLPSHRSLER
Trigger: TCTCTCCAGACTTCTGTGTGAAGGTAACTGCCTCTCCATATGCCAAGTATAGTGCCTGGATAGGTGCCTCCATCTTGTCTTCCCTCCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR GCA 90 bp CTGGGCTTCATGACACAGCACTGGGGCCTTAGACAGACTCAGTTATaGACTGAGTCACCAGCACCTAATTTAGAGATGTTCCCTGTCACA +
Preference number: 1 (lower is better)
Translates to: LGFMTQHWGLRQTQL*TESPAPNLEMFPVT
Trigger: TGTGACAGGGAACATCTCTAAATTAGGTGCTGGTGACTCAGTGCATAACTGAGTCTGTCTAAGGCCCCAGTGCTGTGTCATGAAGCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR CCA 90 bp GGAAGACAAGATGGAGGCACCTATCCAGGCACTATACTTGGCATATaGAGAGGCAGTTACCTTCACACAGAAGTCTGGAGAGACCACCTT +
Preference number: 1 (lower is better)
Translates to: GRQDGGTYPGTILGI*RGSYLHTEVWRDHL
Trigger: AAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAACTGCCTCTCCATATGCCAAGTATAGTGCCTGGATAGGTGCCTCCATCTTGTCTTCC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR GCA 90 bp CCAGCACCTAATTTAGAGATGTTCCCTGTCACAGTAACCACCTTGTaGTCCCTGCTGTCAGATCCCACAGTGCATCACTTCACTGTAAGA +
Preference number: 1 (lower is better)
Translates to: PAPNLEMFPVTVTTL*SLLSDPTVHHFTVR
Trigger: TCTTACAGTGAAGTGATGCACTGTGGGATCTGACAGCAGGGAGCACAAGGTGGTTACTGTGACAGGGAACATCTCTAAATTAGGTGCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR GCA 90 bp GCCCTTGTTACACACTTTTACTGTCCTTCAGGAGAAAGGAGGCCTTaGTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGG +
Preference number: 1 (lower is better)
Translates to: ALVTHFYCPSGERRP*SELVLIMPCSVWLR
Trigger: CCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCTTTCTCCTGAAGGACAGTAAAAGTGTGTAACAAGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000207482.2
ENSMUST00000208038.2
ENSMUST00000208457.2
3UTR CCA 90 bp ATTGTTCAGTTCAGGAGTACCTTCAATCAGACGGCACAGACAGAATaGTGGCCACCATCTCTTCACACATGTCTGATTCTCCAAGTCGTC +
Preference number: 1 (lower is better)
Translates to: IVQFRSTFNQTAQTE*WPPSLHTCLILQVV
Trigger: GACGACTTGGAGAATCAGACATGTGTGAAGAGATGGTGGCCACCATTCTGTCTGTGCCGTCTGATTGAAGGTACTCCTGAACTGAACAAT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR CCA 90 bp AAGCATCTTCTAAATATGACAGAAGGGCCAATTTCCAAATACTCATaGTTTGTGATCCACATGTCCTTGAACAGAGGGAGGGAAGACAAG +
Preference number: 1 (lower is better)
Translates to: KHLLNMTEGPISKYS*FVIHMSLNRGREDK
Trigger: CTTGTCTTCCCTCCCTCTGTTCAAGGACATGTGGATCACAAACCATGAGTATTTGGAAATTGGCCCTTCTGTCATATTTAGAAGATGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp CATGTGGATCCCTGGGTTGGCTCTCTCCAGGAGGCTGGTGTCGAAGAGCACCTCTGCTGGCTGGCCAGGTaGCACACACTGCCCCCGTGC +
Preference number: 2 (lower is better)
Translates to: HVDPWVGSLQEAGVEEHLCWLAR*HTLPPC
Trigger: GCACGGGGGCAGTGTGTGCCACCTGGCCAGCCAGCA...GAGGTGCTCTTCGACACCAGCCTCCTGGAGAGAGCCAACCCAGGGATCCACATG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR CAA 90 bp GGCTGGCCAGGTGGCACACACTGCCCCCGTGCTCAGGAGTACATCTaGCAGCAGGCTGTGGATTCAGGGAGACTAAGCCTGGGGTGGGCA +
Preference number: 2 (lower is better)
Translates to: GWPGGTHCPRAQEYI*QQAVDSGRLSLGWA
Trigger: TGCCCACCCCAGGCTTAGTCTCCCTGAATCCACAGCCTGCTGCAAGATGTACTCCTGAGCACGGGGGCAGTGTGTGCCACCTGGCCAGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR-3UTR GCA 90 bp TCACAGGACATGATGCTCTCCAGGGTGAGCATGTGGATCCCTGGGTTGGCTCTCCCAGGTGGCACACACTaGCCCCGTGCTCAGGAGTAC +
Preference number: 2 (lower is better)
Translates to: SQDMMLSRVSMWIPGLALPGGTH*PRAQEY
Trigger: GTACTCCTGAGCACGGGGGCAGTGTGTGCCACCTGG...GAGAGCCAACCCAGGGATCCACATGCTCACCCTGGAGAGCATCATGTCCTGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR-3UTR GCA 90 bp GATTTCTCACAGGACATGATGCTCTCCAGGGTGAGCATGTGGATCCCTGGGTTGCCAGGTGGCACACACTaGCCCCGTGCTCAGGAGTAC +
Preference number: 2 (lower is better)
Translates to: DFSQDMMLSRVSMWIPGLPGGTH*PRAQEY
Trigger: GTACTCCTGAGCACGGGGGCAGTGTGTGCCACCTGG...CAACCCAGGGATCCACATGCTCACCCTGGAGAGCATCATGTCCTGTGAGAAATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp ATGGCTAAGGCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAATGGCCTGTCCCTGGGTaGCCTGTGGGCCAGGACTAT +
Preference number: 2 (lower is better)
Translates to: MAKAQPRHDDVGSGDGTQWPVPG*PVGQDY
Trigger: ATAGTCCTGGCCCACAGGCCACCCAGGGACAGGCCA...TTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGCCTTAGCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207642.2
3UTR CAA 90 bp TCCCTGGGTGGCCTGTGGGCCAGGACTATACTGGAAAGAATGACTTaGTCCTTGTCCGGCCTCTCTGTTCCCTCCAGGCCTCCCACTAAA +
Preference number: 2 (lower is better)
Translates to: SLGGLWARTILERMT*SLSGLSVPSRPPTK
Trigger: TTTAGTGGGAGGCCTGGAGGGAACAGAGAGGCCGGACAAGGACAAAGTCATTCTTTCCAGTATAGTCCTGGCCCACAGGCCACCCAGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207642.2
ENSMUST00000208625.2
3UTR-3UTR CCA 90 bp ATGGCTAAGGCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAATGTGGATCCCTGGGTTaGCTCTCTCCAGGAGGCTGG +
Preference number: 2 (lower is better)
Translates to: MAKAQPRHDDVGSGDGTQCGSLG*LSPGGW
Trigger: CCAGCCTCCTGGAGAGAGCCAACCCAGGGATCCACA...TTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGCCTTAGCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR CAA 90 bp GGTGGCCTGTGGGCCAGGACTATACTGGAAAGAATGACTTTGTCCTaGTCCGGCCTCTCTGTTCCCTCCAGGCCTCCCACTAAAAACTCC +
Preference number: 2 (lower is better)
Translates to: GGLWARTILERMTLS*SGLSVPSRPPTKNS
Trigger: GGAGTTTTTAGTGGGAGGCCTGGAGGGAACAGAGAGGCCGGACAAGGACAAAGTCATTCTTTCCAGTATAGTCCTGGCCCACAGGCCACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000207642.2
ENSMUST00000208625.2
3UTR-3UTR GCA 90 bp AGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCGGAGGAAGATTGGCATaGTGGCTGGCCAGGTGGCAC +
Preference number: 2 (lower is better)
Translates to: RPCSELVLIMPCSVWLRPGGRLA*WLARWH
Trigger: GTGCCACCTGGCCAGCCAGCATGCCAATCTTCCTCC...GGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp GCATGTGGATCCCTGGGTTGGCTCTCTCCAGGAGGCTGGTGTCGAAGAGCACCTACTCGAGGTCAGCTATaGTCTCTAACACATTCCCAT +
Preference number: 2 (lower is better)
Translates to: ACGSLGWLSPGGWCRRAPTRGQL*SLTHSH
Trigger: ATGGGAATGTGTTAGAGACCATAGCTGACCTCGAGT...AGGTGCTCTTCGACACCAGCCTCCTGGAGAGAGCCAACCCAGGGATCCACATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp GGGAGGGAAGACAAGATGGAGGCACCTATCCAGGCACTATACTTGGCATATGGACTCTCTCCAGGAGGCTaGTGTCGAAGAGCACCTCTG +
Preference number: 2 (lower is better)
Translates to: GREDKMEAPIQALYLAYGLSPGG*CRRAPL
Trigger: CAGAGGTGCTCTTCGACACCAGCCTCCTGGAGAGAG...TCCATATGCCAAGTATAGTGCCTGGATAGGTGCCTCCATCTTGTCTTCCCTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp GGCAGTTACCTTCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTTCTGTGTGGATCCCTGGGTTaGCTCTCTCCAGGAGGCTGG +
Preference number: 2 (lower is better)
Translates to: GSYLHTEVWRDHLCHLFLCGSLG*LSPGGW
Trigger: CCAGCCTCCTGGAGAGAGCCAACCCAGGGATCCACA...CAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAACTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp GACGGCACAGACAGAATGGTGGCCACCATCTCTTCACACATGTCTGATTCTCCATCCAAGTCGTCAGACTaGCTGGCTTCGGAGTCTGCC +
Preference number: 2 (lower is better)
Translates to: DGTDRMVATISSHMSDSPSKSSD*LASESA
Trigger: GGCAGACTCCGAAGCCAGCCAGTCTGACGACTTGGA...TGGAGAATCAGACATGTGTGAAGAGATGGTGGCCACCATTCTGTCTGTGCCGTC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR-3UTR CCA 90 bp GGAGGGAAGACAAGATGGAGGCACCTATCCAGGCACTATACTTGGCATATGGAGGCGGCCATCTCTAGCTaGCTCTGCTGTGAAGTGGCT +
Preference number: 2 (lower is better)
Translates to: GGKTRWRHLSRHYTWHMEAAISS*LCCEVA
Trigger: AGCCACTTCACAGCAGAGCCAGCTAGAGATGGCCGC...CTCCATATGCCAAGTATAGTGCCTGGATAGGTGCCTCCATCTTGTCTTCCCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp TATGGAGAGGCAGTTACCTTCACACAGAAGTCTGGAGAGACCACCTTTGCCATCAGACTAAGCCTGGGGTaGGCAGCGGCCATCTCTAGC +
Preference number: 2 (lower is better)
Translates to: YGEAVTFTQKSGETTFAIRLSLG*AAAISS
Trigger: GCTAGAGATGGCCGCTGCCCACCCCAGGCTTAGTCT...GATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAACTGCCTCTCCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp TCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCTCTGGGGAGGAAGATTaGCATGCTGGCTGGCCAGGT +
Preference number: 2 (lower is better)
Translates to: SELVLIMPCSVWLRPSLGSGEED*HAGWPG
Trigger: ACCTGGCCAGCCAGCATGCCAATCTTCCTCCCCAGA...GCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp TCCTTGCCATCTGGCAGTGTGAATTTCTTCTGGAAGGATGGTGCTGAAGTTTTTCTGGTGGCCTGTCCCTaGGTGGCCTGTGGGCCAGGA +
Preference number: 2 (lower is better)
Translates to: SLPSGSVNFFWKDGAEVFLVACP*VACGPG
Trigger: TCCTGGCCCACAGGCCACCCAGGGACAGGCCACCAG...AAAAACTTCAGCACCATCCTTCCAGAAGAAATTCACACTGCCAGATGGCAAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000207642.2
ENSMUST00000208625.2
3UTR-3UTR CCA 90 bp ACTCAGTTATGCACTGAGTCACCAGCACCTAATTTAGAGATGTTCCCTGTCACACTGGTGGCCTGTCCCTaGGTGGCCTGTGGGCCAGGA +
Preference number: 2 (lower is better)
Translates to: TQLCTESPAPNLEMFPVTLVACP*VACGPG
Trigger: TCCTGGCCCACAGGCCACCCAGGGACAGGCCACCAG...TGTGACAGGGAACATCTCTAAATTAGGTGCTGGTGACTCAGTGCATAACTGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208625.2
3UTR-3UTR TCA 90 bp CATGTGGATCCCTGGGTTGGCTCTCTCCAGGAGGCTGGTGTCGAAGAGCACCTCCTGACAACAGTTTCATaGGGTATAGAGTCAGGTCTT +
Preference number: 2 (lower is better)
Translates to: HVDPWVGSLQEAGVEEHLLTTVS*GIESGL
Trigger: AAGACCTGACTCTATACCTCATGAAACTGTTGTCAG...GAGGTGCTCTTCGACACCAGCCTCCTGGAGAGAGCCAACCCAGGGATCCACATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp CTATACTTGGCATATGGAGAGGCAGTTACCTTCACACAGAAGTCTGGAGAGACCTGTGGATCCCTGGGTTaGCTCTCTCCAGGAGGCTGG +
Preference number: 2 (lower is better)
Translates to: LYLAYGEAVTFTQKSGETCGSLG*LSPGGW
Trigger: CCAGCCTCCTGGAGAGAGCCAACCCAGGGATCCACA...GGTCTCTCCAGACTTCTGTGTGAAGGTAACTGCCTCTCCATATGCCAAGTATAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR CAA 90 bp ATGGAGAGGCAGTTACCTTCACACAGAAGTCTGGAGAGACCACCTTaGCCATCTCTTTCTGCATCCGGAATCGTAGGCCAGTACAGGCAC +
Preference number: 2 (lower is better)
Translates to: MERQLPSHRSLERPP*PSLSASGIVGQYRH
Trigger: GTGCCTGTACTGGCCTACGATTCCGGATGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAACTGCCTCTCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR TCA 90 bp GAGAGGCAGTTACCTTCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTAAGCCATCTTTGTCTTaGGGGTCCCAGAGGCCATGC +
Preference number: 2 (lower is better)
Translates to: ERQLPSHRSLERPPLPSLKPSLS*GSQRPC
Trigger: GCATGGCCTCTGGGACCCTCAAGACAAAGATGGCTT...AAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAACTGCCTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134455.3
3UTR-3UTR TCA 90 bp TACCTTCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTTCTGCATCCGGCACCTCTGAGCACATaGAAGCCTCTTGCCCTAGGT +
Preference number: 2 (lower is better)
Translates to: YLHTEVWRDHLCHLFLHPAPLST*KPLALG
Trigger: ACCTAGGGCAAGAGGCTTTCATGTGCTCAGAGGTGC...CGGATGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR GCA 90 bp GATTTCTCACAGGACATGATGCTCTCCAGGGTGAGCATGTGGATCCCTGGGTTGGCAGTAAGTAGAGGATaGAGGACTGGAACTGCTGTC +
Preference number: 2 (lower is better)
Translates to: DFSQDMMLSRVSMWIPGLAVSRG*RTGTAV
Trigger: GACAGCAGTTCCAGTCCTGCATCCTCTACTTACTGC...CAACCCAGGGATCCACATGCTCACCCTGGAGAGCATCATGTCCTGTGAGAAATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134455.3
3UTR-3UTR CCA 90 bp CCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATCCACCAGTCAGATGCTGTCTCCTGACTTaGATCCCTGAGGCCGTGACT +
Preference number: 2 (lower is better)
Translates to: PRHDDVGSGDGTQNPPVRCCLLT*IPEAVT
