RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ACSF3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000015016

Ensembl transcript IDs: ENSMUST00000015160.6, ENSMUST00000212781.2, ENSMUST00000212790.2

Found 212 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CACAGGCCCAGGCAATCCCAGGCTTTGGGAGGCCCTGCAGTAAGGTaGGAGGCACTCAGGCAGTCCTCAGGGCTGCGAAGCCCAGGCCAT +
Preference number: 1 (lower is better)
Translates to: HRPRQSQALGGPAVR*EALRQSSGLRSPGH
Trigger: ATGGCCTGGGCTTCGCAGCCCTGAGGACTGCCTGAGTGCCTCGCACCTTACTGCAGGGCCTCCCAAAGCCTGGGATTGCCTGGGCCTGTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
3UTR CCA 90 bp GGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGAGCTaGCCACAGCCGTGTCCTTACTGTGCTTGTGAGACTGGCACACAC +
Preference number: 1 (lower is better)
Translates to: GTCPQERQQPRALES*PQPCPYCACETGTH
Trigger: GTGTGTGCCAGTCTCACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR CCA 90 bp GACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTaGAGAGCTGGCCACAGCCGTGTCCTTACTGTGCTTGTGAGACTG +
Preference number: 1 (lower is better)
Translates to: DSLGPALRRGSSPGH*RAGHSRVLTVLVRL
Trigger: CAGTCTCACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR TCA 90 bp CCGGGCACTGGAGAGCTGGCCACAGCCGTGTCCTTACTGTGCTTGTaGGACTGGCACACACCAGTGATCTCAAGGACCACTGAGGACACA +
Preference number: 1 (lower is better)
Translates to: PGTGELATAVSLLCL*DWHTPVISRTTEDT
Trigger: TGTGTCCTCAGTGGTCCTTGAGATCACTGGTGTGTGCCAGTCTCACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCTCCAGTGCCCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR CCA 90 bp GGTGTGTCTTTATTTCACCTCTTCTCACTGTCACCTCTGACTCTCTaGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGAG +
Preference number: 1 (lower is better)
Translates to: GVSLFHLFSLSPLTL*DLPSGEAAAPGTGE
Trigger: CTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGGTGACAGTGAGAAGAGGTGAAATAAAGACACACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR CCA 90 bp AAACCCCCAAGATCTACAAGAACCAGGGAGAATCCGTCCCTGCCCTaGGTTAAGAAGGGAGCTGTGGGCACAGGCCCAGGCAATCCCAGG +
Preference number: 1 (lower is better)
Translates to: KPPRSTRTRENPSLP*VKKGAVGTGPGNPR
Trigger: CCTGGGATTGCCTGGGCCTGTGCCCACAGCTCCCTTCTTAACCCAGGGCAGGGACGGATTCTCCCTGGTTCTTGTAGATCTTGGGGGTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
3UTR TCA 90 bp CCACAGCCGTGTCCTTACTGTGCTTGTGAGACTGGCACACACCAGTaGTCTCAAGGACCACTGAGGACACAGCCAGTGGTCAGGGTCACC +
Preference number: 1 (lower is better)
Translates to: PQPCPYCACETGTHQ*SQGPLRTQPVVRVT
Trigger: GGTGACCCTGACCACTGGCTGTGTCCTCAGTGGTCCTTGAGATCACTGGTGTGTGCCAGTCTCACAAGCACAGTAAGGACACGGCTGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR TCA 90 bp CACTACACGGTGTGTCTTTATTTCACCTCTTCTCACTGTCACCTCTaGCTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCA +
Preference number: 1 (lower is better)
Translates to: HYTVCLYFTSSHCHL*LSGTCPQERQQPRA
Trigger: TGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGGTGACAGTGAGAAGAGGTGAAATAAAGACACACCGTGTAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR TCA 90 bp ACTGTGCTTGTGAGACTGGCACACACCAGTGATCTCAAGGACCACTaGGGACACAGCCAGTGGTCAGGGTCACCTGGGCTTGGACAATCA +
Preference number: 1 (lower is better)
Translates to: TVLVRLAHTSDLKDH*GHSQWSGSPGLGQS
Trigger: TGATTGTCCAAGCCCAGGTGACCCTGACCACTGGCTGTGTCCTCAGTGGTCCTTGAGATCACTGGTGTGTGCCAGTCTCACAAGCACAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR TCA 90 bp AGAGGCAGGCGGATCTCTGAGTTGGAGGCCACCTGGTGTACAGAGTaGGTTCCAGGACAACCAGGGCTACAGAGAAACCCTGTCTCAACA +
Preference number: 1 (lower is better)
Translates to: RGRRISELEATWCTE*VPGQPGLQRNPVST
Trigger: TGTTGAGACAGGGTTTCTCTGTAGCCCTGGTTGTCCTGGAACTCACTCTGTACACCAGGTGGCCTCCAACTCAGAGATCCGCCTGCCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
3UTR TCA 90 bp ACCTGGGCTTGGACAATCAGCCTGGGGTTGAGGGAACTCACTTGGTaGTTCGTCCCTAGAGGTTTTGATTCCGGTCAACCTGATTGCAGG +
Preference number: 1 (lower is better)
Translates to: TWAWTISLGLRELTW*FVPRGFDSGQPDCR
Trigger: CCTGCAATCAGGTTGACCGGAATCAAAACCTCTAGGGACGAATCACCAAGTGAGTTCCCTCAACCCCAGGCTGATTGTCCAAGCCCAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR-3UTR TCA 90 bp CCTCTTCTCACTGTCACCTCTGACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCGATCTCAAGGACCACTaGGGACACAGCCAGTGGTCA +
Preference number: 2 (lower is better)
Translates to: PLLTVTSDSLGPALRRGSDLKDH*GHSQWS
Trigger: TGACCACTGGCTGTGTCCTCAGTGGTCCTTGAGATC...GCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGGTGACAGTGAGAAGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR-3UTR GCA 90 bp GAGAGCTGGCCACAGCCGTGTCCTTACTGTGCTTGTGAGACTGGCACACACCAGTCCGGTCAACCTGATTaGAGGAGGGGAGGGGTTCCA +
Preference number: 2 (lower is better)
Translates to: ESWPQPCPYCACETGTHQSGQPD*RRGGVP
Trigger: TGGAACCCCTCCCCTCCTGCAATCAGGTTGACCGGA...CTGGTGTGTGCCAGTCTCACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR-3UTR GCA 90 bp GACTGGCACACACCAGTGATCTCAAGGACCACTGAGGACACAGCCAGTGGTCAGTCCGGTCAACCTGATTaGAGGAGGGGAGGGGTTCCA +
Preference number: 2 (lower is better)
Translates to: DWHTPVISRTTEDTASGQSGQPD*RRGGVP
Trigger: TGGAACCCCTCCCCTCCTGCAATCAGGTTGACCGGA...CTGACCACTGGCTGTGTCCTCAGTGGTCCTTGAGATCACTGGTGTGTGCCAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR CAA 90 bp TCAAGGACCACTGAGGACACAGCCAGTGGTCAGGGTCACCTGGGCTaGGACAATCAGCCTGGGGTTGAGGGAACTCACTTGGTGATTCGT +
Preference number: 2 (lower is better)
Translates to: SRTTEDTASGQGHLG*DNQPGVEGTHLVIR
Trigger: ACGAATCACCAAGTGAGTTCCCTCAACCCCAGGCTGATTGTCCAAGCCCAGGTGACCCTGACCACTGGCTGTGTCCTCAGTGGTCCTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR CCA 72 bp GGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTaGAGAGCTGGCCACAGCCGTGTCCTTACTGTGCTT +
Preference number: 3 (lower is better)
Translates to: GPALRRGSSPGH*RAGHSRVLTVL
Trigger: AAGCACAGTAAGGACACGGCTGTGGCCAGCTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR GCA 72 bp GCACAGGCCCAGGCAATCCCAGGCTTTGGGAGGCCCTaGAGTAAGGTGCGAGGCACTCAGGCAGTCCTCAGG +
Preference number: 3 (lower is better)
Translates to: AQAQAIPGFGRP*SKVRGTQAVLR
Trigger: CCTGAGGACTGCCTGAGTGCCTCGCACCTTACTGCAGGGCCTCCCAAAGCCTGGGATTGCCTGGGCCTGTGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
3UTR GCA 72 bp AGGCAATCCCAGGCTTTGGGAGGCCCTGCAGTAAGGTaGGAGGCACTCAGGCAGTCCTCAGGGCTGCGAAGC +
Preference number: 3 (lower is better)
Translates to: RQSQALGGPAVR*EALRQSSGLRS
Trigger: GCTTCGCAGCCCTGAGGACTGCCTGAGTGCCTCGCACCTTACTGCAGGGCCTCCCAAAGCCTGGGATTGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
3UTR CCA 72 bp CCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGAGCTaGCCACAGCCGTGTCCTTACTGTGCTTGTGAGACT +
Preference number: 3 (lower is better)
Translates to: PQERQQPRALES*PQPCPYCACET
Trigger: AGTCTCACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR CCA 72 bp AGAATCCGTCCCTGCCCTGGGTTAAGAAGGGAGCTGTaGGCACAGGCCCAGGCAATCCCAGGCTTTGGGAGG +
Preference number: 3 (lower is better)
Translates to: RIRPCPGLRREL*AQAQAIPGFGR
Trigger: CCTCCCAAAGCCTGGGATTGCCTGGGCCTGTGCCCACAGCTCCCTTCTTAACCCAGGGCAGGGACGGATTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
3UTR CCA 72 bp GGACCACTGAGGACACAGCCAGTGGTCAGGGTCACCTaGGCTTGGACAATCAGCCTGGGGTTGAGGGAACTC +
Preference number: 3 (lower is better)
Translates to: GPLRTQPVVRVT*AWTISLGLREL
Trigger: GAGTTCCCTCAACCCCAGGCTGATTGTCCAAGCCCAGGTGACCCTGACCACTGGCTGTGTCCTCAGTGGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR GCA 72 bp CCCCAAGATCTACAAGAACCAGGGAGAATCCGTCCCTaGCCTGGGTTAAGAAGGGAGCTGTGGGCACAGGCC +
Preference number: 3 (lower is better)
Translates to: PQDLQEPGRIRP*PGLRRELWAQA
Trigger: GGCCTGTGCCCACAGCTCCCTTCTTAACCCAGGGCAGGGACGGATTCTCCCTGGTTCTTGTAGATCTTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
3UTR CCA 72 bp CTGAGGACACAGCCAGTGGTCAGGGTCACCTGGGCTTaGACAATCAGCCTGGGGTTGAGGGAACTCACTTGG +
Preference number: 3 (lower is better)
Translates to: LRTQPVVRVTWA*TISLGLRELTW
Trigger: CCAAGTGAGTTCCCTCAACCCCAGGCTGATTGTCCAAGCCCAGGTGACCCTGACCACTGGCTGTGTCCTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR CCA 72 bp TTATTTCACCTCTTCTCACTGTCACCTCTGACTCTCTaGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGC +
Preference number: 3 (lower is better)
Translates to: LFHLFSLSPLTL*DLPSGEAAAPG
Trigger: GCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGGTGACAGTGAGAAGAGGTGAAATAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR TCA 72 bp GTGAGACTGGCACACACCAGTGATCTCAAGGACCACTaGGGACACAGCCAGTGGTCAGGGTCACCTGGGCTT +
Preference number: 3 (lower is better)
Translates to: VRLAHTSDLKDH*GHSQWSGSPGL
Trigger: AAGCCCAGGTGACCCTGACCACTGGCTGTGTCCTCAGTGGTCCTTGAGATCACTGGTGTGTGCCAGTCTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR TCA 72 bp CGGATCTCTGAGTTGGAGGCCACCTGGTGTACAGAGTaGGTTCCAGGACAACCAGGGCTACAGAGAAACCCT +
Preference number: 3 (lower is better)
Translates to: RISELEATWCTE*VPGQPGLQRNP
Trigger: AGGGTTTCTCTGTAGCCCTGGTTGTCCTGGAACTCACTCTGTACACCAGGTGGCCTCCAACTCAGAGATCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
3UTR TCA 72 bp ATCATAGCACTTGAGGAGCAGAGGCAGGCGGATCTCTaGGTTGGAGGCCACCTGGTGTACAGAGTGAGTTCC +
Preference number: 3 (lower is better)
