Pregenerated sensors for ACTC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068614

Ensembl transcript IDs: ENSMUST00000090269.7

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	CTGATGAGAGATGGGGAGGGGGCTCAGAGGATTCCAAGAAGCACAATACGGTCAGTCCCATACCCACCATaGCACCCTGGTGACGTGGGC	+
Preference number: 4 (lower is better) Translates to: LMRDGEGAQRIPRSTIRSVPYPP*HPGDVG Trigger: GCCCACGTCACCAGGGTGTCATGGTGGGTATGGGAC...TGACCGTATTGTGCTTCTTGGAATCCTCTGAGCCCCCTCCCCATCTCTCATCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090269.7
CDS-3UTR CCA 90 bp	CTGATGAGAGATGGGGAGGGGGCTCAGAGGATTCCAAGAAGCACAATACGGTCACACACACCAAAGCGGTaGTCTCCTCGTCGTCACACA	+
Preference number: 4 (lower is better) Translates to: LMRDGEGAQRIPRSTIRSHTPKR*SPRRHT Trigger: TGTGTGACGACGAGGAGACCACCGCTTTGGTGTGTG...TGACCGTATTGTGCTTCTTGGAATCCTCTGAGCCCCCTCCCCATCTCTCATCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090269.7
CDS-3UTR TCA 90 bp	CTGATGAGAGATGGGGAGGGGGCTCAGAGGATTCCAAGAAGCACAATACGGTCACAGATTCCATACCAATaGAAGAGGGCTGGAAGAGAG	+
Preference number: 4 (lower is better) Translates to: LMRDGEGAQRIPRSTIRSQIPYQ*KRAGRE Trigger: CTCTCTTCCAGCCCTCTTTCATTGGTATGGAATCTG...TGACCGTATTGTGCTTCTTGGAATCCTCTGAGCCCCCTCCCCATCTCTCATCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090269.7
CDS-3UTR CCA 90 bp	TGTACAATGACTGATGAGAGATGGGGAGGGGGCTCAGAGGATTCCAAGAAGCACCCAATGAAAGAGGGCTaGAAGAGAGTCTCTGGACAG	+
Preference number: 4 (lower is better) Translates to: CTMTDERWGGGSEDSKKHPMKEG*KRVSGQ Trigger: CTGTCCAGAGACTCTCTTCCAGCCCTCTTTCATTGG...GTGCTTCTTGGAATCCTCTGAGCCCCCTCCCCATCTCTCATCAGTCATTGTACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090269.7
CDS-3UTR GCA 90 bp	CTGATGAGAGATGGGGAGGGGGCTCAGAGGATTCCAAGAAGCACAATACGGTCAGCAGTGATTTCCTTTTaGATACGATCGGCAATACCA	+
Preference number: 4 (lower is better) Translates to: LMRDGEGAQRIPRSTIRSAVISF*IRSAIP Trigger: TGGTATTGCCGATCGTATGCAAAAGGAAATCACTGC...TGACCGTATTGTGCTTCTTGGAATCCTCTGAGCCCCCTCCCCATCTCTCATCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000090269.7
CDS-3UTR GCA 90 bp	GGAGGGGGCTCAGAGGATTCCAAGAAGCACAATACGGTCATCCTGAATATAAGGCAGAATCCAGAACAATaGCTGTGGTTCTTCCAGAAG	+
Preference number: 4 (lower is better) Translates to: GGGSEDSKKHNTVILNIRQNPEQ*LWFFQK Trigger: CTTCTGGAAGAACCACAGGCATTGTTCTGGATTCTG...CCTTATATTCAGGATGACCGTATTGTGCTTCTTGGAATCCTCTGAGCCCCCTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090269.7
CDS-3UTR CCA 90 bp	GGGAGGGGGCTCAGAGGATTCCAAGAAGCACAATACGGTCATCCTGAATATAAGAGGAAGATGCAGCTGTaGCCATCTCGTTCTCAAAAT	+
Preference number: 4 (lower is better) Translates to: GRGLRGFQEAQYGHPEYKRKMQL*PSRSQN Trigger: ATTTTGAGAACGAGATGGCCACAGCTGCATCTTCCT...CTTATATTCAGGATGACCGTATTGTGCTTCTTGGAATCCTCTGAGCCCCCTCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090269.7
CDS-3UTR CAA 90 bp	GGAGGGGGCTCAGAGGATTCCAAGAAGCACAATACGGTCATCCTGAATATAAGGACCAGCCCGGAGCCATaGTCACACACCAAAGCGGTG	+
Preference number: 5 (lower is better) Translates to: GGGSEDSKKHNTVILNIRTSPEP*SHTKAV Trigger: CACCGCTTTGGTGTGTGACAATGGCTCCGGGCTGGT...CCTTATATTCAGGATGACCGTATTGTGCTTCTTGGAATCCTCTGAGCCCCCTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090269.7
CDS-3UTR CAA 90 bp	GGGAGGGGGCTCAGAGGATTCCAAGAAGCACAATACGGTCATCCTGAATATAAGTGCAGTGATTTCCTTTaGCATACGATCGGCAATACC	+
Preference number: 5 (lower is better) Translates to: GRGLRGFQEAQYGHPEYKCSDFL*HTIGNT Trigger: GGTATTGCCGATCGTATGCAAAAGGAAATCACTGCA...CTTATATTCAGGATGACCGTATTGTGCTTCTTGGAATCCTCTGAGCCCCCTCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090269.7