RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ACP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002103

Ensembl transcript IDs: ENSMUST00000002172.14, ENSMUST00000150403.8, ENSMUST00000155418.2, ENSMUST00000238832.2, ENSMUST00000239169.2

Found 227 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTACGGTCCCTGAAGAGTCCAGCCCAGCTGAGGAGAGTCACCTCATaGTTCCATGTGTTTCACTCCTACCTGTGTCCTCCCACTGTCATC +
Preference number: 1 (lower is better)
Translates to: VRSLKSPAQLRRVTS*FHVFHSYLCPPTVI
Trigger: GATGACAGTGGGAGGACACAGGTAGGAGTGAAACACATGGAATCATGAGGTGACTCTCCTCAGCTGGGCTGGACTCTTCAGGGACCGTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR CCA 90 bp AATGTTATGTGTGTGCCTATACCCTCATGCCACAGTGGGCAGAGTTaGTTTTTCCCTCCCACAACATGGACTCTGGGGATCAAACTCAGG +
Preference number: 1 (lower is better)
Translates to: NVMCVPIPSCHSGQS*FFPPTTWTLGIKLR
Trigger: CCTGAGTTTGATCCCCAGAGTCCATGTTGTGGGAGGGAAAAACCAACTCTGCCCACTGTGGCATGAGGGTATAGGCACACACATAACATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR TCA 90 bp CAGACCTGCCTGTGGTTGACACTGACGGTAGCCTCAGCCAAAGGATaGCTTTGCTGTTGGATGACCCGAGTTCTTGATAGCCATATTTTA +
Preference number: 1 (lower is better)
Translates to: QTCLWLTLTVASAKG*LCCWMTRVLDSHIL
Trigger: TAAAATATGGCTATCAAGAACTCGGGTCATCCAACAGCAAAGTCATCCTTTGGCTGAGGCTACCGTCAGTGTCAACCACAGGCAGGTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR TCA 90 bp AGGATACTCCGGTATTACTTCGGTGAGACTTGGGCCCCCAAACAGTaGTGGGAGGAAGCAGGGAATTTCTCATTAGAAGTAGTCCCCATT +
Preference number: 1 (lower is better)
Translates to: RILRYYFGETWAPKQ*WEEAGNFSLEVVPI
Trigger: AATGGGGACTACTTCTAATGAGAAATTCCCTGCTTCCTCCCATCACTGTTTGGGGGCCCAAGTCTCACCGAAGTAATACCGGAGTATCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR CCA 90 bp CTGTTTCCTAGGCGACCTGGCATTCACGGCACAACCTCATTGTTGTaGGCCGATACCCAGATCCTAATCTTAAAAGTTGTGTTCCCTATG +
Preference number: 1 (lower is better)
Translates to: LFPRRPGIHGTTSLL*ADTQILILKVVFPM
Trigger: CATAGGGAACACAACTTTTAAGATTAGGATCTGGGTATCGGCCCACAACAATGAGGTTGTGCCGTGAATGCCAGGTCGCCTAGGAAACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR CCA 90 bp AGAAAGATCATGAAAGACTATGAAGATGGTGTGGGACAGCAATACTaGACCCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGT +
Preference number: 1 (lower is better)
Translates to: RKIMKDYEDGVGQQY*TPQMGTHSVRSGSC
Trigger: ACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGTCCAGTATTGCTGTCCCACACCATCTTCATAGTCTTTCATGATCTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR GCA 90 bp ACTCTGGGGATCAAACTCAGGTTATCAGGCTTGGTTGGGATCAGATaGCTTTATCTGCTGAGTGATCTAGTCAGCCCTCATACTTGTCTT +
Preference number: 1 (lower is better)
Translates to: TLGIKLRLSGLVGIR*LYLLSDLVSPHTCL
Trigger: AAGACAAGTATGAGGGCTGACTAGATCACTCAGCAGATAAAGGCATCTGATCCCAACCAAGCCTGATAACCTGAGTTTGATCCCCAGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR CCA 90 bp TCTTACTTTTGTAGCTCAATGAGTTCAATCCTATGGGAGACACACTaGCCTCTACTATGGGTGAGTAAAAGCAACTGTATCTCAAACTGT +
Preference number: 1 (lower is better)
Translates to: SYFCSSMSSILWETH*PLLWVSKSNCISNC