Translates to: IIALEEQRQADL*VGGHLVYRVSS
Trigger: GGAACTCACTCTGTACACCAGGTGGCCTCCAACTCAGAGATCCGCCTGCCTCTGCTCCTCAAGTGCTATGAT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
3UTR TCA 72 bp TGTCCTTACTGTGCTTGTGAGACTGGCACACACCAGTaGTCTCAAGGACCACTGAGGACACAGCCAGTGGTC +
Preference number: 3 (lower is better)
Translates to: CPYCACETGTHQ*SQGPLRTQPVV
Trigger: GACCACTGGCTGTGTCCTCAGTGGTCCTTGAGATCACTGGTGTGTGCCAGTCTCACAAGCACAGTAAGGACA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR TCA 72 bp TGGACAATCAGCCTGGGGTTGAGGGAACTCACTTGGTaGTTCGTCCCTAGAGGTTTTGATTCCGGTCAACCT +
Preference number: 3 (lower is better)
Translates to: WTISLGLRELTW*FVPRGFDSGQP
Trigger: AGGTTGACCGGAATCAAAACCTCTAGGGACGAATCACCAAGTGAGTTCCCTCAACCCCAGGCTGATTGTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR GCA 72 bp TTCTGCCTCAGACTATCACTGTCTCCCAACTCGGTTTaGAGCAGAGGCCCTTCCTACTGCCAAGTCTACATT +
Preference number: 3 (lower is better)
Translates to: FCLRLSLSPNSV*SRGPSYCQVYI
Trigger: AATGTAGACTTGGCAGTAGGAAGGGCCTCTGCTGCAAACCGAGTTGGGAGACAGTGATAGTCTGAGGCAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR GCA 90 bp TGTGGGCACAGGCCCAGGCAATCCCAGGCTTTGGGAGGCCCTGCAGTAAGGTGCGGGTGGGCCAGCAGGTaGCGCTCGATCTCCAGGGCG +
Preference number: 4 (lower is better)
Translates to: CGHRPRQSQALGGPAVRCGWASR*RSISRA
Trigger: CGCCCTGGAGATCGAGCGGCACCTGCTGGCCCACCC...GCACCTTACTGCAGGGCCTCCCAAAGCCTGGGATTGCCTGGGCCTGTGCCCACA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CCA 90 bp CCTCTGACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGCAGCGTGTGGCCCGTaGCGCTCCTCCACTTCTCCA +
Preference number: 4 (lower is better)
Translates to: PLTLWDLPSGEAAAPGTGAACGP*RSSTSP
Trigger: TGGAGAAGTGGAGGAGCGCCACGGGCCACACGCTGC...TCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp CTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGAGCTGGCCACCTTCTGGGAATCAGCTaGCTGGAGGCCAAGGACCAG +
Preference number: 4 (lower is better)
Translates to: LGPALRRGSSPGHWRAGHLLGIS*LEAKDQ
Trigger: CTGGTCCTTGGCCTCCAGTCAGCTGATTCCCAGAAG...GTGGCCAGCTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR GCA 90 bp GACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGAGCTACGGTGGGTGCTCAGTaGACCCTTGGGCCTCCCTGT +
Preference number: 4 (lower is better)
Translates to: DSLGPALRRGSSPGHWRATVGAQ*TLGPPC
Trigger: ACAGGGAGGCCCAAGGGTGCACTGAGCACCCACCGT...AGCTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR GCA 90 bp CTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGAGCTGGCCACTGCCGATCTCTGTCATaGCATAGCGCTCCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: LGPALRRGSSPGHWRAGHCRSLS*HSAPAA
Trigger: CGCTGCTGGAGCGCTATGGCATGACAGAGATCGGCA...GTGGCCAGCTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp ACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGAGCTGATCCGTGTGGGCCTCTaGGGTGGTAGGCAGGAGGCT +
Preference number: 4 (lower is better)
Translates to: TLWDLPSGEAAAPGTGELIRVGL*GGRQEA
Trigger: AGCCTCCTGCCTACCACCCCAGAGGCCCACACGGAT...CAGCTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp CCTCTGACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGACCACTTCTCCAGCAGTaGGACAGGCAGAGCGGCCGA +
Preference number: 4 (lower is better)
Translates to: PLTLWDLPSGEAAAPGTGPLLQQ*DRQSGR
Trigger: TCGGCCGCTCTGCCTGTCCCACTGCTGGAGAAGTGG...TCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp GACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGAGCTCCACTTCTCCAGCAGTaGGACAGGCAGAGCGGCCGA +
Preference number: 4 (lower is better)
Translates to: DSLGPALRRGSSPGHWRAPLLQQ*DRQSGR
Trigger: TCGGCCGCTCTGCCTGTCCCACTGCTGGAGAAGTGG...AGCTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp GACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGAGCTAGGCCAGGGCACGGATaGATACCGGGACACTCCCAT +
Preference number: 4 (lower is better)
Translates to: DSLGPALRRGSSPGHWRARPGHG*IPGHSH
Trigger: ATGGGAGTGTCCCGGTATTCATCCGTGCCCTGGCCT...AGCTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp CAGCAGCCCCGGGCACTGGAGAGCTGGCCACAGCCGTGTCCTTACTGTGCTTGTGGGACTCCCAGCCTCTaGGCCAGTGGACTTAGCCGC +
Preference number: 4 (lower is better)
Translates to: QQPRALESWPQPCPYCACGTPSL*ASGLSR
Trigger: GCGGCTAAGTCCACTGGCTCAGAGGCTGGGAGTCCC...ACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCTCCAGTGCCCGGGGCTGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR GCA 90 bp CTGATTGCAGGAGGGGAGGGGTTCCATCCGAGGCCCATAGCACGTGACCGCGGGACGGTGGGTGCTCAGTaGACCCTTGGGCCTCCCTGT +
Preference number: 4 (lower is better)
Translates to: LIAGGEGFHPRPIARDRGTVGAQ*TLGPPC
Trigger: ACAGGGAGGCCCAAGGGTGCACTGAGCACCCACCGT...CCCGCGGTCACGTGCTATGGGCCTCGGATGGAACCCCTCCCCTCCTGCAATCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp GGGCACAGGCCCAGGCAATCCCAGGCTTTGGGAGGCCCTGCAGTAAGGTGCGAGATCCGTGTGGGCCTCTaGGGTGGTAGGCAGGAGGCT +
Preference number: 4 (lower is better)
Translates to: GHRPRQSQALGGPAVRCEIRVGL*GGRQEA
Trigger: AGCCTCCTGCCTACCACCCCAGAGGCCCACACGGAT...CTCGCACCTTACTGCAGGGCCTCCCAAAGCCTGGGATTGCCTGGGCCTGTGCCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CCA 90 bp TCACGGGTCCCACTGTTGGCTTCTCGGCTTCACCCTCCCCACGTCCAGAATCCACGCTCCAGCAGCGTGTaGCCCGTGGCGCTCCTCCAC +
Preference number: 4 (lower is better)
Translates to: SRVPLLASRLHPPHVQNPRSSSV*PVALLH
Trigger: GTGGAGGAGCGCCACGGGCCACACGCTGCTGGAGCG...TGGATTCTGGACGTGGGGAGGGTGAAGCCGAGAAGCCAACAGTGGGACCCGTGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CCA 90 bp GTCAACCTGATTGCAGGAGGGGAGGGGTTCCATCCGAGGCCCATAGCACGTGACCGCTCCAGCAGCGTGTaGCCCGTGGCGCTCCTCCAC +
Preference number: 4 (lower is better)
Translates to: VNLIAGGEGFHPRPIARDRSSSV*PVALLH
Trigger: GTGGAGGAGCGCCACGGGCCACACGCTGCTGGAGCG...GTCACGTGCTATGGGCCTCGGATGGAACCCCTCCCCTCCTGCAATCAGGTTGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp ACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGAGCTGTTTAGTCCACGCCCATaGGTGGACCAGCCCAGTCAC +
Preference number: 4 (lower is better)
Translates to: TLWDLPSGEAAAPGTGELFSPRP*VDQPSH
Trigger: GTGACTGGGCTGGTCCACTCATGGGCGTGGACTAAA...CAGCTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp TCCCTGCCCTGGGTTAAGAAGGGAGCTGTGGGCACAGGCCCAGGCAATCCCAGGGAGCAACCACAGCTGTaGCCCGCTGGCCCCATGTCA +
Preference number: 4 (lower is better)
Translates to: SLPWVKKGAVGTGPGNPREQPQL*PAGPMS
Trigger: TGACATGGGGCCAGCGGGTCACAGCTGTGGTTGCTC...CCTGGGATTGCCTGGGCCTGTGCCCACAGCTCCCTTCTTAACCCAGGGCAGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR GCA 90 bp GACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGAGCTAGCTGGGCCTCAGGGTaGTTCCAGTACAGTGGGACA +
Preference number: 4 (lower is better)
Translates to: DSLGPALRRGSSPGHWRASWASG*FQYSGT
Trigger: TGTCCCACTGTACTGGAAGCACCCTGAGGCCCAGCT...AGCTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR GCA 90 bp GAGAGCTGGCCACAGCCGTGTCCTTACTGTGCTTGTGAGACTGGCACACACCAGGGGTGGGCCAGCAGGTaGCGCTCGATCTCCAGGGCG +
Preference number: 4 (lower is better)
Translates to: ESWPQPCPYCACETGTHQGWASR*RSISRA
Trigger: CGCCCTGGAGATCGAGCGGCACCTGCTGGCCCACCC...CTGGTGTGTGCCAGTCTCACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp CAGCAGCCCCGGGCACTGGAGAGCTGGCCACAGCCGTGTCCTTACTGTGCTTGTATCCGTGTGGGCCTCTaGGGTGGTAGGCAGGAGGCT +
Preference number: 4 (lower is better)
Translates to: QQPRALESWPQPCPYCACIRVGL*GGRQEA
Trigger: AGCCTCCTGCCTACCACCCCAGAGGCCCACACGGAT...ACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCTCCAGTGCCCGGGGCTGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp CTGATTGCAGGAGGGGAGGGGTTCCATCCGAGGCCCATAGCACGTGACCGCGGGTTGTTGACCACGCCGTaGACATGGTGCAGCGGGAGG +
Preference number: 4 (lower is better)
Translates to: LIAGGEGFHPRPIARDRGLLTTP*TWCSGR
Trigger: CCTCCCGCTGCACCATGTCCACGGCGTGGTCAACAA...CCCGCGGTCACGTGCTATGGGCCTCGGATGGAACCCCTCCCCTCCTGCAATCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp TGTGGGCACAGGCCCAGGCAATCCCAGGCTTTGGGAGGCCCTGCAGTAAGGTGCCCACTTCTCCAGCAGTaGGACAGGCAGAGCGGCCGA +
Preference number: 4 (lower is better)
Translates to: CGHRPRQSQALGGPAVRCPLLQQ*DRQSGR
Trigger: TCGGCCGCTCTGCCTGTCCCACTGCTGGAGAAGTGG...GCACCTTACTGCAGGGCCTCCCAAAGCCTGGGATTGCCTGGGCCTGTGCCCACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CCA 90 bp CCTCTGACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGATTCACCTTGCCCATCTaGTTCCGGGGGATCTCCTCC +
Preference number: 4 (lower is better)
Translates to: PLTLWDLPSGEAAAPGTGFTLPI*FRGISS
Trigger: GGAGGAGATCCCCCGGAACCAGATGGGCAAGGTGAA...TCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp CTGATTGCAGGAGGGGAGGGGTTCCATCCGAGGCCCATAGCACGTGACCGCGGGCTTCTGGGAATCAGCTaGCTGGAGGCCAAGGACCAG +
Preference number: 4 (lower is better)
Translates to: LIAGGEGFHPRPIARDRGLLGIS*LEAKDQ
Trigger: CTGGTCCTTGGCCTCCAGTCAGCTGATTCCCAGAAG...CCCGCGGTCACGTGCTATGGGCCTCGGATGGAACCCCTCCCCTCCTGCAATCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp GTAAGGTGCGAGGCACTCAGGCAGTCCTCAGGGCTGCGAAGCCCAGGCCATCCTAGGCCAGGGCACGGATaGATACCGGGACACTCCCAT +
Preference number: 4 (lower is better)
Translates to: VRCEALRQSSGLRSPGHPRPGHG*IPGHSH
