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Pregenerated sensors for ACTA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031972

Ensembl transcript IDs: ENSMUST00000034453.6

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCTGCAGTGGCGGCGATGGAGCCACGGCGGAGGACGGGGCCACCCTaGAACCACAGCACGATTGTCGATTGTCGTCCTGAGGAGAGAGAG +
Preference number: 1 (lower is better)
Translates to: AAVAAMEPRRRTGPP*NHSTIVDCRPEERE
Trigger: CTCTCTCTCCTCAGGACGACAATCGACAATCGTGCTGTGGTTGCAGGGTGGCCCCGTCCTCCGCCGTGGCTCCATCGCCGCCACTGCAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034453.6
3UTR CCA 90 bp ATCTATGTACACGTCAAAAACAGGCGCCGGCTGCAGTGGCGGCGATaGAGCCACGGCGGAGGACGGGGCCACCCTGCAACCACAGCACGA +
Preference number: 1 (lower is better)
Translates to: IYVHVKNRRRLQWRR*SHGGGRGHPATTAR
Trigger: TCGTGCTGTGGTTGCAGGGTGGCCCCGTCCTCCGCCGTGGCTCCATCGCCGCCACTGCAGCCGGCGCCTGTTTTTGACGTGTACATAGAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034453.6
3UTR GCA 72 bp GCGGCGATGGAGCCACGGCGGAGGACGGGGCCACCCTaGAACCACAGCACGATTGTCGATTGTCGTCCTGAG +
Preference number: 3 (lower is better)
Translates to: AAMEPRRRTGPP*NHSTIVDCRPE
Trigger: CTCAGGACGACAATCGACAATCGTGCTGTGGTTGCAGGGTGGCCCCGTCCTCCGCCGTGGCTCCATCGCCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034453.6
3UTR GCA 72 bp AGTCAATCTATGTACACGTCAAAAACAGGCGCCGGCTaGAGTGGCGGCGATGGAGCCACGGCGGAGGACGGG +
Preference number: 3 (lower is better)
Translates to: SQSMYTSKTGAG*SGGDGATAEDG
Trigger: CCCGTCCTCCGCCGTGGCTCCATCGCCGCCACTGCAGCCGGCGCCTGTTTTTGACGTGTACATAGATTGACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034453.6
CDS-3UTR GCA 90 bp CGGCGATGGAGCCACGGCGGAGGACGGGGCCACCCTGCAACCACAGCACGATTGGTGAGCAGAGTCGGGTaGTCCTCAGGGGCCACACGC +
Preference number: 4 (lower is better)
Translates to: RRWSHGGGRGHPATTARLVSRVG*SSGATR
Trigger: GCGTGTGGCCCCTGAGGAGCACCCGACTCTGCTCAC...CAATCGTGCTGTGGTTGCAGGGTGGCCCCGTCCTCCGCCGTGGCTCCATCGCCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034453.6
CDS-3UTR CCA 90 bp CGGCGATGGAGCCACGGCGGAGGACGGGGCCACCCTGCAACCACAGCACGATTGCACACACAAGAGCGGTaGTCTCGTCTTCGTCGCACA +
Preference number: 4 (lower is better)
Translates to: RRWSHGGGRGHPATTARLHTQER*SRLRRT
Trigger: TGTGCGACGAAGACGAGACCACCGCTCTTGTGTGTG...CAATCGTGCTGTGGTTGCAGGGTGGCCCCGTCCTCCGCCGTGGCTCCATCGCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034453.6
CDS-3UTR GCA 90 bp TGGAGCCACGGCGGAGGACGGGGCCACCCTGCAACCACAGCACGATTGTCGATTCAGAATCCAACACGATaGCGGTGGTACGGCCGGAAG +
Preference number: 4 (lower is better)
Translates to: WSHGGGRGHPATTARLSIQNPTR*RWYGRK
Trigger: CTTCCGGCCGTACCACCGGCATCGTGTTGGATTCTG...AATCGACAATCGTGCTGTGGTTGCAGGGTGGCCCCGTCCTCCGCCGTGGCTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034453.6
CDS-3UTR CCA 90 bp GGTAAAACGAGTCAATCTATGTACACGTCAAAAACAGGCGCCGGCTGCAGTGGCTCTCACGTTCAGCTGTaGTCACGAAGGAATAGCCAC +
Preference number: 4 (lower is better)
Translates to: GKTSQSMYTSKTGAGCSGSHVQL*SRRNSH
Trigger: GTGGCTATTCCTTCGTGACCACAGCTGAACGTGAGA...GCCACTGCAGCCGGCGCCTGTTTTTGACGTGTACATAGATTGACTCGTTTTACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034453.6
CDS-3UTR TCA 90 bp AATGAGGTAAAACGAGTCAATCTATGTACACGTCAAAAACAGGCGCCGGCTGCATGGTGCCCCCTGACATaGCGTTGTTGGCATACAGGT +
Preference number: 4 (lower is better)
Translates to: NEVKRVNLCTRQKQAPAAWCPLT*RCWHTG
Trigger: ACCTGTATGCCAACAACGTCATGTCAGGGGGCACCA...TGCAGCCGGCGCCTGTTTTTGACGTGTACATAGATTGACTCGTTTTACCTCATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000034453.6
CDS-3UTR CAA 90 bp CGGCGATGGAGCCACGGCGGAGGACGGGGCCACCCTGCAACCACAGCACGATTGACCAGGCCAGAGCCGTaGTCACACACAAGAGCGGTG +
Preference number: 5 (lower is better)
Translates to: RRWSHGGGRGHPATTARLTRPEP*SHTRAV
Trigger: CACCGCTCTTGTGTGTGACAACGGCTCTGGCCTGGT...CAATCGTGCTGTGGTTGCAGGGTGGCCCCGTCCTCCGCCGTGGCTCCATCGCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034453.6