Pregenerated sensors for ACRV1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032110Ensembl transcript IDs: ENSMUST00000034620.5
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GCGGAAGGATGGGAGCAAAGTAAGGCAGAGGACATAGGCAATGGGGTATCAATAAGCCAAGTAGAGTGGTaGACCTGCCTAAGTCAGAGC | + |
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Preference number: 2 (lower is better) Translates to: AEGWEQSKAEDIGNGVSISQVEW*TCLSQS Trigger: GCTCTGACTTAGGCAGGTTCACCACTCTACTTGGCT...TATTGATACCCCATTGCCTATGTCCTCTGCCTTACTTTGCTCCCATCCTTCCGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| 3UTR-3UTR TCA 90 bp | GCGGAAGGATGGGAGCAAAGTAAGGCAGAGGACATAGGCAATGGGGTATCAATAGAGCTTCTTATCTGGTaGTCAGGCAGAGCCCGATGT | + |
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Preference number: 2 (lower is better) Translates to: AEGWEQSKAEDIGNGVSIELLIW*SGRARC Trigger: ACATCGGGCTCTGCCTGATCACCAGATAAGAAGCTC...TATTGATACCCCATTGCCTATGTCCTCTGCCTTACTTTGCTCCCATCCTTCCGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| 3UTR TCA 72 bp | GGACATAGGCAATGGGGTATCAATAAAGACAAGGTTTaGGCTTCTTATCTGGTGATCAGGCAGAGCCCGATG | + |
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Preference number: 3 (lower is better) Translates to: GHRQWGINKDKV*ASYLVIRQSPM Trigger: CATCGGGCTCTGCCTGATCACCAGATAAGAAGCTCAAACCTTGTCTTTATTGATACCCCATTGCCTATGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS-3UTR CCA 90 bp | GAAGGATGGGAGCAAAGTAAGGCAGAGGACATAGGCAATGGGGTATCAATAAAGCTCCTCAGGCTGACCTaGTGGTGCTCCTTGGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: EGWEQSKAEDIGNGVSIKLLRLT*WCSLGR Trigger: TCTGCCCAAGGAGCACCACCAGGTCAGCCTGAGGAG...CTTTATTGATACCCCATTGCCTATGTCCTCTGCCTTACTTTGCTCCCATCCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS-3UTR TCA 90 bp | AAAAGAACATCTGCGGAAGGATGGGAGCAAAGTAAGGCAGAGGACATAGGCAATGGAGGGCTGGTCACTTaGGGACTGTTCAGTTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: KRTSAEGWEQSKAEDIGNGGLVT*GLFSCR Trigger: CCTGCAACTGAACAGTCCTCAAGTGACCAGCCCTCC...ATTGCCTATGTCCTCTGCCTTACTTTGCTCCCATCCTTCCGCAGATGTTCTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS-3UTR TCA 90 bp | GAGGACATAGGCAATGGGGTATCAATAAAGACAAGGTTTGAGCTTCTTATCTGGAGAAGCTCCTCAGGCTaGCCTGGTGGTGCTCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: EDIGNGVSIKTRFELLIWRSSSG*PGGAPW Trigger: CCAAGGAGCACCACCAGGTCAGCCTGAGGAGCTTCT...CCAGATAAGAAGCTCAAACCTTGTCTTTATTGATACCCCATTGCCTATGTCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS-3UTR TCA 90 bp | GAGCCAAGTAGAGTGGTGAACCTGCCTAAGTCAGAGCAAGAAGTAGGGCACGGGTGCATTCTTGTTCCATaGGAGAAGAGGTTCATAGAT | + |
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Preference number: 4 (lower is better) Translates to: EPSRVVNLPKSEQEVGHGCILVP*EKRFID Trigger: ATCTATGAACCTCTTCTCTCATGGAACAAGAATGCA...CCCGTGCCCTACTTCTTGCTCTGACTTAGGCAGGTTCACCACTCTACTTGGCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS-3UTR GCA 90 bp | GAGGACATAGGCAATGGGGTATCAATAAAGACAAGGTTTGAGCTTCTTATCTGGAGGCTGACCTGGTGGTaGTCCTTGGGCAGATCCAAG | + |