Trigger: AGTCACGGCCTCAGGGATCCAAGTCAGGAGACAGCA...TCTGACTGGTGGATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134455.3
3UTR-3UTR CCA 90 bp TCACAGGACATGATGCTCTCCAGGGTGAGCATGTGGATCCCTGGGTTGGCTCTCACTCGAGGTCAGCTATaGTCTCTAACACATTCCCAT +
Preference number: 2 (lower is better)
Translates to: SQDMMLSRVSMWIPGLALTRGQL*SLTHSH
Trigger: ATGGGAATGTGTTAGAGACCATAGCTGACCTCGAGT...GAGAGCCAACCCAGGGATCCACATGCTCACCCTGGAGAGCATCATGTCCTGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp GCATGTGGATCCCTGGGTTGGCTCTCTCCAGGAGGCTGGTGTCGAAGAGCACCTAGTGTGAATTTCTTCTaGAAGGATGGTGCTGAAGTT +
Preference number: 2 (lower is better)
Translates to: ACGSLGWLSPGGWCRRAPSVNFF*KDGAEV
Trigger: AACTTCAGCACCATCCTTCCAGAAGAAATTCACACT...AGGTGCTCTTCGACACCAGCCTCCTGGAGAGAGCCAACCCAGGGATCCACATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp GGTCCAGTAGTCTCCGACGGCATCACCTACTGTCGAGGAGCTGCAGTGGTGCCAAGTGTGAATTTCTTCTaGAAGGATGGTGCTGAAGTT +
Preference number: 2 (lower is better)
Translates to: GPVVSDGITYCRGAAVVPSVNFF*KDGAEV
Trigger: AACTTCAGCACCATCCTTCCAGAAGAAATTCACACT...TGGCACCACTGCAGCTCCTCGACAGTAGGTGATGCCGTCGGAGACTACTGGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR-3UTR CCA 90 bp CAGTTACCTTCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTTCTGCACTCTCTCCAGGAGGCTaGTGTCGAAGAGCACCTCTG +
Preference number: 2 (lower is better)
Translates to: QLPSHRSLERPPLPSLSALSPGG*CRRAPL
Trigger: CAGAGGTGCTCTTCGACACCAGCCTCCTGGAGAGAG...TGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp TTGGCATATGGAGAGGCAGTTACCTTCACACAGAAGTCTGGAGAGACCACCTTTCTCTCTCCAGGAGGCTaGTGTCGAAGAGCACCTCTG +
Preference number: 2 (lower is better)
Translates to: LAYGEAVTFTQKSGETTFLSPGG*CRRAPL
Trigger: CAGAGGTGCTCTTCGACACCAGCCTCCTGGAGAGAG...AAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAACTGCCTCTCCATATGCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp CTATACTTGGCATATGGAGAGGCAGTTACCTTCACACAGAAGTCTGGAGAGACCGCGGCCATCTCTAGCTaGCTCTGCTGTGAAGTGGCT +
Preference number: 2 (lower is better)
Translates to: LYLAYGEAVTFTQKSGETAAISS*LCCEVA
Trigger: AGCCACTTCACAGCAGAGCCAGCTAGAGATGGCCGC...GGTCTCTCCAGACTTCTGTGTGAAGGTAACTGCCTCTCCATATGCCAAGTATAG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp AGGCAGTTACCTTCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTTCTTCTGGGGAGGAAGATTaGCATGCTGGCTGGCCAGGT +
Preference number: 2 (lower is better)
Translates to: RQLPSHRSLERPPLPSLSSGEED*HAGWPG
Trigger: ACCTGGCCAGCCAGCATGCCAATCTTCCTCCCCAGA...AGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAACTGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR-3UTR TCA 90 bp GTGGCCACCATCTCTTCACACATGTCTGATTCTCCAAGTCGTCAGACTGGCTGGCTATACTGGAAAGAATaGCTTTGTCCTTGTCCGGCC +
Preference number: 2 (lower is better)
Translates to: VATISSHMSDSPSRQTGWLYWKE*LCPCPA
Trigger: GGCCGGACAAGGACAAAGTCATTCTTTCCAGTATAG...CCAGCCAGTCTGACGACTTGGAGAATCAGACATGTGTGAAGAGATGGTGGCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208625.2
3UTR-3UTR GCA 90 bp CCAATTTCCAAATACTCATGGTTTGTGATCCACATGTCCTTGAACAGAGGGAGGGGAGGAAGATTGGCATaGTGGCTGGCCAGGTGGCAC +
Preference number: 2 (lower is better)
Translates to: PISKYSWFVIHMSLNRGRGGRLA*WLARWH
Trigger: GTGCCACCTGGCCAGCCAGCATGCCAATCTTCCTCC...CCTCCCTCTGTTCAAGGACATGTGGATCACAAACCATGAGTATTTGGAAATTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp GCTGCTTTGTTCATTTATTGTTCAGTTCAGGAGTACCTTCAATCAGACGGCACATGGCCTGTCCCTGGGTaGCCTGTGGGCCAGGACTAT +
Preference number: 2 (lower is better)
Translates to: AALFIYCSVQEYLQSDGTWPVPG*PVGQDY
Trigger: ATAGTCCTGGCCCACAGGCCACCCAGGGACAGGCCA...TGTGCCGTCTGATTGAAGGTACTCCTGAACTGAACAATAAATGAACAAAGCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208625.2
3UTR CAA 90 bp TTTTACTGTCCTTCAGGAGAAAGGAGGCCTTGCTCTGAGCTTGTTTaGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCATG +
Preference number: 2 (lower is better)
Translates to: FYCPSGERRPCSELV*IMPCSVWLRPSLGM
Trigger: CATGCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCTTTCTCCTGAAGGACAGTAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000152910.3
ENSMUST00000207482.2
ENSMUST00000207630.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR TCA 90 bp GGGCCAATTTCCAAATACTCATGGTTTGTGATCCACATGTCCTTGAACAGAGGGCAAGTGCAGGTGTCTTaGGGGATGGTCAGACCCATG +
Preference number: 2 (lower is better)
Translates to: GPISKYSWFVIHMSLNRGQVQVS*GMVRPM
Trigger: CATGGGTCTGACCATCCCTCAAGACACCTGCACTTG...CCCTCTGTTCAAGGACATGTGGATCACAAACCATGAGTATTTGGAAATTGGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134455.3
3UTR-3UTR TCA 90 bp GACGGCACAGACAGAATGGTGGCCACCATCTCTTCACACATGTCTGATTCTCCATGCCATCTGGCAGTGTaGATTTCTTCTGGAAGGATG +
Preference number: 2 (lower is better)
Translates to: DGTDRMVATISSHMSDSPCHLAV*ISSGRM
Trigger: CATCCTTCCAGAAGAAATTCACACTGCCAGATGGCA...TGGAGAATCAGACATGTGTGAAGAGATGGTGGCCACCATTCTGTCTGTGCCGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR-3UTR TCA 90 bp ATGATGTTGGCTCAGGTGATGGAACCCAAAATCCACCAGTCAGAAGCATCTTCTGCACCTCTGAGCACATaGAAGCCTCTTGCCCTAGGT +
Preference number: 2 (lower is better)
Translates to: MMLAQVMEPKIHQSEASSAPLST*KPLALG
Trigger: ACCTAGGGCAAGAGGCTTTCATGTGCTCAGAGGTGC...AGAAGATGCTTCTGACTGGTGGATTTTGGGTTCCATCACCTGAGCCAACATCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR GCA 90 bp CTAAATATGACAGAAGGGCCAATTTCCAAATACTCATGGTTTGTGATCCACATGGGGTCCCAGAGGCCATaGCCTGTCCTGGTGGTGTGG +
Preference number: 2 (lower is better)
Translates to: LNMTEGPISKYSWFVIHMGSQRP*PVLVVW
Trigger: CCACACCACCAGGACAGGGCATGGCCTCTGGGACCC...CATGTGGATCACAAACCATGAGTATTTGGAAATTGGCCCTTCTGTCATATTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134455.3
3UTR-3UTR CCA 90 bp TCACAGGACATGATGCTCTCCAGGGTGAGCATGTGGATCCCTGGGTTGGCTCTCAGTGTGAATTTCTTCTaGAAGGATGGTGCTGAAGTT +
Preference number: 2 (lower is better)
Translates to: SQDMMLSRVSMWIPGLALSVNFF*KDGAEV
Trigger: AACTTCAGCACCATCCTTCCAGAAGAAATTCACACT...GAGAGCCAACCCAGGGATCCACATGCTCACCCTGGAGAGCATCATGTCCTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp ATGATGTTGGCTCAGGTGATGGAACCCAAAATCCACCAGTCAGAAGCATCTTCTGGAGGGAAGACAAGATaGAGGCACCTATCCAGGCAC +
Preference number: 2 (lower is better)
Translates to: MMLAQVMEPKIHQSEASSGGKTR*RHLSRH
Trigger: GTGCCTGGATAGGTGCCTCCATCTTGTCTTCCCTCC...AGAAGATGCTTCTGACTGGTGGATTTTGGGTTCCATCACCTGAGCCAACATCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR CAA 90 bp TCACCAGCACCTAATTTAGAGATGTTCCCTGTCACAGTAACCACCTaGTGCTCCCTGCTGTCAGATCCCACAGTGCATCACTTCACTGTA +
Preference number: 2 (lower is better)
Translates to: SPAPNLEMFPVTVTT*CSLLSDPTVHHFTV
Trigger: TACAGTGAAGTGATGCACTGTGGGATCTGACAGCAGGGAGCACAAGGTGGTTACTGTGACAGGGAACATCTCTAAATTAGGTGCTGGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR-3UTR TCA 90 bp GAGAGGCAGTTACCTTCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTAAGGATAGCCATTCATaGCAGGCACGAAGTAGGTCA +
Preference number: 2 (lower is better)
Translates to: ERQLPSHRSLERPPLPSLKDSHS*QARSRS
Trigger: TGACCTACTTCGTGCCTGTCATGAATGGCTATCCTT...AAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAACTGCCTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR-3UTR GCA 90 bp AGTCTGGAGAGACCACCTTTGCCATCTCTTTCTGCATCCGGAATCGTAGGCCAGCATGTTGTAGTCCAGTaGCACATAGCTGTATTTGTC +
Preference number: 2 (lower is better)
Translates to: SLERPPLPSLSASGIVGQHVVVQ*HIAVFV
Trigger: GACAAATACAGCTATGTGGCACTGGACTACAACATG...CTGGCCTACGATTCCGGATGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR GCA 90 bp CCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATCCACCAGTCAGAATCTCTAGCTGGCTCTaGTGTGAAGTGGCTGTTCTA +
Preference number: 2 (lower is better)
Translates to: PRHDDVGSGDGTQNPPVRISSWL*CEVAVL
Trigger: TAGAACAGCCACTTCACAGCAGAGCCAGCTAGAGAT...TCTGACTGGTGGATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp AGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCACTCGAGGTCAGCTATaGTCTCTAACACATTCCCAT +
Preference number: 2 (lower is better)
Translates to: RPCSELVLIMPCSVWLRPTRGQL*SLTHSH
Trigger: ATGGGAATGTGTTAGAGACCATAGCTGACCTCGAGT...GGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR TCA 90 bp TTGGCATATGGAGAGGCAGTTACCTTCACACAGAAGTCTGGAGAGACCACCTTTTGCCATCTGGCAGTGTaGATTTCTTCTGGAAGGATG +
Preference number: 2 (lower is better)
Translates to: LAYGEAVTFTQKSGETTFCHLAV*ISSGRM
Trigger: CATCCTTCCAGAAGAAATTCACACTGCCAGATGGCA...AAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAACTGCCTCTCCATATGCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR GCA 90 bp GCTGCTTTGTTCATTTATTGTTCAGTTCAGGAGTACCTTCAATCAGACGGCACAGCTGGCTTCGGAGTCTaGCTCAGAAGGTCCAGTAGT +
Preference number: 2 (lower is better)
Translates to: AALFIYCSVQEYLQSDGTAGFGV*LRRSSS
Trigger: ACTACTGGACCTTCTGAGGCAGACTCCGAAGCCAGC...TGTGCCGTCTGATTGAAGGTACTCCTGAACTGAACAATAAATGAACAAAGCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR-3UTR CCA 90 bp GTAGTCCAGTGCCACATAGCTGTATTTGTCTTTCAGGTCTCGGATGTACTCGAGAGGTGTCTTGAGGGATaGTCAGACCCATGTGTTACT +
Preference number: 2 (lower is better)
Translates to: VVQCHIAVFVFQVSDVLERCLEG*SDPCVT
Trigger: AGTAACACATGGGTCTGACCATCCCTCAAGACACCT...CTCGAGTACATCCGAGACCTGAAAGACAAATACAGCTATGTGGCACTGGACTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134455.3
3UTR-3UTR CCA 90 bp CCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATCCACCAGTCAGAACTCGAGGTCAGCTATaGTCTCTAACACATTCCCAT +
Preference number: 2 (lower is better)
Translates to: PRHDDVGSGDGTQNPPVRTRGQL*SLTHSH
Trigger: ATGGGAATGTGTTAGAGACCATAGCTGACCTCGAGT...TCTGACTGGTGGATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR TCA 90 bp ATGATGTTGGCTCAGGTGATGGAACCCAAAATCCACCAGTCAGAAGCATCTTCTTGCCATCTGGCAGTGTaGATTTCTTCTGGAAGGATG +
Preference number: 2 (lower is better)
Translates to: MMLAQVMEPKIHQSEASSCHLAV*ISSGRM
Trigger: CATCCTTCCAGAAGAAATTCACACTGCCAGATGGCA...AGAAGATGCTTCTGACTGGTGGATTTTGGGTTCCATCACCTGAGCCAACATCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp CTATACTTGGCATATGGAGAGGCAGTTACCTTCACACAGAAGTCTGGAGAGACCCTATGTCCAGCTTGGTaGTTGACAAGTGCAAAGGAT +
Preference number: 2 (lower is better)
Translates to: LYLAYGEAVTFTQKSGETLCPAW*LTSAKD
Trigger: ATCCTTTGCACTTGTCAACCACCAAGCTGGACATAG...GGTCTCTCCAGACTTCTGTGTGAAGGTAACTGCCTCTCCATATGCCAAGTATAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp GAAGCATCTTCTAAATATGACAGAAGGGCCAATTTCCAAATACTCATGGTTTGTGATTGGCATGCTGGCTaGCCAGGTGGCACACACTGC +
Preference number: 2 (lower is better)
Translates to: EASSKYDRRANFQILMVCDWHAG*PGGTHC
Trigger: GCAGTGTGTGCCACCTGGCCAGCCAGCATGCCAATC...ACAAACCATGAGTATTTGGAAATTGGCCCTTCTGTCATATTTAGAAGATGCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp CATCTCCATGTTGTAGTCCAGTGCCACATAGCTGTATTTGTCTTTCAGGTCTCGCTATGTCCAGCTTGGTaGTTGACAAGTGCAAAGGAT +
Preference number: 2 (lower is better)
Translates to: HLHVVVQCHIAVFVFQVSLCPAW*LTSAKD
Trigger: ATCCTTTGCACTTGTCAACCACCAAGCTGGACATAG...CGAGACCTGAAAGACAAATACAGCTATGTGGCACTGGACTACAACATGGAGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208153.2
ENSMUST00000208457.2
ENSMUST00000208625.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp GGCAGTTACCTTCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTTCTGAGTGTGAATTTCTTCTaGAAGGATGGTGCTGAAGTT +
Preference number: 2 (lower is better)
Translates to: GSYLHTEVWRDHLCHLFLSVNFF*KDGAEV
Trigger: AACTTCAGCACCATCCTTCCAGAAGAAATTCACACT...CAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAACTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp ATGTTGGCTCAGGTGATGGAACCCAAAATCCACCAGTCAGAAGCATCTTCTAAACTTCACACAGAAGTCTaGAGAGACCACCTTTGCCAT +
