RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ACSM5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030972

Ensembl transcript IDs: ENSMUST00000066465.3, ENSMUST00000207307.2, ENSMUST00000207381.2, ENSMUST00000207387.2, ENSMUST00000207440.2, ENSMUST00000207796.2, ENSMUST00000207813.2

Found 184 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp GAAGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGACTCCAAGGAGGAGCTaGCCTGCCCCACTTCCTTCT +
Preference number: 2 (lower is better)
Translates to: EGIVLQGGAGLPHFLLLQTPRRS*PAPLPS
Trigger: AGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGT...CTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207381.2
ENSMUST00000207440.2
3UTR-3UTR CCA 90 bp AGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGAACAGCCGGAAGAGGGTTaGGACACAGCACAGGGTGGT +
Preference number: 2 (lower is better)
Translates to: RDSTPRRSWPAPLPSPSEQPEEG*DTAQGG
Trigger: ACCACCCTGTGCTGTGTCCCAACCCTCTTCCGGCTG...TTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207307.2
3UTR-3UTR GCA 90 bp AGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGAAAAGGAGGAGCTGGCCTaGCCCACTTCCTTCTCCTTC +
Preference number: 2 (lower is better)
Translates to: RDSTPRRSWPAPLPSPSEKEELA*PTSFSF
Trigger: GAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTT...TTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207381.2
ENSMUST00000207440.2
3UTR-3UTR CCA 90 bp AGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGAAACTCCAAGGAGGAGCTaGCCTGCCCCACTTCCTTCT +
Preference number: 2 (lower is better)
Translates to: RDSTPRRSWPAPLPSPSETPRRS*PAPLPS
Trigger: AGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGT...TTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207381.2
ENSMUST00000207440.2
3UTR-3UTR GCA 90 bp ATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGAACCTTAAGGAGGAGCTGGCCTaGCCCACTTCCTTCTCCTTC +
Preference number: 2 (lower is better)
Translates to: IVLQGGAGLPHFLLLQNLKEELA*PTSFSF
Trigger: GAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTT...AAGGTTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207381.2
ENSMUST00000207440.2
3UTR-3UTR CCA 90 bp ATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGAACCTTACTCCAAGGAGGAGCTaGCCTGCCCCACTTCCTTCT +
Preference number: 2 (lower is better)
Translates to: IVLQGGAGLPHFLLLQNLTPRRS*PAPLPS
Trigger: AGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGT...AAGGTTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207381.2
ENSMUST00000207440.2
3UTR-3UTR TCA 90 bp CTTATGTTCCCCCTCCCCAACCCAGGACGTAGGCTATACCTAAGTTCTTCAATACCCTCACATCAGGGTTaGGGGCCTCTCCACCCGTCA +
Preference number: 2 (lower is better)
Translates to: LMFPLPNPGRRLYLSSSIPSHQG*GPLHPS
Trigger: TGACGGGTGGAGAGGCCCTCAACCCTGATGTGAGGG...TATTGAAGAACTTAGGTATAGCCTACGTCCTGGGTTGGGGAGGGGGAACATAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000207307.2
3UTR-3UTR TCA 90 bp AGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGAAAAAGTCTCCTTGCTCTaGTGCTGCTGTCTTCTCGGG +
Preference number: 2 (lower is better)
Translates to: RDSTPRRSWPAPLPSPSEKVSLL*CCCLLG
Trigger: CCCGAGAAGACAGCAGCATCAGAGCAAGGAGACTTT...TTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000207307.2
ENSMUST00000207381.2
3UTR-3UTR CCA 90 bp TTTGCTGGACTGGGCAGTGTATGTGAGCTCTGGACCAGGGATGCTCTTACATTTACTCCAAGGAGGAGCTaGCCTGCCCCACTTCCTTCT +
Preference number: 2 (lower is better)
Translates to: FAGLGSVCELWTRDALTFTPRRS*PAPLPS
Trigger: AGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGT...AAATGTAAGAGCATCCCTGGTCCAGAGCTCACATACACTGCCCAGTCCAGCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
3UTR-3UTR GCA 90 bp CTTATGTTCCCCCTCCCCAACCCAGGACGTAGGCTATACCTAAGTTCTTCAATAAAGGAGGAGCTGGCCTaGCCCACTTCCTTCTCCTTC +
Preference number: 2 (lower is better)
Translates to: LMFPLPNPGRRLYLSSSIKEELA*PTSFSF
Trigger: GAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTT...TATTGAAGAACTTAGGTATAGCCTACGTCCTGGGTTGGGGAGGGGGAACATAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
3UTR-3UTR TCA 90 bp GTCTCCAGTGTTTCCTCACAGCAGCTTCCCAGTGTAGCTTATGTTCCCCCTCCCCCCAAAATGCCCATTTaGAAGCTGACCATCTTTGAT +
Preference number: 2 (lower is better)
Translates to: VSSVSSQQLPSVAYVPPPPKMPI*KLTIFD
Trigger: ATCAAAGATGGTCAGCTTTCAAATGGGCATTTTGGG...GGGAGGGGGAACATAAGCTACACTGGGAAGCTGCTGTGAGGAAACACTGGAGAC
50% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
3UTR-3UTR TCA 90 bp TGTGCCGATTTGTCTGTCCCAGGAAAACAGAGTTCTCTTGGTAAAAGCAATGCTACTGGGCAGTGTATGTaGGCTCTGGACCAGGGATGC +
Preference number: 2 (lower is better)
Translates to: CADLSVPGKQSSLGKSNATGQCM*ALDQGC
Trigger: GCATCCCTGGTCCAGAGCTCACATACACTGCCCAGT...AGCATTGCTTTTACCAAGAGAACTCTGTTTTCCTGGGACAGACAAATCGGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
3UTR-3UTR TCA 90 bp AGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGAACTAAATGGAAGGGTATaGCAGTCAATGTTATGTCCC +
Preference number: 2 (lower is better)
Translates to: RDSTPRRSWPAPLPSPSELNGRV*QSMLCP
Trigger: GGGACATAACATTGACTGTCATACCCTTCCATTTAG...TTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
3UTR-3UTR CCA 90 bp ATGTTCCCCCTCCCCAACCCAGGACGTAGGCTATACCTAAGTTCTTCAATAGTTGGGCATTTGCTGGACTaGGCAGTGTATGTGAGCTCT +
Preference number: 2 (lower is better)
Translates to: MFPLPNPGRRLYLSSSIVGHLLD*AVYVSS
Trigger: AGAGCTCACATACACTGCCCAGTCCAGCAAATGCCC...AACTATTGAAGAACTTAGGTATAGCCTACGTCCTGGGTTGGGGAGGGGGAACAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
3UTR-3UTR TCA 90 bp TTGGCTAGGCTGGCTAGCCAGCAAGCTCTCGGGATCTTCTTGTCTTCCTCTCCCAAAGCTGACCATCTTTaGTATCTATTCTTTGAAGGG +
Preference number: 2 (lower is better)
Translates to: LARLASQQALGIFLSSSPKADHL*YLFFEG
Trigger: CCCTTCAAAGAATAGATATCAAAGATGGTCAGCTTT...GGGAGAGGAAGACAAGAAGATCCCGAGAGCTTGCTGGCTAGCCAGCCTAGCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066465.3
3UTR-3UTR TCA 90 bp ATAGCTATCAGGGATCTGAACATTGGTTGTTCATGCATTACCCAGGAGGTACTTACTGGGCAGTGTATGTaGGCTCTGGACCAGGGATGC +
Preference number: 2 (lower is better)
Translates to: IAIRDLNIGCSCITQEVLTGQCM*ALDQGC
Trigger: GCATCCCTGGTCCAGAGCTCACATACACTGCCCAGT...AAGTACCTCCTGGGTAATGCATGAACAACCAATGTTCAGATCCCTGATAGCTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066465.3
3UTR-3UTR CCA 90 bp GACTTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGATGGGACACAGCACAGGGTaGTTATTGGGAACCTGCAGA +
Preference number: 2 (lower is better)
Translates to: DFIQRVTFIPTGIMRPRMGHSTG*LLGTCR
Trigger: TCTGCAGGTTCCCAATAACCACCCTGTGCTGTGTCC...CATCCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207307.2
3UTR-3UTR CCA 90 bp ATGTTCCCCCTCCCCAACCCAGGACGTAGGCTATACCTAAGTTCTTCAATAGTTGCACAGGGTGGTTATTaGGAACCTGCAGAGAGTATT +
Preference number: 2 (lower is better)
Translates to: MFPLPNPGRRLYLSSSIVAQGGY*EPAESI
Trigger: AATACTCTCTGCAGGTTCCCAATAACCACCCTGTGC...AACTATTGAAGAACTTAGGTATAGCCTACGTCCTGGGTTGGGGAGGGGGAACAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000207307.2
3UTR-3UTR GCA 90 bp GTGCATCGCAGCATCTCTCTTGGGTTGCATTTCATCTCCCCCACTCTTGGTTTCATGTTATGTCCCAGATaGTGTTGCCAAATGACTTCA +
Preference number: 2 (lower is better)
Translates to: VHRSISLGLHFISPTLGFMLCPR*CCQMTS
Trigger: TGAAGTCATTTGGCAACAGCATCTGGGACATAACAT...GAAACCAAGAGTGGGGGAGATGAAATGCAACCCAAGAGAGATGCTGCGATGCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207307.2
3UTR-3UTR CCA 90 bp CCCAACCCAGGACGTAGGCTATACCTAAGTTCTTCAATAGTTACATTGTTGATTGTCTTCACATGCTCCTaGAGTTCCCTGGTCAGGGCT +
Preference number: 2 (lower is better)
Translates to: PNPGRRLYLSSSIVTLLIVFTCS*SSLVRA
Trigger: AGCCCTGACCAGGGAACTCCAGGAGCATGTGAAGAC...AATCAACAATGTAACTATTGAAGAACTTAGGTATAGCCTACGTCCTGGGTTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207307.2
3UTR-3UTR TCA 90 bp TTCAGTGCATCGCAGCATCTCTCTTGGGTTGCATTTCATCTCCCCCACTCTTGGTTGATATCTATTCTTTaGAGGGATAGTACTCCAAGG +
Preference number: 2 (lower is better)
Translates to: FSASQHLSWVAFHLPHSWLISIL*RDSTPR