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Preference number: 4 (lower is better) Translates to: EDIGNGVSIKTRFELLIWRLTWW*SLGRSK Trigger: CTTGGATCTGCCCAAGGAGCACCACCAGGTCAGCCT...CCAGATAAGAAGCTCAAACCTTGTCTTTATTGATACCCCATTGCCTATGTCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS-3UTR CCA 90 bp | GAGCCAAGTAGAGTGGTGAACCTGCCTAAGTCAGAGCAAGAAGTAGGGCACGGGGGCAATTTATTGTTATaGCTGCAGATGTGCTTGGAA | + |
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Preference number: 4 (lower is better) Translates to: EPSRVVNLPKSEQEVGHGGNLLL*LQMCLE Trigger: TTCCAAGCACATCTGCAGCCATAACAATAAATTGCC...CCCGTGCCCTACTTCTTGCTCTGACTTAGGCAGGTTCACCACTCTACTTGGCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS-3UTR CCA 90 bp | GCGGAAGGATGGGAGCAAAGTAAGGCAGAGGACATAGGCAATGGGGTATCAATAGAAGAGGTTCATAGATaGGCACATGTTCTCACACCC | + |
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Preference number: 4 (lower is better) Translates to: AEGWEQSKAEDIGNGVSIEEVHR*AHVLTP Trigger: GGGTGTGAGAACATGTGCCCATCTATGAACCTCTTC...TATTGATACCCCATTGCCTATGTCCTCTGCCTTACTTTGCTCCCATCCTTCCGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS-3UTR GCA 90 bp | AAAAGAACATCTGCGGAAGGATGGGAGCAAAGTAAGGCAGAGGACATAGGCAATTGTTCTCCTGAAGAGTaGTCACCTGCAGAATGTTCA | + |
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Preference number: 4 (lower is better) Translates to: KRTSAEGWEQSKAEDIGNCSPEE*SPAECS Trigger: TGAACATTCTGCAGGTGAGCACTCTTCAGGAGAACA...ATTGCCTATGTCCTCTGCCTTACTTTGCTCCCATCCTTCCGCAGATGTTCTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS-3UTR GCA 90 bp | GCGGAAGGATGGGAGCAAAGTAAGGCAGAGGACATAGGCAATGGGGTATCAATAATTTATTGTTATGGCTaGAGATGTGCTTGGAAGTGG | + |
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Preference number: 4 (lower is better) Translates to: AEGWEQSKAEDIGNGVSIIYCYG*RCAWKW Trigger: CCACTTCCAAGCACATCTGCAGCCATAACAATAAAT...TATTGATACCCCATTGCCTATGTCCTCTGCCTTACTTTGCTCCCATCCTTCCGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS-3UTR GCA 90 bp | GCGGAAGGATGGGAGCAAAGTAAGGCAGAGGACATAGGCAATGGGGTATCAATAAGATCTTCTTTAACATaGACTGCTGGGAGTTTTGAG | + |
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Preference number: 4 (lower is better) Translates to: AEGWEQSKAEDIGNGVSIRSSLT*TAGSFE Trigger: CTCAAAACTCCCAGCAGTGCATGTTAAAGAAGATCT...TATTGATACCCCATTGCCTATGTCCTCTGCCTTACTTTGCTCCCATCCTTCCGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS-3UTR TCA 90 bp | GAGGACATAGGCAATGGGGTATCAATAAAGACAAGGTTTGAGCTTCTTATCTGGATGTTCTCACACCCTTaGACCATGAACTGGAGTTTT | + |
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Preference number: 4 (lower is better) Translates to: EDIGNGVSIKTRFELLIWMFSHP*TMNWSF Trigger: AAAACTCCAGTTCATGGTTCAAGGGTGTGAGAACAT...CCAGATAAGAAGCTCAAACCTTGTCTTTATTGATACCCCATTGCCTATGTCCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS-3UTR GCA 90 bp | AAAAGAACATCTGCGGAAGGATGGGAGCAAAGTAAGGCAGAGGACATAGGCAATTCCACGGAGACATTTTaGATCATCATTCATATAAGC | + |
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Preference number: 4 (lower is better) Translates to: KRTSAEGWEQSKAEDIGNSTETF*IIIHIS Trigger: GCTTATATGAATGATGATGCAAAATGTCTCCGTGGA...ATTGCCTATGTCCTCTGCCTTACTTTGCTCCCATCCTTCCGCAGATGTTCTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS GCA 90 bp | TGGTCACTTGAGGACTGTTCAGTTGCAGGTTGTTCACCTGAAGTGTaGTCGGTGGAAGTGTGCTCGCCCGAGGAGTGCTCCTCTGAAGTG | + |