Preference number: 2 (lower is better)
Translates to: MLAQVMEPKIHQSEASSKLHTEV*RDHLCH
Trigger: ATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAG...TTTAGAAGATGCTTCTGACTGGTGGATTTTGGGTTCCATCACCTGAGCCAACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR TCA 90 bp AGGCAGTTACCTTCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTTCTGTTTCGAATAGGATCTaGGTCATTCTGGATTTAGCT +
Preference number: 2 (lower is better)
Translates to: RQLPSHRSLERPPLPSLSVSNRI*VILDLA
Trigger: AGCTAAATCCAGAATGACTCAGATCCTATTCGAAAC...AGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAACTGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134455.3
ENSMUST00000207642.2
3UTR-3UTR GCA 90 bp ATGTTGGCTCAGGTGATGGAACCCAAAATCCACCAGTCAGAAGCATCTTCTAAACACATGAAAGCCTCTTaGCCTAGGTTGATTTCCTTG +
Preference number: 2 (lower is better)
Translates to: MLAQVMEPKIHQSEASSKHMKAS*PRLISL
Trigger: CAAGGAAATCAACCTAGGGCAAGAGGCTTTCATGTG...TTTAGAAGATGCTTCTGACTGGTGGATTTTGGGTTCCATCACCTGAGCCAACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp ATTTCCTTGCCATCTGGCAGTGTGAATTTCTTCTGGAAGGATGGTGCTGAAGTTCTATGTCCAGCTTGGTaGTTGACAAGTGCAAAGGAT +
Preference number: 2 (lower is better)
Translates to: ISLPSGSVNFFWKDGAEVLCPAW*LTSAKD
Trigger: ATCCTTTGCACTTGTCAACCACCAAGCTGGACATAG...AACTTCAGCACCATCCTTCCAGAAGAAATTCACACTGCCAGATGGCAAGGAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208153.2
ENSMUST00000208457.2
ENSMUST00000208625.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp TCCTTGCCATCTGGCAGTGTGAATTTCTTCTGGAAGGATGGTGCTGAAGTTTTTACTCGAGGTCAGCTATaGTCTCTAACACATTCCCAT +
Preference number: 2 (lower is better)
Translates to: SLPSGSVNFFWKDGAEVFTRGQL*SLTHSH
Trigger: ATGGGAATGTGTTAGAGACCATAGCTGACCTCGAGT...AAAAACTTCAGCACCATCCTTCCAGAAGAAATTCACACTGCCAGATGGCAAGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208153.2
ENSMUST00000208457.2
ENSMUST00000208625.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp CAGTTACCTTCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTTCTGCAAGTGTGAATTTCTTCTaGAAGGATGGTGCTGAAGTT +
Preference number: 2 (lower is better)
Translates to: QLPSHRSLERPPLPSLSASVNFF*KDGAEV
Trigger: AACTTCAGCACCATCCTTCCAGAAGAAATTCACACT...TGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CCA 90 bp AAGCATCTTCTAAATATGACAGAAGGGCCAATTTCCAAATACTCATGGTTTGTGGGAGGGAAGACAAGATaGAGGCACCTATCCAGGCAC +
Preference number: 2 (lower is better)
Translates to: KHLLNMTEGPISKYSWFVGGKTR*RHLSRH
Trigger: GTGCCTGGATAGGTGCCTCCATCTTGTCTTCCCTCC...CACAAACCATGAGTATTTGGAAATTGGCCCTTCTGTCATATTTAGAAGATGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR TCA 90 bp CATAGCTGTATTTGTCTTTCAGGTCTCGGATGTACTCGAGGTCAGCTATGGTCTGTTTCGAATAGGATCTaGGTCATTCTGGATTTAGCT +
Preference number: 2 (lower is better)
Translates to: HSCICLSGLGCTRGQLWSVSNRI*VILDLA
Trigger: AGCTAAATCCAGAATGACTCAGATCCTATTCGAAAC...AGACCATAGCTGACCTCGAGTACATCCGAGACCTGAAAGACAAATACAGCTATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134455.3
ENSMUST00000207642.2
3UTR-3UTR TCA 90 bp CAAATACTCATGGTTTGTGATCCACATGTCCTTGAACAGAGGGAGGGAAGACAACTGACAACAGTTTCATaGGGTATAGAGTCAGGTCTT +
Preference number: 2 (lower is better)
Translates to: QILMVCDPHVLEQREGRQLTTVS*GIESGL
Trigger: AAGACCTGACTCTATACCTCATGAAACTGTTGTCAG...TTGTCTTCCCTCCCTCTGTTCAAGGACATGTGGATCACAAACCATGAGTATTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR TCA 90 bp ACATCTCCATGTTGTAGTCCAGTGCCACATAGCTGTATTTGTCTTTCAGGTCTCCTGACAACAGTTTCATaGGGTATAGAGTCAGGTCTT +
Preference number: 2 (lower is better)
Translates to: TSPCCSPVPHSCICLSGLLTTVS*GIESGL
Trigger: AAGACCTGACTCTATACCTCATGAAACTGTTGTCAG...GAGACCTGAAAGACAAATACAGCTATGTGGCACTGGACTACAACATGGAGATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208153.2
ENSMUST00000208457.2
ENSMUST00000208625.2
ENSMUST00000208761.2
3UTR-3UTR TCA 90 bp ATCCACCAGTCAGAAGCATCTTCTAAATATGACAGAAGGGCCAATTTCCAAATACTATACTGGAAAGAATaGCTTTGTCCTTGTCCGGCC +
Preference number: 2 (lower is better)
Translates to: IHQSEASSKYDRRANFQILYWKE*LCPCPA
Trigger: GGCCGGACAAGGACAAAGTCATTCTTTCCAGTATAG...TATTTGGAAATTGGCCCTTCTGTCATATTTAGAAGATGCTTCTGACTGGTGGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207642.2
3UTR-3UTR GCA 90 bp AAGCATCTTCTAAATATGACAGAAGGGCCAATTTCCAAATACTCATGGTTTGTGCATGTTGTAGTCCAGTaGCACATAGCTGTATTTGTC +
Preference number: 2 (lower is better)
Translates to: KHLLNMTEGPISKYSWFVHVVVQ*HIAVFV
Trigger: GACAAATACAGCTATGTGGCACTGGACTACAACATG...CACAAACCATGAGTATTTGGAAATTGGCCCTTCTGTCATATTTAGAAGATGCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR GCA 72 bp GCATGCTGGCTGGCCAGGTGGCACACACTGCCCCCGTaGTCAGGAGTACATCTTGCAGCAGGCTGTGGATTC +
Preference number: 3 (lower is better)
Translates to: ACWLARWHTLPP*SGVHLAAGCGF
Trigger: GAATCCACAGCCTGCTGCAAGATGTACTCCTGAGCACGGGGGCAGTGTGTGCCACCTGGCCAGCCAGCATGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR CCA 72 bp CGAATAGGATCTGGGGAGGAAGATTGGCATGCTGGCTaGCCAGGTGGCACACACTGCCCCCGTGCTCAGGAG +
Preference number: 3 (lower is better)
Translates to: RIGSGEEDWHAG*PGGTHCPRAQE
Trigger: CTCCTGAGCACGGGGGCAGTGTGTGCCACCTGGCCAGCCAGCATGCCAATCTTCCTCCCCAGATCCTATTCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR GCA 72 bp GAAGATTGGCATGCTGGCTGGCCAGGTGGCACACACTaGCCCCGTGCTCAGGAGTACATCTTGCAGCAGGCT +
Preference number: 3 (lower is better)
Translates to: EDWHAGWPGGTH*PRAQEYILQQA
Trigger: AGCCTGCTGCAAGATGTACTCCTGAGCACGGGGGCAGTGTGTGCCACCTGGCCAGCCAGCATGCCAATCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR GCA 72 bp AGCCTGGGGTGGGCAGCGGCCATCTCTAGCTGGCTCTaGTGTGAAGTGGCTGTTCTAGCTTCATTCTGTGGC +
Preference number: 3 (lower is better)
Translates to: SLGWAAAISSWL*CEVAVLASFCG
Trigger: GCCACAGAATGAAGCTAGAACAGCCACTTCACAGCAGAGCCAGCTAGAGATGGCCGCTGCCCACCCCAGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR CCA 72 bp GGACATGATGCTCTCCAGGGTGAGCATGTGGATCCCTaGGTTGGCTCTCTCCAGGAGGCTGGTGTCGAAGAG +
Preference number: 3 (lower is better)
Translates to: GHDALQGEHVDP*VGSLQEAGVEE
Trigger: CTCTTCGACACCAGCCTCCTGGAGAGAGCCAACCCAGGGATCCACATGCTCACCCTGGAGAGCATCATGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR CCA 72 bp ATCTGGGGAGGAAGATTGGCATGCTGGCTGGCCAGGTaGCACACACTGCCCCCGTGCTCAGGAGTACATCTT +
Preference number: 3 (lower is better)
Translates to: IWGGRLACWLAR*HTLPPCSGVHL
Trigger: AAGATGTACTCCTGAGCACGGGGGCAGTGTGTGCCACCTGGCCAGCCAGCATGCCAATCTTCCTCCCCAGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR CCA 72 bp GTTTCGAATAGGATCTGGGGAGGAAGATTGGCATGCTaGCTGGCCAGGTGGCACACACTGCCCCCGTGCTCA +
Preference number: 3 (lower is better)
Translates to: VSNRIWGGRLAC*LARWHTLPPCS
Trigger: TGAGCACGGGGGCAGTGTGTGCCACCTGGCCAGCCAGCATGCCAATCTTCCTCCCCAGATCCTATTCGAAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR CCA 72 bp CAGTCTTGTTCTCCCAACCCCTCTAGCACATTCTGGTaGCCTGTCCCTGGGTGGCCTGTGGGCCAGGACTAT +
Preference number: 3 (lower is better)
Translates to: QSCSPNPSSTFW*PVPGWPVGQDY
Trigger: ATAGTCCTGGCCCACAGGCCACCCAGGGACAGGCCACCAGAATGTGCTAGAGGGGTTGGGAGAACAAGACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208625.2
3UTR-3UTR CAA 90 bp GTCTCCGACGGCATCACCTACTGTCGAGGAGCTGCAGTGGTGCCAAGCCTCTACAGAATGACTTTGTCCTaGTCCGGCCTCTCTGTTCCC +
Preference number: 3 (lower is better)
Translates to: VSDGITYCRGAAVVPSLYRMTLS*SGLSVP
Trigger: GGGAACAGAGAGGCCGGACAAGGACAAAGTCATTCT...GTAGAGGCTTGGCACCACTGCAGCTCCTCGACAGTAGGTGATGCCGTCGGAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208625.2
3UTR GCA 72 bp AGTAGTCTCCGACGGCATCACCTACTGTCGAGGAGCTaGAGTGGTGCCAAGCCTCTACCTGGGCTTCATGAC +
Preference number: 3 (lower is better)
Translates to: SSLRRHHLLSRS*SGAKPLPGLHD
Trigger: GTCATGAAGCCCAGGTAGAGGCTTGGCACCACTGCAGCTCCTCGACAGTAGGTGATGCCGTCGGAGACTACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR CCA 72 bp TTCTCACAGGACATGATGCTCTCCAGGGTGAGCATGTaGATCCCTGGGTTGGCTCTCTCCAGGAGGCTGGTG +
Preference number: 3 (lower is better)
Translates to: FSQDMMLSRVSM*IPGLALSRRLV
Trigger: CACCAGCCTCCTGGAGAGAGCCAACCCAGGGATCCACATGCTCACCCTGGAGAGCATCATGTCCTGTGAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CAA 90 bp AGGGTGAGCATGTGGATCCCTGGGTTGGCTCTCTCCAGGAGGCTGGTGTCGAAGCTGGAAAGAATGACTTaGTCCTTGTCCGGCCTCTCT +
Preference number: 3 (lower is better)
Translates to: RVSMWIPGLALSRRLVSKLERMT*SLSGLS
Trigger: AGAGAGGCCGGACAAGGACAAAGTCATTCTTTCCAG...CTTCGACACCAGCCTCCTGGAGAGAGCCAACCCAGGGATCCACATGCTCACCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207642.2
3UTR GCA 72 bp ATTCTCCAAGTCGTCAGACTGGCTGGCTTCGGAGTCTaGCTCAGAAGGTCCAGTAGTCTCCGACGGCATCAC +
Preference number: 3 (lower is better)
Translates to: ILQVVRLAGFGV*LRRSSSLRRHH
Trigger: GTGATGCCGTCGGAGACTACTGGACCTTCTGAGGCAGACTCCGAAGCCAGCCAGTCTGACGACTTGGAGAAT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR CCA 72 bp TACAGGGCGGGGAAGTTGAAGGTTTCGAATAGGATCTaGGGAGGAAGATTGGCATGCTGGCTGGCCAGGTGG +
Preference number: 3 (lower is better)
Translates to: YRAGKLKVSNRI*GGRLACWLARW
Trigger: CCACCTGGCCAGCCAGCATGCCAATCTTCCTCCCCAGATCCTATTCGAAACCTTCAACTTCCCCGCCCTGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR CCA 72 bp AACCCCTCTAGCACATTCTGGTGGCCTGTCCCTGGGTaGCCTGTGGGCCAGGACTATACTGGAAAGAATGAC +
Preference number: 3 (lower is better)
Translates to: NPSSTFWWPVPG*PVGQDYTGKND
Trigger: GTCATTCTTTCCAGTATAGTCCTGGCCCACAGGCCACCCAGGGACAGGCCACCAGAATGTGCTAGAGGGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208625.2
3UTR-3UTR CAA 90 bp TCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCATCTGGGGAGGAAGATaGGCATGCTGGCTGGCCAGG +
Preference number: 3 (lower is better)
Translates to: SELVLIMPCSVWLRPSLGIWGGR*ACWLAR
Trigger: CCTGGCCAGCCAGCATGCCAATCTTCCTCCCCAGAT...GCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR TCA 72 bp GCAGGACTGGAACTGCTGTCTCCTGACTTGGATCCCTaGGGCCGTGACTATGGAGGTACTGAAGAGCAGCAA +
Preference number: 3 (lower is better)
Translates to: AGLELLSPDLDP*GRDYGGTEEQQ
Trigger: TTGCTGCTCTTCAGTACCTCCATAGTCACGGCCTCAGGGATCCAAGTCAGGAGACAGCAGTTCCAGTCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134455.3
3UTR TCA 72 bp GAGCTGCAGTGGTGCCAAGCCTCTACCTGGGCTTCATaGCACAGCACTGGGGCCTTAGACAGACTCAGTTAT +
Preference number: 3 (lower is better)
Translates to: ELQWCQASTWAS*HSTGALDRLSY
Trigger: ATAACTGAGTCTGTCTAAGGCCCCAGTGCTGTGTCATGAAGCCCAGGTAGAGGCTTGGCACCACTGCAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR TCA 72 bp TGGGTGGCCTGTGGGCCAGGACTATACTGGAAAGAATaGCTTTGTCCTTGTCCGGCCTCTCTGTTCCCTCCA +
Preference number: 3 (lower is better)
Translates to: WVACGPGLYWKE*LCPCPASLFPP
Trigger: TGGAGGGAACAGAGAGGCCGGACAAGGACAAAGTCATTCTTTCCAGTATAGTCCTGGCCCACAGGCCACCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207642.2
ENSMUST00000208625.2
3UTR CCA 72 bp CTAGCACATTCTGGTGGCCTGTCCCTGGGTGGCCTGTaGGCCAGGACTATACTGGAAAGAATGACTTTGTCC +
Preference number: 3 (lower is better)
Translates to: LAHSGGLSLGGL*ARTILERMTLS
Trigger: GGACAAAGTCATTCTTTCCAGTATAGTCCTGGCCCACAGGCCACCCAGGGACAGGCCACCAGAATGTGCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208625.2
3UTR-3UTR CAA 90 bp CCTTCAGGAGAAAGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAATGTGGATCCCTGGGTaGGCTCTCTCCAGGAGGCTG +
Preference number: 3 (lower is better)
Translates to: PSGERRPCSELVLIMPCSMWIPG*ALSRRL
