Pregenerated sensors for ACSM4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047026

Ensembl transcript IDs: ENSMUST00000047045.10

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CATTCAGGGATACGGGGCAGAATCACAGCCACCCGGTCTCCTCTCTaGAGGCCGCAGGGCTTGGTGAGCACATTGGCAGCCTTTCGGGAC	+
Preference number: 5 (lower is better) Translates to: HSGIRGRITATRSPL*RPQGLVSTLAAFRD Trigger: GTCCCGAAAGGCTGCCAATGTGCTCACCAAGCCCTGCGGCCTGCAGAGAGGAGACCGGGTGGCTGTGATTCTGCCCCGTATCCCTGAATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047045.10
CDS TCA 90 bp	GAATCACAGCCACCCGGTCTCCTCTCTGCAGGCCGCAGGGCTTGGTaGGCACATTGGCAGCCTTTCGGGACAAGGAACCCAGTTCTTGGA	+
Preference number: 5 (lower is better) Translates to: ESQPPGLLSAGRRAW*AHWQPFGTRNPVLG Trigger: TCCAAGAACTGGGTTCCTTGTCCCGAAAGGCTGCCAATGTGCTCACCAAGCCCTGCGGCCTGCAGAGAGGAGACCGGGTGGCTGTGATTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047045.10
CDS CCA 90 bp	CAGAGGTGCCCAGAGCTGGGAATCTCTGTGGAAGTGCCGGCCGGCTaGCTTGGCAAGCCAGATGAATCTAAGTCTCTGACAGTGGAGGAG	+
Preference number: 5 (lower is better) Translates to: QRCPELGISVEVPAG*LGKPDESKSLTVEE Trigger: CTCCTCCACTGTCAGAGACTTAGATTCATCTGGCTTGCCAAGCCAGCCGGCCGGCACTTCCACAGAGATTCCCAGCTCTGGGCACCTCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047045.10
CDS CCA 90 bp	CGATTGATGGCTTCAAAGTCATCCAGTGTCAGAGGTGCCCAGAGCTaGGAATCTCTGTGGAAGTGCCGGCCGGCTGGCTTGGCAAGCCAG	+
Preference number: 5 (lower is better) Translates to: RLMASKSSSVRGAQS*ESLWKCRPAGLASQ Trigger: CTGGCTTGCCAAGCCAGCCGGCCGGCACTTCCACAGAGATTCCCAGCTCTGGGCACCTCTGACACTGGATGACTTTGAAGCCATCAATCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047045.10
CDS GCA 90 bp	AGGATGTCAAGTCCAGCCAGTACCTTCCACAAAGGGTATACCCAATaGCAAGGCTGCCCTGTGAGTGCTGAGCCATCTTGGGGGAGCCTG	+
Preference number: 5 (lower is better) Translates to: RMSSPASTFHKGYTQ*QGCPVSAEPSWGSL Trigger: CAGGCTCCCCCAAGATGGCTCAGCACTCACAGGGCAGCCTTGGCATTGGGTATACCCTTTGTGGAAGGTACTGGCTGGACTTGACATCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047045.10
CDS CCA 90 bp	TCAAAGTCATCCAGTGTCAGAGGTGCCCAGAGCTGGGAATCTCTGTaGAAGTGCCGGCCGGCTGGCTTGGCAAGCCAGATGAATCTAAGT	+
Preference number: 5 (lower is better) Translates to: SKSSSVRGAQSWESL*KCRPAGLASQMNLS Trigger: ACTTAGATTCATCTGGCTTGCCAAGCCAGCCGGCCGGCACTTCCACAGAGATTCCCAGCTCTGGGCACCTCTGACACTGGATGACTTTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047045.10
CDS GCA 72 bp	ATACGGGGCAGAATCACAGCCACCCGGTCTCCTCTCTaGAGGCCGCAGGGCTTGGTGAGCACATTGGCAGCC	+
Preference number: 6 (lower is better) Translates to: IRGRITATRSPL*RPQGLVSTLAA Trigger: GGCTGCCAATGTGCTCACCAAGCCCTGCGGCCTGCAGAGAGGAGACCGGGTGGCTGTGATTCTGCCCCGTAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047045.10
CDS CCA 72 bp	TCCAGTGTCAGAGGTGCCCAGAGCTGGGAATCTCTGTaGAAGTGCCGGCCGGCTGGCTTGGCAAGCCAGATG	+
Preference number: 6 (lower is better) Translates to: SSVRGAQSWESL*KCRPAGLASQM Trigger: CATCTGGCTTGCCAAGCCAGCCGGCCGGCACTTCCACAGAGATTCCCAGCTCTGGGCACCTCTGACACTGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047045.10
CDS CAA 72 bp	ACAGCCACCCGGTCTCCTCTCTGCAGGCCGCAGGGCTaGGTGAGCACATTGGCAGCCTTTCGGGACAAGGAA	+
Preference number: 6 (lower is better) Translates to: TATRSPLCRPQG*VSTLAAFRDKE Trigger: TTCCTTGTCCCGAAAGGCTGCCAATGTGCTCACCAAGCCCTGCGGCCTGCAGAGAGGAGACCGGGTGGCTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047045.10
CDS CAA 90 bp	GGCAGAATCACAGCCACCCGGTCTCCTCTCTGCAGGCCGCAGGGCTaGGTGAGCACATTGGCAGCCTTTCGGGACAAGGAACCCAGTTCT	+