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Preference number: 5 (lower is better) Translates to: WSLEDCSVAGCSPEV*SVEVCSPEECSSEV Trigger: CACTTCAGAGGAGCACTCCTCGGGCGAGCACACTTCCACCGAGCACACTTCAGGTGAACAACCTGCAACTGAACAGTCCTCAAGTGACCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS GCA 90 bp | TGTTCAGTTGCAGGTTGTTCACCTGAAGTGTGCTCGGTGGAAGTGTaGTCGCCCGAGGAGTGCTCCTCTGAAGTGTGTTCTGACAAGTGC | + |
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Preference number: 5 (lower is better) Translates to: CSVAGCSPEVCSVEV*SPEECSSEVCSDKC Trigger: GCACTTGTCAGAACACACTTCAGAGGAGCACTCCTCGGGCGAGCACACTTCCACCGAGCACACTTCAGGTGAACAACCTGCAACTGAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS CCA 90 bp | TTGAGGACTGTTCAGTTGCAGGTTGTTCACCTGAAGTGTGCTCGGTaGAAGTGTGCTCGCCCGAGGAGTGCTCCTCTGAAGTGTGTTCTG | + |
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Preference number: 5 (lower is better) Translates to: LRTVQLQVVHLKCAR*KCARPRSAPLKCVL Trigger: CAGAACACACTTCAGAGGAGCACTCCTCGGGCGAGCACACTTCCACCGAGCACACTTCAGGTGAACAACCTGCAACTGAACAGTCCTCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS GCA 90 bp | GTGTGCTCGCCCGAGGAGTGCTCCTCTGAAGTGTGTTCTGACAAGTaGTCTCCTGACATGTGGTCACCTGACATGTGTTCTGAAGACTGT | + |
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Preference number: 5 (lower is better) Translates to: VCSPEECSSEVCSDK*SPDMWSPDMCSEDC Trigger: ACAGTCTTCAGAACACATGTCAGGTGACCACATGTCAGGAGAGCACTTGTCAGAACACACTTCAGAGGAGCACTCCTCGGGCGAGCACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS-3UTR CAA 90 bp | GAGCCAAGTAGAGTGGTGAACCTGCCTAAGTCAGAGCAAGAAGTAGGGCACGGGCTACAGCATGCTCACTaGATTCCTGTTCACTTGAAC | + |
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Preference number: 5 (lower is better) Translates to: EPSRVVNLPKSEQEVGHGLQHAH*IPVHLN Trigger: GTTCAAGTGAACAGGAATCAAGTGAGCATGCTGTAG...CCCGTGCCCTACTTCTTGCTCTGACTTAGGCAGGTTCACCACTCTACTTGGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS-3UTR CAA 90 bp | AAAAGAACATCTGCGGAAGGATGGGAGCAAAGTAAGGCAGAGGACATAGGCAATACCTGGTGGTGCTCCTaGGGCAGATCCAAGCAGATA | + |
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Preference number: 5 (lower is better) Translates to: KRTSAEGWEQSKAEDIGNTWWCS*GRSKQI Trigger: TATCTGCTTGGATCTGCCCAAGGAGCACCACCAGGT...ATTGCCTATGTCCTCTGCCTTACTTTGCTCCCATCCTTCCGCAGATGTTCTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS-3UTR CAA 90 bp | GAAGGATGGGAGCAAAGTAAGGCAGAGGACATAGGCAATGGGGTATCAATAAAGCGGCATCTGAAGGGTTaGCGAGTGAGAGATACTCGC | + |
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Preference number: 5 (lower is better) Translates to: EGWEQSKAEDIGNGVSIKRHLKG*RVRDTR Trigger: GCGAGTATCTCTCACTCGCAAACCCTTCAGATGCCG...CTTTATTGATACCCCATTGCCTATGTCCTCTGCCTTACTTTGCTCCCATCCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS-3UTR CAA 90 bp | GCGGAAGGATGGGAGCAAAGTAAGGCAGAGGACATAGGCAATGGGGTATCAATACCGACAGCACATAATTaGCATTCTTGTTCCATGAGA | + |