Trigger: CCTTGGAGTACTATCCCTTCAAAGAATAGATATCAA...CCAAGAGTGGGGGAGATGAAATGCAACCCAAGAGAGATGCTGCGATGCACTGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000207307.2
ENSMUST00000207381.2
3UTR-3UTR TCA 90 bp GTGCATCGCAGCATCTCTCTTGGGTTGCATTTCATCTCCCCCACTCTTGGTTTCTTGATATCTATTCTTTaGAGGGATAGTACTCCAAGG +
Preference number: 2 (lower is better)
Translates to: VHRSISLGLHFISPTLGFLISIL*RDSTPR
Trigger: CCTTGGAGTACTATCCCTTCAAAGAATAGATATCAA...GAAACCAAGAGTGGGGGAGATGAAATGCAACCCAAGAGAGATGCTGCGATGCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000207307.2
ENSMUST00000207381.2
3UTR-3UTR TCA 90 bp GTGCATCGCAGCATCTCTCTTGGGTTGCATTTCATCTCCCCCACTCTTGGTTTCAAAGCTGACCATCTTTaGTATCTATTCTTTGAAGGG +
Preference number: 2 (lower is better)
Translates to: VHRSISLGLHFISPTLGFKADHL*YLFFEG
Trigger: CCCTTCAAAGAATAGATATCAAAGATGGTCAGCTTT...GAAACCAAGAGTGGGGGAGATGAAATGCAACCCAAGAGAGATGCTGCGATGCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000207307.2
ENSMUST00000207381.2
3UTR-3UTR TCA 90 bp ATGTTCCCCCTCCCCAACCCAGGACGTAGGCTATACCTAAGTTCTTCAATAGTTCCCAAAATGCCCATTTaGAAGCTGACCATCTTTGAT +
Preference number: 2 (lower is better)
Translates to: MFPLPNPGRRLYLSSSIVPKMPI*KLTIFD
Trigger: ATCAAAGATGGTCAGCTTTCAAATGGGCATTTTGGG...AACTATTGAAGAACTTAGGTATAGCCTACGTCCTGGGTTGGGGAGGGGGAACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
3UTR-3UTR GCA 90 bp CTTATGTTCCCCCTCCCCAACCCAGGACGTAGGCTATACCTAAGTTCTTCAATATGTCCCAGATGCTGTTaGCAAATGACTTCATCCAAA +
Preference number: 2 (lower is better)
Translates to: LMFPLPNPGRRLYLSSSICPRCC*QMTSSK
Trigger: TTTGGATGAAGTCATTTGGCAACAGCATCTGGGACA...TATTGAAGAACTTAGGTATAGCCTACGTCCTGGGTTGGGGAGGGGGAACATAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
3UTR-3UTR CCA 90 bp CTTATGTTCCCCCTCCCCAACCCAGGACGTAGGCTATACCTAAGTTCTTCAATACACATTCATTCCCACTaGCATAATGAGACCAAGGAT +
Preference number: 2 (lower is better)
Translates to: LMFPLPNPGRRLYLSSSIHIHSH*HNETKD
Trigger: ATCCTTGGTCTCATTATGCCAGTGGGAATGAATGTG...TATTGAAGAACTTAGGTATAGCCTACGTCCTGGGTTGGGGAGGGGGAACATAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
3UTR CAA 90 bp TCTAAATGGAAGGGTATGACAGTCAATGTTATGTCCCAGATGCTGTaGCCAAATGACTTCATCCAAAGGGTCACATTCATTCCCACTGGC +
Preference number: 2 (lower is better)
Translates to: SKWKGMTVNVMSQML*PNDFIQRVTFIPTG
Trigger: GCCAGTGGGAATGAATGTGACCCTTTGGATGAAGTCATTTGGCAACAGCATCTGGGACATAACATTGACTGTCATACCCTTCCATTTAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
3UTR-3UTR GCA 90 bp TTCTTTATAGTGAGTCCCAAAAGTGTGTCTAAATGGAAGGGTATGACAGTCAATGAAGAGGGTCCAGGCTaGTTTCACCCATCCAGTGTC +
Preference number: 2 (lower is better)
Translates to: FFIVSPKSVSKWKGMTVNEEGPG*FHPSSV
Trigger: GACACTGGATGGGTGAAAGCAGCCTGGACCCTCTTC...ATTGACTGTCATACCCTTCCATTTAGACACACTTTTGGGACTCACTATAAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207307.2
3UTR-3UTR CCA 90 bp GTGCATCGCAGCATCTCTCTTGGGTTGCATTTCATCTCCCCCACTCTTGGTTTCAAAAGTGTGTCTAAATaGAAGGGTATGACAGTCAAT +
Preference number: 2 (lower is better)
Translates to: VHRSISLGLHFISPTLGFKSVSK*KGMTVN
Trigger: ATTGACTGTCATACCCTTCCATTTAGACACACTTTT...GAAACCAAGAGTGGGGGAGATGAAATGCAACCCAAGAGAGATGCTGCGATGCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000207307.2
3UTR-3UTR TCA 90 bp AATGACTTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGCCCAAAATGCCCATTTaGAAGCTGACCATCTTTGAT +
Preference number: 2 (lower is better)
Translates to: NDFIQRVTFIPTGIMRPRPKMPI*KLTIFD
Trigger: ATCAAAGATGGTCAGCTTTCAAATGGGCATTTTGGG...CCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAAGTCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
3UTR-3UTR TCA 90 bp TTAAGAAAACCTGGGAGATGGCAAGTGTCTAACATCATGTCTCCAGTGTTTCCTTTGATATCTATTCTTTaGAGGGATAGTACTCCAAGG +
Preference number: 2 (lower is better)
Translates to: LRKPGRWQVSNIMSPVFPLISIL*RDSTPR
Trigger: CCTTGGAGTACTATCCCTTCAAAGAATAGATATCAA...AGGAAACACTGGAGACATGATGTTAGACACTTGCCATCTCCCAGGTTTTCTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
3UTR-3UTR GCA 90 bp TTCTTTATAGTGAGTCCCAAAAGTGTGTCTAAATGGAAGGGTATGACAGTCAATTGTCCCAGATGCTGTTaGCAAATGACTTCATCCAAA +
Preference number: 2 (lower is better)
Translates to: FFIVSPKSVSKWKGMTVNCPRCC*QMTSSK
Trigger: TTTGGATGAAGTCATTTGGCAACAGCATCTGGGACA...ATTGACTGTCATACCCTTCCATTTAGACACACTTTTGGGACTCACTATAAAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
3UTR-3UTR CCA 90 bp TTCTTTATAGTGAGTCCCAAAAGTGTGTCTAAATGGAAGGGTATGACAGTCAATCACATTCATTCCCACTaGCATAATGAGACCAAGGAT +
Preference number: 2 (lower is better)
Translates to: FFIVSPKSVSKWKGMTVNHIHSH*HNETKD
Trigger: ATCCTTGGTCTCATTATGCCAGTGGGAATGAATGTG...ATTGACTGTCATACCCTTCCATTTAGACACACTTTTGGGACTCACTATAAAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
3UTR GCA 72 bp GGCCTGCCCCACTTCCTTCTCCTTCAGAACCTTCAGTaGATCGCAGCATCTCTCTTGGGTTGCATTTCATCT +
Preference number: 3 (lower is better)
Translates to: GLPHFLLLQNLQ*IAASLLGCISS
Trigger: AGATGAAATGCAACCCAAGAGAGATGCTGCGATGCACTGAAGGTTCTGAAGGAGAAGGAAGTGGGGCAGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000207307.2
ENSMUST00000207381.2
3UTR-3UTR CAA 90 bp TTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGATGCCCGTCTGGCTCTTCCACTaGTCCCTCACATCAGGGTTG +
Preference number: 3 (lower is better)
Translates to: FIQRVTFIPTGIMRPRMPVWLFH*SLTSGL
Trigger: CAACCCTGATGTGAGGGACAAGTGGAAGAGCCAGAC...GGGCATCCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207307.2
3UTR TCA 72 bp CATTGGTTGTTCATGCATTACCCAGGAGGTACTTTATaGTTAGCACCATCTCTCAGGCCCAGGAGAAAAGAC +
Preference number: 3 (lower is better)
Translates to: HWLFMHYPGGTL*LAPSLRPRRKD
Trigger: GTCTTTTCTCCTGGGCCTGAGAGATGGTGCTAATCATAAAGTACCTCCTGGGTAATGCATGAACAACCAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066465.3
3UTR GCA 72 bp TGTCTTCCTCTCCCACTAAGGTTGAGGTTACAGATGTaGATAGCCACAGATGGCTTTTACATAGCTATCAGG +
Preference number: 3 (lower is better)
Translates to: CLPLPLRLRLQM*IATDGFYIAIR
Trigger: CCTGATAGCTATGTAAAAGCCATCTGTGGCTATGCACATCTGTAACCTCAACCTTAGTGGGAGAGGAAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066465.3
3UTR-3UTR CAA 90 bp AAACCTGGGAGATGGCAAGTGTCTAACATCATGTCTCCAGTGTTTCCTCACAGCATTGGAACTTGTACCTaGTCAGATCCTCTTGTACAA +
Preference number: 3 (lower is better)
Translates to: KPGRWQVSNIMSPVFPHSIGTCT*SDPLVQ
Trigger: TTGTACAAGAGGATCTGACAAGGTACAAGTTCCAAT...GCTGTGAGGAAACACTGGAGACATGATGTTAGACACTTGCCATCTCCCAGGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207307.2
3UTR-3UTR CAA 90 bp AATGACTTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGGAAAACAGAGTTCTCTaGGTAAAAGCAATGCTGAGG +
Preference number: 3 (lower is better)
Translates to: NDFIQRVTFIPTGIMRPRENRVL*VKAMLR
Trigger: CCTCAGCATTGCTTTTACCAAGAGAACTCTGTTTTC...CCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAAGTCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
3UTR CCA 72 bp ACTAAGGTTGAGGTTACAGATGTGCATAGCCACAGATaGCTTTTACATAGCTATCAGGGATCTGAACATTGG +
Preference number: 3 (lower is better)
Translates to: TKVEVTDVHSHR*LLHSYQGSEHW
Trigger: CCAATGTTCAGATCCCTGATAGCTATGTAAAAGCCATCTGTGGCTATGCACATCTGTAACCTCAACCTTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066465.3
3UTR-3UTR CAA 90 bp TTAAGAAAACCTGGGAGATGGCAAGTGTCTAACATCATGTCTCCAGTGTTTCCTGTCGAGTTTCTTGAATaGCCACAGATGACAACTGTT +
Preference number: 3 (lower is better)
Translates to: LRKPGRWQVSNIMSPVFPVEFLE*PQMTTV
Trigger: AACAGTTGTCATCTGTGGCAATTCAAGAAACTCGAC...AGGAAACACTGGAGACATGATGTTAGACACTTGCCATCTCCCAGGTTTTCTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207307.2
3UTR-3UTR CAA 90 bp CTTTTACATAGCTATCAGGGATCTGAACATTGGTTGTTCATGCATTACCCAGGAGAAAACAGAGTTCTCTaGGTAAAAGCAATGCTGAGG +
Preference number: 3 (lower is better)
Translates to: LLHSYQGSEHWLFMHYPGENRVL*VKAMLR
Trigger: CCTCAGCATTGCTTTTACCAAGAGAACTCTGTTTTC...TCCTGGGTAATGCATGAACAACCAATGTTCAGATCCCTGATAGCTATGTAAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000066465.3
3UTR-3UTR CAA 90 bp CATAGCTATCAGGGATCTGAACATTGGTTGTTCATGCATTACCCAGGAGGTACTTATTTCTCTATTGCTTaGGCAGTTGTGTGTGTTTTC +