Trigger: CAGCCTCCTGGAGAGAGCCAACCCAGGGATCCACAT...TGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCTTTCTCCTGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CAA 90 bp CCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATCCACCAGTCAGAATGTGGATCCCTGGGTaGGCTCTCTCCAGGAGGCTG +
Preference number: 3 (lower is better)
Translates to: PRHDDVGSGDGTQNPPVRMWIPG*ALSRRL
Trigger: CAGCCTCCTGGAGAGAGCCAACCCAGGGATCCACAT...TCTGACTGGTGGATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR TCA 72 bp GAGGTTCTGCCAGAAGCGATAAGGGAGAGGACGGCTTaGTTAGCTGTGTACAGGGCGGGGAAGTTGAAGGTT +
Preference number: 3 (lower is better)
Translates to: EVLPEAIRERTA*LAVYRAGKLKV
Trigger: AACCTTCAACTTCCCCGCCCTGTACACAGCTAATCAAGCCGTCCTCTCCCTTATCGCTTCTGGCAGAACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000134455.3
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR GCA 72 bp CAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTTCTaGATCCGGAATCGTAGGCCAGTACAGGCACTGGTG +
Preference number: 3 (lower is better)
Translates to: QKSGETTFAISF*IRNRRPVQALV
Trigger: CACCAGTGCCTGTACTGGCCTACGATTCCGGATGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR CCA 72 bp GTGCCAAGCCTCTACCTGGGCTTCATGACACAGCACTaGGGCCTTAGACAGACTCAGTTATGCACTGAGTCA +
Preference number: 3 (lower is better)
Translates to: VPSLYLGFMTQH*GLRQTQLCTES
Trigger: TGACTCAGTGCATAACTGAGTCTGTCTAAGGCCCCAGTGCTGTGTCATGAAGCCCAGGTAGAGGCTTGGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR CCA 72 bp GTAGAAGGAGTAATGCCAAATCTGGTGGCCTGTCCCTaGGTGGCCTGTGGGCCAGGACTATACTGGAAAGAA +
Preference number: 3 (lower is better)
Translates to: VEGVMPNLVACP*VACGPGLYWKE
Trigger: TTCTTTCCAGTATAGTCCTGGCCCACAGGCCACCCAGGGACAGGCCACCAGATTTGGCATTACTCCTTCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207642.2
3UTR-3UTR CAA 90 bp AGGCACGAAGTAGGTCATCCCATCTCCAGATTCAATAGCTGTTCCAGAGGTTCTATCTGGGGAGGAAGATaGGCATGCTGGCTGGCCAGG +
Preference number: 3 (lower is better)
Translates to: RHEVGHPISRFNSCSRGSIWGGR*ACWLAR
Trigger: CCTGGCCAGCCAGCATGCCAATCTTCCTCCCCAGAT...AGAACCTCTGGAACAGCTATTGAATCTGGAGATGGGATGACCTACTTCGTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR TCA 72 bp AGACAGAATGGTGGCCACCATCTCTTCACACATGTCTaGTTCTCCAAGTCGTCAGACTGGCTGGCTTCGGAG +
Preference number: 3 (lower is better)
Translates to: RQNGGHHLFTHV*FSKSSDWLASE
Trigger: CTCCGAAGCCAGCCAGTCTGACGACTTGGAGAATCAGACATGTGTGAAGAGATGGTGGCCACCATTCTGTCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR GCA 72 bp GTGTCGAAGAGCACCTCTGAGCACATGAAAGCCTCTTaGCCTAGGTTGATTTCCTTGCCATCTGGCAGTGTG +
Preference number: 3 (lower is better)
Translates to: VSKSTSEHMKAS*PRLISLPSGSV
Trigger: CACACTGCCAGATGGCAAGGAAATCAACCTAGGGCAAGAGGCTTTCATGTGCTCAGAGGTGCTCTTCGACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208153.2
ENSMUST00000208457.2
ENSMUST00000208625.2
ENSMUST00000208761.2
3UTR GCA 72 bp AGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTaGTCAGTATGGCTAAGGCCCAGCCTAGGCATGATG +
Preference number: 3 (lower is better)
Translates to: RRPCSELVLIMP*SVWLRPSLGMM
Trigger: CATCATGCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000152910.3
ENSMUST00000207482.2
ENSMUST00000207630.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CAA 90 bp GCATGTGGATCCCTGGGTTGGCTCTCTCCAGGAGGCTGGTGTCGAAGAGCACCTTCTAACACATTCCCATaGTCTGACAACAGTTTCATG +
Preference number: 3 (lower is better)
Translates to: ACGSLGWLSPGGWCRRAPSNTFP*SDNSFM
Trigger: CATGAAACTGTTGTCAGACAATGGGAATGTGTTAGA...AGGTGCTCTTCGACACCAGCCTCCTGGAGAGAGCCAACCCAGGGATCCACATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CAA 90 bp CAGGGTGAGCATGTGGATCCCTGGGTTGGCTCTCTCCAGGAGGCTGGTGTCGAATCTAACACATTCCCATaGTCTGACAACAGTTTCATG +
Preference number: 3 (lower is better)
Translates to: QGEHVDPWVGSLQEAGVESNTFP*SDNSFM
Trigger: CATGAAACTGTTGTCAGACAATGGGAATGTGTTAGA...TTCGACACCAGCCTCCTGGAGAGAGCCAACCCAGGGATCCACATGCTCACCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CAA 90 bp AAGTTGAAGGTTTCGAATAGGATCTGGGGAGGAAGATTGGCATGCTGGCTGGCCGCTCAGGAGTACATCTaGCAGCAGGCTGTGGATTCA +
Preference number: 3 (lower is better)
Translates to: KLKVSNRIWGGRLACWLAAQEYI*QQAVDS
Trigger: TGAATCCACAGCCTGCTGCAAGATGTACTCCTGAGC...GGCCAGCCAGCATGCCAATCTTCCTCCCCAGATCCTATTCGAAACCTTCAACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR-3UTR CAA 90 bp TCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTTCTGCATCCGGAATCCTGTTCAGGGGCAATTaGGAGGGAGTGGTAGAAGGA +
Preference number: 3 (lower is better)
Translates to: SHRSLERPPLPSLSASGILFRGN*EGVVEG
Trigger: TCCTTCTACCACTCCCTCCAAATTGCCCCTGAACAG...GATTCCGGATGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000134455.3
ENSMUST00000207642.2
3UTR CCA 72 bp GGCATATGGAGAGGCAGTTACCTTCACACAGAAGTCTaGAGAGACCACCTTTGCCATCTCTTTCTGCATCCG +
Preference number: 3 (lower is better)
Translates to: GIWRGSYLHTEV*RDHLCHLFLHP
Trigger: CGGATGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAACTGCCTCTCCATATGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR CCA 72 bp CACTGTAAGAGTCTCAGGGACCTTCACACAGAAGTCTaGAGAGACCACCTTTGCCATCTCTTTCTGCATCCG +
Preference number: 3 (lower is better)
Translates to: HCKSLRDLHTEV*RDHLCHLFLHP
Trigger: CGGATGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTCCCTGAGACTCTTACAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207235.2
3UTR-3UTR CAA 90 bp CTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCATGATGTACAGGGCGGGGAAGTaGAAGGTTTCGAATAGGATC +
Preference number: 3 (lower is better)
Translates to: LVLIMPCSVWLRPSLGMMYRAGK*KVSNRI
Trigger: GATCCTATTCGAAACCTTCAACTTCCCCGCCCTGTA...CATCATGCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000134455.3
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR-3UTR CAA 90 bp AGGCAGTTACCTTCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTTCTGCTCAGGAGTACATCTaGCAGCAGGCTGTGGATTCA +
Preference number: 3 (lower is better)
Translates to: RQLPSHRSLERPPLPSLSAQEYI*QQAVDS
Trigger: TGAATCCACAGCCTGCTGCAAGATGTACTCCTGAGC...AGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAACTGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR GCA 72 bp GAGGGAGTGGTAGAAGGAGTAATGCCAAATCTCAAGTaGAGGTGTCTTGAGGGATGGTCAGACCCATGTGTT +
Preference number: 3 (lower is better)
Translates to: EGVVEGVMPNLK*RCLEGWSDPCV
Trigger: AACACATGGGTCTGACCATCCCTCAAGACACCTGCACTTGAGATTTGGCATTACTCCTTCTACCACTCCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134455.3
3UTR CCA 72 bp TGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATaGCTAAGGCCCAGCCTAGGCATGATGATGTTGGCT +
Preference number: 3 (lower is better)
Translates to: CSELVLIMPCSV*LRPSLGMMMLA
Trigger: AGCCAACATCATCATGCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000152910.3
ENSMUST00000207482.2
ENSMUST00000207630.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CAA 90 bp CATAGCTGTATTTGTCTTTCAGGTCTCGGATGTACTCGAGGTCAGCTATGGTCTCTGTTCAGGGGCAATTaGGAGGGAGTGGTAGAAGGA +
Preference number: 3 (lower is better)
Translates to: HSCICLSGLGCTRGQLWSLFRGN*EGVVEG
Trigger: TCCTTCTACCACTCCCTCCAAATTGCCCCTGAACAG...AGACCATAGCTGACCTCGAGTACATCCGAGACCTGAAAGACAAATACAGCTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000134455.3
ENSMUST00000207642.2
3UTR-3UTR CAA 90 bp CAGTTACCTTCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTTCTGCATACAGGGCGGGGAAGTaGAAGGTTTCGAATAGGATC +
Preference number: 3 (lower is better)
Translates to: QLPSHRSLERPPLPSLSAYRAGK*KVSNRI
Trigger: GATCCTATTCGAAACCTTCAACTTCCCCGCCCTGTA...TGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000134455.3
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR TCA 72 bp GCTTGGTGGTTGACAAGTGCAAAGGATAGCCATTCATaGCAGGCACGAAGTAGGTCATCCCATCTCCAGATT +
Preference number: 3 (lower is better)
Translates to: AWWLTSAKDSHS*QARSRSSHLQI
Trigger: AATCTGGAGATGGGATGACCTACTTCGTGCCTGTCATGAATGGCTATCCTTTGCACTTGTCAACCACCAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208625.2
ENSMUST00000208761.2
3UTR GCA 72 bp AATTTAGAGATGTTCCCTGTCACAGTAACCACCTTGTaGTCCCTGCTGTCAGATCCCACAGTGCATCACTTC +
Preference number: 3 (lower is better)
Translates to: NLEMFPVTVTTL*SLLSDPTVHHF
Trigger: GAAGTGATGCACTGTGGGATCTGACAGCAGGGAGCACAAGGTGGTTACTGTGACAGGGAACATCTCTAAATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR CCA 72 bp AGGAGTACCTTCAATCAGACGGCACAGACAGAATGGTaGCCACCATCTCTTCACACATGTCTGATTCTCCAA +
Preference number: 3 (lower is better)
Translates to: RSTFNQTAQTEW*PPSLHTCLILQ
Trigger: TTGGAGAATCAGACATGTGTGAAGAGATGGTGGCCACCATTCTGTCTGTGCCGTCTGATTGAAGGTACTCCT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR CCA 72 bp TTCAGGAGTACCTTCAATCAGACGGCACAGACAGAATaGTGGCCACCATCTCTTCACACATGTCTGATTCTC +
Preference number: 3 (lower is better)
Translates to: FRSTFNQTAQTE*WPPSLHTCLIL
Trigger: GAGAATCAGACATGTGTGAAGAGATGGTGGCCACCATTCTGTCTGTGCCGTCTGATTGAAGGTACTCCTGAA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR-3UTR CAA 90 bp ACATGTCTGATTCTCCAAGTCGTCAGACTGGCTGGCTTCGGAGTCTGCCTCAGAATGGTGCTGAAGTTTTaGACATCTCCATGTTGTAGT +
Preference number: 3 (lower is better)
Translates to: TCLILQVVRLAGFGVCLRMVLKF*TSPCCS
Trigger: ACTACAACATGGAGATGTCAAAAACTTCAGCACCAT...TCTGAGGCAGACTCCGAAGCCAGCCAGTCTGACGACTTGGAGAATCAGACATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
3UTR-3UTR CAA 90 bp CTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATCCACCAGTCAGAACCTAGGTTGATTTCCTaGCCATCTGGCAGTGTGAAT +
Preference number: 3 (lower is better)
Translates to: LGMMMLAQVMEPKIHQSEPRLIS*PSGSVN
Trigger: ATTCACACTGCCAGATGGCAAGGAAATCAACCTAGG...TTCTGACTGGTGGATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CAA 90 bp CAAATACTCATGGTTTGTGATCCACATGTCCTTGAACAGAGGGAGGGAAGACAACTGGAGAGACCACCTTaGCCATCTCTTTCTGCATCC +
Preference number: 3 (lower is better)
Translates to: QILMVCDPHVLEQREGRQLERPP*PSLSAS
Trigger: GGATGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAG...TTGTCTTCCCTCCCTCTGTTCAAGGACATGTGGATCACAAACCATGAGTATTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CAA 90 bp ACATCTCCATGTTGTAGTCCAGTGCCACATAGCTGTATTTGTCTTTCAGGTCTCAGAATGACTTTGTCCTaGTCCGGCCTCTCTGTTCCC +
Preference number: 3 (lower is better)
Translates to: TSPCCSPVPHSCICLSGLRMTLS*SGLSVP
Trigger: GGGAACAGAGAGGCCGGACAAGGACAAAGTCATTCT...GAGACCTGAAAGACAAATACAGCTATGTGGCACTGGACTACAACATGGAGATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207642.2
ENSMUST00000208625.2
3UTR-3UTR CAA 90 bp TCTTCTAAATATGACAGAAGGGCCAATTTCCAAATACTCATGGTTTGTGATCCAATGTGGATCCCTGGGTaGGCTCTCTCCAGGAGGCTG +
Preference number: 3 (lower is better)
Translates to: SSKYDRRANFQILMVCDPMWIPG*ALSRRL
Trigger: CAGCCTCCTGGAGAGAGCCAACCCAGGGATCCACAT...TGGATCACAAACCATGAGTATTTGGAAATTGGCCCTTCTGTCATATTTAGAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CAA 90 bp CCATCTGGCAGTGTGAATTTCTTCTGGAAGGATGGTGCTGAAGTTTTTGACATCCTGGAAAGAATGACTTaGTCCTTGTCCGGCCTCTCT +
Preference number: 3 (lower is better)
Translates to: PSGSVNFFWKDGAEVFDILERMT*SLSGLS
Trigger: AGAGAGGCCGGACAAGGACAAAGTCATTCTTTCCAG...GATGTCAAAAACTTCAGCACCATCCTTCCAGAAGAAATTCACACTGCCAGATGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000207642.2
ENSMUST00000208625.2
3UTR TCA 72 bp TACAGGCACTGGTGCCACCAGTCAGTACGATATAATTaGATAGAGTCCTCTGGTGGGATTTCTCACAGGACA +
Preference number: 3 (lower is better)
Translates to: YRHWCHQSVRYN*IESSGGISHRT