Trigger: ATGGGAGTGTCCCGGTATTCATCCGTGCCCTGGCCT...AGGATGGCCTGGGCTTCGCAGCCCTGAGGACTGCCTGAGTGCCTCGCACCTTAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR GCA 90 bp ACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGAGCTGTACAACCCTGAAGCCTaGAGATCTCCTGGGCCAGAC +
Preference number: 4 (lower is better)
Translates to: TLWDLPSGEAAAPGTGELYNPEA*RSPGPD
Trigger: GTCTGGCCCAGGAGATCTGCAGGCTTCAGGGTTGTA...CAGCTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp TGTGGGCACAGGCCCAGGCAATCCCAGGCTTTGGGAGGCCCTGCAGTAAGGTGCCCTTGGGCCTCCCTGTaGTCCCGCTGGTGTAGAAGA +
Preference number: 4 (lower is better)
Translates to: CGHRPRQSQALGGPAVRCPWASL*SRWCRR
Trigger: TCTTCTACACCAGCGGGACCACAGGGAGGCCCAAGG...GCACCTTACTGCAGGGCCTCCCAAAGCCTGGGATTGCCTGGGCCTGTGCCCACA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CCA 90 bp AGCTGTGGGCACAGGCCCAGGCAATCCCAGGCTTTGGGAGGCCCTGCAGTAAGGTTGTTGACCACGCCGTaGACATGGTGCAGCGGGAGG +
Preference number: 4 (lower is better)
Translates to: SCGHRPRQSQALGGPAVRLLTTP*TWCSGR
Trigger: CCTCCCGCTGCACCATGTCCACGGCGTGGTCAACAA...CCTTACTGCAGGGCCTCCCAAAGCCTGGGATTGCCTGGGCCTGTGCCCACAGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CCA 90 bp CTCACTGTCACCTCTGACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCTTGTTGACCACGCCGTaGACATGGTGCAGCGGGAGG +
Preference number: 4 (lower is better)
Translates to: LTVTSDSLGPALRRGSSPLLTTP*TWCSGR
Trigger: CCTCCCGCTGCACCATGTCCACGGCGTGGTCAACAA...GGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGGTGACAGTGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp TCAAGGACCACTGAGGACACAGCCAGTGGTCAGGGTCACCTGGGCTTGGACAATCGCTCCAGCAGCGTGTaGCCCGTGGCGCTCCTCCAC +
Preference number: 4 (lower is better)
Translates to: SRTTEDTASGQGHLGLDNRSSSV*PVALLH
Trigger: GTGGAGGAGCGCCACGGGCCACACGCTGCTGGAGCG...ATTGTCCAAGCCCAGGTGACCCTGACCACTGGCTGTGTCCTCAGTGGTCCTTGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp AGTGGTCAGGGTCACCTGGGCTTGGACAATCAGCCTGGGGTTGAGGGAACTCACTCGGTGATGCTGGGGTaGGCCAGCAGGTGCCGCTCG +
Preference number: 4 (lower is better)
Translates to: SGQGHLGLDNQPGVEGTHSVMLG*ASRCRS
Trigger: CGAGCGGCACCTGCTGGCCCACCCCAGCATCACCGA...GTGAGTTCCCTCAACCCCAGGCTGATTGTCCAAGCCCAGGTGACCCTGACCACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp GGGTCCCACTGTTGGCTTCTCGGCTTCACCCTCCCCACGTCCAGAATCCAGAATTCGGTGATGCTGGGGTaGGCCAGCAGGTGCCGCTCG +
Preference number: 4 (lower is better)
Translates to: GSHCWLLGFTLPTSRIQNSVMLG*ASRCRS
Trigger: CGAGCGGCACCTGCTGGCCCACCCCAGCATCACCGA...ATTCTGGATTCTGGACGTGGGGAGGGTGAAGCCGAGAAGCCAACAGTGGGACCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR TCA 90 bp GTCAACCTGATTGCAGGAGGGGAGGGGTTCCATCCGAGGCCCATAGCACGTGACGAGCAACCACAGCTGTaGCCCGCTGGCCCCATGTCA +
Preference number: 4 (lower is better)
Translates to: VNLIAGGEGFHPRPIARDEQPQL*PAGPMS
Trigger: TGACATGGGGCCAGCGGGTCACAGCTGTGGTTGCTC...GTCACGTGCTATGGGCCTCGGATGGAACCCCTCCCCTCCTGCAATCAGGTTGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp ACTGAGGACACAGCCAGTGGTCAGGGTCACCTGGGCTTGGACAATCAGCCTGGGGAGCAACCACAGCTGTaGCCCGCTGGCCCCATGTCA +
Preference number: 4 (lower is better)
Translates to: TEDTASGQGHLGLDNQPGEQPQL*PAGPMS
Trigger: TGACATGGGGCCAGCGGGTCACAGCTGTGGTTGCTC...CCCAGGCTGATTGTCCAAGCCCAGGTGACCCTGACCACTGGCTGTGTCCTCAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR GCA 90 bp GTAAGGTGCGAGGCACTCAGGCAGTCCTCAGGGCTGCGAAGCCCAGGCCATCCTTGCCGATCTCTGTCATaGCATAGCGCTCCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: VRCEALRQSSGLRSPGHPCRSLS*HSAPAA
Trigger: CGCTGCTGGAGCGCTATGGCATGACAGAGATCGGCA...AGGATGGCCTGGGCTTCGCAGCCCTGAGGACTGCCTGAGTGCCTCGCACCTTAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CCA 90 bp CTGTGGGCACAGGCCCAGGCAATCCCAGGCTTTGGGAGGCCCTGCAGTAAGGTGAGCCTGCAGATCTCCTaGGCCAGACAAAGGCTGCGA +
Preference number: 4 (lower is better)
Translates to: LWAQAQAIPGFGRPCSKVSLQIS*ARQRLR
Trigger: TCGCAGCCTTTGTCTGGCCCAGGAGATCTGCAGGCT...CACCTTACTGCAGGGCCTCCCAAAGCCTGGGATTGCCTGGGCCTGTGCCCACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CCA 90 bp GAGAGCTGGCCACAGCCGTGTCCTTACTGTGCTTGTGAGACTGGCACACACCAGGCAGCGTGTGGCCCGTaGCGCTCCTCCACTTCTCCA +
Preference number: 4 (lower is better)
Translates to: ESWPQPCPYCACETGTHQAACGP*RSSTSP
Trigger: TGGAGAAGTGGAGGAGCGCCACGGGCCACACGCTGC...CTGGTGTGTGCCAGTCTCACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp TCAAGGACCACTGAGGACACAGCCAGTGGTCAGGGTCACCTGGGCTTGGACAATTCGGTGATGCTGGGGTaGGCCAGCAGGTGCCGCTCG +
Preference number: 4 (lower is better)
Translates to: SRTTEDTASGQGHLGLDNSVMLG*ASRCRS
Trigger: CGAGCGGCACCTGCTGGCCCACCCCAGCATCACCGA...ATTGTCCAAGCCCAGGTGACCCTGACCACTGGCTGTGTCCTCAGTGGTCCTTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp CTGATTGCAGGAGGGGAGGGGTTCCATCCGAGGCCCATAGCACGTGACCGCGGGACAGCTGTGACCCGCTaGCCCCATGTCATATCAGGA +
Preference number: 4 (lower is better)
Translates to: LIAGGEGFHPRPIARDRGTAVTR*PHVISG
Trigger: TCCTGATATGACATGGGGCCAGCGGGTCACAGCTGT...CCCGCGGTCACGTGCTATGGGCCTCGGATGGAACCCCTCCCCTCCTGCAATCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp CAGCAGCCCCGGGCACTGGAGAGCTGGCCACAGCCGTGTCCTTACTGTGCTTGTTTCACCTTGCCCATCTaGTTCCGGGGGATCTCCTCC +
Preference number: 4 (lower is better)
Translates to: QQPRALESWPQPCPYCACFTLPI*FRGISS
Trigger: GGAGGAGATCCCCCGGAACCAGATGGGCAAGGTGAA...ACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCTCCAGTGCCCGGGGCTGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp AGAGCTGGCCACAGCCGTGTCCTTACTGTGCTTGTGAGACTGGCACACACCAGTGGGACTCCCAGCCTCTaGGCCAGTGGACTTAGCCGC +
Preference number: 4 (lower is better)
Translates to: RAGHSRVLTVLVRLAHTSGTPSL*ASGLSR
Trigger: GCGGCTAAGTCCACTGGCTCAGAGGCTGGGAGTCCC...ACTGGTGTGTGCCAGTCTCACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp CACGGGTCCCACTGTTGGCTTCTCGGCTTCACCCTCCCCACGTCCAGAATCCAGTTTAGTCCACGCCCATaGGTGGACCAGCCCAGTCAC +
Preference number: 4 (lower is better)
Translates to: HGSHCWLLGFTLPTSRIQFSPRP*VDQPSH
Trigger: GTGACTGGGCTGGTCCACTCATGGGCGTGGACTAAA...CTGGATTCTGGACGTGGGGAGGGTGAAGCCGAGAAGCCAACAGTGGGACCCGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR TCA 90 bp GACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGAGCTTGCAGCGGGAGGACGTaGAGGATCACATCGTTTTTA +
Preference number: 4 (lower is better)
Translates to: DSLGPALRRGSSPGHWRACSGRT*RITSFL
Trigger: TAAAAACGATGTGATCCTTCACGTCCTCCCGCTGCA...AGCTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp AGCTGTGGGCACAGGCCCAGGCAATCCCAGGCTTTGGGAGGCCCTGCAGTAAGGCGATCTCCAGGGCGCTaGCTTTATAGCCTCCAGTCT +
Preference number: 4 (lower is better)
Translates to: SCGHRPRQSQALGGPAVRRSPGR*LYSLQS
Trigger: AGACTGGAGGCTATAAAGTCAGCGCCCTGGAGATCG...CCTTACTGCAGGGCCTCCCAAAGCCTGGGATTGCCTGGGCCTGTGCCCACAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR GCA 90 bp TCCCTGCCCTGGGTTAAGAAGGGAGCTGTGGGCACAGGCCCAGGCAATCCCAGGTACAACCCTGAAGCCTaGAGATCTCCTGGGCCAGAC +
Preference number: 4 (lower is better)
Translates to: SLPWVKKGAVGTGPGNPRYNPEA*RSPGPD
Trigger: GTCTGGCCCAGGAGATCTGCAGGCTTCAGGGTTGTA...CCTGGGATTGCCTGGGCCTGTGCCCACAGCTCCCTTCTTAACCCAGGGCAGGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CCA 90 bp CCTCTTCTCACTGTCACCTCTGACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCCCTTGGGCCTCCCTGTaGTCCCGCTGGTGTAGAAGA +
Preference number: 4 (lower is better)
Translates to: PLLTVTSDSLGPALRRGSPWASL*SRWCRR
Trigger: TCTTCTACACCAGCGGGACCACAGGGAGGCCCAAGG...GCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGGTGACAGTGAGAAGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp GCTTCACCCTCCCCACGTCCAGAATCCAGAATGGTTCACCCAGCCTCCCCGCTCGCGTACTTCCACTCCTaGCAATGGGGTCCCCACAGA +
Preference number: 4 (lower is better)
Translates to: ASPSPRPESRMVHPASPLAYFHS*QWGPHR
Trigger: TCTGTGGGGACCCCATTGCCAGGAGTGGAAGTACGC...GAGCGGGGAGGCTGGGTGAACCATTCTGGATTCTGGACGTGGGGAGGGTGAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CCA 90 bp AGCTGTGGGCACAGGCCCAGGCAATCCCAGGCTTTGGGAGGCCCTGCAGTAAGGACAGCTGTGACCCGCTaGCCCCATGTCATATCAGGA +
Preference number: 4 (lower is better)
Translates to: SCGHRPRQSQALGGPAVRTAVTR*PHVISG
Trigger: TCCTGATATGACATGGGGCCAGCGGGTCACAGCTGT...CCTTACTGCAGGGCCTCCCAAAGCCTGGGATTGCCTGGGCCTGTGCCCACAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR TCA 90 bp CCTCTTCTCACTGTCACCTCTGACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCTTTAGTCCACGCCCATaGGTGGACCAGCCCAGTCAC +
Preference number: 4 (lower is better)
Translates to: PLLTVTSDSLGPALRRGSFSPRP*VDQPSH
Trigger: GTGACTGGGCTGGTCCACTCATGGGCGTGGACTAAA...GCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGGTGACAGTGAGAAGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR GCA 90 bp CCTCTGACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGTAGACAGTGGGCACTaGCATGAATACGGTAATCTG +
Preference number: 4 (lower is better)
Translates to: PLTLWDLPSGEAAAPGTGVDSGH*HEYGNL
Trigger: CAGATTACCGTATTCATGGCAGTGCCCACTGTCTAC...TCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp CTCACTGTCACCTCTGACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCATGAAATACTCCAGCTaGGCCTCAGGGTGCTTCCAG +
Preference number: 4 (lower is better)
Translates to: LTVTSDSLGPALRRGSSPMKYSS*ASGCFQ