Preference number: 3 (lower is better)
Translates to: HSYQGSEHWLFMHYPGGTYFSIA*AVVCVF
Trigger: GAAAACACACACAACTGCCAAAGCAATAGAGAAATA...AGTACCTCCTGGGTAATGCATGAACAACCAATGTTCAGATCCCTGATAGCTATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066465.3
3UTR-3UTR CAA 90 bp CTTTTACATAGCTATCAGGGATCTGAACATTGGTTGTTCATGCATTACCCAGGACTATTGCTTTGGCAGTaGTGTGTGTTTTCAGTTTTA +
Preference number: 3 (lower is better)
Translates to: LLHSYQGSEHWLFMHYPGLLLWQ*CVFSVL
Trigger: TAAAACTGAAAACACACACAACTGCCAAAGCAATAG...TCCTGGGTAATGCATGAACAACCAATGTTCAGATCCCTGATAGCTATGTAAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000066465.3
3UTR CCA 72 bp CTTTTCTTTATAGTGAGTCCCAAAAGTGTGTCTAAATaGAAGGGTATGACAGTCAATGTTATGTCCCAGATG +
Preference number: 3 (lower is better)
Translates to: LFFIVSPKSVSK*KGMTVNVMSQM
Trigger: CATCTGGGACATAACATTGACTGTCATACCCTTCCATTTAGACACACTTTTGGGACTCACTATAAAGAAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
3UTR CCA 72 bp ATTAGATGTTTCTACTTCTTAAGAAAACCTGGGAGATaGCAAGTGTCTAACATCATGTCTCCAGTGTTTCCT +
Preference number: 3 (lower is better)
Translates to: IRCFYFLRKPGR*QVSNIMSPVFP
Trigger: AGGAAACACTGGAGACATGATGTTAGACACTTGCCATCTCCCAGGTTTTCTTAAGAAGTAGAAACATCTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
CDS-3UTR TCA 90 bp AGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGAACCCTCACATCAGGGTTaGGGGCCTCTCCACCCGTCA +
Preference number: 4 (lower is better)
Translates to: RDSTPRRSWPAPLPSPSEPSHQG*GPLHPS
Trigger: TGACGGGTGGAGAGGCCCTCAACCCTGATGTGAGGG...TTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR TCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTCCCTCACATCAGGGTTaGGGGCCTCTCCACCCGTCA +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTPSHQG*GPLHPS
Trigger: TGACGGGTGGAGAGGCCCTCAACCCTGATGTGAGGG...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CCA 90 bp GATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGAACCTGAACTCCTCAGAGCCTaGCAGGCCAGGCCTCTTAGC +
Preference number: 4 (lower is better)
Translates to: DSTPRRSWPAPLPSPSEPELLRA*QARPLS
Trigger: GCTAAGAGGCCTGGCCTGCCAGGCTCTGAGGAGTTC...AGGTTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207381.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp GAAGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGGATCGGGGGAGGTGGTaGCTGTGTGTGAATCCTGCA +
Preference number: 4 (lower is better)
Translates to: EGIVLQGGAGLPHFLLLQDRGRW*LCVNPA
Trigger: TGCAGGATTCACACACAGCCACCACCTCCCCCGATC...CTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207381.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTGAACTCCTCAGAGCCTaGCAGGCCAGGCCTCTTAGC +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTELLRA*QARPLS
Trigger: GCTAAGAGGCCTGGCCTGCCAGGCTCTGAGGAGTTC...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CCA 90 bp GAAGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGTCCTTCGCTGTCAGCTaGGAGACTCCTGGGATCATG +
Preference number: 4 (lower is better)
Translates to: EGIVLQGGAGLPHFLLLQSFAVS*ETPGIM
Trigger: CATGATCCCAGGAGTCTCCCAGCTGACAGCGAAGGA...CTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTCAGCCGGAAGAGGGTTaGGACACAGCACAGGGTGGT +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTQPEEG*DTAQGG
Trigger: ACCACCCTGTGCTGTGTCCCAACCCTCTTCCGGCTG...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR TCA 90 bp GAAGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGAAAGTCTCCTTGCTCTaGTGCTGCTGTCTTCTCGGG +
Preference number: 4 (lower is better)
Translates to: EGIVLQGGAGLPHFLLLQKVSLL*CCCLLG
Trigger: CCCGAGAAGACAGCAGCATCAGAGCAAGGAGACTTT...CTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR GCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTTTGGCCCTGGCAGCCTaGAGCCGATACTTGAGATCC +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTLALAA*SRYLRS
Trigger: GGATCTCAAGTATCGGCTGCAGGCTGCCAGGGCCAA...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CCA 90 bp GTGCATCGCAGCATCTCTCTTGGGTTGCATTTCATCTCCCCCACTCTTGGTTTCGAACTCCTCAGAGCCTaGCAGGCCAGGCCTCTTAGC +
Preference number: 4 (lower is better)
Translates to: VHRSISLGLHFISPTLGFELLRA*QARPLS
Trigger: GCTAAGAGGCCTGGCCTGCCAGGCTCTGAGGAGTTC...GAAACCAAGAGTGGGGGAGATGAAATGCAACCCAAGAGAGATGCTGCGATGCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000207307.2
ENSMUST00000207381.2
CDS-3UTR CCA 90 bp GAAGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGCACCCTCTAAGACATTaGCTGCCTTCCTCGACTGCT +
Preference number: 4 (lower is better)
Translates to: EGIVLQGGAGLPHFLLLQHPLRH*LPSSTA
Trigger: AGCAGTCGAGGAAGGCAGCCAATGTCTTAGAGGGTG...CTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp GAAGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGGGACACAGCACAGGGTaGTTATTGGGAACCTGCAGA +
Preference number: 4 (lower is better)
Translates to: EGIVLQGGAGLPHFLLLQGHSTG*LLGTCR
Trigger: TCTGCAGGTTCCCAATAACCACCCTGTGCTGTGTCC...CTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTAGCTCCAGGCCTGTCTaGCTCTTCCACTTGTCCCTC +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTSSRPV*LFHLSL
Trigger: GAGGGACAAGTGGAAGAGCCAGACAGGCCTGGAGCT...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CCA 90 bp GATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGAACCTGTCTTCACATGCTCCTaGAGTTCCCTGGTCAGGGCT +
Preference number: 4 (lower is better)
Translates to: DSTPRRSWPAPLPSPSEPVFTCS*SSLVRA
Trigger: AGCCCTGACCAGGGAACTCCAGGAGCATGTGAAGAC...AGGTTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR GCA 90 bp CTATTCTTTGAAGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTTTGGCCCTGGCAGCCTaGAGCCGATACTTGAGATCC +
Preference number: 4 (lower is better)
Translates to: LFFEGIVLQGGAGLPHFLLALAA*SRYLRS
Trigger: GGATCTCAAGTATCGGCTGCAGGCTGCCAGGGCCAA...AAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCTTCAAAGAATAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR GCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTGAAGAGGGTCCAGGCTaGTTTCACCCATCCAGTGTC +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTEEGPG*FHPSSV
Trigger: GACACTGGATGGGTGAAAGCAGCCTGGACCCTCTTC...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CCA 90 bp GTCTCCAGTGTTTCCTCACAGCAGCTTCCCAGTGTAGCTTATGTTCCCCCTCCCCACCCTCTAAGACATTaGCTGCCTTCCTCGACTGCT +
Preference number: 4 (lower is better)
Translates to: VSSVSSQQLPSVAYVPPPHPLRH*LPSSTA
Trigger: AGCAGTCGAGGAAGGCAGCCAATGTCTTAGAGGGTG...GGGAGGGGGAACATAAGCTACACTGGGAAGCTGCTGTGAGGAAACACTGGAGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
CDS-3UTR CCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTTCCTTCGCTGTCAGCTaGGAGACTCCTGGGATCATG +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTSFAVS*ETPGIM
Trigger: CATGATCCCAGGAGTCTCCCAGCTGACAGCGAAGGA...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTCACACAGTTGTGCTCTaGAGAAGCCGCTCTCAGGAG +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTHTVVL*RSRSQE
Trigger: CTCCTGAGAGCGGCTTCTCCAGAGCACAACTGTGTG...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTAATGTTCCACCATCTTaGGGGCCCCTGTGGTTCCAC +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTNVPPS*GPLWFH
Trigger: GTGGAACCACAGGGGCCCCCAAGATGGTGGAACATT...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR TCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTAAAGTCTCCTTGCTCTaGTGCTGCTGTCTTCTCGGG +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTKVSLL*CCCLLG
Trigger: CCCGAGAAGACAGCAGCATCAGAGCAAGGAGACTTT...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR GCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTTCCAGGACAGCTGGATaGTCAGCAAGTGCACTCTCT +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTSRTAG*SASALS
Trigger: AGAGAGTGCACTTGCTGAGCATCCAGCTGTCCTGGA...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CCA 90 bp TTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGATGCCCGAACTCCTCAGAGCCTaGCAGGCCAGGCCTCTTAGC +
Preference number: 4 (lower is better)
Translates to: FIQRVTFIPTGIMRPRMPELLRA*QARPLS