Trigger: TGTCCTGTGAGAAATCCCACCAGAGGACTCTATTCAATTATATCGTACTGACTGGTGGCACCAGTGCCTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR CCA 72 bp AAGACAAGATGGAGGCACCTATCCAGGCACTATACTTaGCATATGGAGAGGCAGTTACCTTCACACAGAAGT +
Preference number: 3 (lower is better)
Translates to: KTRWRHLSRHYT*HMERQLPSHRS
Trigger: ACTTCTGTGTGAAGGTAACTGCCTCTCCATATGCCAAGTATAGTGCCTGGATAGGTGCCTCCATCTTGTCTT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CAA 90 bp GGCAGTTACCTTCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTTCTGTCTAACACATTCCCATaGTCTGACAACAGTTTCATG +
Preference number: 3 (lower is better)
Translates to: GSYLHTEVWRDHLCHLFLSNTFP*SDNSFM
Trigger: CATGAAACTGTTGTCAGACAATGGGAATGTGTTAGA...CAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAACTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR GCA 72 bp ACACACTTTTACTGTCCTTCAGGAGAAAGGAGGCCTTaGTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTA +
Preference number: 3 (lower is better)
Translates to: THFYCPSGERRP*SELVLIMPCSV
Trigger: TACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCTTTCTCCTGAAGGACAGTAAAAGTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000152910.3
ENSMUST00000207482.2
ENSMUST00000207630.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CAA 90 bp ATCCACCAGTCAGAAGCATCTTCTAAATATGACAGAAGGGCCAATTTCCAAATATCAAGTGCAGGTGTCTaGAGGGATGGTCAGACCCAT +
Preference number: 3 (lower is better)
Translates to: IHQSEASSKYDRRANFQISSAGV*RDGQTH
Trigger: ATGGGTCTGACCATCCCTCAAGACACCTGCACTTGA...TATTTGGAAATTGGCCCTTCTGTCATATTTAGAAGATGCTTCTGACTGGTGGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134455.3
3UTR-3UTR CAA 90 bp TCATGGTTTGTGATCCACATGTCCTTGAACAGAGGGAGGGAAGACAAGATGGAGATGGTGCTGAAGTTTTaGACATCTCCATGTTGTAGT +
Preference number: 3 (lower is better)
Translates to: SWFVIHMSLNRGREDKMEMVLKF*TSPCCS
Trigger: ACTACAACATGGAGATGTCAAAAACTTCAGCACCAT...CTCCATCTTGTCTTCCCTCCCTCTGTTCAAGGACATGTGGATCACAAACCATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR-3UTR CAA 90 bp ACCAGTCAGAAGCATCTTCTAAATATGACAGAAGGGCCAATTTCCAAATACTCACTGGAGAGACCACCTTaGCCATCTCTTTCTGCATCC +
Preference number: 3 (lower is better)
Translates to: TSQKHLLNMTEGPISKYSLERPP*PSLSAS
Trigger: GGATGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAG...TGAGTATTTGGAAATTGGCCCTTCTGTCATATTTAGAAGATGCTTCTGACTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR TCA 72 bp TCTCTAACACATTCCCATTGTCTGACAACAGTTTCATaGGGTATAGAGTCAGGTCTTGGCCAGCTATGTCCA +
Preference number: 3 (lower is better)
Translates to: SLTHSHCLTTVS*GIESGLGQLCP
Trigger: TGGACATAGCTGGCCAAGACCTGACTCTATACCTCATGAAACTGTTGTCAGACAATGGGAATGTGTTAGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208153.2
ENSMUST00000208457.2
ENSMUST00000208625.2
ENSMUST00000208761.2
3UTR-3UTR CAA 90 bp AAGCATCTTCTAAATATGACAGAAGGGCCAATTTCCAAATACTCATGGTTTGTGCTGGAGAGACCACCTTaGCCATCTCTTTCTGCATCC +
Preference number: 3 (lower is better)
Translates to: KHLLNMTEGPISKYSWFVLERPP*PSLSAS
Trigger: GGATGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAG...CACAAACCATGAGTATTTGGAAATTGGCCCTTCTGTCATATTTAGAAGATGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR CCA 72 bp TTGATTTCCTTGCCATCTGGCAGTGTGAATTTCTTCTaGAAGGATGGTGCTGAAGTTTTTGACATCTCCATG +
Preference number: 3 (lower is better)
Translates to: LISLPSGSVNFF*KDGAEVFDISM
Trigger: CATGGAGATGTCAAAAACTTCAGCACCATCCTTCCAGAAGAAATTCACACTGCCAGATGGCAAGGAAATCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208153.2
ENSMUST00000208457.2
ENSMUST00000208625.2
ENSMUST00000208761.2
3UTR-3UTR CAA 90 bp ACATCTCCATGTTGTAGTCCAGTGCCACATAGCTGTATTTGTCTTTCAGGTCTCTCTAACACATTCCCATaGTCTGACAACAGTTTCATG +
Preference number: 3 (lower is better)
Translates to: TSPCCSPVPHSCICLSGLSNTFP*SDNSFM
Trigger: CATGAAACTGTTGTCAGACAATGGGAATGTGTTAGA...GAGACCTGAAAGACAAATACAGCTATGTGGCACTGGACTACAACATGGAGATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208153.2
ENSMUST00000208457.2
ENSMUST00000208625.2
ENSMUST00000208761.2
3UTR-3UTR CAA 90 bp TTTTTGACATCTCCATGTTGTAGTCCAGTGCCACATAGCTGTATTTGTCTTTCAAGGGAGGAAAGGGTTTaGTTGGTGAATACTTGCTGG +
Preference number: 3 (lower is better)
Translates to: FLTSPCCSPVPHSCICLSREERV*LVNTCW
Trigger: CCAGCAAGTATTCACCAACAAAACCCTTTCCTCCCT...TGAAAGACAAATACAGCTATGTGGCACTGGACTACAACATGGAGATGTCAAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR-3UTR CAA 90 bp AAGCATCTTCTAAATATGACAGAAGGGCCAATTTCCAAATACTCATGGTTTGTGAGGGAGGAAAGGGTTTaGTTGGTGAATACTTGCTGG +
Preference number: 3 (lower is better)
Translates to: KHLLNMTEGPISKYSWFVREERV*LVNTCW
Trigger: CCAGCAAGTATTCACCAACAAAACCCTTTCCTCCCT...CACAAACCATGAGTATTTGGAAATTGGCCCTTCTGTCATATTTAGAAGATGCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR-3UTR CAA 90 bp AAGTTTTTGACATCTCCATGTTGTAGTCCAGTGCCACATAGCTGTATTTGTCTTGAGGAAAGGGTTTTGTaGGTGAATACTTGCTGGTCA +
Preference number: 3 (lower is better)
Translates to: KFLTSPCCSPVPHSCICLEERVL*VNTCWS
Trigger: TGACCAGCAAGTATTCACCAACAAAACCCTTTCCTC...AAGACAAATACAGCTATGTGGCACTGGACTACAACATGGAGATGTCAAAAACTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208761.2
3UTR CAA 72 bp GGTGGCACACACTGCCCCCGTGCTCAGGAGTACATCTaGCAGCAGGCTGTGGATTCAGGGAGACTAAGCCTG +
Preference number: 4 (lower is better)
Translates to: GGTHCPRAQEYI*QQAVDSGRLSL
Trigger: CAGGCTTAGTCTCCCTGAATCCACAGCCTGCTGCAAGATGTACTCCTGAGCACGGGGGCAGTGTGTGCCACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
CDS-3UTR CCA 90 bp GAAGGTCCAGTAGTCTCCGACGGCATCACCTACTGTCGAGGAGCTGCAGTGGTGTCATTTTCCCGAGGATaGTGGGGAAGACAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: EGPVVSDGITYCRGAAVVSFSRG*WGRQPG
Trigger: CCCAGGCTGTCTTCCCCACCATCCTCGGGAAAATGA...CACCACTGCAGCTCCTCGACAGTAGGTGATGCCGTCGGAGACTACTGGACCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208625.2
CDS-3UTR CCA 90 bp GCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATCCACCATGTGGATCCCTGGGTTaGCTCTCTCCAGGAGGCTGG +
Preference number: 4 (lower is better)
Translates to: AQPRHDDVGSGDGTQNPPCGSLG*LSPGGW
Trigger: CCAGCCTCCTGGAGAGAGCCAACCCAGGGATCCACA...TGGTGGATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
3UTR CAA 72 bp GGCCTGTGGGCCAGGACTATACTGGAAAGAATGACTTaGTCCTTGTCCGGCCTCTCTGTTCCCTCCAGGCCT +
Preference number: 4 (lower is better)
Translates to: GLWARTILERMT*SLSGLSVPSRP
Trigger: AGGCCTGGAGGGAACAGAGAGGCCGGACAAGGACAAAGTCATTCTTTCCAGTATAGTCCTGGCCCACAGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207642.2
ENSMUST00000208625.2
3UTR CAA 72 bp AAGTTGAAGGTTTCGAATAGGATCTGGGGAGGAAGATaGGCATGCTGGCTGGCCAGGTGGCACACACTGCCC +
Preference number: 4 (lower is better)
Translates to: KLKVSNRIWGGR*ACWLARWHTLP
Trigger: GGGCAGTGTGTGCCACCTGGCCAGCCAGCATGCCAATCTTCCTCCCCAGATCCTATTCGAAACCTTCAACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000208038.2
ENSMUST00000208761.2
3UTR CAA 72 bp TGGGCCAGGACTATACTGGAAAGAATGACTTTGTCCTaGTCCGGCCTCTCTGTTCCCTCCAGGCCTCCCACT +
Preference number: 4 (lower is better)
Translates to: WARTILERMTLS*SGLSVPSRPPT
Trigger: AGTGGGAGGCCTGGAGGGAACAGAGAGGCCGGACAAGGACAAAGTCATTCTTTCCAGTATAGTCCTGGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207642.2
ENSMUST00000208625.2
CDS-3UTR TCA 90 bp GCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATCCACCAGGGGGCCTGAGTTCCTaGAAAGCCCACCTTACTGAA +
Preference number: 4 (lower is better)
Translates to: AQPRHDDVGSGDGTQNPPGGLSS*KAHLTE
Trigger: TTCAGTAAGGTGGGCTTTTCAGGAACTCAGGCCCCC...TGGTGGATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000134455.3
ENSMUST00000152910.3
ENSMUST00000207482.2
ENSMUST00000207630.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS-3UTR TCA 90 bp TGGTGGGATTTCTCACAGGACATGATGCTCTCCAGGGTGAGCATGTGGATCCCTGGGGGCCTGAGTTCCTaGAAAGCCCACCTTACTGAA +
Preference number: 4 (lower is better)
Translates to: WWDFSQDMMLSRVSMWIPGGLSS*KAHLTE
Trigger: TTCAGTAAGGTGGGCTTTTCAGGAACTCAGGCCCCC...AGGGATCCACATGCTCACCCTGGAGAGCATCATGTCCTGTGAGAAATCCCACCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS-3UTR TCA 90 bp GGAGAGACCACCTTTGCCATCTCTTTCTGCATCCGGAATCGTAGGCCAGTACAGGGGGGCCTGAGTTCCTaGAAAGCCCACCTTACTGAA +
Preference number: 4 (lower is better)
Translates to: GETTFAISFCIRNRRPVQGGLSS*KAHLTE
Trigger: TTCAGTAAGGTGGGCTTTTCAGGAACTCAGGCCCCC...CTGTACTGGCCTACGATTCCGGATGCAGAAAGAGATGGCAAAGGTGGTCTCTCC
54% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS-3UTR CCA 90 bp ATGGCTAAGGCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAATCATTTTCCCGAGGATaGTGGGGAAGACAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: MAKAQPRHDDVGSGDGTQSFSRG*WGRQPG
Trigger: CCCAGGCTGTCTTCCCCACCATCCTCGGGAAAATGA...TTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGCCTTAGCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000134455.3
ENSMUST00000152910.3
ENSMUST00000207482.2
ENSMUST00000207630.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS-3UTR CCA 90 bp AGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGTGTGGATCCCTGGGTTaGCTCTCTCCAGGAGGCTGG +
Preference number: 4 (lower is better)
Translates to: RRPCSELVLIMPCSVWLRCGSLG*LSPGGW
Trigger: CCAGCCTCCTGGAGAGAGCCAACCCAGGGATCCACA...CCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CCA 90 bp GAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCATGGGCCAGTACAGGCACTaGTGCCACCAGTCAGTACGA +
Preference number: 4 (lower is better)
Translates to: ELVLIMPCSVWLRPSLGMGQYRH*CHQSVR
Trigger: TCGTACTGACTGGTGGCACCAGTGCCTGTACTGGCC...CATGCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
3UTR CAA 72 bp AGAGGTTCTGCCAGAAGCGATAAGGGAGAGGACGGCTaGATTAGCTGTGTACAGGGCGGGGAAGTTGAAGGT +
Preference number: 4 (lower is better)
Translates to: RGSARSDKGEDG*ISCVQGGEVEG
Trigger: ACCTTCAACTTCCCCGCCCTGTACACAGCTAATCAAGCCGTCCTCTCCCTTATCGCTTCTGGCAGAACCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000134455.3
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208761.2
CDS-3UTR TCA 90 bp GAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCATGGCACCTCTGAGCACATaGAAGCCTCTTGCCCTAGGT +
Preference number: 4 (lower is better)
Translates to: ELVLIMPCSVWLRPSLGMAPLST*KPLALG
Trigger: ACCTAGGGCAAGAGGCTTTCATGTGCTCAGAGGTGC...CATGCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR TCA 90 bp GCTAAGGCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATGCACCTCTGAGCACATaGAAGCCTCTTGCCCTAGGT +
Preference number: 4 (lower is better)
Translates to: AKAQPRHDDVGSGDGTQNAPLST*KPLALG
Trigger: ACCTAGGGCAAGAGGCTTTCATGTGCTCAGAGGTGC...ATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGCCTTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CCA 90 bp CCTTCAGGAGAAAGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCACTCTCTCCAGGAGGCTaGTGTCGAAGAGCACCTCTG +
Preference number: 4 (lower is better)
Translates to: PSGERRPCSELVLIMPCSLSPGG*CRRAPL
Trigger: CAGAGGTGCTCTTCGACACCAGCCTCCTGGAGAGAG...TGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCTTTCTCCTGAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CCA 90 bp GCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCATGATCTCTCTCCAGGAGGCTaGTGTCGAAGAGCACCTCTG +
Preference number: 4 (lower is better)
Translates to: ACFDYALLSMAKAQPRHDLSPGG*CRRAPL
Trigger: CAGAGGTGCTCTTCGACACCAGCCTCCTGGAGAGAG...ATCATGCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CCA 90 bp AGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGGGCCAGTACAGGCACTaGTGCCACCAGTCAGTACGA +