Trigger: CTGGAAGCACCCTGAGGCCCAGCTGGAGTATTTCAT...GGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGGTGACAGTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp CACGGGTCCCACTGTTGGCTTCTCGGCTTCACCCTCCCCACGTCCAGAATCCAGCGCTCCAAGTACTCCTaGCCAACCACCACCAAAGAG +
Preference number: 4 (lower is better)
Translates to: HGSHCWLLGFTLPTSRIQRSKYS*PTTTKE
Trigger: CTCTTTGGTGGTGGTTGGCCAGGAGTACTTGGAGCG...CTGGATTCTGGACGTGGGGAGGGTGAAGCCGAGAAGCCAACAGTGGGACCCGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CCA 90 bp GACTATCACTGTCTCCCAACTCGGTTTGCAGCAGAGGCCCTTCCTACTGCCAAGGCAGCGTGTGGCCCGTaGCGCTCCTCCACTTCTCCA +
Preference number: 4 (lower is better)
Translates to: DYHCLPTRFAAEALPTAKAACGP*RSSTSP
Trigger: TGGAGAAGTGGAGGAGCGCCACGGGCCACACGCTGC...CTTGGCAGTAGGAAGGGCCTCTGCTGCAAACCGAGTTGGGAGACAGTGATAGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR TCA 90 bp ACATTTCTGCCTCAGACTATCACTGTCTCCCAACTCGGTTTGCAGCAGAGGCCCGGGACTCCCAGCCTCTaGGCCAGTGGACTTAGCCGC +
Preference number: 4 (lower is better)
Translates to: TFLPQTITVSQLGLQQRPGTPSL*ASGLSR
Trigger: GCGGCTAAGTCCACTGGCTCAGAGGCTGGGAGTCCC...GGGCCTCTGCTGCAAACCGAGTTGGGAGACAGTGATAGTCTGAGGCAGAAATGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR TCA 90 bp AGCTGTGGGCACAGGCCCAGGCAATCCCAGGCTTTGGGAGGCCCTGCAGTAAGGTGCAGCGGGAGGACGTaGAGGATCACATCGTTTTTA +
Preference number: 4 (lower is better)
Translates to: SCGHRPRQSQALGGPAVRCSGRT*RITSFL
Trigger: TAAAAACGATGTGATCCTTCACGTCCTCCCGCTGCA...CCTTACTGCAGGGCCTCCCAAAGCCTGGGATTGCCTGGGCCTGTGCCCACAGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR TCA 90 bp GACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGAGCTACCAGCCATCGGAAGTaGAAGCACTTTTCGTTTCTT +
Preference number: 4 (lower is better)
Translates to: DSLGPALRRGSSPGHWRATSHRK*KHFSFL
Trigger: AAGAAACGAAAAGTGCTTTCACTTCCGATGGCTGGT...AGCTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp GACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGAGCTAGGGGTACAACTGTTTaGGCAGCTCCTTCTTATTCA +
Preference number: 4 (lower is better)
Translates to: DSLGPALRRGSSPGHWRARGTTV*AAPSYS
Trigger: TGAATAAGAAGGAGCTGCTCAAACAGTTGTACCCCT...AGCTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR GCA 90 bp GTCAACCTGATTGCAGGAGGGGAGGGGTTCCATCCGAGGCCCATAGCACGTGACTACAACCCTGAAGCCTaGAGATCTCCTGGGCCAGAC +
Preference number: 4 (lower is better)
Translates to: VNLIAGGEGFHPRPIARDYNPEA*RSPGPD
Trigger: GTCTGGCCCAGGAGATCTGCAGGCTTCAGGGTTGTA...GTCACGTGCTATGGGCCTCGGATGGAACCCCTCCCCTCCTGCAATCAGGTTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR GCA 90 bp GAGAGCTGGCCACAGCCGTGTCCTTACTGTGCTTGTGAGACTGGCACACACCAGTGCCGATCTCTGTCATaGCATAGCGCTCCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: ESWPQPCPYCACETGTHQCRSLS*HSAPAA
Trigger: CGCTGCTGGAGCGCTATGGCATGACAGAGATCGGCA...CTGGTGTGTGCCAGTCTCACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCTC
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp CCTCTTCTCACTGTCACCTCTGACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCCGTAGGAGACGTCATTaGAGCACAGGAAGGAGACCC +
Preference number: 4 (lower is better)
Translates to: PLLTVTSDSLGPALRRGSRRRRH*STGRRP
Trigger: GGGTCTCCTTCCTGTGCTCCAATGACGTCTCCTACG...GCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGGTGACAGTGAGAAGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp CTCACTGTCACCTCTGACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCAGTGAATGTCCTTCTTaGAGAGCAACCACAGCTGTG +
Preference number: 4 (lower is better)
Translates to: LTVTSDSLGPALRRGSSPSECPS*RATTAV
Trigger: CACAGCTGTGGTTGCTCTTCAAGAAGGACATTCACT...GGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGGTGACAGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp TCCCTGCCCTGGGTTAAGAAGGGAGCTGTGGGCACAGGCCCAGGCAATCCCAGGAGTGAATGTCCTTCTTaGAGAGCAACCACAGCTGTG +
Preference number: 4 (lower is better)
Translates to: SLPWVKKGAVGTGPGNPRSECPS*RATTAV
Trigger: CACAGCTGTGGTTGCTCTTCAAGAAGGACATTCACT...CCTGGGATTGCCTGGGCCTGTGCCCACAGCTCCCTTCTTAACCCAGGGCAGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR GCA 90 bp CAGCAGCCCCGGGCACTGGAGAGCTGGCCACAGCCGTGTCCTTACTGTGCTTGTGTAGACAGTGGGCACTaGCATGAATACGGTAATCTG +
Preference number: 4 (lower is better)
Translates to: QQPRALESWPQPCPYCACVDSGH*HEYGNL
Trigger: CAGATTACCGTATTCATGGCAGTGCCCACTGTCTAC...ACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCTCCAGTGCCCGGGGCTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR GCA 90 bp ACTGAGGACACAGCCAGTGGTCAGGGTCACCTGGGCTTGGACAATCAGCCTGGGAGTAGTCCAGCAGCTTaGTGTAGACAGTGGGCACTG +
Preference number: 4 (lower is better)
Translates to: TEDTASGQGHLGLDNQPGSSPAA*CRQWAL
Trigger: CAGTGCCCACTGTCTACAGCAAGCTGCTGGACTACT...CCCAGGCTGATTGTCCAAGCCCAGGTGACCCTGACCACTGGCTGTGTCCTCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR GCA 90 bp GTCAACCTGATTGCAGGAGGGGAGGGGTTCCATCCGAGGCCCATAGCACGTGACAGTAGTCCAGCAGCTTaGTGTAGACAGTGGGCACTG +
Preference number: 4 (lower is better)
Translates to: VNLIAGGEGFHPRPIARDSSPAA*CRQWAL
Trigger: CAGTGCCCACTGTCTACAGCAAGCTGCTGGACTACT...GTCACGTGCTATGGGCCTCGGATGGAACCCCTCCCCTCCTGCAATCAGGTTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp AGAGCTGGCCACAGCCGTGTCCTTACTGTGCTTGTGAGACTGGCACACACCAGTAGCCTGCAGATCTCCTaGGCCAGACAAAGGCTGCGA +
Preference number: 4 (lower is better)
Translates to: RAGHSRVLTVLVRLAHTSSLQIS*ARQRLR
Trigger: TCGCAGCCTTTGTCTGGCCCAGGAGATCTGCAGGCT...ACTGGTGTGTGCCAGTCTCACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp GGGTCCCACTGTTGGCTTCTCGGCTTCACCCTCCCCACGTCCAGAATCCAGAATCGTAGGAGACGTCATTaGAGCACAGGAAGGAGACCC +
Preference number: 4 (lower is better)
Translates to: GSHCWLLGFTLPTSRIQNRRRRH*STGRRP
Trigger: GGGTCTCCTTCCTGTGCTCCAATGACGTCTCCTACG...ATTCTGGATTCTGGACGTGGGGAGGGTGAAGCCGAGAAGCCAACAGTGGGACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CCA 90 bp ACTGAGGACACAGCCAGTGGTCAGGGTCACCTGGGCTTGGACAATCAGCCTGGGGTGCTTCCAGTACAGTaGGACAGCAACACCACCACT +
Preference number: 4 (lower is better)
Translates to: TEDTASGQGHLGLDNQPGVLPVQ*DSNTTT
Trigger: AGTGGTGGTGTTGCTGTCCCACTGTACTGGAAGCAC...CCCAGGCTGATTGTCCAAGCCCAGGTGACCCTGACCACTGGCTGTGTCCTCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp GAGAGCTGGCCACAGCCGTGTCCTTACTGTGCTTGTGAGACTGGCACACACCAGCGCTCCAAGTACTCCTaGCCAACCACCACCAAAGAG +
Preference number: 4 (lower is better)
Translates to: ESWPQPCPYCACETGTHQRSKYS*PTTTKE
Trigger: CTCTTTGGTGGTGGTTGGCCAGGAGTACTTGGAGCG...CTGGTGTGTGCCAGTCTCACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp GACTGGCACACACCAGTGATCTCAAGGACCACTGAGGACACAGCCAGTGGTCAGGCGTACTTCCACTCCTaGCAATGGGGTCCCCACAGA +
Preference number: 4 (lower is better)
Translates to: DWHTPVISRTTEDTASGQAYFHS*QWGPHR
Trigger: TCTGTGGGGACCCCATTGCCAGGAGTGGAAGTACGC...CTGACCACTGGCTGTGTCCTCAGTGGTCCTTGAGATCACTGGTGTGTGCCAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp GAGAGCTGGCCACAGCCGTGTCCTTACTGTGCTTGTGAGACTGGCACACACCAGACAGCTGTGACCCGCTaGCCCCATGTCATATCAGGA +
Preference number: 4 (lower is better)
Translates to: ESWPQPCPYCACETGTHQTAVTR*PHVISG
Trigger: TCCTGATATGACATGGGGCCAGCGGGTCACAGCTGT...CTGGTGTGTGCCAGTCTCACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
3UTR CAA 72 bp ACTGAGGACACAGCCAGTGGTCAGGGTCACCTGGGCTaGGACAATCAGCCTGGGGTTGAGGGAACTCACTTG +
Preference number: 4 (lower is better)
Translates to: TEDTASGQGHLG*DNQPGVEGTHL
Trigger: CAAGTGAGTTCCCTCAACCCCAGGCTGATTGTCCAAGCCCAGGTGACCCTGACCACTGGCTGTGTCCTCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp GACTGGCACACACCAGTGATCTCAAGGACCACTGAGGACACAGCCAGTGGTCAGCGATCTCCAGGGCGCTaGCTTTATAGCCTCCAGTCT +
Preference number: 4 (lower is better)
Translates to: DWHTPVISRTTEDTASGQRSPGR*LYSLQS
Trigger: AGACTGGAGGCTATAAAGTCAGCGCCCTGGAGATCG...CTGACCACTGGCTGTGTCCTCAGTGGTCCTTGAGATCACTGGTGTGTGCCAGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR GCA 90 bp GGGTCCCACTGTTGGCTTCTCGGCTTCACCCTCCCCACGTCCAGAATCCAGAATAGTAGTCCAGCAGCTTaGTGTAGACAGTGGGCACTG +
Preference number: 4 (lower is better)
Translates to: GSHCWLLGFTLPTSRIQNSSPAA*CRQWAL
Trigger: CAGTGCCCACTGTCTACAGCAAGCTGCTGGACTACT...ATTCTGGATTCTGGACGTGGGGAGGGTGAAGCCGAGAAGCCAACAGTGGGACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CCA 90 bp GAGAGCTGGCCACAGCCGTGTCCTTACTGTGCTTGTGAGACTGGCACACACCAGGTGCTTCCAGTACAGTaGGACAGCAACACCACCACT +
Preference number: 4 (lower is better)
Translates to: ESWPQPCPYCACETGTHQVLPVQ*DSNTTT
Trigger: AGTGGTGGTGTTGCTGTCCCACTGTACTGGAAGCAC...CTGGTGTGTGCCAGTCTCACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCTC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp TCAAGGACCACTGAGGACACAGCCAGTGGTCAGGGTCACCTGGGCTTGGACAATGGCTCCTACCCAGAGTaGACAGAGCAGCTTGTTGAC +
Preference number: 4 (lower is better)
Translates to: SRTTEDTASGQGHLGLDNGSYPE*TEQLVD
Trigger: GTCAACAAGCTGCTCTGTCCACTCTGGGTAGGAGCC...ATTGTCCAAGCCCAGGTGACCCTGACCACTGGCTGTGTCCTCAGTGGTCCTTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp AGAGCTGGCCACAGCCGTGTCCTTACTGTGCTTGTGAGACTGGCACACACCAGTCCAACTTTACAACCCTaGAGCCTGCAGATCTCCTGG +
Preference number: 4 (lower is better)
Translates to: RAGHSRVLTVLVRLAHTSPTLQP*SLQISW
Trigger: CCAGGAGATCTGCAGGCTTCAGGGTTGTAAAGTTGG...ACTGGTGTGTGCCAGTCTCACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp TCAAGGACCACTGAGGACACAGCCAGTGGTCAGGGTCACCTGGGCTTGGACAATCCAACTTTACAACCCTaGAGCCTGCAGATCTCCTGG +