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Preference number: 5 (lower is better) Translates to: AEGWEQSKAEDIGNGVSIPTAHN*HSCSMR Trigger: TCTCATGGAACAAGAATGCAAATTATGTGCTGTCGG...TATTGATACCCCATTGCCTATGTCCTCTGCCTTACTTTGCTCCCATCCTTCCGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS-3UTR CAA 90 bp | GAGGACATAGGCAATGGGGTATCAATAAAGACAAGGTTTGAGCTTCTTATCTGGTTGCTGAACCGAAGCTaGTTGGTCTACAGAGTCAAG | + |
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Preference number: 5 (lower is better) Translates to: EDIGNGVSIKTRFELLIWLLNRS*LVYRVK Trigger: CTTGACTCTGTAGACCAACAAGCTTCGGTTCAGCAA...CCAGATAAGAAGCTCAAACCTTGTCTTTATTGATACCCCATTGCCTATGTCCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS CCA 90 bp | GCACATAATTTGCATTCTTGTTCCATGAGAGAAGAGGTTCATAGATaGGCACATGTTCTCACACCCTTGAACCATGAACTGGAGTTTTCC | + |
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Preference number: 5 (lower is better) Translates to: AHNLHSCSMREEVHR*AHVLTPLNHELEFS Trigger: GGAAAACTCCAGTTCATGGTTCAAGGGTGTGAGAACATGTGCCCATCTATGAACCTCTTCTCTCATGGAACAAGAATGCAAATTATGTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS GCA 90 bp | CTGGGAGTTTTGAGTGGTGCATACTCCTTCTCCACGGAGACATTTTaGATCATCATTCATATAAGCACATGTGTGGCAATTTATTGTTAT | + |
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Preference number: 5 (lower is better) Translates to: LGVLSGAYSFSTETF*IIIHISTCVAIYCY Trigger: ATAACAATAAATTGCCACACATGTGCTTATATGAATGATGATGCAAAATGTCTCCGTGGAGAAGGAGTATGCACCACTCAAAACTCCCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS CCA 90 bp | ATAAGCACATGTGTGGCAATTTATTGTTATGGCTGCAGATGTGCTTaGAAGTGGTGTACTCATAGCATCATTTTCTTTGTCATTTGTCTC | + |
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Preference number: 5 (lower is better) Translates to: ISTCVAIYCYGCRCA*KWCTHSIIFFVICL Trigger: GAGACAAATGACAAAGAAAATGATGCTATGAGTACACCACTTCCAAGCACATCTGCAGCCATAACAATAAATTGCCACACATGTGCTTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS GCA 90 bp | ATCATCATTCATATAAGCACATGTGTGGCAATTTATTGTTATGGCTaGAGATGTGCTTGGAAGTGGTGTACTCATAGCATCATTTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: IIIHISTCVAIYCYG*RCAWKWCTHSIIFF Trigger: AAAGAAAATGATGCTATGAGTACACCACTTCCAAGCACATCTGCAGCCATAACAATAAATTGCCACACATGTGCTTATATGAATGATGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS GCA 72 bp | GCAGGTTGTTCACCTGAAGTGTGCTCGGTGGAAGTGTaGTCGCCCGAGGAGTGCTCCTCTGAAGTGTGTTCT | + |
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Preference number: 6 (lower is better) Translates to: AGCSPEVCSVEV*SPEECSSEVCS Trigger: AGAACACACTTCAGAGGAGCACTCCTCGGGCGAGCACACTTCCACCGAGCACACTTCAGGTGAACAACCTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS CAA 90 bp | CACCTGAAGATGCTTCGGAGGGCTGGTCACTTGAGGACTGTTCAGTaGCAGGTTGTTCACCTGAAGTGTGCTCGGTGGAAGTGTGCTCGC | + |
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Preference number: 6 (lower is better) Translates to: HLKMLRRAGHLRTVQ*QVVHLKCARWKCAR Trigger: GCGAGCACACTTCCACCGAGCACACTTCAGGTGAACAACCTGCAACTGAACAGTCCTCAAGTGACCAGCCCTCCGAAGCATCTTCAGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS GCA 72 bp | TACAGAGTCAAGAAGCTCCTCAGGCTGACCTGGTGGTaGTCCTTGGGCAGATCCAAGCAGATAAAGACCCAG | + |