Preference number: 4 (lower is better)
Translates to: RRPCSELVLIMPCSVWLRGQYRH*CHQSVR
Trigger: TCGTACTGACTGGTGGCACCAGTGCCTGTACTGGCC...CCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CCA 90 bp AAGGCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATCCAGGAGGGAAGACAAGATaGAGGCACCTATCCAGGCAC +
Preference number: 4 (lower is better)
Translates to: KAQPRHDDVGSGDGTQNPGGKTR*RHLSRH
Trigger: GTGCCTGGATAGGTGCCTCCATCTTGTCTTCCCTCC...TGGATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
3UTR CAA 72 bp CCCATCTCCAGATTCAATAGCTGTTCCTTCTCTACATaGTCCCAGTTGGTGATGGCTCCTCGGGAGATGGGG +
Preference number: 4 (lower is better)
Translates to: PISRFNSCSFST*SQLVMAPREMG
Trigger: CCCCATCTCCCGAGGAGCCATCACCAACTGGGACAATGTAGAGAAGGAACAGCTATTGAATCTGGAGATGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208625.2
CDS-3UTR CCA 90 bp TCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTTCTGCATCCGGAATCTCATTTTCCCGAGGATaGTGGGGAAGACAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: SHRSLERPPLPSLSASGISFSRG*WGRQPG
Trigger: CCCAGGCTGTCTTCCCCACCATCCTCGGGAAAATGA...GATTCCGGATGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS-3UTR CCA 90 bp GCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCATGATGGAGGGAAGACAAGATaGAGGCACCTATCCAGGCAC +
Preference number: 4 (lower is better)
Translates to: ACFDYALLSMAKAQPRHDGGKTR*RHLSRH
Trigger: GTGCCTGGATAGGTGCCTCCATCTTGTCTTCCCTCC...ATCATGCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR TCA 90 bp TACTGTCCTTCAGGAGAAAGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCGGGGGCCTGAGTTCCTaGAAAGCCCACCTTACTGAA +
Preference number: 4 (lower is better)
Translates to: YCPSGERRPCSELVLIMPGGLSS*KAHLTE
Trigger: TTCAGTAAGGTGGGCTTTTCAGGAACTCAGGCCCCC...GGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCTTTCTCCTGAAGGACAGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000152910.3
ENSMUST00000207482.2
ENSMUST00000207630.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS-3UTR TCA 90 bp GCTAAGGCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATGATCTAAGTGGCCTCTaGGATGTGCAGATCATGCCT +
Preference number: 4 (lower is better)
Translates to: AKAQPRHDDVGSGDGTQNDLSGL*DVQIMP
Trigger: AGGCATGATCTGCACATCTCAGAGGCCACTTAGATC...ATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGCCTTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207482.2
ENSMUST00000207630.2
ENSMUST00000208761.2
CDS-3UTR CCA 90 bp TCAGGAGAAAGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATCATTTTCCCGAGGATaGTGGGGAAGACAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: SGERRPCSELVLIMPCSVSFSRG*WGRQPG
Trigger: CCCAGGCTGTCTTCCCCACCATCCTCGGGAAAATGA...TACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCTTTCTCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000152910.3
ENSMUST00000207482.2
ENSMUST00000207630.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS-3UTR CCA 90 bp CGTGCTCAGGAGTACATCTTGCAGCAGGCTGTGGATTCAGGGAGACTAAGCCTGGTTTCCAGATCTAAGTaGCCTCTGAGATGTGCAGAT +
Preference number: 4 (lower is better)
Translates to: RAQEYILQQAVDSGRLSLVSRSK*PLRCAD
Trigger: ATCTGCACATCTCAGAGGCCACTTAGATCTGGAAAC...CAGGCTTAGTCTCCCTGAATCCACAGCCTGCTGCAAGATGTACTCCTGAGCACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208761.2
3UTR CAA 72 bp TCAGTATGGCTAAGGCCCAGCCTAGGCATGATGATGTaGGCTCAGGTGATGGAACCCAAAATCCACCAGTCA +
Preference number: 4 (lower is better)
Translates to: SVWLRPSLGMMM*AQVMEPKIHQS
Trigger: TGACTGGTGGATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGCCTTAGCCATACTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
3UTR CAA 72 bp TCTGACCAAAGCAGCCTCAGGGAGGAAAGGGTTTTGTaGGTGAATACTTGCTGGTCACGGTTCACCATGAGG +
Preference number: 4 (lower is better)
Translates to: SDQSSLREERVL*VNTCWSRFTMR
Trigger: CCTCATGGTGAACCGTGACCAGCAAGTATTCACCAACAAAACCCTTTCCTCCCTGAGGCTGCTTTGGTCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208761.2
3UTR CAA 72 bp CACTCTGACCAAAGCAGCCTCAGGGAGGAAAGGGTTTaGTTGGTGAATACTTGCTGGTCACGGTTCACCATG +
Preference number: 4 (lower is better)
Translates to: HSDQSSLREERV*LVNTCWSRFTM
Trigger: CATGGTGAACCGTGACCAGCAAGTATTCACCAACAAAACCCTTTCCTCCCTGAGGCTGCTTTGGTCAGAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208761.2
CDS-3UTR TCA 90 bp CCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCAAGGATAGCCATTCATaGCAGGCACGAAGTAGGTCA +
Preference number: 4 (lower is better)
Translates to: PCSELVLIMPCSVWLRPSKDSHS*QARSRS
Trigger: TGACCTACTTCGTGCCTGTCATGAATGGCTATCCTT...GCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR TCA 90 bp AAGGCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATCCAAAGGATAGCCATTCATaGCAGGCACGAAGTAGGTCA +
Preference number: 4 (lower is better)
Translates to: KAQPRHDDVGSGDGTQNPKDSHS*QARSRS
Trigger: TGACCTACTTCGTGCCTGTCATGAATGGCTATCCTT...TGGATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR TCA 90 bp TCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCTGCCATCTGGCAGTGTaGATTTCTTCTGGAAGGATG +
Preference number: 4 (lower is better)
Translates to: SELVLIMPCSVWLRPSLGCHLAV*ISSGRM
Trigger: CATCCTTCCAGAAGAAATTCACACTGCCAGATGGCA...GCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR TCA 90 bp TACTGTCCTTCAGGAGAAAGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCCCTTGGCCCTGTGCCTaGGTCATTCTGGATTTAGCT +
Preference number: 4 (lower is better)
Translates to: YCPSGERRPCSELVLIMPPWPCA*VILDLA
Trigger: AGCTAAATCCAGAATGACTCAGGCACAGGGCCAAGG...GGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCTTTCTCCTGAAGGACAGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000207482.2
ENSMUST00000207630.2
ENSMUST00000208761.2
CDS-3UTR GCA 90 bp AGTTACCTTCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTTCTGCATGTGGCCTCTGAGATGTaGAGATCATGCCTTGGCCCT +
Preference number: 4 (lower is better)
Translates to: SYLHTEVWRDHLCHLFLHVASEM*RSCLGP
Trigger: AGGGCCAAGGCATGATCTGCACATCTCAGAGGCCAC...ATGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207482.2
ENSMUST00000208761.2
CDS-3UTR CCA 90 bp AGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCCTTCACACAGAAGTCTaGAGAGACCACCTTTGCCAT +
Preference number: 4 (lower is better)
Translates to: RPCSELVLIMPCSVWLRPLHTEV*RDHLCH
Trigger: ATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAG...GGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CCA 90 bp CCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTTCACACAGAAGTCTaGAGAGACCACCTTTGCCAT +
Preference number: 4 (lower is better)
Translates to: PCSELVLIMPCSVWLRPSLHTEV*RDHLCH
Trigger: ATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAG...GCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CCA 90 bp ATGGCTAAGGCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAATCCAGGCACTATACTTaGCATATGGAGAGGCAGTTA +
Preference number: 4 (lower is better)
Translates to: MAKAQPRHDDVGSGDGTQSRHYT*HMERQL
Trigger: TAACTGCCTCTCCATATGCCAAGTATAGTGCCTGGA...TTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGCCTTAGCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CCA 90 bp GCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATCCACCATCCAGGCACTATACTTaGCATATGGAGAGGCAGTTA +
Preference number: 4 (lower is better)
Translates to: AQPRHDDVGSGDGTQNPPSRHYT*HMERQL
Trigger: TAACTGCCTCTCCATATGCCAAGTATAGTGCCTGGA...TGGTGGATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR TCA 90 bp AGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGTGCCATCTGGCAGTGTaGATTTCTTCTGGAAGGATG +
Preference number: 4 (lower is better)
Translates to: RRPCSELVLIMPCSVWLRCHLAV*ISSGRM
Trigger: CATCCTTCCAGAAGAAATTCACACTGCCAGATGGCA...CCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR TCA 90 bp GTTACCTTCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTTCTGCATCGATCTAAGTGGCCTCTaGGATGTGCAGATCATGCCT +
Preference number: 4 (lower is better)
Translates to: VTFTQKSGETTFAISFCIDLSGL*DVQIMP
Trigger: AGGCATGATCTGCACATCTCAGAGGCCACTTAGATC...GATGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207482.2
ENSMUST00000208761.2
CDS-3UTR TCA 90 bp CTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATCCACCAGTCAGAAGATCTAAGTGGCCTCTaGGATGTGCAGATCATGCCT +
Preference number: 4 (lower is better)
Translates to: LGMMMLAQVMEPKIHQSEDLSGL*DVQIMP
Trigger: AGGCATGATCTGCACATCTCAGAGGCCACTTAGATC...TTCTGACTGGTGGATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207482.2
ENSMUST00000208761.2
CDS-3UTR TCA 90 bp GCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCATGATGCTGTTCCTGCACCATaGTGGGTAGAAATGCTGTTT +
Preference number: 4 (lower is better)
Translates to: ACFDYALLSMAKAQPRHDAVPAP*WVEMLF
Trigger: AAACAGCATTTCTACCCATCATGGTGCAGGAACAGC...ATCATGCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207630.2
CDS-3UTR GCA 90 bp AAGGCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATCCACACATGAAAGCCTCTTaGCCTAGGTTGATTTCCTTG +
Preference number: 4 (lower is better)
Translates to: KAQPRHDDVGSGDGTQNPHMKAS*PRLISL
Trigger: CAAGGAAATCAACCTAGGGCAAGAGGCTTTCATGTG...TGGATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR GCA 90 bp AGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCCACATGAAAGCCTCTTaGCCTAGGTTGATTTCCTTG +
Preference number: 4 (lower is better)
Translates to: RPCSELVLIMPCSVWLRPHMKAS*PRLISL
Trigger: CAAGGAAATCAACCTAGGGCAAGAGGCTTTCATGTG...GGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CCA 90 bp CCATCTGGCAGTGTGAATTTCTTCTGGAAGGATGGTGCTGAAGTTTTTGACATCTCATTTTCCCGAGGATaGTGGGGAAGACAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: PSGSVNFFWKDGAEVFDISFSRG*WGRQPG
Trigger: CCCAGGCTGTCTTCCCCACCATCCTCGGGAAAATGA...GATGTCAAAAACTTCAGCACCATCCTTCCAGAAGAAATTCACACTGCCAGATGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 9 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208153.2
ENSMUST00000208457.2
ENSMUST00000208625.2
ENSMUST00000208761.2
CDS-3UTR CCA 90 bp GCTAAGGCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATACTCGAGGTCAGCTATaGTCTCTAACACATTCCCAT +
Preference number: 4 (lower is better)
Translates to: AKAQPRHDDVGSGDGTQNTRGQL*SLTHSH
Trigger: ATGGGAATGTGTTAGAGACCATAGCTGACCTCGAGT...ATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGCCTTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CCA 90 bp CCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCGTTTCCAGATCTAAGTaGCCTCTGAGATGTGCAGAT +
Preference number: 4 (lower is better)
Translates to: PCSELVLIMPCSVWLRPSVSRSK*PLRCAD
Trigger: ATCTGCACATCTCAGAGGCCACTTAGATCTGGAAAC...GCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207482.2
ENSMUST00000207630.2
ENSMUST00000208761.2
3UTR CAA 72 bp GAAGACAAGATGGAGGCACCTATCCAGGCACTATACTaGGCATATGGAGAGGCAGTTACCTTCACACAGAAG +
Preference number: 4 (lower is better)
Translates to: EDKMEAPIQALY*AYGEAVTFTQK
Trigger: CTTCTGTGTGAAGGTAACTGCCTCTCCATATGCCAAGTATAGTGCCTGGATAGGTGCCTCCATCTTGTCTTC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS-3UTR TCA 90 bp GAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCATGCTGACAACAGTTTCATaGGGTATAGAGTCAGGTCTT +
Preference number: 4 (lower is better)
Translates to: ELVLIMPCSVWLRPSLGMLTTVS*GIESGL
Trigger: AAGACCTGACTCTATACCTCATGAAACTGTTGTCAG...CATGCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR TCA 90 bp CCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTGACAACAGTTTCATaGGGTATAGAGTCAGGTCTT +