Preference number: 4 (lower is better)
Translates to: SRTTEDTASGQGHLGLDNPTLQP*SLQISW
Trigger: CCAGGAGATCTGCAGGCTTCAGGGTTGTAAAGTTGG...ATTGTCCAAGCCCAGGTGACCCTGACCACTGGCTGTGTCCTCAGTGGTCCTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp TGGAGAGCTGGCCACAGCCGTGTCCTTACTGTGCTTGTGAGACTGGCACACACCTGCAGCGGGAGGACGTaGAGGATCACATCGTTTTTA +
Preference number: 4 (lower is better)
Translates to: WRAGHSRVLTVLVRLAHTCSGRT*RITSFL
Trigger: TAAAAACGATGTGATCCTTCACGTCCTCCCGCTGCA...GGTGTGTGCCAGTCTCACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCTCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp GTCAACCTGATTGCAGGAGGGGAGGGGTTCCATCCGAGGCCCATAGCACGTGACAGTGAATGTCCTTCTTaGAGAGCAACCACAGCTGTG +
Preference number: 4 (lower is better)
Translates to: VNLIAGGEGFHPRPIARDSECPS*RATTAV
Trigger: CACAGCTGTGGTTGCTCTTCAAGAAGGACATTCACT...GTCACGTGCTATGGGCCTCGGATGGAACCCCTCCCCTCCTGCAATCAGGTTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp CCTCTTCTCACTGTCACCTCTGACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCGAGACCCTTTCTTCCTaGAGGTCCCCAACTTTACAA +
Preference number: 4 (lower is better)
Translates to: PLLTVTSDSLGPALRRGSETLSS*RSPTLQ
Trigger: TTGTAAAGTTGGGGACCTCCAGGAAGAAAGGGTCTC...GCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGGTGACAGTGAGAAGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp GTCAACCTGATTGCAGGAGGGGAGGGGTTCCATCCGAGGCCCATAGCACGTGACGAGACCCTTTCTTCCTaGAGGTCCCCAACTTTACAA +
Preference number: 4 (lower is better)
Translates to: VNLIAGGEGFHPRPIARDETLSS*RSPTLQ
Trigger: TTGTAAAGTTGGGGACCTCCAGGAAGAAAGGGTCTC...GTCACGTGCTATGGGCCTCGGATGGAACCCCTCCCCTCCTGCAATCAGGTTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp TCAAGGACCACTGAGGACACAGCCAGTGGTCAGGGTCACCTGGGCTTGGACAATATGAAATACTCCAGCTaGGCCTCAGGGTGCTTCCAG +
Preference number: 4 (lower is better)
Translates to: SRTTEDTASGQGHLGLDNMKYSS*ASGCFQ
Trigger: CTGGAAGCACCCTGAGGCCCAGCTGGAGTATTTCAT...ATTGTCCAAGCCCAGGTGACCCTGACCACTGGCTGTGTCCTCAGTGGTCCTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp TTCTGCCTCAGACTATCACTGTCTCCCAACTCGGTTTGCAGCAGAGGCCCTTCCGGCTCCTACCCAGAGTaGACAGAGCAGCTTGTTGAC +
Preference number: 4 (lower is better)
Translates to: FCLRLSLSPNSVCSRGPSGSYPE*TEQLVD
Trigger: GTCAACAAGCTGCTCTGTCCACTCTGGGTAGGAGCC...GGAAGGGCCTCTGCTGCAAACCGAGTTGGGAGACAGTGATAGTCTGAGGCAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR TCA 90 bp CCTCTTCTCACTGTCACCTCTGACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCACCAGCCATCGGAAGTaGAAGCACTTTTCGTTTCTT +
Preference number: 4 (lower is better)
Translates to: PLLTVTSDSLGPALRRGSTSHRK*KHFSFL
Trigger: AAGAAACGAAAAGTGCTTTCACTTCCGATGGCTGGT...GCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGGTGACAGTGAGAAGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR GCA 90 bp GGGTCCCACTGTTGGCTTCTCGGCTTCACCCTCCCCACGTCCAGAATCCAGAATGTAGACAGTGGGCACTaGCATGAATACGGTAATCTG +
Preference number: 4 (lower is better)
Translates to: GSHCWLLGFTLPTSRIQNVDSGH*HEYGNL
Trigger: CAGATTACCGTATTCATGGCAGTGCCCACTGTCTAC...ATTCTGGATTCTGGACGTGGGGAGGGTGAAGCCGAGAAGCCAACAGTGGGACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR GCA 90 bp TGTGGGCACAGGCCCAGGCAATCCCAGGCTTTGGGAGGCCCTGCAGTAAGGTGCTCTTTCTTTACAAACTaGACGCACAAAATCCTGGAC +
Preference number: 4 (lower is better)
Translates to: CGHRPRQSQALGGPAVRCSFFTN*THKILD
Trigger: GTCCAGGATTTTGTGCGTGCAGTTTGTAAAGAAAGA...GCACCTTACTGCAGGGCCTCCCAAAGCCTGGGATTGCCTGGGCCTGTGCCCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR GCA 90 bp CTCACTGTCACCTCTGACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCTCTTTCTTTACAAACTaGACGCACAAAATCCTGGAC +
Preference number: 4 (lower is better)
Translates to: LTVTSDSLGPALRRGSSPSFFTN*THKILD
Trigger: GTCCAGGATTTTGTGCGTGCAGTTTGTAAAGAAAGA...GGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGGTGACAGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp CTCACTGTCACCTCTGACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCACTTTTCGTTTCTTCTaGCTTATCCCAGTATTCTCG +
Preference number: 4 (lower is better)
Translates to: LTVTSDSLGPALRRGSSPTFRFF*LIPVFS
Trigger: CGAGAATACTGGGATAAGCCAGAAGAAACGAAAAGT...GGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGGTGACAGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp GTCAACCTGATTGCAGGAGGGGAGGGGTTCCATCCGAGGCCCATAGCACGTGACCTGAGACCATCAGCCTaGTTCTTTCTTTACAAACTG +
Preference number: 4 (lower is better)
Translates to: VNLIAGGEGFHPRPIARDLRPSA*FFLYKL
Trigger: CAGTTTGTAAAGAAAGAATCAGGCTGATGGTCTCAG...GTCACGTGCTATGGGCCTCGGATGGAACCCCTCCCCTCCTGCAATCAGGTTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR GCA 90 bp GCAGAGGCCCTTCCTACTGCCAAGTCTACATTTAATGAGGGAAGAGACAAACTAACGGTGGGTGCTCAGTaGACCCTTGGGCCTCCCTGT +
Preference number: 4 (lower is better)
Translates to: AEALPTAKSTFNEGRDKLTVGAQ*TLGPPC
Trigger: ACAGGGAGGCCCAAGGGTGCACTGAGCACCCACCGT...TAGTTTGTCTCTTCCCTCATTAAATGTAGACTTGGCAGTAGGAAGGGCCTCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CCA 90 bp ACATTTCTGCCTCAGACTATCACTGTCTCCCAACTCGGTTTGCAGCAGAGGCCCGTGCTTCCAGTACAGTaGGACAGCAACACCACCACT +
Preference number: 4 (lower is better)
Translates to: TFLPQTITVSQLGLQQRPVLPVQ*DSNTTT
Trigger: AGTGGTGGTGTTGCTGTCCCACTGTACTGGAAGCAC...GGGCCTCTGCTGCAAACCGAGTTGGGAGACAGTGATAGTCTGAGGCAGAAATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CCA 90 bp ATCACTGTCTCCCAACTCGGTTTGCAGCAGAGGCCCTTCCTACTGCCAAGTCTAATGAAATACTCCAGCTaGGCCTCAGGGTGCTTCCAG +
Preference number: 4 (lower is better)
Translates to: ITVSQLGLQQRPFLLPSLMKYSS*ASGCFQ
Trigger: CTGGAAGCACCCTGAGGCCCAGCTGGAGTATTTCAT...TAGACTTGGCAGTAGGAAGGGCCTCTGCTGCAAACCGAGTTGGGAGACAGTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CCA 90 bp GGGAACTCACTTGGTGATTCGTCCCTAGAGGTTTTGATTCCGGTCAACCTGATTCCTTGGGCCTCCCTGTaGTCCCGCTGGTGTAGAAGA +
Preference number: 4 (lower is better)
Translates to: GNSLGDSSLEVLIPVNLIPWASL*SRWCRR
Trigger: TCTTCTACACCAGCGGGACCACAGGGAGGCCCAAGG...AATCAGGTTGACCGGAATCAAAACCTCTAGGGACGAATCACCAAGTGAGTTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp AGTGGTCAGGGTCACCTGGGCTTGGACAATCAGCCTGGGGTTGAGGGAACTCACCTGAGACCATCAGCCTaGTTCTTTCTTTACAAACTG +
Preference number: 4 (lower is better)
Translates to: SGQGHLGLDNQPGVEGTHLRPSA*FFLYKL
Trigger: CAGTTTGTAAAGAAAGAATCAGGCTGATGGTCTCAG...GTGAGTTCCCTCAACCCCAGGCTGATTGTCCAAGCCCAGGTGACCCTGACCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp GACTGGCACACACCAGTGATCTCAAGGACCACTGAGGACACAGCCAGTGGTCAGAGGGGTACAACTGTTTaGGCAGCTCCTTCTTATTCA +
Preference number: 4 (lower is better)
Translates to: DWHTPVISRTTEDTASGQRGTTV*AAPSYS
Trigger: TGAATAAGAAGGAGCTGCTCAAACAGTTGTACCCCT...CTGACCACTGGCTGTGTCCTCAGTGGTCCTTGAGATCACTGGTGTGTGCCAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp GGGAACTCACTTGGTGATTCGTCCCTAGAGGTTTTGATTCCGGTCAACCTGATTGCGTACTTCCACTCCTaGCAATGGGGTCCCCACAGA +
Preference number: 4 (lower is better)
Translates to: GNSLGDSSLEVLIPVNLIAYFHS*QWGPHR
Trigger: TCTGTGGGGACCCCATTGCCAGGAGTGGAAGTACGC...AATCAGGTTGACCGGAATCAAAACCTCTAGGGACGAATCACCAAGTGAGTTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp GCAGAGGCCCTTCCTACTGCCAAGTCTACATTTAATGAGGGAAGAGACAAACTACTTCTGGGAATCAGCTaGCTGGAGGCCAAGGACCAG +
Preference number: 4 (lower is better)
Translates to: AEALPTAKSTFNEGRDKLLLGIS*LEAKDQ
Trigger: CTGGTCCTTGGCCTCCAGTCAGCTGATTCCCAGAAG...TAGTTTGTCTCTTCCCTCATTAAATGTAGACTTGGCAGTAGGAAGGGCCTCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR GCA 90 bp GCAGAGGCCCTTCCTACTGCCAAGTCTACATTTAATGAGGGAAGAGACAAACTAAGCTGGGCCTCAGGGTaGTTCCAGTACAGTGGGACA +
Preference number: 4 (lower is better)
Translates to: AEALPTAKSTFNEGRDKLSWASG*FQYSGT
Trigger: TGTCCCACTGTACTGGAAGCACCCTGAGGCCCAGCT...TAGTTTGTCTCTTCCCTCATTAAATGTAGACTTGGCAGTAGGAAGGGCCTCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CCA 90 bp ATCACTGTCTCCCAACTCGGTTTGCAGCAGAGGCCCTTCCTACTGCCAAGTCTAGAGACCCTTTCTTCCTaGAGGTCCCCAACTTTACAA +
Preference number: 4 (lower is better)
Translates to: ITVSQLGLQQRPFLLPSLETLSS*RSPTLQ
Trigger: TTGTAAAGTTGGGGACCTCCAGGAAGAAAGGGTCTC...TAGACTTGGCAGTAGGAAGGGCCTCTGCTGCAAACCGAGTTGGGAGACAGTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CCA 90 bp GGGAACTCACTTGGTGATTCGTCCCTAGAGGTTTTGATTCCGGTCAACCTGATTCGTAGGAGACGTCATTaGAGCACAGGAAGGAGACCC +
Preference number: 4 (lower is better)
Translates to: GNSLGDSSLEVLIPVNLIRRRRH*STGRRP
Trigger: GGGTCTCCTTCCTGTGCTCCAATGACGTCTCCTACG...AATCAGGTTGACCGGAATCAAAACCTCTAGGGACGAATCACCAAGTGAGTTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp GGGAACTCACTTGGTGATTCGTCCCTAGAGGTTTTGATTCCGGTCAACCTGATTCGCTCCAAGTACTCCTaGCCAACCACCACCAAAGAG +
Preference number: 4 (lower is better)
Translates to: GNSLGDSSLEVLIPVNLIRSKYS*PTTTKE
Trigger: CTCTTTGGTGGTGGTTGGCCAGGAGTACTTGGAGCG...AATCAGGTTGACCGGAATCAAAACCTCTAGGGACGAATCACCAAGTGAGTTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp GGGAACTCACTTGGTGATTCGTCCCTAGAGGTTTTGATTCCGGTCAACCTGATTGGCTCCTACCCAGAGTaGACAGAGCAGCTTGTTGAC +
Preference number: 4 (lower is better)