Trigger: GCTAAGAGGCCTGGCCTGCCAGGCTCTGAGGAGTTC...GGGCATCCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTCACCCTCTAAGACATTaGCTGCCTTCCTCGACTGCT +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTHPLRH*LPSSTA
Trigger: AGCAGTCGAGGAAGGCAGCCAATGTCTTAGAGGGTG...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTACCAGAAGCTTGGTTTaGAGGGAGGGACAGTCAGCA +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTTRSLV*REGQSA
Trigger: TGCTGACTGTCCCTCCCTCCAAACCAAGCTTCTGGT...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CCA 90 bp ATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGAACCTTCAGACACCAGAAGCTTaGTTTGGAGGGAGGGACAGT +
Preference number: 4 (lower is better)
Translates to: IVLQGGAGLPHFLLLQNLQTPEA*FGGRDS
Trigger: ACTGTCCCTCCCTCCAAACCAAGCTTCTGGTGTCTG...AAGGTTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTCAGACACCAGAAGCTTaGTTTGGAGGGAGGGACAGT +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTQTPEA*FGGRDS
Trigger: ACTGTCCCTCCCTCCAAACCAAGCTTCTGGTGTCTG...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CCA 90 bp AGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGAATCCACCTCCTTCCACTaGCCACAAAACCCAATCCAT +
Preference number: 4 (lower is better)
Translates to: RDSTPRRSWPAPLPSPSESTSFH*PQNPIH
Trigger: ATGGATTGGGTTTTGTGGCCAGTGGAAGGAGGTGGA...TTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTGGACACAGCACAGGGTaGTTATTGGGAACCTGCAGA +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTGHSTG*LLGTCR
Trigger: TCTGCAGGTTCCCAATAACCACCCTGTGCTGTGTCC...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CCA 90 bp GGATGTCTTCAGAGAGGGAAATTAAGCTGTAGGGCATTTGCTGGACTGGGCAGTAGCTCCAGGCCTGTCTaGCTCTTCCACTTGTCCCTC +
Preference number: 4 (lower is better)
Translates to: GCLQRGKLSCRAFAGLGSSSRPV*LFHLSL
Trigger: GAGGGACAAGTGGAAGAGCCAGACAGGCCTGGAGCT...ACTGCCCAGTCCAGCAAATGCCCTACAGCTTAATTTCCCTCTCTGAAGACATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR TCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTCCTGTCTTTTCCAGCTaGCTCCACACATCCAACACA +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTPVFSS*LHTSNT
Trigger: TGTGTTGGATGTGTGGAGTCAGCTGGAAAAGACAGG...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR TCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTCTGTGGTTCCACTGGTaGAGTAGATGGCCACTGAAT +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTLWFHW*SRWPLN
Trigger: ATTCAGTGGCCATCTACTTCACCAGTGGAACCACAG...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR GCA 90 bp GGATGTCTTCAGAGAGGGAAATTAAGCTGTAGGGCATTTGCTGGACTGGGCAGTCTGATGGCATCCACTTaGGGAGCTAGGGCATCACTG +
Preference number: 4 (lower is better)
Translates to: GCLQRGKLSCRAFAGLGSLMAST*GARASL
Trigger: CAGTGATGCCCTAGCTCCGCAAGTGGATGCCATCAG...ACTGCCCAGTCCAGCAAATGCCCTACAGCTTAATTTCCCTCTCTGAAGACATCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp CTATTCTTTGAAGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTACCAGAAGCTTGGTTTaGAGGGAGGGACAGTCAGCA +
Preference number: 4 (lower is better)
Translates to: LFFEGIVLQGGAGLPHFLTRSLV*REGQSA
Trigger: TGCTGACTGTCCCTCCCTCCAAACCAAGCTTCTGGT...AAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCTTCAAAGAATAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp TTCAGTGCATCGCAGCATCTCTCTTGGGTTGCATTTCATCTCCCCCACTCTTGGCAGACACCAGAAGCTTaGTTTGGAGGGAGGGACAGT +
Preference number: 4 (lower is better)
Translates to: FSASQHLSWVAFHLPHSWQTPEA*FGGRDS
Trigger: ACTGTCCCTCCCTCCAAACCAAGCTTCTGGTGTCTG...CCAAGAGTGGGGGAGATGAAATGCAACCCAAGAGAGATGCTGCGATGCACTGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207307.2
CDS-3UTR CCA 90 bp TTTGCTGGACTGGGCAGTGTATGTGAGCTCTGGACCAGGGATGCTCTTACATTTAATGTTCCACCATCTTaGGGGCCCCTGTGGTTCCAC +
Preference number: 4 (lower is better)
Translates to: FAGLGSVCELWTRDALTFNVPPS*GPLWFH
Trigger: GTGGAACCACAGGGGCCCCCAAGATGGTGGAACATT...AAATGTAAGAGCATCCCTGGTCCAGAGCTCACATACACTGCCCAGTCCAGCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTTCCACCTCCTTCCACTaGCCACAAAACCCAATCCAT +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTSTSFH*PQNPIH
Trigger: ATGGATTGGGTTTTGTGGCCAGTGGAAGGAGGTGGA...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CCA 90 bp GACTTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGATGCAGCCGGAAGAGGGTTaGGACACAGCACAGGGTGGT +
Preference number: 4 (lower is better)
Translates to: DFIQRVTFIPTGIMRPRMQPEEG*DTAQGG
Trigger: ACCACCCTGTGCTGTGTCCCAACCCTCTTCCGGCTG...CATCCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp ATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGAACCTTCTGCACATCGTAAGGTaGGCTTGCTTTCCCCATAGA +
Preference number: 4 (lower is better)
Translates to: IVLQGGAGLPHFLLLQNLLHIVR*ACFPHR
Trigger: TCTATGGGGAAAGCAAGCCCACCTTACGATGTGCAG...AAGGTTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207381.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTCTGCACATCGTAAGGTaGGCTTGCTTTCCCCATAGA +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTLHIVR*ACFPHR
Trigger: TCTATGGGGAAAGCAAGCCCACCTTACGATGTGCAG...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR TCA 90 bp CTATTCTTTGAAGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCCTGTCTTTTCCAGCTaGCTCCACACATCCAACACA +
Preference number: 4 (lower is better)
Translates to: LFFEGIVLQGGAGLPHFLPVFSS*LHTSNT
Trigger: TGTGTTGGATGTGTGGAGTCAGCTGGAAAAGACAGG...AAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCTTCAAAGAATAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR TCA 90 bp CTATTCTTTGAAGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTGTGGTTCCACTGGTaGAGTAGATGGCCACTGAAT +
Preference number: 4 (lower is better)
Translates to: LFFEGIVLQGGAGLPHFLLWFHW*SRWPLN
Trigger: ATTCAGTGGCCATCTACTTCACCAGTGGAACCACAG...AAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCTTCAAAGAATAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR GCA 90 bp TTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGATGCCCGAAGAGGGTCCAGGCTaGTTTCACCCATCCAGTGTC +
Preference number: 4 (lower is better)
Translates to: FIQRVTFIPTGIMRPRMPEEGPG*FHPSSV
Trigger: GACACTGGATGGGTGAAAGCAGCCTGGACCCTCTTC...GGGCATCCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR GCA 90 bp ATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGAACCTTATCCTCGTCCATATGTaGTCTGTCCCCAGTGATGTA +
Preference number: 4 (lower is better)
Translates to: IVLQGGAGLPHFLLLQNLILVHM*SVPSDV
Trigger: TACATCACTGGGGACAGAGCACATATGGACGAGGAT...AAGGTTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR GCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTATCCTCGTCCATATGTaGTCTGTCCCCAGTGATGTA +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTILVHM*SVPSDV
Trigger: TACATCACTGGGGACAGAGCACATATGGACGAGGAT...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR GCA 90 bp GGATGTCTTCAGAGAGGGAAATTAAGCTGTAGGGCATTTGCTGGACTGGGCAGTGTCACTGTCTTCACATaGTCCTGGAGTTCCCTGGTC +
Preference number: 4 (lower is better)
Translates to: GCLQRGKLSCRAFAGLGSVTVFT*SWSSLV
Trigger: GACCAGGGAACTCCAGGAGCATGTGAAGACAGTGAC...ACTGCCCAGTCCAGCAAATGCCCTACAGCTTAATTTCCCTCTCTGAAGACATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp TTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGATGCCCTCCTTCGCTGTCAGCTaGGAGACTCCTGGGATCATG +
Preference number: 4 (lower is better)
Translates to: FIQRVTFIPTGIMRPRMPSFAVS*ETPGIM
Trigger: CATGATCCCAGGAGTCTCCCAGCTGACAGCGAAGGA...GGGCATCCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp ATTGCCCTCCTCATCTACAATCTGCACATCGTAAGGTGGGCTTGCTTTCCCCATACCAGAAGCTTGGTTTaGAGGGAGGGACAGTCAGCA +
Preference number: 4 (lower is better)
Translates to: IALLIYNLHIVRWACFPHTRSLV*REGQSA
Trigger: TGCTGACTGTCCCTCCCTCCAAACCAAGCTTCTGGT...ATGGGGAAAGCAAGCCCACCTTACGATGTGCAGATTGTAGATGAGGAGGGCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207307.2
CDS-3UTR CCA 90 bp TTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGATGCCCCACACAGTTGTGCTCTaGAGAAGCCGCTCTCAGGAG +