Preference number: 4 (lower is better)
Translates to: PCSELVLIMPCSVWLRPSLTTVS*GIESGL
Trigger: AAGACCTGACTCTATACCTCATGAAACTGTTGTCAG...GCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR TCA 90 bp CCATCTGGCAGTGTGAATTTCTTCTGGAAGGATGGTGCTGAAGTTTTTGACATCCCTTGGCCCTGTGCCTaGGTCATTCTGGATTTAGCT +
Preference number: 4 (lower is better)
Translates to: PSGSVNFFWKDGAEVFDIPWPCA*VILDLA
Trigger: AGCTAAATCCAGAATGACTCAGGCACAGGGCCAAGG...GATGTCAAAAACTTCAGCACCATCCTTCCAGAAGAAATTCACACTGCCAGATGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000207482.2
ENSMUST00000208761.2
CDS-3UTR TCA 90 bp CACAGTAACCACCTTGTGCTCCCTGCTGTCAGATCCCACAGTGCATCACTTCACTTCAATAGCTGTTCCTaGGTCATTCTGGATTTAGCT +
Preference number: 4 (lower is better)
Translates to: HSNHLVLPAVRSHSASLHFNSCS*VILDLA
Trigger: AGCTAAATCCAGAATGACTCAGGAACAGCTATTGAA...GTGAAGTGATGCACTGTGGGATCTGACAGCAGGGAGCACAAGGTGGTTACTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
CDS-3UTR GCA 90 bp GCTAAGGCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATCATGTTGTAGTCCAGTaGCACATAGCTGTATTTGTC +
Preference number: 4 (lower is better)
Translates to: AKAQPRHDDVGSGDGTQNHVVVQ*HIAVFV
Trigger: GACAAATACAGCTATGTGGCACTGGACTACAACATG...ATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGCCTTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR GCA 90 bp TCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCCATGTTGTAGTCCAGTaGCACATAGCTGTATTTGTC +
Preference number: 4 (lower is better)
Translates to: SELVLIMPCSVWLRPSLGHVVVQ*HIAVFV
Trigger: GACAAATACAGCTATGTGGCACTGGACTACAACATG...GCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CCA 90 bp TCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCACTATACTTGGCATATaGAGAGGCAGTTACCTTCAC +
Preference number: 4 (lower is better)
Translates to: SELVLIMPCSVWLRPSLGTILGI*RGSYLH
Trigger: GTGAAGGTAACTGCCTCTCCATATGCCAAGTATAGT...GCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR TCA 90 bp TGGTGGGATTTCTCACAGGACATGATGCTCTCCAGGGTGAGCATGTGGATCCCTCTCAATCTAGTTTTCTaGGTCATTCTGGATTTAGCT +
Preference number: 4 (lower is better)
Translates to: WWDFSQDMMLSRVSMWIPLNLVF*VILDLA
Trigger: AGCTAAATCCAGAATGACTCAGAAAACTAGATTGAG...AGGGATCCACATGCTCACCCTGGAGAGCATCATGTCCTGTGAGAAATCCCACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208038.2
CDS-3UTR TCA 90 bp TCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTTCTGCATCCGGAATCATAGGATCTGCACCATaGTGGGTAGAAATGCTGTTT +
Preference number: 4 (lower is better)
Translates to: SHRSLERPPLPSLSASGIIGSAP*WVEMLF
Trigger: AAACAGCATTTCTACCCATCATGGTGCAGATCCTAT...GATTCCGGATGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207482.2
CDS-3UTR CCA 90 bp TCAGGAGAAAGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTACTATGTCCAGCTTGGTaGTTGACAAGTGCAAAGGAT +
Preference number: 4 (lower is better)
Translates to: SGERRPCSELVLIMPCSVLCPAW*LTSAKD
Trigger: ATCCTTTGCACTTGTCAACCACCAAGCTGGACATAG...TACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCTTTCTCCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CCA 90 bp AAGGCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATCCAAGTGTGAATTTCTTCTaGAAGGATGGTGCTGAAGTT +
Preference number: 4 (lower is better)
Translates to: KAQPRHDDVGSGDGTQNPSVNFF*KDGAEV
Trigger: AACTTCAGCACCATCCTTCCAGAAGAAATTCACACT...TGGATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CCA 90 bp CTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCATGATGGATTTCCTTGCCATCTaGCAGTGTGAATTTCTTCTG +
Preference number: 4 (lower is better)
Translates to: LVLIMPCSVWLRPSLGMMDFLAI*QCEFLL
Trigger: CAGAAGAAATTCACACTGCCAGATGGCAAGGAAATC...CATCATGCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CCA 90 bp GCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATCCACCAATTTCCAAATACTCATaGTTTGTGATCCACATGTCC +
Preference number: 4 (lower is better)
Translates to: AQPRHDDVGSGDGTQNPPISKYS*FVIHMS
Trigger: GGACATGTGGATCACAAACCATGAGTATTTGGAAAT...TGGTGGATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
3UTR CAA 72 bp ATAATCATATCATCTTATAGACAAGCCATCTTTGTCTaGAGGGTCCCAGAGGCCATGCCCTGTCCTGGTGGT +
Preference number: 4 (lower is better)
Translates to: IIISSYRQAIFV*RVPEAMPCPGG
Trigger: ACCACCAGGACAGGGCATGGCCTCTGGGACCCTCAAGACAAAGATGGCTTGTCTATAAGATGATATGATTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134455.3
3UTR CAA 72 bp GAGCACATGAAAGCCTCTTGCCCTAGGTTGATTTCCTaGCCATCTGGCAGTGTGAATTTCTTCTGGAAGGAT +
Preference number: 4 (lower is better)
Translates to: EHMKASCPRLIS*PSGSVNFFWKD
Trigger: ATCCTTCCAGAAGAAATTCACACTGCCAGATGGCAAGGAAATCAACCTAGGGCAAGAGGCTTTCATGTGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208153.2
ENSMUST00000208457.2
ENSMUST00000208625.2
ENSMUST00000208761.2
CDS-3UTR TCA 90 bp CTAAATATGACAGAAGGGCCAATTTCCAAATACTCATGGTTTGTGATCCACATGGGGGGCCTGAGTTCCTaGAAAGCCCACCTTACTGAA +
Preference number: 4 (lower is better)
Translates to: LNMTEGPISKYSWFVIHMGGLSS*KAHLTE
Trigger: TTCAGTAAGGTGGGCTTTTCAGGAACTCAGGCCCCC...CATGTGGATCACAAACCATGAGTATTTGGAAATTGGCCCTTCTGTCATATTTAG
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207482.2
ENSMUST00000207642.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS-3UTR TCA 90 bp AGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGGTTTCGAATAGGATCTaGGTCATTCTGGATTTAGCT +
Preference number: 4 (lower is better)
Translates to: RRPCSELVLIMPCSVWLRVSNRI*VILDLA
Trigger: AGCTAAATCCAGAATGACTCAGATCCTATTCGAAAC...CCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152910.3
CDS-3UTR TCA 90 bp TTGAATAGAGTCCTCTGGTGGGATTTCTCACAGGACATGATGCTCTCCAGGGTGTTCAATAGCTGTTCCTaGGTCATTCTGGATTTAGCT +
Preference number: 4 (lower is better)
Translates to: LNRVLWWDFSQDMMLSRVFNSCS*VILDLA
Trigger: AGCTAAATCCAGAATGACTCAGGAACAGCTATTGAA...CACCCTGGAGAGCATCATGTCCTGTGAGAAATCCCACCAGAGGACTCTATTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207235.2
ENSMUST00000208457.2
CDS-3UTR GCA 90 bp AGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGTTCAATAGCTGTTCCTaGACCATGATGGGTAGAAAT +
Preference number: 4 (lower is better)
Translates to: RRPCSELVLIMPCSVWLRFNSCS*TMMGRN
Trigger: ATTTCTACCCATCATGGTGCAGGAACAGCTATTGAA...CCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207630.2
CDS-3UTR CCA 90 bp CTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCATGATGAGTGTGAATTTCTTCTaGAAGGATGGTGCTGAAGTT +
Preference number: 4 (lower is better)
Translates to: LVLIMPCSVWLRPSLGMMSVNFF*KDGAEV
Trigger: AACTTCAGCACCATCCTTCCAGAAGAAATTCACACT...CATCATGCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CCA 90 bp TCAGGAGAAAGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTAGATTTCCTTGCCATCTaGCAGTGTGAATTTCTTCTG +
Preference number: 4 (lower is better)
Translates to: SGERRPCSELVLIMPCSVDFLAI*QCEFLL
Trigger: CAGAAGAAATTCACACTGCCAGATGGCAAGGAAATC...TACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCTTTCTCCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CCA 90 bp TCAGGAGAAAGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTAACTATACTTGGCATATaGAGAGGCAGTTACCTTCAC +
Preference number: 4 (lower is better)
Translates to: SGERRPCSELVLIMPCSVTILGI*RGSYLH
Trigger: GTGAAGGTAACTGCCTCTCCATATGCCAAGTATAGT...TACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCTTTCTCCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CCA 90 bp AAGGCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATCCAATTTCCAAATACTCATaGTTTGTGATCCACATGTCC +
Preference number: 4 (lower is better)
Translates to: KAQPRHDDVGSGDGTQNPISKYS*FVIHMS
Trigger: GGACATGTGGATCACAAACCATGAGTATTTGGAAAT...TGGATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR TCA 90 bp ACCAGTCAGAAGCATCTTCTAAATATGACAGAAGGGCCAATTTCCAAATACTCACCTTGGCCCTGTGCCTaGGTCATTCTGGATTTAGCT +
Preference number: 4 (lower is better)
Translates to: TSQKHLLNMTEGPISKYSPWPCA*VILDLA
Trigger: AGCTAAATCCAGAATGACTCAGGCACAGGGCCAAGG...TGAGTATTTGGAAATTGGCCCTTCTGTCATATTTAGAAGATGCTTCTGACTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000207482.2
ENSMUST00000208761.2
CDS-3UTR CCA 90 bp TTTTTGACATCTCCATGTTGTAGTCCAGTGCCACATAGCTGTATTTGTCTTTCAGTTTCCAGATCTAAGTaGCCTCTGAGATGTGCAGAT +
Preference number: 4 (lower is better)
Translates to: FLTSPCCSPVPHSCICLSVSRSK*PLRCAD
Trigger: ATCTGCACATCTCAGAGGCCACTTAGATCTGGAAAC...TGAAAGACAAATACAGCTATGTGGCACTGGACTACAACATGGAGATGTCAAAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000207482.2
ENSMUST00000208761.2
CDS-3UTR TCA 90 bp TTTTTGACATCTCCATGTTGTAGTCCAGTGCCACATAGCTGTATTTGTCTTTCATTCAATAGCTGTTCCTaGGTCATTCTGGATTTAGCT +
Preference number: 4 (lower is better)
Translates to: FLTSPCCSPVPHSCICLSFNSCS*VILDLA
Trigger: AGCTAAATCCAGAATGACTCAGGAACAGCTATTGAA...TGAAAGACAAATACAGCTATGTGGCACTGGACTACAACATGGAGATGTCAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000207235.2
ENSMUST00000208153.2
ENSMUST00000208457.2
CDS-3UTR CAA 90 bp GAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCATGATGTGGATCCCTGGGTaGGCTCTCTCCAGGAGGCTG +
Preference number: 5 (lower is better)
Translates to: ELVLIMPCSVWLRPSLGMMWIPG*ALSRRL
Trigger: CAGCCTCCTGGAGAGAGCCAACCCAGGGATCCACAT...CATGCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CAA 90 bp ATGGCTAAGGCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAACTGTTCAGGGGCAATTaGGAGGGAGTGGTAGAAGGA +
Preference number: 5 (lower is better)
Translates to: MAKAQPRHDDVGSGDGTQLFRGN*EGVVEG
Trigger: TCCTTCTACCACTCCCTCCAAATTGCCCCTGAACAG...TTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGCCTTAGCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000152910.3
ENSMUST00000207482.2
ENSMUST00000207630.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS-3UTR CAA 90 bp GGGACCTTCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTTCTGCATCCTGTTCAGGGGCAATTaGGAGGGAGTGGTAGAAGGA +
Preference number: 5 (lower is better)
Translates to: GTFTQKSGETTFAISFCILFRGN*EGVVEG
Trigger: TCCTTCTACCACTCCCTCCAAATTGCCCCTGAACAG...GATGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207235.2
CDS-3UTR CAA 90 bp GGGAAGACAAGATGGAGGCACCTATCCAGGCACTATACTTGGCATATGGAGAGGCTGTTCAGGGGCAATTaGGAGGGAGTGGTAGAAGGA +
Preference number: 5 (lower is better)
Translates to: GKTRWRHLSRHYTWHMERLFRGN*EGVVEG
Trigger: TCCTTCTACCACTCCCTCCAAATTGCCCCTGAACAG...CCTCTCCATATGCCAAGTATAGTGCCTGGATAGGTGCCTCCATCTTGTCTTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000207482.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS-3UTR CAA 90 bp GAGGCAGTTACCTTCACACAGAAGTCTGGAGAGACCACCTTTGCCATCTCTTTCCTGTTCAGGGGCAATTaGGAGGGAGTGGTAGAAGGA +
Preference number: 5 (lower is better)
Translates to: EAVTFTQKSGETTFAISFLFRGN*EGVVEG
Trigger: TCCTTCTACCACTCCCTCCAAATTGCCCCTGAACAG...GAAAGAGATGGCAAAGGTGGTCTCTCCAGACTTCTGTGTGAAGGTAACTGCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000207482.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS-3UTR CAA 90 bp CCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCTACAGGGCGGGGAAGTaGAAGGTTTCGAATAGGATC +
Preference number: 5 (lower is better)
Translates to: PCSELVLIMPCSVWLRPSYRAGK*KVSNRI
Trigger: GATCCTATTCGAAACCTTCAACTTCCCCGCCCTGTA...GCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207482.2
CDS-3UTR CAA 90 bp AGGCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATCCACCCTAGGTTGATTTCCTaGCCATCTGGCAGTGTGAAT +