Preference number: 6 (lower is better) Translates to: GRITATRSPLCRPQG*VSTLAAFRDKEPSS Trigger: AGAACTGGGTTCCTTGTCCCGAAAGGCTGCCAATGTGCTCACCAAGCCCTGCGGCCTGCAGAGAGGAGACCGGGTGGCTGTGATTCTGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047045.10
CDS GCA 72 bp	GTCAGAGGTGCCCAGAGCTGGGAATCTCTGTGGAAGTaGCGGCCGGCTGGCTTGGCAAGCCAGATGAATCTA	+
Preference number: 6 (lower is better) Translates to: VRGAQSWESLWK*RPAGLASQMNL Trigger: TAGATTCATCTGGCTTGCCAAGCCAGCCGGCCGGCACTTCCACAGAGATTCCCAGCTCTGGGCACCTCTGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047045.10
CDS GCA 72 bp	AGTACCTTCCACAAAGGGTATACCCAATGCCAAGGCTaGCCTGTGAGTGCTGAGCCATCTTGGGGGAGCCTG	+
Preference number: 6 (lower is better) Translates to: STFHKGYTQCQG*PVSAEPSWGSL Trigger: CAGGCTCCCCCAAGATGGCTCAGCACTCACAGGGCAGCCTTGGCATTGGGTATACCCTTTGTGGAAGGTACT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047045.10
CDS GCA 72 bp	AGTCCAGCCAGTACCTTCCACAAAGGGTATACCCAATaGCAAGGCTGCCCTGTGAGTGCTGAGCCATCTTGG	+
Preference number: 6 (lower is better) Translates to: SPASTFHKGYTQ*QGCPVSAEPSW Trigger: CCAAGATGGCTCAGCACTCACAGGGCAGCCTTGGCATTGGGTATACCCTTTGTGGAAGGTACTGGCTGGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047045.10
CDS CAA 72 bp	GGCATGAATACAAGCCCTGTTCTCATGCAAGCCACATaGATGAGCCACCATTCAGGGATACGGGGCAGAATC	+
Preference number: 6 (lower is better) Translates to: GMNTSPVLMQAT*MSHHSGIRGRI Trigger: GATTCTGCCCCGTATCCCTGAATGGTGGCTCATCAATGTGGCTTGCATGAGAACAGGGCTTGTATTCATGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047045.10
CDS CAA 90 bp	TCTGCTGCAAAGTTAAAGTTCTTGGGTAATGGCTTCTCACAGCGATaGATGGCTTCAAAGTCATCCAGTGTCAGAGGTGCCCAGAGCTGG	+
Preference number: 6 (lower is better) Translates to: SAAKLKFLGNGFSQR*MASKSSSVRGAQSW Trigger: CCAGCTCTGGGCACCTCTGACACTGGATGACTTTGAAGCCATCAATCGCTGTGAGAAGCCATTACCCAAGAACTTTAACTTTGCAGCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047045.10
CDS CCA 72 bp	GTAGAGGATGTCTTTTCTGGTCAGTTGGATCGTTCCTaGCATGAATACAAGCCCTGTTCTCATGCAAGCCAC	+
Preference number: 6 (lower is better) Translates to: VEDVFSGQLDRS*HEYKPCSHASH Trigger: GTGGCTTGCATGAGAACAGGGCTTGTATTCATGCCAGGAACGATCCAACTGACCAGAAAAGACATCCTCTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047045.10
CDS CCA 72 bp	CACATCGTACGGCACTACTCCTTTTCCCATGGAACCTaGTTTAATTGCTTCTCCTTTGCGATTGGCGCAAAT	+
Preference number: 6 (lower is better) Translates to: HIVRHYSFSHGT*FNCFSFAIGAN Trigger: ATTTGCGCCAATCGCAAAGGAGAAGCAATTAAACCAGGTTCCATGGGAAAAGGAGTAGTGCCGTACGATGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047045.10
CDS CAA 90 bp	TTTAGGGACCACTGGTCCAGAACATCTGCTGCAAAGTTAAAGTTCTaGGGTAATGGCTTCTCACAGCGATTGATGGCTTCAAAGTCATCC	+
Preference number: 6 (lower is better) Translates to: FRDHWSRTSAAKLKF*GNGFSQRLMASKSS Trigger: GGATGACTTTGAAGCCATCAATCGCTGTGAGAAGCCATTACCCAAGAACTTTAACTTTGCAGCAGATGTTCTGGACCAGTGGTCCCTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047045.10
CDS CAA 72 bp	AAGTTAAAGTTCTTGGGTAATGGCTTCTCACAGCGATaGATGGCTTCAAAGTCATCCAGTGTCAGAGGTGCC	+
Preference number: 6 (lower is better) Translates to: KLKFLGNGFSQR*MASKSSSVRGA Trigger: GGCACCTCTGACACTGGATGACTTTGAAGCCATCAATCGCTGTGAGAAGCCATTACCCAAGAACTTTAACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047045.10
CDS CAA 72 bp	CACTGGTCCAGAACATCTGCTGCAAAGTTAAAGTTCTaGGGTAATGGCTTCTCACAGCGATTGATGGCTTCA	+
Preference number: 6 (lower is better) Translates to: HWSRTSAAKLKF*GNGFSQRLMAS Trigger: TGAAGCCATCAATCGCTGTGAGAAGCCATTACCCAAGAACTTTAACTTTGCAGCAGATGTTCTGGACCAGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047045.10