Preference number: 4 (lower is better)
Translates to: FIQRVTFIPTGIMRPRMPHTVVL*RSRSQE
Trigger: CTCCTGAGAGCGGCTTCTCCAGAGCACAACTGTGTG...GGGCATCCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTGCACAGGGTGGTTATTaGGAACCTGCAGAGAGTATT +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTAQGGY*EPAESI
Trigger: AATACTCTCTGCAGGTTCCCAATAACCACCCTGTGC...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CCA 90 bp AATGACTTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGCAGCCGGAAGAGGGTTaGGACACAGCACAGGGTGGT +
Preference number: 4 (lower is better)
Translates to: NDFIQRVTFIPTGIMRPRQPEEG*DTAQGG
Trigger: ACCACCCTGTGCTGTGTCCCAACCCTCTTCCGGCTG...CCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAAGTCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR TCA 90 bp TTGGCTAGGCTGGCTAGCCAGCAAGCTCTCGGGATCTTCTTGTCTTCCTCTCCCTTGAATTGCCACAGATaGCAACTGTTTCTGATTGTC +
Preference number: 4 (lower is better)
Translates to: LARLASQQALGIFLSSSPLNCHR*QLFLIV
Trigger: GACAATCAGAAACAGTTGTCATCTGTGGCAATTCAA...GGGAGAGGAAGACAAGAAGATCCCGAGAGCTTGCTGGCTAGCCAGCCTAGCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066465.3
CDS-3UTR TCA 90 bp GATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGAACCTTTGTCCATAGCATCATaGGCAAAGTTGAAGTACTCG +
Preference number: 4 (lower is better)
Translates to: DSTPRRSWPAPLPSPSEPLSIAS*AKLKYS
Trigger: CGAGTACTTCAACTTTGCTCATGATGCTATGGACAA...AGGTTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207381.2
CDS-3UTR GCA 90 bp CATAGCTATCAGGGATCTGAACATTGGTTGTTCATGCATTACCCAGGAGGTACTTTGGCCCTGGCAGCCTaGAGCCGATACTTGAGATCC +
Preference number: 4 (lower is better)
Translates to: HSYQGSEHWLFMHYPGGTLALAA*SRYLRS
Trigger: GGATCTCAAGTATCGGCTGCAGGCTGCCAGGGCCAA...AGTACCTCCTGGGTAATGCATGAACAACCAATGTTCAGATCCCTGATAGCTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066465.3
CDS-3UTR GCA 90 bp CTATTCTTTGAAGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTATCCTCGTCCATATGTaGTCTGTCCCCAGTGATGTA +
Preference number: 4 (lower is better)
Translates to: LFFEGIVLQGGAGLPHFLILVHM*SVPSDV
Trigger: TACATCACTGGGGACAGAGCACATATGGACGAGGAT...AAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCTTCAAAGAATAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR GCA 90 bp TTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGATGCCCTCCAGGACAGCTGGATaGTCAGCAAGTGCACTCTCT +
Preference number: 4 (lower is better)
Translates to: FIQRVTFIPTGIMRPRMPSRTAG*SASALS
Trigger: AGAGAGTGCACTTGCTGAGCATCCAGCTGTCCTGGA...GGGCATCCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTCTGAATCTCCACTTCTaGTTCTCACACAGTTGTGCT +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTLNLHF*FSHSCA
Trigger: AGCACAACTGTGTGAGAACCAGAAGTGGAGATTCAG...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CCA 90 bp TTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGATGCCCGGACACAGCACAGGGTaGTTATTGGGAACCTGCAGA +
Preference number: 4 (lower is better)
Translates to: FIQRVTFIPTGIMRPRMPGHSTG*LLGTCR
Trigger: TCTGCAGGTTCCCAATAACCACCCTGTGCTGTGTCC...GGGCATCCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp GACTTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGATGGTCTTCACATGCTCCTaGAGTTCCCTGGTCAGGGCT +
Preference number: 4 (lower is better)
Translates to: DFIQRVTFIPTGIMRPRMVFTCS*SSLVRA
Trigger: AGCCCTGACCAGGGAACTCCAGGAGCATGTGAAGAC...CATCCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR TCA 90 bp ATTGCCCTCCTCATCTACAATCTGCACATCGTAAGGTGGGCTTGCTTTCCCCATGAAGTAGATGGCCACTaGATCTCCACTTCTGGTTCT +
Preference number: 4 (lower is better)
Translates to: IALLIYNLHIVRWACFPHEVDGH*ISTSGS
Trigger: AGAACCAGAAGTGGAGATTCAGTGGCCATCTACTTC...ATGGGGAAAGCAAGCCCACCTTACGATGTGCAGATTGTAGATGAGGAGGGCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207307.2
CDS-3UTR TCA 90 bp AAACCTGGGAGATGGCAAGTGTCTAACATCATGTCTCCAGTGTTTCCTCACAGCCTGTGGTTCCACTGGTaGAGTAGATGGCCACTGAAT +
Preference number: 4 (lower is better)
Translates to: KPGRWQVSNIMSPVFPHSLWFHW*SRWPLN
Trigger: ATTCAGTGGCCATCTACTTCACCAGTGGAACCACAG...GCTGTGAGGAAACACTGGAGACATGATGTTAGACACTTGCCATCTCCCAGGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
CDS-3UTR TCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTGATGACAACTGTTTCTaGTTGTCCATAGCCTTCATG +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTDDNCF*LSIAFM
Trigger: CATGAAGGCTATGGACAATCAGAAACAGTTGTCATC...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR TCA 90 bp GATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGAACCTTTGAATTGCCACAGATaGCAACTGTTTCTGATTGTC +
Preference number: 4 (lower is better)
Translates to: DSTPRRSWPAPLPSPSEPLNCHR*QLFLIV
Trigger: GACAATCAGAAACAGTTGTCATCTGTGGCAATTCAA...AGGTTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207381.2
ENSMUST00000207440.2
CDS-3UTR GCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTCTGATTCCCATAAGATaGAAAGACACTGGAGGAAGT +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTLIPIR*KDTGGS
Trigger: ACTTCCTCCAGTGTCTTTGCATCTTATGGGAATCAG...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CCA 90 bp GACTTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGATGCACCCTCTAAGACATTaGCTGCCTTCCTCGACTGCT +
Preference number: 4 (lower is better)
Translates to: DFIQRVTFIPTGIMRPRMHPLRH*LPSSTA
Trigger: AGCAGTCGAGGAAGGCAGCCAATGTCTTAGAGGGTG...CATCCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp AATGACTTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGTCCTTCGCTGTCAGCTaGGAGACTCCTGGGATCATG +
Preference number: 4 (lower is better)
Translates to: NDFIQRVTFIPTGIMRPRSFAVS*ETPGIM
Trigger: CATGATCCCAGGAGTCTCCCAGCTGACAGCGAAGGA...CCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAAGTCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp TGTGCCGATTTGTCTGTCCCAGGAAAACAGAGTTCTCTTGGTAAAAGCAATGCTCACACAGTTGTGCTCTaGAGAAGCCGCTCTCAGGAG +
Preference number: 4 (lower is better)
Translates to: CADLSVPGKQSSLGKSNAHTVVL*RSRSQE
Trigger: CTCCTGAGAGCGGCTTCTCCAGAGCACAACTGTGTG...AGCATTGCTTTTACCAAGAGAACTCTGTTTTCCTGGGACAGACAAATCGGCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp TGTGCCGATTTGTCTGTCCCAGGAAAACAGAGTTCTCTTGGTAAAAGCAATGCTAATGTTCCACCATCTTaGGGGCCCCTGTGGTTCCAC +
Preference number: 4 (lower is better)
Translates to: CADLSVPGKQSSLGKSNANVPPS*GPLWFH
Trigger: GTGGAACCACAGGGGCCCCCAAGATGGTGGAACATT...AGCATTGCTTTTACCAAGAGAACTCTGTTTTCCTGGGACAGACAAATCGGCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp AAGGTTGAGGTTACAGATGTGCATAGCCACAGATGGCTTTTACATAGCTATCAGAGCTCCAGGCCTGTCTaGCTCTTCCACTTGTCCCTC +
Preference number: 4 (lower is better)
Translates to: KVEVTDVHSHRWLLHSYQSSRPV*LFHLSL
Trigger: GAGGGACAAGTGGAAGAGCCAGACAGGCCTGGAGCT...CTGATAGCTATGTAAAAGCCATCTGTGGCTATGCACATCTGTAACCTCAACCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066465.3
CDS-3UTR CCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTAAGATGCAAAGACACTaGAGGAAGTACCTTCCCAAT +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTKMQRH*RKYLPN
Trigger: ATTGGGAAGGTACTTCCTCCAGTGTCTTTGCATCTT...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR TCA 90 bp TTCTTTATAGTGAGTCCCAAAAGTGTGTCTAAATGGAAGGGTATGACAGTCAATCCCTCACATCAGGGTTaGGGGCCTCTCCACCCGTCA +
Preference number: 4 (lower is better)
Translates to: FFIVSPKSVSKWKGMTVNPSHQG*GPLHPS
Trigger: TGACGGGTGGAGAGGCCCTCAACCCTGATGTGAGGG...ATTGACTGTCATACCCTTCCATTTAGACACACTTTTGGGACTCACTATAAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR TCA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTTTGAATTGCCACAGATaGCAACTGTTTCTGATTGTC +
Preference number: 4 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTLNCHR*QLFLIV
Trigger: GACAATCAGAAACAGTTGTCATCTGTGGCAATTCAA...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR GCA 90 bp TGTGCCGATTTGTCTGTCCCAGGAAAACAGAGTTCTCTTGGTAAAAGCAATGCTGTCACTGTCTTCACATaGTCCTGGAGTTCCCTGGTC +
Preference number: 4 (lower is better)
Translates to: CADLSVPGKQSSLGKSNAVTVFT*SWSSLV