Preference number: 5 (lower is better)
Translates to: RPSLGMMMLAQVMEPKIHPRLIS*PSGSVN
Trigger: ATTCACACTGCCAGATGGCAAGGAAATCAACCTAGG...GTGGATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CAA 90 bp GCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCATGATCTGGAGAGACCACCTTaGCCATCTCTTTCTGCATCC +
Preference number: 5 (lower is better)
Translates to: ACFDYALLSMAKAQPRHDLERPP*PSLSAS
Trigger: GGATGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAG...ATCATGCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CAA 90 bp GCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCATGATGTGATCCACATGTCCTaGAACAGAGGGAGGGAAGAC +
Preference number: 5 (lower is better)
Translates to: ACFDYALLSMAKAQPRHDVIHMS*NRGRED
Trigger: GTCTTCCCTCCCTCTGTTCAAGGACATGTGGATCAC...ATCATGCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CAA 90 bp AGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGGTGATCCACATGTCCTaGAACAGAGGGAGGGAAGAC +
Preference number: 5 (lower is better)
Translates to: RRPCSELVLIMPCSVWLRVIHMS*NRGRED
Trigger: GTCTTCCCTCCCTCTGTTCAAGGACATGTGGATCAC...CCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CAA 90 bp TGGTGGGATTTCTCACAGGACATGATGCTCTCCAGGGTGAGCATGTGGATCCCTAACCCCTCTAGCACATaGGTATGTTTCATTTTCCCG +
Preference number: 5 (lower is better)
Translates to: WWDFSQDMMLSRVSMWIPNPSST*VCFIFP
Trigger: CGGGAAAATGAAACATACCAATGTGCTAGAGGGGTT...AGGGATCCACATGCTCACCCTGGAGAGCATCATGTCCTGTGAGAAATCCCACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS-3UTR CAA 90 bp TACTGTCCTTCAGGAGAAAGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCCTGTTCAGGGGCAATTaGGAGGGAGTGGTAGAAGGA +
Preference number: 5 (lower is better)
Translates to: YCPSGERRPCSELVLIMPLFRGN*EGVVEG
Trigger: TCCTTCTACCACTCCCTCCAAATTGCCCCTGAACAG...GGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCTTTCTCCTGAAGGACAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000152910.3
ENSMUST00000207482.2
ENSMUST00000207630.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS-3UTR CAA 90 bp TACTGTCCTTCAGGAGAAAGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCCTGGAGAGACCACCTTaGCCATCTCTTTCTGCATCC +
Preference number: 5 (lower is better)
Translates to: YCPSGERRPCSELVLIMPLERPP*PSLSAS
Trigger: GGATGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAG...GGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCTTTCTCCTGAAGGACAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CAA 90 bp CCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCATCCAGGCACTATACTaGGCATATGGAGAGGCAGTT +
Preference number: 5 (lower is better)
Translates to: PCSELVLIMPCSVWLRPSIQALY*AYGEAV
Trigger: AACTGCCTCTCCATATGCCAAGTATAGTGCCTGGAT...GCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS TCA 90 bp AGTCCCAAACAGCAGGTTCCTTCTTCTCTACATTGTCCCAGTTGGTaGTGGCTCCTCGGGAGATGGGGTAGTACATATTCAGTTCTGTTC +
Preference number: 5 (lower is better)
Translates to: SPKQQVPSSLHCPSW*WLLGRWGSTYSVLF
Trigger: GAACAGAACTGAATATGTACTACCCCATCTCCCGAGGAGCCATCACCAACTGGGACAATGTAGAGAAGAAGGAACCTGCTGTTTGGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134455.3
CDS-3UTR CAA 90 bp AAGTCTGGAGAGACCACCTTTGCCATCTCTTTCTGCATCCGGAATCGTAGGCCAAACCCCTCTAGCACATaGGTATGTTTCATTTTCCCG +
Preference number: 5 (lower is better)
Translates to: KSGETTFAISFCIRNRRPNPSST*VCFIFP
Trigger: CGGGAAAATGAAACATACCAATGTGCTAGAGGGGTT...TGGCCTACGATTCCGGATGCAGAAAGAGATGGCAAAGGTGGTCTCTCCAGACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS-3UTR CAA 90 bp AAGGCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATCCAAACCCCTCTAGCACATaGGTATGTTTCATTTTCCCG +
Preference number: 5 (lower is better)
Translates to: KAQPRHDDVGSGDGTQNPNPSST*VCFIFP
Trigger: CGGGAAAATGAAACATACCAATGTGCTAGAGGGGTT...TGGATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000152910.3
ENSMUST00000207482.2
ENSMUST00000207630.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS-3UTR CAA 90 bp GAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCATGAACCCCTCTAGCACATaGGTATGTTTCATTTTCCCG +
Preference number: 5 (lower is better)
Translates to: ELVLIMPCSVWLRPSLGMNPSST*VCFIFP
Trigger: CGGGAAAATGAAACATACCAATGTGCTAGAGGGGTT...CATGCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000152910.3
ENSMUST00000207482.2
ENSMUST00000207630.2
ENSMUST00000208038.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS-3UTR CAA 90 bp CCATTGTCTGACAACAGTTTCATGAGGTATAGAGTCAGGTCTTGGCCAGCTATGCTGTTCAGGGGCAATTaGGAGGGAGTGGTAGAAGGA +
Preference number: 5 (lower is better)
Translates to: PLSDNSFMRYRVRSWPAMLFRGN*EGVVEG
Trigger: TCCTTCTACCACTCCCTCCAAATTGCCCCTGAACAG...CATAGCTGGCCAAGACCTGACTCTATACCTCATGAAACTGTTGTCAGACAATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000208038.2
ENSMUST00000208153.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS-3UTR CAA 90 bp GTAGTCCAGTGCCACATAGCTGTATTTGTCTTTCAGGTCTCGGATGTACTCGAGTACAGGGCGGGGAAGTaGAAGGTTTCGAATAGGATC +
Preference number: 5 (lower is better)
Translates to: VVQCHIAVFVFQVSDVLEYRAGK*KVSNRI
Trigger: GATCCTATTCGAAACCTTCAACTTCCCCGCCCTGTA...CTCGAGTACATCCGAGACCTGAAAGACAAATACAGCTATGTGGCACTGGACTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207482.2
CDS-3UTR CAA 90 bp AGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCTAGGTTGATTTCCTaGCCATCTGGCAGTGTGAAT +
Preference number: 5 (lower is better)
Translates to: RRPCSELVLIMPCSVWLRPRLIS*PSGSVN
Trigger: ATTCACACTGCCAGATGGCAAGGAAATCAACCTAGG...CCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS GCA 90 bp TTAGCTGTGTACAGGGCGGGGAAGTTGAAGGTTTCGAATAGGATCTaGACCATGATGGGTAGAAATGCTGTTTCCAGATCTAAGTGGCCT +
Preference number: 5 (lower is better)
Translates to: LAVYRAGKLKVSNRI*TMMGRNAVSRSKWP
Trigger: AGGCCACTTAGATCTGGAAACAGCATTTCTACCCATCATGGTGCAGATCCTATTCGAAACCTTCAACTTCCCCGCCCTGTACACAGCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207482.2
CDS-3UTR CAA 90 bp CCATCTGGCAGTGTGAATTTCTTCTGGAAGGATGGTGCTGAAGTTTTTGACATCCTGTTCAGGGGCAATTaGGAGGGAGTGGTAGAAGGA +
Preference number: 5 (lower is better)
Translates to: PSGSVNFFWKDGAEVFDILFRGN*EGVVEG
Trigger: TCCTTCTACCACTCCCTCCAAATTGCCCCTGAACAG...GATGTCAAAAACTTCAGCACCATCCTTCCAGAAGAAATTCACACTGCCAGATGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000208038.2
ENSMUST00000208153.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS-3UTR CAA 90 bp TCAGGAGAAAGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTAATCCAGGCACTATACTaGGCATATGGAGAGGCAGTT +
Preference number: 5 (lower is better)
Translates to: SGERRPCSELVLIMPCSVIQALY*AYGEAV
Trigger: AACTGCCTCTCCATATGCCAAGTATAGTGCCTGGAT...TACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCTTTCTCCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CAA 90 bp GAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGCCCAGCCTAGGCATGTCTAACACATTCCCATaGTCTGACAACAGTTTCATG +
Preference number: 5 (lower is better)
Translates to: ELVLIMPCSVWLRPSLGMSNTFP*SDNSFM
Trigger: CATGAAACTGTTGTCAGACAATGGGAATGTGTTAGA...CATGCCTAGGCTGGGCCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CAA 90 bp GCTAAGGCCCAGCCTAGGCATGATGATGTTGGCTCAGGTGATGGAACCCAAAATATGGTGCTGAAGTTTTaGACATCTCCATGTTGTAGT +
Preference number: 5 (lower is better)
Translates to: AKAQPRHDDVGSGDGTQNMVLKF*TSPCCS
Trigger: ACTACAACATGGAGATGTCAAAAACTTCAGCACCAT...ATTTTGGGTTCCATCACCTGAGCCAACATCATCATGCCTAGGCTGGGCCTTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS TCA 90 bp CCAGGGAGGAACAATGCTTGCTGGCTCATACTCAATCTAGTTTTCTaGGTCATTCTGGATTTAGCTTCCTTGCTCGTTAATGGTGCCTCT +
Preference number: 5 (lower is better)
Translates to: PGRNNACWLILNLVF*VILDLASLLVNGAS
Trigger: AGAGGCACCATTAACGAGCAAGGAAGCTAAATCCAGAATGACTCAGAAAACTAGATTGAGTATGAGCCAGCAAGCATTGTTCCTCCCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208038.2
CDS-3UTR CAA 90 bp AGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGTCTAACACATTCCCATaGTCTGACAACAGTTTCATG +
Preference number: 5 (lower is better)
Translates to: RRPCSELVLIMPCSVWLRSNTFP*SDNSFM
Trigger: CATGAAACTGTTGTCAGACAATGGGAATGTGTTAGA...CCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CAA 90 bp AGGAGGCCTTGCTCTGAGCTTGTTTTGATTATGCCCTGCTCAGTATGGCTAAGGATGGTGCTGAAGTTTTaGACATCTCCATGTTGTAGT +
Preference number: 5 (lower is better)
Translates to: RRPCSELVLIMPCSVWLRMVLKF*TSPCCS
Trigger: ACTACAACATGGAGATGTCAAAAACTTCAGCACCAT...CCTTAGCCATACTGAGCAGGGCATAATCAAAACAAGCTCAGAGCAAGGCCTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000152910.3
ENSMUST00000207630.2
CDS-3UTR CAA 90 bp TTGCCATCTGGCAGTGTGAATTTCTTCTGGAAGGATGGTGCTGAAGTTTTTGACAACCCCTCTAGCACATaGGTATGTTTCATTTTCCCG +
Preference number: 5 (lower is better)
Translates to: LPSGSVNFFWKDGAEVFDNPSST*VCFIFP
Trigger: CGGGAAAATGAAACATACCAATGTGCTAGAGGGGTT...GTCAAAAACTTCAGCACCATCCTTCCAGAAGAAATTCACACTGCCAGATGGCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000134455.3
ENSMUST00000207235.2
ENSMUST00000207482.2
ENSMUST00000208038.2
ENSMUST00000208153.2
ENSMUST00000208457.2
ENSMUST00000208761.2
CDS GCA 72 bp TGGCCTCTGAGATGTGCAGATCATGCCTTGGCCCTGTaGCTGAGTCATTCTGGATTTAGCTTCCTTGCTCGT +
Preference number: 6 (lower is better)
Translates to: WPLRCADHALAL*LSHSGFSFLAR
Trigger: ACGAGCAAGGAAGCTAAATCCAGAATGACTCAGGCACAGGGCCAAGGCATGATCTGCACATCTCAGAGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207482.2
ENSMUST00000207630.2
ENSMUST00000208761.2
CDS GCA 72 bp GAGCCACGCATCAGGGCAGGAACCAGGGAGGAACAATaGTTGCTGGCTCATACTCAATCTAGTTTTCTGAGT +
Preference number: 6 (lower is better)
Translates to: EPRIRAGTREEQ*LLAHTQSSFLS
Trigger: ACTCAGAAAACTAGATTGAGTATGAGCCAGCAAGCATTGTTCCTCCCTGGTTCCTGCCCTGATGCGTGGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208038.2
CDS CAA 72 bp AGATCTAAGTGGCCTCTGAGATGTGCAGATCATGCCTaGGCCCTGTGCCTGAGTCATTCTGGATTTAGCTTC +
Preference number: 6 (lower is better)
Translates to: RSKWPLRCADHA*ALCLSHSGFSF
Trigger: GAAGCTAAATCCAGAATGACTCAGGCACAGGGCCAAGGCATGATCTGCACATCTCAGAGGCCACTTAGATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000207482.2
ENSMUST00000207630.2
ENSMUST00000208761.2
CDS GCA 72 bp TACAGGGCGGGGAAGTTGAAGGTTTCGAATAGGATCTaGACCATGATGGGTAGAAATGCTGTTTCCAGATCT +
Preference number: 6 (lower is better)
Translates to: YRAGKLKVSNRI*TMMGRNAVSRS
Trigger: AGATCTGGAAACAGCATTTCTACCCATCATGGTGCAGATCCTATTCGAAACCTTCAACTTCCCCGCCCTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207482.2
CDS TCA 72 bp ATCCCATCTCCAGATTCAATAGCTGTTCCTGCACCATaGTGGGTAGAAATGCTGTTTCCAGATCTAAGTGGC +
Preference number: 6 (lower is better)
Translates to: IPSPDSIAVPAP*WVEMLFPDLSG
Trigger: GCCACTTAGATCTGGAAACAGCATTTCTACCCATCATGGTGCAGGAACAGCTATTGAATCTGGAGATGGGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207630.2
CDS GCA 72 bp GTAGGTCATCCCATCTCCAGATTCAATAGCTGTTCCTaGACCATGATGGGTAGAAATGCTGTTTCCAGATCT +
Preference number: 6 (lower is better)
Translates to: VGHPISRFNSCS*TMMGRNAVSRS
Trigger: AGATCTGGAAACAGCATTTCTACCCATCATGGTGCAGGAACAGCTATTGAATCTGGAGATGGGATGACCTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207630.2
CDS TCA 72 bp AACAATGCTTGCTGGCTCATACTCAATCTAGTTTTCTaGGTCATTCTGGATTTAGCTTCCTTGCTCGTTAAT +
Preference number: 6 (lower is better)
Translates to: NNACWLILNLVF*VILDLASLLVN
Trigger: ATTAACGAGCAAGGAAGCTAAATCCAGAATGACTCAGAAAACTAGATTGAGTATGAGCCAGCAAGCATTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208038.2