Translates to: GNSLGDSSLEVLIPVNLIGSYPE*TEQLVD
Trigger: GTCAACAAGCTGCTCTGTCCACTCTGGGTAGGAGCC...AATCAGGTTGACCGGAATCAAAACCTCTAGGGACGAATCACCAAGTGAGTTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CCA 90 bp AGTGGTCAGGGTCACCTGGGCTTGGACAATCAGCCTGGGGTTGAGGGAACTCACACTTTTCGTTTCTTCTaGCTTATCCCAGTATTCTCG +
Preference number: 4 (lower is better)
Translates to: SGQGHLGLDNQPGVEGTHTFRFF*LIPVFS
Trigger: CGAGAATACTGGGATAAGCCAGAAGAAACGAAAAGT...GTGAGTTCCCTCAACCCCAGGCTGATTGTCCAAGCCCAGGTGACCCTGACCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp TTGCAGCAGAGGCCCTTCCTACTGCCAAGTCTACATTTAATGAGGGAAGAGACACCAACTTTACAACCCTaGAGCCTGCAGATCTCCTGG +
Preference number: 4 (lower is better)
Translates to: LQQRPFLLPSLHLMREETPTLQP*SLQISW
Trigger: CCAGGAGATCTGCAGGCTTCAGGGTTGTAAAGTTGG...TGTCTCTTCCCTCATTAAATGTAGACTTGGCAGTAGGAAGGGCCTCTGCTGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR GCA 90 bp AGAGCTGGCCACAGCCGTGTCCTTACTGTGCTTGTGAGACTGGCACACACCAGTTCTTTCTTTACAAACTaGACGCACAAAATCCTGGAC +
Preference number: 4 (lower is better)
Translates to: RAGHSRVLTVLVRLAHTSSFFTN*THKILD
Trigger: GTCCAGGATTTTGTGCGTGCAGTTTGTAAAGAAAGA...ACTGGTGTGTGCCAGTCTCACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR TCA 90 bp GCAGAGGCCCTTCCTACTGCCAAGTCTACATTTAATGAGGGAAGAGACAAACTAACCAGCCATCGGAAGTaGAAGCACTTTTCGTTTCTT +
Preference number: 4 (lower is better)
Translates to: AEALPTAKSTFNEGRDKLTSHRK*KHFSFL
Trigger: AAGAAACGAAAAGTGCTTTCACTTCCGATGGCTGGT...TAGTTTGTCTCTTCCCTCATTAAATGTAGACTTGGCAGTAGGAAGGGCCTCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR TCA 90 bp GCAGAGGCCCTTCCTACTGCCAAGTCTACATTTAATGAGGGAAGAGACAAACTACTGAGACCATCAGCCTaGTTCTTTCTTTACAAACTG +
Preference number: 4 (lower is better)
Translates to: AEALPTAKSTFNEGRDKLLRPSA*FFLYKL
Trigger: CAGTTTGTAAAGAAAGAATCAGGCTGATGGTCTCAG...TAGTTTGTCTCTTCCCTCATTAAATGTAGACTTGGCAGTAGGAAGGGCCTCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CCA 90 bp TTGCAGCAGAGGCCCTTCCTACTGCCAAGTCTACATTTAATGAGGGAAGAGACAACTTTTCGTTTCTTCTaGCTTATCCCAGTATTCTCG +
Preference number: 4 (lower is better)
Translates to: LQQRPFLLPSLHLMREETTFRFF*LIPVFS
Trigger: CGAGAATACTGGGATAAGCCAGAAGAAACGAAAAGT...TGTCTCTTCCCTCATTAAATGTAGACTTGGCAGTAGGAAGGGCCTCTGCTGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CAA 90 bp CTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGAGCTGGCCACCCTCTGGCCCACTCCTaGAGATCCCCGTGGGACAGT +
Preference number: 5 (lower is better)
Translates to: LGPALRRGSSPGHWRAGHPLAHS*RSPWDS
Trigger: ACTGTCCCACGGGGATCTCAAGGAGTGGGCCAGAGG...GTGGCCAGCTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS CCA 90 bp TGCCGATCTCTGTCATGCCATAGCGCTCCAGCAGCGTGTGGCCCGTaGCGCTCCTCCACTTCTCCAGCAGTGGGACAGGCAGAGCGGCCG +
Preference number: 5 (lower is better)
Translates to: CRSLSCHSAPAACGP*RSSTSPAVGQAERP
Trigger: CGGCCGCTCTGCCTGTCCCACTGCTGGAGAAGTGGAGGAGCGCCACGGGCCACACGCTGCTGGAGCGCTATGGCATGACAGAGATCGGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS GCA 90 bp GAGCCTCCGTCAGGGGGTTGGACAGAGCCATGCCGATCTCTGTCATaGCATAGCGCTCCAGCAGCGTGTGGCCCGTGGCGCTCCTCCACT +
Preference number: 5 (lower is better)
Translates to: EPPSGGWTEPCRSLS*HSAPAACGPWRSST
Trigger: AGTGGAGGAGCGCCACGGGCCACACGCTGCTGGAGCGCTATGGCATGACAGAGATCGGCATGGCTCTGTCCAACCCCCTGACGGAGGCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 90 bp CGGCTAGGTTACGGTGGGTGCTCAGTGCACCCTTGGGCCTCCCTGTaGTCCCGCTGGTGTAGAAGATCATGGCACCCCGGTCACGCCACC +
Preference number: 5 (lower is better)
Translates to: RLGYGGCSVHPWASL*SRWCRRSWHPGHAT
Trigger: GGTGGCGTGACCGGGGTGCCATGATCTTCTACACCAGCGGGACCACAGGGAGGCCCAAGGGTGCACTGAGCACCCACCGTAACCTAGCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS-3UTR CAA 90 bp GACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGAGCTCTGTGGGCTTCTCTGTaGCTCCATGGTAGACGGCAG +
Preference number: 5 (lower is better)
Translates to: DSLGPALRRGSSPGHWRALWASL*LHGRRQ
Trigger: CTGCCGTCTACCATGGAGCAACAGAGAAGCCCACAG...AGCTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS GCA 90 bp ATGAGTGGACCAGCCCAGTCACCACAGCGGCTAGGTTACGGTGGGTaGTCAGTGCACCCTTGGGCCTCCCTGTGGTCCCGCTGGTGTAGA +
Preference number: 5 (lower is better)
Translates to: MSGPAQSPQRLGYGG*SVHPWASLWSRWCR
Trigger: TCTACACCAGCGGGACCACAGGGAGGCCCAAGGGTGCACTGAGCACCCACCGTAACCTAGCCGCTGTGGTGACTGGGCTGGTCCACTCAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 90 bp GTGCACCCTTGGGCCTCCCTGTGGTCCCGCTGGTGTAGAAGATCATaGCACCCCGGTCACGCCACCCACTCTCTTCAACTGGCTGCTCTG +
Preference number: 5 (lower is better)
Translates to: VHPWASLWSRWCRRS*HPGHATHSLQLAAL
Trigger: CAGAGCAGCCAGTTGAAGAGAGTGGGTGGCGTGACCGGGGTGCCATGATCTTCTACACCAGCGGGACCACAGGGAGGCCCAAGGGTGCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 90 bp TACGGTGGGTGCTCAGTGCACCCTTGGGCCTCCCTGTGGTCCCGCTaGTGTAGAAGATCATGGCACCCCGGTCACGCCACCCACTCTCTT +
Preference number: 5 (lower is better)
Translates to: YGGCSVHPWASLWSR*CRRSWHPGHATHSL
Trigger: AAGAGAGTGGGTGGCGTGACCGGGGTGCCATGATCTTCTACACCAGCGGGACCACAGGGAGGCCCAAGGGTGCACTGAGCACCCACCGTA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS-3UTR CAA 90 bp CCTCTGACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGATCCTTCTTATTCACCTaGCCCATCTGGTTCCGGGGG +
Preference number: 5 (lower is better)
Translates to: PLTLWDLPSGEAAAPGTGSFLFT*PIWFRG
Trigger: CCCCCGGAACCAGATGGGCAAGGTGAATAAGAAGGA...TCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS CCA 90 bp CCAAAGGCCAGGGCACGGATGAATACCGGGACACTCCCATCCGTGTaGGCCTCTGGGGTGGTAGGCAGGAGGCTATGTCCTCGGTGTCTT +
Preference number: 5 (lower is better)
Translates to: PKARARMNTGTLPSV*ASGVVGRRLCPRCL
Trigger: AAGACACCGAGGACATAGCCTCCTGCCTACCACCCCAGAGGCCCACACGGATGGGAGTGTCCCGGTATTCATCCGTGCCCTGGCCTTTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS-3UTR CAA 90 bp GTAAGGTGCGAGGCACTCAGGCAGTCCTCAGGGCTGCGAAGCCCAGGCCATCCTCTGTGGGCTTCTCTGTaGCTCCATGGTAGACGGCAG +
Preference number: 5 (lower is better)
Translates to: VRCEALRQSSGLRSPGHPLWASL*LHGRRQ
Trigger: CTGCCGTCTACCATGGAGCAACAGAGAAGCCCACAG...AGGATGGCCTGGGCTTCGCAGCCCTGAGGACTGCCTGAGTGCCTCGCACCTTAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CAA 90 bp AGCTGTGGGCACAGGCCCAGGCAATCCCAGGCTTTGGGAGGCCCTGCAGTAAGGAGTGGACAGAGCAGCTaGTTGACCACGCCGTGGACA +
Preference number: 5 (lower is better)
Translates to: SCGHRPRQSQALGGPAVRSGQSS*LTTPWT
Trigger: TGTCCACGGCGTGGTCAACAAGCTGCTCTGTCCACT...CCTTACTGCAGGGCCTCCCAAAGCCTGGGATTGCCTGGGCCTGTGCCCACAGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CAA 90 bp ACTGAGGACACAGCCAGTGGTCAGGGTCACCTGGGCTTGGACAATCAGCCTGGGCCTCTGGCCCACTCCTaGAGATCCCCGTGGGACAGT +
Preference number: 5 (lower is better)
Translates to: TEDTASGQGHLGLDNQPGPLAHS*RSPWDS
Trigger: ACTGTCCCACGGGGATCTCAAGGAGTGGGCCAGAGG...CCCAGGCTGATTGTCCAAGCCCAGGTGACCCTGACCACTGGCTGTGTCCTCAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS TCA 90 bp GGCCAGGACACCTCTGGCCCACTCCTTGAGATCCCCGTGGGACAGTaGATGTCCTTCTTGAAGAGCAACCACAGCTGTGACCCGCTGGCC +
Preference number: 5 (lower is better)
Translates to: GQDTSGPLLEIPVGQ*MSFLKSNHSCDPLA
Trigger: GGCCAGCGGGTCACAGCTGTGGTTGCTCTTCAAGAAGGACATTCACTGTCCCACGGGGATCTCAAGGAGTGGGCCAGAGGTGTCCTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS CCA 90 bp AGCACTGAACTCCGGCAGCATGACACAGGTGGCTCCTACCCAGAGTaGACAGAGCAGCTTGTTGACCACGCCGTGGACATGGTGCAGCGG +
Preference number: 5 (lower is better)
Translates to: STELRQHDTGGSYPE*TEQLVDHAVDMVQR
Trigger: CCGCTGCACCATGTCCACGGCGTGGTCAACAAGCTGCTCTGTCCACTCTGGGTAGGAGCCACCTGTGTCATGCTGCCGGAGTTCAGTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS-3UTR CAA 90 bp CTCACTGTCACCTCTGACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCTCCTTCTTATTCACCTaGCCCATCTGGTTCCGGGGG +
Preference number: 5 (lower is better)
Translates to: LTVTSDSLGPALRRGSSPSFLFT*PIWFRG
Trigger: CCCCCGGAACCAGATGGGCAAGGTGAATAAGAAGGA...GGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGGTGACAGTGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS TCA 90 bp GTGGTAGGCAGGAGGCTATGTCCTCGGTGTCTTCTGGGAATCAGCTaGCTGGAGGCCAAGGACCAGAAGAGACGCCTGAAGGGCAGTGCC +
Preference number: 5 (lower is better)
Translates to: VVGRRLCPRCLLGIS*LEAKDQKRRLKGSA
Trigger: GGCACTGCCCTTCAGGCGTCTCTTCTGGTCCTTGGCCTCCAGTCAGCTGATTCCCAGAAGACACCGAGGACATAGCCTCCTGCCTACCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS-3UTR CAA 90 bp GGGTCCCACTGTTGGCTTCTCGGCTTCACCCTCCCCACGTCCAGAATCCAGAATGGACAGAGCAGCTTGTaGACCACGCCGTGGACATGG +
Preference number: 5 (lower is better)
Translates to: GSHCWLLGFTLPTSRIQNGQSSL*TTPWTW
Trigger: CCATGTCCACGGCGTGGTCAACAAGCTGCTCTGTCC...ATTCTGGATTCTGGACGTGGGGAGGGTGAAGCCGAGAAGCCAACAGTGGGACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CAA 90 bp GTCAACCTGATTGCAGGAGGGGAGGGGTTCCATCCGAGGCCCATAGCACGTGACAGTGGACAGAGCAGCTaGTTGACCACGCCGTGGACA +
Preference number: 5 (lower is better)
Translates to: VNLIAGGEGFHPRPIARDSGQSS*LTTPWT
Trigger: TGTCCACGGCGTGGTCAACAAGCTGCTCTGTCCACT...GTCACGTGCTATGGGCCTCGGATGGAACCCCTCCCCTCCTGCAATCAGGTTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CAA 90 bp ACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGAGCTGGAGGGGTACAACTGTTaGAGCAGCTCCTTCTTATTC +