Trigger: GACCAGGGAACTCCAGGAGCATGTGAAGACAGTGAC...AGCATTGCTTTTACCAAGAGAACTCTGTTTTCCTGGGACAGACAAATCGGCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp AATGACTTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGACCAGAAGCTTGGTTTaGAGGGAGGGACAGTCAGCA +
Preference number: 4 (lower is better)
Translates to: NDFIQRVTFIPTGIMRPRTRSLV*REGQSA
Trigger: TGCTGACTGTCCCTCCCTCCAAACCAAGCTTCTGGT...CCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAAGTCATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR TCA 90 bp TGTGCCGATTTGTCTGTCCCAGGAAAACAGAGTTCTCTTGGTAAAAGCAATGCTCTGTGGTTCCACTGGTaGAGTAGATGGCCACTGAAT +
Preference number: 4 (lower is better)
Translates to: CADLSVPGKQSSLGKSNALWFHW*SRWPLN
Trigger: ATTCAGTGGCCATCTACTTCACCAGTGGAACCACAG...AGCATTGCTTTTACCAAGAGAACTCTGTTTTCCTGGGACAGACAAATCGGCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR TCA 90 bp TTCAGTGCATCGCAGCATCTCTCTTGGGTTGCATTTCATCTCCCCCACTCTTGGTTGAATTGCCACAGATaGCAACTGTTTCTGATTGTC +
Preference number: 4 (lower is better)
Translates to: FSASQHLSWVAFHLPHSWLNCHR*QLFLIV
Trigger: GACAATCAGAAACAGTTGTCATCTGTGGCAATTCAA...CCAAGAGTGGGGGAGATGAAATGCAACCCAAGAGAGATGCTGCGATGCACTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207381.2
CDS-3UTR CCA 90 bp CATAGCTATCAGGGATCTGAACATTGGTTGTTCATGCATTACCCAGGAGGTACTCTGCACATCGTAAGGTaGGCTTGCTTTCCCCATAGA +
Preference number: 4 (lower is better)
Translates to: HSYQGSEHWLFMHYPGGTLHIVR*ACFPHR
Trigger: TCTATGGGGAAAGCAAGCCCACCTTACGATGTGCAG...AGTACCTCCTGGGTAATGCATGAACAACCAATGTTCAGATCCCTGATAGCTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066465.3
CDS-3UTR CCA 90 bp TGTGCCGATTTGTCTGTCCCAGGAAAACAGAGTTCTCTTGGTAAAAGCAATGCTCTGCACATCGTAAGGTaGGCTTGCTTTCCCCATAGA +
Preference number: 4 (lower is better)
Translates to: CADLSVPGKQSSLGKSNALHIVR*ACFPHR
Trigger: TCTATGGGGAAAGCAAGCCCACCTTACGATGTGCAG...AGCATTGCTTTTACCAAGAGAACTCTGTTTTCCTGGGACAGACAAATCGGCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR TCA 90 bp ACTAAGGTTGAGGTTACAGATGTGCATAGCCACAGATGGCTTTTACATAGCTATAAAGTCTCCTTGCTCTaGTGCTGCTGTCTTCTCGGG +
Preference number: 4 (lower is better)
Translates to: TKVEVTDVHSHRWLLHSYKVSLL*CCCLLG
Trigger: CCCGAGAAGACAGCAGCATCAGAGCAAGGAGACTTT...ATAGCTATGTAAAAGCCATCTGTGGCTATGCACATCTGTAACCTCAACCTTAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066465.3
CDS-3UTR TCA 90 bp CCCAACCCAGGACGTAGGCTATACCTAAGTTCTTCAATAGTTACATTGTTGATTCCTGTCTTTTCCAGCTaGCTCCACACATCCAACACA +
Preference number: 4 (lower is better)
Translates to: PNPGRRLYLSSSIVTLLIPVFSS*LHTSNT
Trigger: TGTGTTGGATGTGTGGAGTCAGCTGGAAAAGACAGG...AATCAACAATGTAACTATTGAAGAACTTAGGTATAGCCTACGTCCTGGGTTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
CDS-3UTR GCA 90 bp GCTTTGGCAGTTGTGTGTGTTTTCAGTTTTAAGCACTATCTCACTGAATATCTTCTGATGGCATCCACTTaGGGAGCTAGGGCATCACTG +
Preference number: 4 (lower is better)
Translates to: ALAVVCVFSFKHYLTEYLLMAST*GARASL
Trigger: CAGTGATGCCCTAGCTCCGCAAGTGGATGCCATCAG...AAGATATTCAGTGAGATAGTGCTTAAAACTGAAAACACACACAACTGCCAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
CDS-3UTR CCA 90 bp TTCTTTATAGTGAGTCCCAAAAGTGTGTCTAAATGGAAGGGTATGACAGTCAATCACACAGTTGTGCTCTaGAGAAGCCGCTCTCAGGAG +
Preference number: 4 (lower is better)
Translates to: FFIVSPKSVSKWKGMTVNHTVVL*RSRSQE
Trigger: CTCCTGAGAGCGGCTTCTCCAGAGCACAACTGTGTG...ATTGACTGTCATACCCTTCCATTTAGACACACTTTTGGGACTCACTATAAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp AATGACTTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGCTGAATCTCCACTTCTaGTTCTCACACAGTTGTGCT +
Preference number: 4 (lower is better)
Translates to: NDFIQRVTFIPTGIMRPRLNLHF*FSHSCA
Trigger: AGCACAACTGTGTGAGAACCAGAAGTGGAGATTCAG...CCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAAGTCATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp TTCTTTATAGTGAGTCCCAAAAGTGTGTCTAAATGGAAGGGTATGACAGTCAATAATGTTCCACCATCTTaGGGGCCCCTGTGGTTCCAC +
Preference number: 4 (lower is better)
Translates to: FFIVSPKSVSKWKGMTVNNVPPS*GPLWFH
Trigger: GTGGAACCACAGGGGCCCCCAAGATGGTGGAACATT...ATTGACTGTCATACCCTTCCATTTAGACACACTTTTGGGACTCACTATAAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp ATCAGGGATCTGAACATTGGTTGTTCATGCATTACCCAGGAGGTACTTTATGATTCCACCTCCTTCCACTaGCCACAAAACCCAATCCAT +
Preference number: 4 (lower is better)
Translates to: IRDLNIGCSCITQEVLYDSTSFH*PQNPIH
Trigger: ATGGATTGGGTTTTGTGGCCAGTGGAAGGAGGTGGA...ATCATAAAGTACCTCCTGGGTAATGCATGAACAACCAATGTTCAGATCCCTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066465.3
CDS-3UTR TCA 90 bp CCCAACCCAGGACGTAGGCTATACCTAAGTTCTTCAATAGTTACATTGTTGATTGAAGTAGATGGCCACTaGATCTCCACTTCTGGTTCT +
Preference number: 4 (lower is better)
Translates to: PNPGRRLYLSSSIVTLLIEVDGH*ISTSGS
Trigger: AGAACCAGAAGTGGAGATTCAGTGGCCATCTACTTC...AATCAACAATGTAACTATTGAAGAACTTAGGTATAGCCTACGTCCTGGGTTGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
CDS-3UTR GCA 90 bp TTCTTTATAGTGAGTCCCAAAAGTGTGTCTAAATGGAAGGGTATGACAGTCAATTCCAGGACAGCTGGATaGTCAGCAAGTGCACTCTCT +
Preference number: 4 (lower is better)
Translates to: FFIVSPKSVSKWKGMTVNSRTAG*SASALS
Trigger: AGAGAGTGCACTTGCTGAGCATCCAGCTGTCCTGGA...ATTGACTGTCATACCCTTCCATTTAGACACACTTTTGGGACTCACTATAAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp GCTTTGGCAGTTGTGTGTGTTTTCAGTTTTAAGCACTATCTCACTGAATATCTTCAGACACCAGAAGCTTaGTTTGGAGGGAGGGACAGT +
Preference number: 4 (lower is better)
Translates to: ALAVVCVFSFKHYLTEYLQTPEA*FGGRDS
Trigger: ACTGTCCCTCCCTCCAAACCAAGCTTCTGGTGTCTG...AAGATATTCAGTGAGATAGTGCTTAAAACTGAAAACACACACAACTGCCAAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
CDS-3UTR CCA 90 bp CCCAACCCAGGACGTAGGCTATACCTAAGTTCTTCAATAGTTACATTGTTGATTGCACAGGGTGGTTATTaGGAACCTGCAGAGAGTATT +
Preference number: 4 (lower is better)
Translates to: PNPGRRLYLSSSIVTLLIAQGGY*EPAESI
Trigger: AATACTCTCTGCAGGTTCCCAATAACCACCCTGTGC...AATCAACAATGTAACTATTGAAGAACTTAGGTATAGCCTACGTCCTGGGTTGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066465.3
CDS-3UTR TCA 90 bp TTAAGAAAACCTGGGAGATGGCAAGTGTCTAACATCATGTCTCCAGTGTTTCCTGATGACAACTGTTTCTaGTTGTCCATAGCCTTCATG +
Preference number: 4 (lower is better)
Translates to: LRKPGRWQVSNIMSPVFPDDNCF*LSIAFM
Trigger: CATGAAGGCTATGGACAATCAGAAACAGTTGTCATC...AGGAAACACTGGAGACATGATGTTAGACACTTGCCATCTCCCAGGTTTTCTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066465.3
3UTR CAA 72 bp AAGGGTATGACAGTCAATGTTATGTCCCAGATGCTGTaGCCAAATGACTTCATCCAAAGGGTCACATTCATT +
Preference number: 4 (lower is better)
Translates to: KGMTVNVMSQML*PNDFIQRVTFI
Trigger: AATGAATGTGACCCTTTGGATGAAGTCATTTGGCAACAGCATCTGGGACATAACATTGACTGTCATACCCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp TTCTTTATAGTGAGTCCCAAAAGTGTGTCTAAATGGAAGGGTATGACAGTCAATGCACAGGGTGGTTATTaGGAACCTGCAGAGAGTATT +
Preference number: 4 (lower is better)
Translates to: FFIVSPKSVSKWKGMTVNAQGGY*EPAESI
Trigger: AATACTCTCTGCAGGTTCCCAATAACCACCCTGTGC...ATTGACTGTCATACCCTTCCATTTAGACACACTTTTGGGACTCACTATAAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR CCA 90 bp GCTTTGGCAGTTGTGTGTGTTTTCAGTTTTAAGCACTATCTCACTGAATATCTTCTGAATCTCCACTTCTaGTTCTCACACAGTTGTGCT +
Preference number: 4 (lower is better)
Translates to: ALAVVCVFSFKHYLTEYLLNLHF*FSHSCA
Trigger: AGCACAACTGTGTGAGAACCAGAAGTGGAGATTCAG...AAGATATTCAGTGAGATAGTGCTTAAAACTGAAAACACACACAACTGCCAAAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
CDS-3UTR TCA 90 bp TTCTTTATAGTGAGTCCCAAAAGTGTGTCTAAATGGAAGGGTATGACAGTCAATGATGACAACTGTTTCTaGTTGTCCATAGCCTTCATG +
Preference number: 4 (lower is better)
Translates to: FFIVSPKSVSKWKGMTVNDDNCF*LSIAFM
Trigger: CATGAAGGCTATGGACAATCAGAAACAGTTGTCATC...ATTGACTGTCATACCCTTCCATTTAGACACACTTTTGGGACTCACTATAAAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR CAA 90 bp GAAGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGCTGGTGACGATAGACTaGGCCCTGGCAGCCTGCAGC +
Preference number: 5 (lower is better)
Translates to: EGIVLQGGAGLPHFLLLQLVTID*ALAACS
