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Pregenerated sensors for ACTA2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035783

Ensembl transcript IDs: ENSMUST00000039631.10

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp CCTTCCTCTGTTGAAGTGATTGATGCCATCCATGCCTGGGAATATACTTTTCTAAGCTTTGGGCAGGAATaGTTTGGAAAGGAACTGGAG +
Preference number: 2 (lower is better)
Translates to: PSSVEVIDAIHAWEYTFLSFGQE*FGKELE
Trigger: CTCCAGTTCCTTTCCAAATCATTCCTGCCCAAAGCT...TAGAAAAGTATATTCCCAGGCATGGATGGCATCAATCACTTCAACAGAGGAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10
3UTR-3UTR CCA 90 bp CGTTTACATCATTTAAGTGGACCTTCCTCTGTTGAAGTGATTGATGCCATCCATAACAAATCAAAGCTTTaGGCAGGAATGATTTGGAAA +
Preference number: 2 (lower is better)
Translates to: RLHHLSGPSSVEVIDAIHNKSKL*AGMIWK
Trigger: TTTCCAAATCATTCCTGCCCAAAGCTTTGATTTGTT...ATGGATGGCATCAATCACTTCAACAGAGGAAGGTCCACTTAAATGATGTAAACG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10
3UTR TCA 72 bp TTGGGCAGGAATGATTTGGAAAGGAACTGGAGGCGCTaGTCCACAAAACGTTCACAGTTGTGTGCTAGAGGC +
Preference number: 3 (lower is better)
Translates to: LGRNDLERNWRR*STKRSQLCARG
Trigger: GCCTCTAGCACACAACTGTGAACGTTTTGTGGATCAGCGCCTCCAGTTCCTTTCCAAATCATTCCTGCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10
3UTR-3UTR CAA 90 bp TGGGAATATACTTTTCTAGTTGTGTCACATCTATTCCTGACCACTAGAGGGGGCTTGGGCAGGAATGATTaGGAAAGGAACTGGAGGCGC +
Preference number: 3 (lower is better)
Translates to: WEYTFLVVSHLFLTTRGGLGRND*ERNWRR
Trigger: GCGCCTCCAGTTCCTTTCCAAATCATTCCTGCCCAA...GCCCCCTCTAGTGGTCAGGAATAGATGTGACACAACTAGAAAAGTATATTCCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10
3UTR TCA 72 bp AAACCACGAGTAACAAATCAAAGCTTTGGGCAGGAATaGTTTGGAAAGGAACTGGAGGCGCTGATCCACAAA +
Preference number: 3 (lower is better)
Translates to: KPRVTNQSFGQE*FGKELEALIHK
Trigger: TTTGTGGATCAGCGCCTCCAGTTCCTTTCCAAATCATTCCTGCCCAAAGCTTTGATTTGTTACTCGTGGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10
3UTR CCA 72 bp ACGAGTAACAAATCAAAGCTTTGGGCAGGAATGATTTaGAAAGGAACTGGAGGCGCTGATCCACAAAACGTT +
Preference number: 3 (lower is better)
Translates to: TSNKSKLWAGMI*KGTGGADPQNV
Trigger: AACGTTTTGTGGATCAGCGCCTCCAGTTCCTTTCCAAATCATTCCTGCCCAAAGCTTTGATTTGTTACTCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10
3UTR CCA 72 bp CCTTCCTCTGTTGAAGTGATTGATGCCATCCATGCCTaGGAATATACTTTTCTAGTTGTGTCACATCTATTC +
Preference number: 3 (lower is better)
Translates to: PSSVEVIDAIHA*EYTFLVVSHLF
Trigger: GAATAGATGTGACACAACTAGAAAAGTATATTCCCAGGCATGGATGGCATCAATCACTTCAACAGAGGAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10
CDS-3UTR GCA 90 bp AAAGGAACTGGAGGCGCTGATCCACAAAACGTTCACAGTTGTGTGCTAGAGGCATCAGGATCCCTCTCTTaGTCTGGGCTTCATCCCCCA +
Preference number: 4 (lower is better)
Translates to: KGTGGADPQNVHSCVLEASGSLS*SGLHPP
Trigger: TGGGGGATGAAGCCCAGAGCAAGAGAGGGATCCTGA...TGCCTCTAGCACACAACTGTGAACGTTTTGTGGATCAGCGCCTCCAGTTCCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10
CDS-3UTR TCA 90 bp TCAAAGCTTTGGGCAGGAATGATTTGGAAAGGAACTGGAGGCGCTGATCCACAAGTTCGTTTCCAATGGTaGTCACCTGCCCGTCAGGCA +
Preference number: 4 (lower is better)
Translates to: SKLWAGMIWKGTGGADPQVRFQW*SPARQA
Trigger: TGCCTGACGGGCAGGTGATCACCATTGGAAACGAAC...TTGTGGATCAGCGCCTCCAGTTCCTTTCCAAATCATTCCTGCCCAAAGCTTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10
CDS-3UTR CCA 90 bp CTTTGGGCAGGAATGATTTGGAAAGGAACTGGAGGCGCTGATCCACAAAACGTTGGCCTTAGGGTTCAGTaGTGCCTCTGTCAGCAGTGT +
Preference number: 4 (lower is better)
Translates to: LWAGMIWKGTGGADPQNVGLRVQ*CLCQQC
Trigger: ACACTGCTGACAGAGGCACCACTGAACCCTAAGGCC...AACGTTTTGTGGATCAGCGCCTCCAGTTCCTTTCCAAATCATTCCTGCCCAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10