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Preference number: 6 (lower is better) Translates to: YRVKKLLRLTWW*SLGRSKQIKTQ Trigger: CTGGGTCTTTATCTGCTTGGATCTGCCCAAGGAGCACCACCAGGTCAGCCTGAGGAGCTTCTTGACTCTGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS CCA 72 bp | GTCTACAGAGTCAAGAAGCTCCTCAGGCTGACCTGGTaGTGCTCCTTGGGCAGATCCAAGCAGATAAAGACC | + |
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Preference number: 6 (lower is better) Translates to: VYRVKKLLRLTW*CSLGRSKQIKT Trigger: GGTCTTTATCTGCTTGGATCTGCCCAAGGAGCACCACCAGGTCAGCCTGAGGAGCTTCTTGACTCTGTAGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS GCA 72 bp | CCCGAGGAGTGCTCCTCTGAAGTGTGTTCTGACAAGTaGTCTCCTGACATGTGGTCACCTGACATGTGTTCT | + |
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Preference number: 6 (lower is better) Translates to: PEECSSEVCSDK*SPDMWSPDMCS Trigger: AGAACACATGTCAGGTGACCACATGTCAGGAGAGCACTTGTCAGAACACACTTCAGAGGAGCACTCCTCGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS CCA 72 bp | TTGGTCTACAGAGTCAAGAAGCTCCTCAGGCTGACCTaGTGGTGCTCCTTGGGCAGATCCAAGCAGATAAAG | + |
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Preference number: 6 (lower is better) Translates to: LVYRVKKLLRLT*WCSLGRSKQIK Trigger: CTTTATCTGCTTGGATCTGCCCAAGGAGCACCACCAGGTCAGCCTGAGGAGCTTCTTGACTCTGTAGACCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS CAA 72 bp | CGGCATCTGAAGGGTTTGCGAGTGAGAGATACTCGCTaGAAAGTTGCTGAACCGAAGCTTGTTGGTCTACAG | + |
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Preference number: 6 (lower is better) Translates to: RHLKGLRVRDTR*KVAEPKLVGLQ Trigger: CTGTAGACCAACAAGCTTCGGTTCAGCAACTTTCAAGCGAGTATCTCTCACTCGCAAACCCTTCAGATGCCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS CAA 90 bp | ATAAAGCCTCGGCATCTGAAGGGTTTGCGAGTGAGAGATACTCGCTaGAAAGTTGCTGAACCGAAGCTTGTTGGTCTACAGAGTCAAGAA | + |
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Preference number: 6 (lower is better) Translates to: IKPRHLKGLRVRDTR*KVAEPKLVGLQSQE Trigger: TTCTTGACTCTGTAGACCAACAAGCTTCGGTTCAGCAACTTTCAAGCGAGTATCTCTCACTCGCAAACCCTTCAGATGCCGAGGCTTTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS CCA 72 bp | TCTGAAGTGTGTTCTGACAAGTGCTCTCCTGACATGTaGTCACCTGACATGTGTTCTGAAGACTGTTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: SEVCSDKCSPDM*SPDMCSEDCSP Trigger: AGGAGAACAGTCTTCAGAACACATGTCAGGTGACCACATGTCAGGAGAGCACTTGTCAGAACACACTTCAGA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS CAA 90 bp | CTGAAGAGTGCTCACCTGCAGAATGTTCAGCTACAGCATGCTCACTaGATTCCTGTTCACTTGAACTATGACCACTCAGAGTCTTCTCAT | + |
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Preference number: 6 (lower is better) Translates to: LKSAHLQNVQLQHAH*IPVHLNYDHSESSH Trigger: ATGAGAAGACTCTGAGTGGTCATAGTTCAAGTGAACAGGAATCAAGTGAGCATGCTGTAGCTGAACATTCTGCAGGTGAGCACTCTTCAG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS CAA 90 bp | TCTCATCTAAAGGAGTTTCATATAAAGCCTCGGCATCTGAAGGGTTaGCGAGTGAGAGATACTCGCTTGAAAGTTGCTGAACCGAAGCTT | + |
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Preference number: 6 (lower is better) Translates to: SHLKEFHIKPRHLKG*RVRDTRLKVAEPKL Trigger: AAGCTTCGGTTCAGCAACTTTCAAGCGAGTATCTCTCACTCGCAAACCCTTCAGATGCCGAGGCTTTATATGAAACTCCTTTAGATGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS TCA 72 bp | AAGAGGTTCATAGATGGGCACATGTTCTCACACCCTTaGACCATGAACTGGAGTTTTCCACCTTCAAAGATC | + |