Preference number: 5 (lower is better)
Translates to: TLWDLPSGEAAAPGTGELEGYNC*SSSFLF
Trigger: GAATAAGAAGGAGCTGCTCAAACAGTTGTACCCCTC...CAGCTCTCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CAA 90 bp CCTCTGACTCTCTGGGACCTGCCCTCAGGAGAGGCAGCAGCCCCGGGCACTGGAGAGGGGTACAACTGTTaGAGCAGCTCCTTCTTATTC +
Preference number: 5 (lower is better)
Translates to: PLTLWDLPSGEAAAPGTGEGYNC*SSSFLF
Trigger: GAATAAGAAGGAGCTGCTCAAACAGTTGTACCCCTC...TCCAGTGCCCGGGGCTGCTGCCTCTCCTGAGGGCAGGTCCCAGAGAGTCAGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS GCA 90 bp GAGCTCCGGGAGTCCTGGATGAAATACTCCAGCTGGGCCTCAGGGTaGTTCCAGTACAGTGGGACAGCAACACCACCACTCATCCAGGAG +
Preference number: 5 (lower is better)
Translates to: ELRESWMKYSSWASG*FQYSGTATPPLIQE
Trigger: CTCCTGGATGAGTGGTGGTGTTGCTGTCCCACTGTACTGGAAGCACCCTGAGGCCCAGCTGGAGTATTTCATCCAGGACTCCCGGAGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 90 bp GTAGAAGATCATGGCACCCCGGTCACGCCACCCACTCTCTTCAACTaGCTGCTCTGTGGGCTTCTCTGTTGCTCCATGGTAGACGGCAGG +
Preference number: 5 (lower is better)
Translates to: VEDHGTPVTPPTLFN*LLCGLLCCSMVDGR
Trigger: CCTGCCGTCTACCATGGAGCAACAGAGAAGCCCACAGAGCAGCCAGTTGAAGAGAGTGGGTGGCGTGACCGGGGTGCCATGATCTTCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS-3UTR CAA 90 bp AGTGGTCAGGGTCACCTGGGCTTGGACAATCAGCCTGGGGTTGAGGGAACTCACCTGTGGGCTTCTCTGTaGCTCCATGGTAGACGGCAG +
Preference number: 5 (lower is better)
Translates to: SGQGHLGLDNQPGVEGTHLWASL*LHGRRQ
Trigger: CTGCCGTCTACCATGGAGCAACAGAGAAGCCCACAG...GTGAGTTCCCTCAACCCCAGGCTGATTGTCCAAGCCCAGGTGACCCTGACCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CAA 90 bp TGGAGAGCTGGCCACAGCCGTGTCCTTACTGTGCTTGTGAGACTGGCACACACCAGTGGACAGAGCAGCTaGTTGACCACGCCGTGGACA +
Preference number: 5 (lower is better)
Translates to: WRAGHSRVLTVLVRLAHTSGQSS*LTTPWT
Trigger: TGTCCACGGCGTGGTCAACAAGCTGCTCTGTCCACT...GGTGTGTGCCAGTCTCACAAGCACAGTAAGGACACGGCTGTGGCCAGCTCTCCA
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CAA 90 bp AGTGGTCAGGGTCACCTGGGCTTGGACAATCAGCCTGGGGTTGAGGGAACTCACACCCTGGAGTCACCTTaGTCCCCCTCTCGTTTCCCT +
Preference number: 5 (lower is better)
Translates to: SGQGHLGLDNQPGVEGTHTLESP*SPSRFP
Trigger: AGGGAAACGAGAGGGGGACAAAGGTGACTCCAGGGT...GTGAGTTCCCTCAACCCCAGGCTGATTGTCCAAGCCCAGGTGACCCTGACCACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS TCA 90 bp AGTACTCCTGGCCAACCACCACCAAAGAGCTCCGGGAGTCCTGGATaGAATACTCCAGCTGGGCCTCAGGGTGCTTCCAGTACAGTGGGA +
Preference number: 5 (lower is better)
Translates to: STPGQPPPKSSGSPG*NTPAGPQGASSTVG
Trigger: TCCCACTGTACTGGAAGCACCCTGAGGCCCAGCTGGAGTATTTCATCCAGGACTCCCGGAGCTCTTTGGTGGTGGTTGGCCAGGAGTACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS TCA 90 bp AGCAGCTTGTTGACCACGCCGTGGACATGGTGCAGCGGGAGGACGTaGAGGATCACATCGTTTTTAGTCCACGCCCATGAGTGGACCAGC +
Preference number: 5 (lower is better)
Translates to: SSLLTTPWTWCSGRT*RITSFLVHAHEWTS
Trigger: GCTGGTCCACTCATGGGCGTGGACTAAAAACGATGTGATCCTTCACGTCCTCCCGCTGCACCATGTCCACGGCGTGGTCAACAAGCTGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 90 bp ACCACCACCAAAGAGCTCCGGGAGTCCTGGATGAAATACTCCAGCTaGGCCTCAGGGTGCTTCCAGTACAGTGGGACAGCAACACCACCA +
Preference number: 5 (lower is better)
Translates to: TTTKELRESWMKYSS*ASGCFQYSGTATPP
Trigger: TGGTGGTGTTGCTGTCCCACTGTACTGGAAGCACCCTGAGGCCCAGCTGGAGTATTTCATCCAGGACTCCCGGAGCTCTTTGGTGGTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 90 bp GGGTACAACTGTTTGAGCAGCTCCTTCTTATTCACCTTGCCCATCTaGTTCCGGGGGATCTCCTCCACCAGCAGGAGCTCCGAGGGCACA +
Preference number: 5 (lower is better)
Translates to: GYNCLSSSFLFTLPI*FRGISSTSRSSEGT
Trigger: TGTGCCCTCGGAGCTCCTGCTGGTGGAGGAGATCCCCCGGAACCAGATGGGCAAGGTGAATAAGAAGGAGCTGCTCAAACAGTTGTACCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CAA 90 bp GACTATCACTGTCTCCCAACTCGGTTTGCAGCAGAGGCCCTTCCTACTGCCAAGTACCTGGCCCACTCCTaGAGATCCCCGTGGGACAGT +
Preference number: 5 (lower is better)
Translates to: DYHCLPTRFAAEALPTAKYLAHS*RSPWDS
Trigger: ACTGTCCCACGGGGATCTCAAGGAGTGGGCCAGGTA...CTTGGCAGTAGGAAGGGCCTCTGCTGCAAACCGAGTTGGGAGACAGTGATAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS TCA 90 bp CTGGCCCACTCCTTGAGATCCCCGTGGGACAGTGAATGTCCTTCTTaGAGAGCAACCACAGCTGTGACCCGCTGGCCCCATGTCATATCA +
Preference number: 5 (lower is better)
Translates to: LAHSLRSPWDSECPS*RATTAVTRWPHVIS
Trigger: TGATATGACATGGGGCCAGCGGGTCACAGCTGTGGTTGCTCTTCAAGAAGGACATTCACTGTCCCACGGGGATCTCAAGGAGTGGGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS GCA 90 bp GTACAGTGGGACAGCAACACCACCACTCATCCAGGAGGCCCACTGTaGTACAACGTAGGAGACGTCATTGGAGCACAGGAAGGAGACCCT +
Preference number: 5 (lower is better)
Translates to: VQWDSNTTTHPGGPL*YNVGDVIGAQEGDP
Trigger: AGGGTCTCCTTCCTGTGCTCCAATGACGTCTCCTACGTTGTAGCACAGTGGGCCTCCTGGATGAGTGGTGGTGTTGCTGTCCCACTGTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 90 bp TCCAAGTACTCCTGGCCAACCACCACCAAAGAGCTCCGGGAGTCCTaGATGAAATACTCCAGCTGGGCCTCAGGGTGCTTCCAGTACAGT +
Preference number: 5 (lower is better)
Translates to: SKYSWPTTTKELRES*MKYSSWASGCFQYS
Trigger: ACTGTACTGGAAGCACCCTGAGGCCCAGCTGGAGTATTTCATCCAGGACTCCCGGAGCTCTTTGGTGGTGGTTGGCCAGGAGTACTTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 90 bp CACTCATCCAGGAGGCCCACTGTGCTACAACGTAGGAGACGTCATTaGAGCACAGGAAGGAGACCCTTTCTTCCTGGAGGTCCCCAACTT +
Preference number: 5 (lower is better)
Translates to: HSSRRPTVLQRRRRH*STGRRPFLPGGPQL
Trigger: AAGTTGGGGACCTCCAGGAAGAAAGGGTCTCCTTCCTGTGCTCCAATGACGTCTCCTACGTTGTAGCACAGTGGGCCTCCTGGATGAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS TCA 90 bp AGGAAGGAGACCCTTTCTTCCTGGAGGTCCCCAACTTTACAACCCTaGAGCCTGCAGATCTCCTGGGCCAGACAAAGGCTGCGATCATAC +
Preference number: 5 (lower is better)
Translates to: RKETLSSWRSPTLQP*SLQISWARQRLRSY
Trigger: GTATGATCGCAGCCTTTGTCTGGCCCAGGAGATCTGCAGGCTTCAGGGTTGTAAAGTTGGGGACCTCCAGGAAGAAAGGGTCTCCTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS TCA 90 bp CCCCGTGGGACAGTGAATGTCCTTCTTGAAGAGCAACCACAGCTGTaGCCCGCTGGCCCCATGTCATATCAGGAACTCCAATTACAGCGA +
Preference number: 5 (lower is better)
Translates to: PRGTVNVLLEEQPQL*PAGPMSYQELQLQR
Trigger: TCGCTGTAATTGGAGTTCCTGATATGACATGGGGCCAGCGGGTCACAGCTGTGGTTGCTCTTCAAGAAGGACATTCACTGTCCCACGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS GCA 90 bp AGACCCTTTCTTCCTGGAGGTCCCCAACTTTACAACCCTGAAGCCTaGAGATCTCCTGGGCCAGACAAAGGCTGCGATCATACAGTTCCC +
Preference number: 5 (lower is better)
Translates to: RPFLPGGPQLYNPEA*RSPGPDKGCDHTVP
Trigger: GGGAACTGTATGATCGCAGCCTTTGTCTGGCCCAGGAGATCTGCAGGCTTCAGGGTTGTAAAGTTGGGGACCTCCAGGAAGAAAGGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS-3UTR CAA 90 bp GGGAACTCACTTGGTGATTCGTCCCTAGAGGTTTTGATTCCGGTCAACCTGATTGGACAGAGCAGCTTGTaGACCACGCCGTGGACATGG +
Preference number: 5 (lower is better)
Translates to: GNSLGDSSLEVLIPVNLIGQSSL*TTPWTW
Trigger: CCATGTCCACGGCGTGGTCAACAAGCTGCTCTGTCC...AATCAGGTTGACCGGAATCAAAACCTCTAGGGACGAATCACCAAGTGAGTTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS-3UTR CAA 90 bp TTGCAGCAGAGGCCCTTCCTACTGCCAAGTCTACATTTAATGAGGGAAGAGACAACCCTGGAGTCACCTTaGTCCCCCTCTCGTTTCCCT +
Preference number: 5 (lower is better)
Translates to: LQQRPFLLPSLHLMREETTLESP*SPSRFP
Trigger: AGGGAAACGAGAGGGGGACAAAGGTGACTCCAGGGT...TGTCTCTTCCCTCATTAAATGTAGACTTGGCAGTAGGAAGGGCCTCTGCTGCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS-3UTR CAA 90 bp GGGAACTCACTTGGTGATTCGTCCCTAGAGGTTTTGATTCCGGTCAACCTGATTACCCTGGAGTCACCTTaGTCCCCCTCTCGTTTCCCT +
Preference number: 5 (lower is better)
Translates to: GNSLGDSSLEVLIPVNLITLESP*SPSRFP
Trigger: AGGGAAACGAGAGGGGGACAAAGGTGACTCCAGGGT...AATCAGGTTGACCGGAATCAAAACCTCTAGGGACGAATCACCAAGTGAGTTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS GCA 90 bp CTTTACAACCCTGAAGCCTGCAGATCTCCTGGGCCAGACAAAGGCTaGGATCATACAGTTCCCTGTAGGTGTGATGGCCATATTTGTCAA +
Preference number: 5 (lower is better)
Translates to: LYNPEACRSPGPDKG*DHTVPCRCDGHICQ
Trigger: TTGACAAATATGGCCATCACACCTACAGGGAACTGTATGATCGCAGCCTTTGTCTGGCCCAGGAGATCTGCAGGCTTCAGGGTTGTAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 90 bp TGTTCTGAACCAGCCATCGGAAGTGAAAGCACTTTTCGTTTCTTCTaGCTTATCCCAGTATTCTCGGAACACCGAGGGTCCCCTAACCAG +
Preference number: 5 (lower is better)
Translates to: CSEPAIGSESTFRFF*LIPVFSEHRGSPNQ
Trigger: CTGGTTAGGGGACCCTCGGTGTTCCGAGAATACTGGGATAAGCCAGAAGAAACGAAAAGTGCTTTCACTTCCGATGGCTGGTTCAGAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 90 bp CAGCTTGCTGTAGACAGTGGGCACTGCCATGAATACGGTAATCTGTaGGGCTTCAGAACTCAAGAATTTTTCCCAAACCTGCTGAGCACT +
Preference number: 5 (lower is better)
Translates to: QLAVDSGHCHEYGNL*GFRTQEFFPNLLST
Trigger: AGTGCTCAGCAGGTTTGGGAAAAATTCTTGAGTTCTGAAGCCCCACAGATTACCGTATTCATGGCAGTGCCCACTGTCTACAGCAAGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS TCA 90 bp TTTCTTTACAAACTGCACGCACAAAATCCTGGACATGGGGCTGCGTaGAATGCTTGTCATAGTAGTCCAGCAGCTTGCTGTAGACAGTGG +
Preference number: 5 (lower is better)
Translates to: FLYKLHAQNPGHGAA*NACHSSPAACCRQW
Trigger: CCACTGTCTACAGCAAGCTGCTGGACTACTATGACAAGCATTTCACGCAGCCCCATGTCCAGGATTTTGTGCGTGCAGTTTGTAAAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS GCA 72 bp TCAGGGGGTTGGACAGAGCCATGCCGATCTCTGTCATaGCATAGCGCTCCAGCAGCGTGTGGCCCGTGGCGC +