Trigger: GCTGCAGGCTGCCAGGGCCAAGTCTATCGTCACCAG...CTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CAA 90 bp GTCTCCAGTGTTTCCTCACAGCAGCTTCCCAGTGTAGCTTATGTTCCCCCTCCCCTGGTGACGATAGACTaGGCCCTGGCAGCCTGCAGC +
Preference number: 5 (lower is better)
Translates to: VSSVSSQQLPSVAYVPPPLVTID*ALAACS
Trigger: GCTGCAGGCTGCCAGGGCCAAGTCTATCGTCACCAG...GGGAGGGGGAACATAAGCTACACTGGGAAGCTGCTGTGAGGAAACACTGGAGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
CDS-3UTR CAA 90 bp GATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGAACCTCTGGTGACGATAGACTaGGCCCTGGCAGCCTGCAGC +
Preference number: 5 (lower is better)
Translates to: DSTPRRSWPAPLPSPSEPLVTID*ALAACS
Trigger: GCTGCAGGCTGCCAGGGCCAAGTCTATCGTCACCAG...AGGTTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CAA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTCTGGTGACGATAGACTaGGCCCTGGCAGCCTGCAGC +
Preference number: 5 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTLVTID*ALAACS
Trigger: GCTGCAGGCTGCCAGGGCCAAGTCTATCGTCACCAG...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CAA 90 bp GAAGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGCACCAGAAGCTTGGTTaGGAGGGAGGGACAGTCAGC +
Preference number: 5 (lower is better)
Translates to: EGIVLQGGAGLPHFLLLQHQKLG*EGGTVS
Trigger: GCTGACTGTCCCTCCCTCCAAACCAAGCTTCTGGTG...CTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS CCA 90 bp GACCACACCTGTTCGCATACAAGCCACGCTGATCAGCCACCAATCTaGGAGTCTCGGAAGCACCAGCATCATTCTGTCTCCAGGTTGCAG +
Preference number: 5 (lower is better)
Translates to: DHTCSHTSHADQPPI*ESRKHQHHSVSRLQ
Trigger: CTGCAACCTGGAGACAGAATGATGCTGGTGCTTCCGAGACTCCCAGATTGGTGGCTGATCAGCGTGGCTTGTATGCGAACAGGTGTGGTC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207387.2
ENSMUST00000207440.2
ENSMUST00000207796.2
ENSMUST00000207813.2
CDS-3UTR CAA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTCACCAGAAGCTTGGTTaGGAGGGAGGGACAGTCAGC +
Preference number: 5 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTHQKLG*EGGTVS
Trigger: GCTGACTGTCCCTCCCTCCAAACCAAGCTTCTGGTG...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS TCA 90 bp CACAGTTGTGCTCTGGAGAAGCCGCTCTCAGGAGTTCTCGGAAATTaGTCCAGCCTGGACGGCTGGTGTCAGACACCAGAAGCTTGGTTT +
Preference number: 5 (lower is better)
Translates to: HSCALEKPLSGVLGN*SSLDGWCQTPEAWF
Trigger: AAACCAAGCTTCTGGTGTCTGACACCAGCCGTCCAGGCTGGATCAATTTCCGAGAACTCCTGAGAGCGGCTTCTCCAGAGCACAACTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207387.2
ENSMUST00000207440.2
ENSMUST00000207796.2
ENSMUST00000207813.2
CDS GCA 90 bp TGCAGGCCACACACACCCTCTAAGACATTGGCTGCCTTCCTCGACTaGTTCCCCAGCTCCTCAAATGTCCACTTGACTTCTGTTCCTGAG +
Preference number: 5 (lower is better)
Translates to: CRPHTPSKTLAAFLD*FPSSSNVHLTSVPE
Trigger: CTCAGGAACAGAAGTCAAGTGGACATTTGAGGAGCTGGGGAAGCAGTCGAGGAAGGCAGCCAATGTCTTAGAGGGTGTGTGTGGCCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207387.2
ENSMUST00000207440.2
ENSMUST00000207796.2
ENSMUST00000207813.2
CDS CCA 90 bp TCATTCTGTCTCCAGGTTGCAGGCCACACACACCCTCTAAGACATTaGCTGCCTTCCTCGACTGCTTCCCCAGCTCCTCAAATGTCCACT +
Preference number: 5 (lower is better)
Translates to: SFCLQVAGHTHPLRH*LPSSTASPAPQMST
Trigger: AGTGGACATTTGAGGAGCTGGGGAAGCAGTCGAGGAAGGCAGCCAATGTCTTAGAGGGTGTGTGTGGCCTGCAACCTGGAGACAGAATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207387.2
ENSMUST00000207440.2
ENSMUST00000207796.2
ENSMUST00000207813.2
CDS-3UTR CAA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTACACCCTCTAAGACATaGGCTGCCTTCCTCGACTGC +
Preference number: 5 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTTPSKT*AAFLDC
Trigger: GCAGTCGAGGAAGGCAGCCAATGTCTTAGAGGGTGT...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CAA 90 bp CTATTCTTTGAAGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTGCCTGCAGCCGATACTaGAGATCCTTCGCTGTCAGC +
Preference number: 5 (lower is better)
Translates to: LFFEGIVLQGGAGLPHFLACSRY*RSFAVS
Trigger: GCTGACAGCGAAGGATCTCAAGTATCGGCTGCAGGC...AAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCTTCAAAGAATAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CAA 90 bp ATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGAACCTTCTGGTTCTCACACAGTaGTGCTCTGGAGAAGCCGCT +
Preference number: 5 (lower is better)
Translates to: IVLQGGAGLPHFLLLQNLLVLTQ*CSGEAA
Trigger: AGCGGCTTCTCCAGAGCACAACTGTGTGAGAACCAG...AAGGTTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CAA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTCTGGTTCTCACACAGTaGTGCTCTGGAGAAGCCGCT +
Preference number: 5 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTLVLTQ*CSGEAA
Trigger: AGCGGCTTCTCCAGAGCACAACTGTGTGAGAACCAG...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CAA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTGTCTGGCTCTTCCACTaGTCCCTCACATCAGGGTTG +
Preference number: 5 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTVWLFH*SLTSGL
Trigger: CAACCCTGATGTGAGGGACAAGTGGAAGAGCCAGAC...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CAA 90 bp CCTTCAGTGCATCGCAGCATCTCTCTTGGGTTGCATTTCATCTCCCCCACTCTTACACCCTCTAAGACATaGGCTGCCTTCCTCGACTGC +
Preference number: 5 (lower is better)
Translates to: PSVHRSISLGLHFISPTLTPSKT*AAFLDC
Trigger: GCAGTCGAGGAAGGCAGCCAATGTCTTAGAGGGTGT...AAGAGTGGGGGAGATGAAATGCAACCCAAGAGAGATGCTGCGATGCACTGAAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207307.2
CDS-3UTR CAA 90 bp CCTTCAGTGCATCGCAGCATCTCTCTTGGGTTGCATTTCATCTCCCCCACTCTTCTGGTTCTCACACAGTaGTGCTCTGGAGAAGCCGCT +
Preference number: 5 (lower is better)
Translates to: PSVHRSISLGLHFISPTLLVLTQ*CSGEAA
Trigger: AGCGGCTTCTCCAGAGCACAACTGTGTGAGAACCAG...AAGAGTGGGGGAGATGAAATGCAACCCAAGAGAGATGCTGCGATGCACTGAAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207307.2
CDS-3UTR CAA 90 bp TTTGCTGGACTGGGCAGTGTATGTGAGCTCTGGACCAGGGATGCTCTTACATTTACACCCTCTAAGACATaGGCTGCCTTCCTCGACTGC +
Preference number: 5 (lower is better)
Translates to: FAGLGSVCELWTRDALTFTPSKT*AAFLDC
Trigger: GCAGTCGAGGAAGGCAGCCAATGTCTTAGAGGGTGT...AAATGTAAGAGCATCCCTGGTCCAGAGCTCACATACACTGCCCAGTCCAGCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CAA 90 bp GACTTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGATGCACCAGAAGCTTGGTTaGGAGGGAGGGACAGTCAGC +
Preference number: 5 (lower is better)
Translates to: DFIQRVTFIPTGIMRPRMHQKLG*EGGTVS
Trigger: GCTGACTGTCCCTCCCTCCAAACCAAGCTTCTGGTG...CATCCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CAA 90 bp GAAGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTCTCCTTCAGGTCGAGTTTCTTGAATaGCCACAGATGACAACTGTT +
Preference number: 5 (lower is better)
Translates to: EGIVLQGGAGLPHFLLLQVEFLE*PQMTTV
Trigger: AACAGTTGTCATCTGTGGCAATTCAAGAAACTCGAC...CTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207381.2
ENSMUST00000207440.2
CDS-3UTR CAA 90 bp TTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGATGCCCAGGCCATCCACCTCCTaGTTTTCAGACCTCCGAGAC +
Preference number: 5 (lower is better)
Translates to: FIQRVTFIPTGIMRPRMPRPSTS*FSDLRD
Trigger: GTCTCGGAGGTCTGAAAACAAGGAGGTGGATGGCCT...GGGCATCCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207307.2
CDS-3UTR CAA 90 bp TGTGCCGATTTGTCTGTCCCAGGAAAACAGAGTTCTCTTGGTAAAAGCAATGCTCTGGTTCTCACACAGTaGTGCTCTGGAGAAGCCGCT +
Preference number: 5 (lower is better)
Translates to: CADLSVPGKQSSLGKSNALVLTQ*CSGEAA
Trigger: AGCGGCTTCTCCAGAGCACAACTGTGTGAGAACCAG...AGCATTGCTTTTACCAAGAGAACTCTGTTTTCCTGGGACAGACAAATCGGCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CAA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTGTCGAGTTTCTTGAATaGCCACAGATGACAACTGTT +
Preference number: 5 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTVEFLE*PQMTTV
Trigger: AACAGTTGTCATCTGTGGCAATTCAAGAAACTCGAC...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CAA 90 bp TTAAGAAAACCTGGGAGATGGCAAGTGTCTAACATCATGTCTCCAGTGTTTCCTACACCCTCTAAGACATaGGCTGCCTTCCTCGACTGC +
Preference number: 5 (lower is better)
Translates to: LRKPGRWQVSNIMSPVFPTPSKT*AAFLDC