CDS-3UTR TCA 90 bp TCAAAGCTTTGGGCAGGAATGATTTGGAAAGGAACTGGAGGCGCTGATCCACAACATGGTGGTACCCCCTaGCAGGACGTTGTTAGCATA +
Preference number: 4 (lower is better)
Translates to: SKLWAGMIWKGTGGADPQHGGTP*QDVVSI
Trigger: TATGCTAACAACGTCCTGTCAGGGGGTACCACCATG...TTGTGGATCAGCGCCTCCAGTTCCTTTCCAAATCATTCCTGCCCAAAGCTTTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10
CDS-3UTR GCA 90 bp ACGAGTAACAAATCAAAGCTTTGGGCAGGAATGATTTGGAAAGGAACTGGAGGCAGGTGGTTTCGTGGATaGCCGCTGACTCCATCCCAA +
Preference number: 4 (lower is better)
Translates to: TSNKSKLWAGMIWKGTGGRWFRG*PLTPSQ
Trigger: TTGGGATGGAGTCAGCGGGCATCCACGAAACCACCT...GCCTCCAGTTCCTTTCCAAATCATTCCTGCCCAAAGCTTTGATTTGTTACTCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10
CDS-3UTR GCA 90 bp CCTTCCTCTGTTGAAGTGATTGATGCCATCCATGCCTGGGAATATACTTTTCTACTTAGGGTTCAGTGGTaGCTCTGTCAGCAGTGTCGG +
Preference number: 4 (lower is better)
Translates to: PSSVEVIDAIHAWEYTFLLRVQW*LCQQCR
Trigger: CCGACACTGCTGACAGAGGCACCACTGAACCCTAAG...TAGAAAAGTATATTCCCAGGCATGGATGGCATCAATCACTTCAACAGAGGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10
CDS-3UTR CCA 90 bp TGGGAATATACTTTTCTAGTTGTGTCACATCTATTCCTGACCACTAGAGGGGGCTTACTCCCTGATGTCTaGGACGTCCCACGATGGATG +
Preference number: 4 (lower is better)
Translates to: WEYTFLVVSHLFLTTRGGLLPDV*DVPRWM
Trigger: CATCCATCGTGGGACGTCCCAGACATCAGGGAGTAA...GCCCCCTCTAGTGGTCAGGAATAGATGTGACACAACTAGAAAAGTATATTCCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10
CDS-3UTR CCA 90 bp TCAAAGCTTTGGGCAGGAATGATTTGGAAAGGAACTGGAGGCGCTGATCCACAACATCCCAATGAAAGATaGCTGGAAGAGAGTCTCTGG +
Preference number: 4 (lower is better)
Translates to: SKLWAGMIWKGTGGADPQHPNER*LEESLW
Trigger: CCAGAGACTCTCTTCCAGCCATCTTTCATTGGGATG...TTGTGGATCAGCGCCTCCAGTTCCTTTCCAAATCATTCCTGCCCAAAGCTTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10
CDS-3UTR CCA 90 bp CCTTCCTCTGTTGAAGTGATTGATGCCATCCATGCCTGGGAATATACTTTTCTAATGGGAAAACAGCCCTaGGAGCATCATCACCAGCGA +
Preference number: 4 (lower is better)
Translates to: PSSVEVIDAIHAWEYTFLMGKQP*EHHHQR
Trigger: TCGCTGGTGATGATGCTCCCAGGGCTGTTTTCCCAT...TAGAAAAGTATATTCCCAGGCATGGATGGCATCAATCACTTCAACAGAGGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10
CDS-3UTR TCA 90 bp CGTTTACATCATTTAAGTGGACCTTCCTCTGTTGAAGTGATTGATGCCATCCATCTGACTCCATCCCAATaGAAGATGGCTGGAAGAGAG +
Preference number: 4 (lower is better)
Translates to: RLHHLSGPSSVEVIDAIHLTPSQ*KMAGRE
Trigger: CTCTCTTCCAGCCATCTTTCATTGGGATGGAGTCAG...ATGGATGGCATCAATCACTTCAACAGAGGAAGGTCCACTTAAATGATGTAAACG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10
CDS-3UTR TCA 90 bp TCAAAGCTTTGGGCAGGAATGATTTGGAAAGGAACTGGAGGCGCTGATCCACAACATAGAGATCCTTCCTaGTGTCAATATCACACTTCA +
Preference number: 4 (lower is better)
Translates to: SKLWAGMIWKGTGGADPQHRDPS*CQYHTS
Trigger: TGAAGTGTGATATTGACATCAGGAAGGATCTCTATG...TTGTGGATCAGCGCCTCCAGTTCCTTTCCAAATCATTCCTGCCCAAAGCTTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10
CDS-3UTR CAA 90 bp TCAAAGCTTTGGGCAGGAATGATTTGGAAAGGAACTGGAGGCGCTGATCCACAAGTCAGGATCCCTCTCTaGCTCTGGGCTTCATCCCCC +
Preference number: 5 (lower is better)
Translates to: SKLWAGMIWKGTGGADPQVRIPL*LWASSP
Trigger: GGGGGATGAAGCCCAGAGCAAGAGAGGGATCCTGAC...TTGTGGATCAGCGCCTCCAGTTCCTTTCCAAATCATTCCTGCCCAAAGCTTTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10
CDS-3UTR CAA 90 bp AAAACCACGAGTAACAAATCAAAGCTTTGGGCAGGAATGATTTGGAAAGGAACTATCCAGACAGAGTACTaGCGTTCTGGAGGGGCAATG +
Preference number: 5 (lower is better)
Translates to: KTTSNKSKLWAGMIWKGTIQTEY*RSGGAM
Trigger: CATTGCCCCTCCAGAACGCAAGTACTCTGTCTGGAT...AGTTCCTTTCCAAATCATTCCTGCCCAAAGCTTTGATTTGTTACTCGTGGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039631.10