Preference number: 6 (lower is better)
Translates to: SGGWTEPCRSLS*HSAPAACGPWR
Trigger: GCGCCACGGGCCACACGCTGCTGGAGCGCTATGGCATGACAGAGATCGGCATGGCTCTGTCCAACCCCCTGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 72 bp CTGTCATGCCATAGCGCTCCAGCAGCGTGTGGCCCGTaGCGCTCCTCCACTTCTCCAGCAGTGGGACAGGCA +
Preference number: 6 (lower is better)
Translates to: LSCHSAPAACGP*RSSTSPAVGQA
Trigger: TGCCTGTCCCACTGCTGGAGAAGTGGAGGAGCGCCACGGGCCACACGCTGCTGGAGCGCTATGGCATGACAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 72 bp TACGGTGGGTGCTCAGTGCACCCTTGGGCCTCCCTGTaGTCCCGCTGGTGTAGAAGATCATGGCACCCCGGT +
Preference number: 6 (lower is better)
Translates to: YGGCSVHPWASL*SRWCRRSWHPG
Trigger: ACCGGGGTGCCATGATCTTCTACACCAGCGGGACCACAGGGAGGCCCAAGGGTGCACTGAGCACCCACCGTA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 72 bp GGAACTCCAATTACAGCGACATCGGTGATGCTGGGGTaGGCCAGCAGGTGCCGCTCGATCTCCAGGGCGCTG +
Preference number: 6 (lower is better)
Translates to: GTPITATSVMLG*ASRCRSISRAL
Trigger: CAGCGCCCTGGAGATCGAGCGGCACCTGCTGGCCCACCCCAGCATCACCGATGTCGCTGTAATTGGAGTTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CAA 72 bp CAGGTGGCTCCTACCCAGAGTGGACAGAGCAGCTTGTaGACCACGCCGTGGACATGGTGCAGCGGGAGGACG +
Preference number: 6 (lower is better)
Translates to: QVAPTQSGQSSL*TTPWTWCSGRT
Trigger: CGTCCTCCCGCTGCACCATGTCCACGGCGTGGTCAACAAGCTGCTCTGTCCACTCTGGGTAGGAGCCACCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS TCA 72 bp AGGTGGCTCCTACCCAGAGTGGACAGAGCAGCTTGTTaGCCACGCCGTGGACATGGTGCAGCGGGAGGACGT +
Preference number: 6 (lower is better)
Translates to: RWLLPRVDRAAC*PRRGHGAAGGR
Trigger: ACGTCCTCCCGCTGCACCATGTCCACGGCGTGGTCAACAAGCTGCTCTGTCCACTCTGGGTAGGAGCCACCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 72 bp AGGGCACGGATGAATACCGGGACACTCCCATCCGTGTaGGCCTCTGGGGTGGTAGGCAGGAGGCTATGTCCT +
Preference number: 6 (lower is better)
Translates to: RARMNTGTLPSV*ASGVVGRRLCP
Trigger: AGGACATAGCCTCCTGCCTACCACCCCAGAGGCCCACACGGATGGGAGTGTCCCGGTATTCATCCGTGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 72 bp TGGGCCTCCCTGTGGTCCCGCTGGTGTAGAAGATCATaGCACCCCGGTCACGCCACCCACTCTCTTCAACTG +
Preference number: 6 (lower is better)
Translates to: WASLWSRWCRRS*HPGHATHSLQL
Trigger: CAGTTGAAGAGAGTGGGTGGCGTGACCGGGGTGCCATGATCTTCTACACCAGCGGGACCACAGGGAGGCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CAA 72 bp ACACAGGTGGCTCCTACCCAGAGTGGACAGAGCAGCTaGTTGACCACGCCGTGGACATGGTGCAGCGGGAGG +
Preference number: 6 (lower is better)
Translates to: TQVAPTQSGQSS*LTTPWTWCSGR
Trigger: CCTCCCGCTGCACCATGTCCACGGCGTGGTCAACAAGCTGCTCTGTCCACTCTGGGTAGGAGCCACCTGTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 72 bp CTCCGGCAGCATGACACAGGTGGCTCCTACCCAGAGTaGACAGAGCAGCTTGTTGACCACGCCGTGGACATG +
Preference number: 6 (lower is better)
Translates to: LRQHDTGGSYPE*TEQLVDHAVDM
Trigger: CATGTCCACGGCGTGGTCAACAAGCTGCTCTGTCCACTCTGGGTAGGAGCCACCTGTGTCATGCTGCCGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS TCA 72 bp GGCCAACCACCACCAAAGAGCTCCGGGAGTCCTGGATaGAATACTCCAGCTGGGCCTCAGGGTGCTTCCAGT +
Preference number: 6 (lower is better)
Translates to: GQPPPKSSGSPG*NTPAGPQGASS
Trigger: ACTGGAAGCACCCTGAGGCCCAGCTGGAGTATTTCATCCAGGACTCCCGGAGCTCTTTGGTGGTGGTTGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 72 bp TCCTGGCCAACCACCACCAAAGAGCTCCGGGAGTCCTaGATGAAATACTCCAGCTGGGCCTCAGGGTGCTTC +
Preference number: 6 (lower is better)
Translates to: SWPTTTKELRES*MKYSSWASGCF
Trigger: GAAGCACCCTGAGGCCCAGCTGGAGTATTTCATCCAGGACTCCCGGAGCTCTTTGGTGGTGGTTGGCCAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS GCA 72 bp ACTCTCTTCAACTGGCTGCTCTGTGGGCTTCTCTGTTaGTCCATGGTAGACGGCAGGCGTGAGCGGCAGAAG +
Preference number: 6 (lower is better)
Translates to: TLFNWLLCGLLC*SMVDGRRERQK
Trigger: CTTCTGCCGCTCACGCCTGCCGTCTACCATGGAGCAACAGAGAAGCCCACAGAGCAGCCAGTTGAAGAGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CAA 72 bp ACAGACGTGCGCCCTCGGATCCAGTACCTAGCATCCTaGAACACGGCGGTGTCTCCTGTTCTGAACCAGCCA +
Preference number: 6 (lower is better)
Translates to: TDVRPRIQYLAS*NTAVSPVLNQP
Trigger: TGGCTGGTTCAGAACAGGAGACACCGCCGTGTTCAAGGATGCTAGGTACTGGATCCGAGGGCGCACGTCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CAA 90 bp ATGATGTCCACAGACGTGCGCCCTCGGATCCAGTACCTAGCATCCTaGAACACGGCGGTGTCTCCTGTTCTGAACCAGCCATCGGAAGTG +
Preference number: 6 (lower is better)
Translates to: MMSTDVRPRIQYLAS*NTAVSPVLNQPSEV
Trigger: CACTTCCGATGGCTGGTTCAGAACAGGAGACACCGCCGTGTTCAAGGATGCTAGGTACTGGATCCGAGGGCGCACGTCTGTGGACATCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CAA 90 bp TGTCCTGAGGGGTACAACTGTTTGAGCAGCTCCTTCTTATTCACCTaGCCCATCTGGTTCCGGGGGATCTCCTCCACCAGCAGGAGCTCC +
Preference number: 6 (lower is better)
Translates to: CPEGYNCLSSSFLFT*PIWFRGISSTSRSS
Trigger: GGAGCTCCTGCTGGTGGAGGAGATCCCCCGGAACCAGATGGGCAAGGTGAATAAGAAGGAGCTGCTCAAACAGTTGTACCCCTCAGGACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS TCA 72 bp TTGACCACGCCGTGGACATGGTGCAGCGGGAGGACGTaGAGGATCACATCGTTTTTAGTCCACGCCCATGAG +
Preference number: 6 (lower is better)
Translates to: LTTPWTWCSGRT*RITSFLVHAHE
Trigger: CTCATGGGCGTGGACTAAAAACGATGTGATCCTTCACGTCCTCCCGCTGCACCATGTCCACGGCGTGGTCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS TCA 72 bp TCCTTGAGATCCCCGTGGGACAGTGAATGTCCTTCTTaGAGAGCAACCACAGCTGTGACCCGCTGGCCCCAT +
Preference number: 6 (lower is better)
Translates to: SLRSPWDSECPS*RATTAVTRWPH
Trigger: ATGGGGCCAGCGGGTCACAGCTGTGGTTGCTCTTCAAGAAGGACATTCACTGTCCCACGGGGATCTCAAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 72 bp AAAGAGCTCCGGGAGTCCTGGATGAAATACTCCAGCTaGGCCTCAGGGTGCTTCCAGTACAGTGGGACAGCA +
Preference number: 6 (lower is better)
Translates to: KELRESWMKYSS*ASGCFQYSGTA
Trigger: TGCTGTCCCACTGTACTGGAAGCACCCTGAGGCCCAGCTGGAGTATTTCATCCAGGACTCCCGGAGCTCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 72 bp TGTTTGAGCAGCTCCTTCTTATTCACCTTGCCCATCTaGTTCCGGGGGATCTCCTCCACCAGCAGGAGCTCC +
Preference number: 6 (lower is better)
Translates to: CLSSSFLFTLPI*FRGISSTSRSS
Trigger: GGAGCTCCTGCTGGTGGAGGAGATCCCCCGGAACCAGATGGGCAAGGTGAATAAGAAGGAGCTGCTCAAACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS TCA 72 bp ACCCTTTCTTCCTGGAGGTCCCCAACTTTACAACCCTaGAGCCTGCAGATCTCCTGGGCCAGACAAAGGCTG +
Preference number: 6 (lower is better)
Translates to: TLSSWRSPTLQP*SLQISWARQRL
Trigger: CAGCCTTTGTCTGGCCCAGGAGATCTGCAGGCTTCAGGGTTGTAAAGTTGGGGACCTCCAGGAAGAAAGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS TCA 72 bp ACCTCTGGCCCACTCCTTGAGATCCCCGTGGGACAGTaGATGTCCTTCTTGAAGAGCAACCACAGCTGTGAC +
Preference number: 6 (lower is better)
Translates to: TSGPLLEIPVGQ*MSFLKSNHSCD
Trigger: GTCACAGCTGTGGTTGCTCTTCAAGAAGGACATTCACTGTCCCACGGGGATCTCAAGGAGTGGGCCAGAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS TCA 72 bp CTACCTGGCCCACTCCTTGAGATCCCCGTGGGACAGTaGATGTCCTTCTTGAAGAGCAACCACAGCTGTGAC +
Preference number: 6 (lower is better)
Translates to: LPGPLLEIPVGQ*MSFLKSNHSCD
Trigger: GTCACAGCTGTGGTTGCTCTTCAAGAAGGACATTCACTGTCCCACGGGGATCTCAAGGAGTGGGCCAGGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212781.2
CDS GCA 72 bp CTTCCTGGAGGTCCCCAACTTTACAACCCTGAAGCCTaGAGATCTCCTGGGCCAGACAAAGGCTGCGATCAT +
Preference number: 6 (lower is better)
Translates to: LPGGPQLYNPEA*RSPGPDKGCDH
Trigger: ATGATCGCAGCCTTTGTCTGGCCCAGGAGATCTGCAGGCTTCAGGGTTGTAAAGTTGGGGACCTCCAGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CAA 72 bp GGGTACAACTGTTTGAGCAGCTCCTTCTTATTCACCTaGCCCATCTGGTTCCGGGGGATCTCCTCCACCAGC +
Preference number: 6 (lower is better)
Translates to: GYNCLSSSFLFT*PIWFRGISSTS
Trigger: GCTGGTGGAGGAGATCCCCCGGAACCAGATGGGCAAGGTGAATAAGAAGGAGCTGCTCAAACAGTTGTACCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS TCA 72 bp CTGGCTGGCTCCTCTGTCCTGAGGGGTACAACTGTTTaGGCAGCTCCTTCTTATTCACCTTGCCCATCTGGT +
Preference number: 6 (lower is better)
Translates to: LAGSSVLRGTTV*AAPSYSPCPSG
Trigger: ACCAGATGGGCAAGGTGAATAAGAAGGAGCTGCTCAAACAGTTGTACCCCTCAGGACAGAGGAGCCAGCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015160.6
ENSMUST00000212790.2
CDS TCA 72 bp ACAGTGAATGTCCTTCTTGAAGAGCAACCACAGCTGTaGCCCGCTGGCCCCATGTCATATCAGGAACTCCAA +
Preference number: 6 (lower is better)
Translates to: TVNVLLEEQPQL*PAGPMSYQELQ
Trigger: TTGGAGTTCCTGATATGACATGGGGCCAGCGGGTCACAGCTGTGGTTGCTCTTCAAGAAGGACATTCACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS CCA 72 bp CCAGCCATCGGAAGTGAAAGCACTTTTCGTTTCTTCTaGCTTATCCCAGTATTCTCGGAACACCGAGGGTCC +
Preference number: 6 (lower is better)
Translates to: PAIGSESTFRFF*LIPVFSEHRGS
Trigger: GGACCCTCGGTGTTCCGAGAATACTGGGATAAGCCAGAAGAAACGAAAAGTGCTTTCACTTCCGATGGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2
CDS TCA 72 bp AAACTGCACGCACAAAATCCTGGACATGGGGCTGCGTaGAATGCTTGTCATAGTAGTCCAGCAGCTTGCTGT +
Preference number: 6 (lower is better)
Translates to: KLHAQNPGHGAA*NACHSSPAACC
Trigger: ACAGCAAGCTGCTGGACTACTATGACAAGCATTTCACGCAGCCCCATGTCCAGGATTTTGTGCGTGCAGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015160.6
ENSMUST00000212781.2
ENSMUST00000212790.2