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Preference number: 6 (lower is better) Translates to: KRFIDGHMFSHP*TMNWSFPPSKI Trigger: GATCTTTGAAGGTGGAAAACTCCAGTTCATGGTTCAAGGGTGTGAGAACATGTGCCCATCTATGAACCTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS CCA 72 bp | TTGCATTCTTGTTCCATGAGAGAAGAGGTTCATAGATaGGCACATGTTCTCACACCCTTGAACCATGAACTG | + |
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Preference number: 6 (lower is better) Translates to: LHSCSMREEVHR*AHVLTPLNHEL Trigger: CAGTTCATGGTTCAAGGGTGTGAGAACATGTGCCCATCTATGAACCTCTTCTCTCATGGAACAAGAATGCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS CAA 72 bp | AAGGAGTTTCATATAAAGCCTCGGCATCTGAAGGGTTaGCGAGTGAGAGATACTCGCTTGAAAGTTGCTGAA | + |
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Preference number: 6 (lower is better) Translates to: KEFHIKPRHLKG*RVRDTRLKVAE Trigger: TTCAGCAACTTTCAAGCGAGTATCTCTCACTCGCAAACCCTTCAGATGCCGAGGCTTTATATGAAACTCCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS GCA 72 bp | ACTGGAGTTTTCCACCTTCAAAGATCTTCTTTAACATaGACTGCTGGGAGTTTTGAGTGGTGCATACTCCTT | + |
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Preference number: 6 (lower is better) Translates to: TGVFHLQRSSLT*TAGSFEWCILL Trigger: AAGGAGTATGCACCACTCAAAACTCCCAGCAGTGCATGTTAAAGAAGATCTTTGAAGGTGGAAAACTCCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS GCA 72 bp | CATATAAGCACATGTGTGGCAATTTATTGTTATGGCTaGAGATGTGCTTGGAAGTGGTGTACTCATAGCATC | + |
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Preference number: 6 (lower is better) Translates to: HISTCVAIYCYG*RCAWKWCTHSI Trigger: GATGCTATGAGTACACCACTTCCAAGCACATCTGCAGCCATAACAATAAATTGCCACACATGTGCTTATATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS GCA 72 bp | TTGAGTGGTGCATACTCCTTCTCCACGGAGACATTTTaGATCATCATTCATATAAGCACATGTGTGGCAATT | + |
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Preference number: 6 (lower is better) Translates to: LSGAYSFSTETF*IIIHISTCVAI Trigger: AATTGCCACACATGTGCTTATATGAATGATGATGCAAAATGTCTCCGTGGAGAAGGAGTATGCACCACTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS CAA 72 bp | CTTGTTGCAGAGAGGTTCATTCCGACAGCACATAATTaGCATTCTTGTTCCATGAGAGAAGAGGTTCATAGA | + |
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Preference number: 6 (lower is better) Translates to: LVAERFIPTAHN*HSCSMREEVHR Trigger: TCTATGAACCTCTTCTCTCATGGAACAAGAATGCAAATTATGTGCTGTCGGAATGAACCTCTCTGCAACAAG 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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| CDS CCA 72 bp | GCAATTTATTGTTATGGCTGCAGATGTGCTTGGAAGTaGTGTACTCATAGCATCATTTTCTTTGTCATTTGT | + |
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Preference number: 6 (lower is better) Translates to: AIYCYGCRCAWK*CTHSIIFFVIC Trigger: ACAAATGACAAAGAAAATGATGCTATGAGTACACCACTTCCAAGCACATCTGCAGCCATAACAATAAATTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034620.5 |
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