Trigger: GCAGTCGAGGAAGGCAGCCAATGTCTTAGAGGGTGT...AGGAAACACTGGAGACATGATGTTAGACACTTGCCATCTCCCAGGTTTTCTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
CDS-3UTR CAA 90 bp GCATCCAAATGCCCTTGTGTAGCAGGAAGTGACAGGTGTCCTTCCTGGGGTACTATTGGAACTTGTACCTaGTCAGATCCTCTTGTACAA +
Preference number: 5 (lower is better)
Translates to: ASKCPCVAGSDRCPSWGTIGTCT*SDPLVQ
Trigger: TTGTACAAGAGGATCTGACAAGGTACAAGTTCCAAT...AGTACCCCAGGAAGGACACCTGTCACTTCCTGCTACACAAGGGCATTTGGATGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2
CDS-3UTR CAA 90 bp AAGGTTGAGGTTACAGATGTGCATAGCCACAGATGGCTTTTACATAGCTATCAGGTCTGGCTCTTCCACTaGTCCCTCACATCAGGGTTG +
Preference number: 5 (lower is better)
Translates to: KVEVTDVHSHRWLLHSYQVWLFH*SLTSGL
Trigger: CAACCCTGATGTGAGGGACAAGTGGAAGAGCCAGAC...CTGATAGCTATGTAAAAGCCATCTGTGGCTATGCACATCTGTAACCTCAACCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066465.3
CDS-3UTR CAA 90 bp CTATTCTTTGAAGGGATAGTACTCCAAGGAGGAGCTGGCCTGCCCCACTTCCTTGTCGAGTTTCTTGAATaGCCACAGATGACAACTGTT +
Preference number: 5 (lower is better)
Translates to: LFFEGIVLQGGAGLPHFLVEFLE*PQMTTV
Trigger: AACAGTTGTCATCTGTGGCAATTCAAGAAACTCGAC...AAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCTTCAAAGAATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207381.2
ENSMUST00000207440.2
CDS-3UTR CAA 90 bp TTCTTTATAGTGAGTCCCAAAAGTGTGTCTAAATGGAAGGGTATGACAGTCAATCACCAGAAGCTTGGTTaGGAGGGAGGGACAGTCAGC +
Preference number: 5 (lower is better)
Translates to: FFIVSPKSVSKWKGMTVNHQKLG*EGGTVS
Trigger: GCTGACTGTCCCTCCCTCCAAACCAAGCTTCTGGTG...ATTGACTGTCATACCCTTCCATTTAGACACACTTTTGGGACTCACTATAAAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207440.2
CDS-3UTR CAA 90 bp TTCATCCAAAGGGTCACATTCATTCCCACTGGCATAATGAGACCAAGGATGCCCATTGGAACTTGTACCTaGTCAGATCCTCTTGTACAA +
Preference number: 5 (lower is better)
Translates to: FIQRVTFIPTGIMRPRMPIGTCT*SDPLVQ
Trigger: TTGTACAAGAGGATCTGACAAGGTACAAGTTCCAAT...GGGCATCCTTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR CAA 90 bp TTCTTTATAGTGAGTCCCAAAAGTGTGTCTAAATGGAAGGGTATGACAGTCAATGTCTGGCTCTTCCACTaGTCCCTCACATCAGGGTTG +
Preference number: 5 (lower is better)
Translates to: FFIVSPKSVSKWKGMTVNVWLFH*SLTSGL
Trigger: CAACCCTGATGTGAGGGACAAGTGGAAGAGCCAGAC...ATTGACTGTCATACCCTTCCATTTAGACACACTTTTGGGACTCACTATAAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066465.3
ENSMUST00000207440.2
CDS-3UTR CAA 90 bp GCTTTGGCAGTTGTGTGTGTTTTCAGTTTTAAGCACTATCTCACTGAATATCTTATTGGAACTTGTACCTaGTCAGATCCTCTTGTACAA +
Preference number: 5 (lower is better)
Translates to: ALAVVCVFSFKHYLTEYLIGTCT*SDPLVQ
Trigger: TTGTACAAGAGGATCTGACAAGGTACAAGTTCCAAT...AAGATATTCAGTGAGATAGTGCTTAAAACTGAAAACACACACAACTGCCAAAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066465.3
CDS GCA 72 bp CAGGGATCGGGGGAGGTGGTGGCTGTGTGTGAATCCTaGAGACTCCCCAGGAACTCCTCAGAGCCTGGCAGG +
Preference number: 6 (lower is better)
Translates to: QGSGEVVAVCES*RLPRNSSEPGR
Trigger: CCTGCCAGGCTCTGAGGAGTTCCTGGGGAGTCTGCAGGATTCACACACAGCCACCACCTCCCCCGATCCCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207381.2
ENSMUST00000207387.2
ENSMUST00000207440.2
ENSMUST00000207796.2
ENSMUST00000207813.2
CDS TCA 72 bp ACCACCTCAGGGATCGGGGGAGGTGGTGGCTGTGTGTaGATCCTGCAGACTCCCCAGGAACTCCTCAGAGCC +
Preference number: 6 (lower is better)
Translates to: TTSGIGGGGGCV*ILQTPQELLRA
Trigger: GGCTCTGAGGAGTTCCTGGGGAGTCTGCAGGATTCACACACAGCCACCACCTCCCCCGATCCCTGAGGTGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207381.2
ENSMUST00000207387.2
ENSMUST00000207440.2
ENSMUST00000207796.2
ENSMUST00000207813.2
CDS CAA 72 bp CTGTTCCTGAGCCGTTCACCCACCAGAATGCAGGATTaGGGGGCCGGTGCCCTGTCTTTTCCAGCTGACTCC +
Preference number: 6 (lower is better)
Translates to: LFLSRSPTRMQD*GAGALSFPADS
Trigger: GGAGTCAGCTGGAAAAGACAGGGCACCGGCCCCCAAATCCTGCATTCTGGTGGGTGAACGGCTCAGGAACAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207387.2
ENSMUST00000207440.2
ENSMUST00000207796.2
ENSMUST00000207813.2
CDS CAA 90 bp ATGGCATCCACTTGCGGAGCTAGGGCATCACTGGTGACGATAGACTaGGCCCTGGCAGCCTGCAGCCGATACTTGAGATCCTTCGCTGTC +
Preference number: 6 (lower is better)
Translates to: MASTCGARASLVTID*ALAACSRYLRSFAV
Trigger: GACAGCGAAGGATCTCAAGTATCGGCTGCAGGCTGCCAGGGCCAAGTCTATCGTCACCAGTGATGCCCTAGCTCCGCAAGTGGATGCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207387.2
ENSMUST00000207440.2
ENSMUST00000207796.2
ENSMUST00000207813.2
CDS TCA 72 bp CCAGAAGCTTGGTTTGGAGGGAGGGACAGTCAGCACTaGTGGCATCCACTTGCGGAGCTAGGGCATCACTGG +
Preference number: 6 (lower is better)
Translates to: PEAWFGGRDSQH*WHPLAELGHHW
Trigger: CCAGTGATGCCCTAGCTCCGCAAGTGGATGCCATCAGTGCTGACTGTCCCTCCCTCCAAACCAAGCTTCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207387.2
ENSMUST00000207440.2
ENSMUST00000207796.2
ENSMUST00000207813.2
CDS CAA 72 bp ACTTGCGGAGCTAGGGCATCACTGGTGACGATAGACTaGGCCCTGGCAGCCTGCAGCCGATACTTGAGATCC +
Preference number: 6 (lower is better)
Translates to: TCGARASLVTID*ALAACSRYLRS
Trigger: GGATCTCAAGTATCGGCTGCAGGCTGCCAGGGCCAAGTCTATCGTCACCAGTGATGCCCTAGCTCCGCAAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207387.2
ENSMUST00000207440.2
ENSMUST00000207796.2
ENSMUST00000207813.2
CDS CCA 72 bp AGCCGCTCTCAGGAGTTCTCGGAAATTGATCCAGCCTaGACGGCTGGTGTCAGACACCAGAAGCTTGGTTTG +
Preference number: 6 (lower is better)
Translates to: SRSQEFSEIDPA*TAGVRHQKLGL
Trigger: CAAACCAAGCTTCTGGTGTCTGACACCAGCCGTCCAGGCTGGATCAATTTCCGAGAACTCCTGAGAGCGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207387.2
ENSMUST00000207440.2
ENSMUST00000207796.2
ENSMUST00000207813.2
CDS CAA 90 bp ACACAGTTGTGCTCTGGAGAAGCCGCTCTCAGGAGTTCTCGGAAATaGATCCAGCCTGGACGGCTGGTGTCAGACACCAGAAGCTTGGTT +
Preference number: 6 (lower is better)
Translates to: TQLCSGEAALRSSRK*IQPGRLVSDTRSLV
Trigger: AACCAAGCTTCTGGTGTCTGACACCAGCCGTCCAGGCTGGATCAATTTCCGAGAACTCCTGAGAGCGGCTTCTCCAGAGCACAACTGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207387.2
ENSMUST00000207440.2
ENSMUST00000207796.2
ENSMUST00000207813.2
CDS TCA 72 bp TCCTCGACTGCTTCCCCAGCTCCTCAAATGTCCACTTaGCTTCTGTTCCTGAGCCGTTCACCCACCAGAATG +
Preference number: 6 (lower is better)
Translates to: SSTASPAPQMST*LLFLSRSPTRM
Trigger: CATTCTGGTGGGTGAACGGCTCAGGAACAGAAGTCAAGTGGACATTTGAGGAGCTGGGGAAGCAGTCGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207387.2
ENSMUST00000207440.2
ENSMUST00000207796.2
ENSMUST00000207813.2
CDS CCA 72 bp TGTTCGCATACAAGCCACGCTGATCAGCCACCAATCTaGGAGTCTCGGAAGCACCAGCATCATTCTGTCTCC +
Preference number: 6 (lower is better)
Translates to: CSHTSHADQPPI*ESRKHQHHSVS
Trigger: GGAGACAGAATGATGCTGGTGCTTCCGAGACTCCCAGATTGGTGGCTGATCAGCGTGGCTTGTATGCGAACA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207387.2
ENSMUST00000207440.2
ENSMUST00000207796.2
ENSMUST00000207813.2
CDS CAA 72 bp ATGGCCACTGAATCTCCACTTCTGGTTCTCACACAGTaGTGCTCTGGAGAAGCCGCTCTCAGGAGTTCTCGG +
Preference number: 6 (lower is better)
Translates to: MATESPLLVLTQ*CSGEAALRSSR
Trigger: CCGAGAACTCCTGAGAGCGGCTTCTCCAGAGCACAACTGTGTGAGAACCAGAAGTGGAGATTCAGTGGCCAT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207387.2
ENSMUST00000207440.2
ENSMUST00000207796.2
ENSMUST00000207813.2
CDS GCA 72 bp CACACACCCTCTAAGACATTGGCTGCCTTCCTCGACTaGTTCCCCAGCTCCTCAAATGTCCACTTGACTTCT +
Preference number: 6 (lower is better)
Translates to: HTPSKTLAAFLD*FPSSSNVHLTS
Trigger: AGAAGTCAAGTGGACATTTGAGGAGCTGGGGAAGCAGTCGAGGAAGGCAGCCAATGTCTTAGAGGGTGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000066465.3
ENSMUST00000207307.2
ENSMUST00000207387.2
ENSMUST00000207440.2
ENSMUST00000207796.2
ENSMUST00000207813.2
CDS CCA 72 bp GAAGCCCACACTGATTCCCATAAGATGCAAAGACACTaGAGGAAGTACCTTCCCAATGACAATAGCCATTTA +
Preference number: 6 (lower is better)
Translates to: EAHTDSHKMQRH*RKYLPNDNSHL
Trigger: TAAATGGCTATTGTCATTGGGAAGGTACTTCCTCCAGTGTCTTTGCATCTTATGGGAATCAGTGTGGGCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207796.2