Trigger: ACAGTTTGAGATACAGTTGCTTTTACTCACCCATAGTAGAGGCCAGTGTGTCTCCCATAGGATTGAACTCATTGAGCTACAAAAGTAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR GCA 90 bp GGGCCACGGTCAAGGTGTACGGTCCCTGAAGAGTCCAGCCCAGCTGAGGAGAGTATGGTGAGCCCCAGGTaGCGCACACCCAGCCGAGCC +
Preference number: 2 (lower is better)
Translates to: GPRSRCTVPEESSPAEESMVSPR*RTPSRA
Trigger: GGCTCGGCTGGGTGTGCGGCACCTGGGGCTCACCAT...ACTCTCCTCAGCTGGGCTGGACTCTTCAGGGACCGTACACCTTGACCGTGGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR GCA 90 bp AAGATAAAGAGCAAGGCTCGGTGGAAGAGCAAGGCAGATCAAGTACCAGCTTCTATGGTGAGCCCCAGGTaGCGCACACCCAGCCGAGCC +
Preference number: 2 (lower is better)
Translates to: KIKSKARWKSKADQVPASMVSPR*RTPSRA
Trigger: GGCTCGGCTGGGTGTGCGGCACCTGGGGCTCACCAT...AGAAGCTGGTACTTGATCTGCCTTGCTCTTCCACCGAGCCTTGCTCTTTATCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR GCA 90 bp AGATTTTGCTCCAGAAAATTAAAGAGTAAACCAGCTACGCTCAGGGTCCCAGCTATGGTGAGCCCCAGGTaGCGCACACCCAGCCGAGCC +
Preference number: 2 (lower is better)
Translates to: RFCSRKLKSKPATLRVPAMVSPR*RTPSRA
Trigger: GGCTCGGCTGGGTGTGCGGCACCTGGGGCTCACCAT...AGCTGGGACCCTGAGCGTAGCTGGTTTACTCTTTAATTTTCTGGAGCAAAATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp TTCGTCCCAGGGCAGTGGGCAGTAAATATATCTTGGAGACAGTGGTATCTGGCCGGCTGGGATCAGCAATaGTCAGGAGCGAGGACTCAG +
Preference number: 2 (lower is better)
Translates to: FVPGQWAVNISWRQWYLAGWDQQ*SGARTQ
Trigger: CTGAGTCCTCGCTCCTGACCATTGCTGATCCCAGCC...GGCCAGATACCACTGTCTCCAAGATATATTTACTGCCCACTGCCCTGGGACGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp GGCAGAGTTGGTTTTTCCCTCCCACAACATGGACTCTGGGGATCAAACTCAGGTCCGGTATTACTTCGGTaGGACTTGGGCCCCCAAACA +
Preference number: 2 (lower is better)
Translates to: GRVGFSLPQHGLWGSNSGPVLLR*DLGPQT
Trigger: TGTTTGGGGGCCCAAGTCTCACCGAAGTAATACCGG...ACCTGAGTTTGATCCCCAGAGTCCATGTTGTGGGAGGGAAAAACCAACTCTGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR GCA 90 bp GGCAGAGTTGGTTTTTCCCTCCCACAACATGGACTCTGGGGATCAAACTCAGGTAAGACAGGGTTTCTGTaGAGACCAGGCTGGCCTGTG +
Preference number: 2 (lower is better)
Translates to: GRVGFSLPQHGLWGSNSGKTGFL*RPGWPV
Trigger: CACAGGCCAGCCTGGTCTGCACAGAAACCCTGTCTT...ACCTGAGTTTGATCCCCAGAGTCCATGTTGTGGGAGGGAAAAACCAACTCTGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp TCCCTCCCACAACATGGACTCTGGGGATCAAACTCAGGTTATCAGGCTTGGTTGCTGTGCAGACCAGGCTaGCCTGTGTGTGAGATTCTG +
Preference number: 2 (lower is better)
Translates to: SLPQHGLWGSNSGYQAWLLCRPG*PVCEIL
Trigger: CAGAATCTCACACACAGGCCAGCCTGGTCTGCACAG...CAACCAAGCCTGATAACCTGAGTTTGATCCCCAGAGTCCATGTTGTGGGAGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp GACTCTGGGGATCAAACTCAGGTTATCAGGCTTGGTTGGGATCAGATGCCTTTATGGGCCCCCAAACAGTaGTGGGAGGAAGCAGGGAAT +
Preference number: 2 (lower is better)
Translates to: DSGDQTQVIRLGWDQMPLWAPKQ*WEEAGN
Trigger: ATTCCCTGCTTCCTCCCATCACTGTTTGGGGGCCCA...TAAAGGCATCTGATCCCAACCAAGCCTGATAACCTGAGTTTGATCCCCAGAGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp GGCAGCTGTTTGTTAATAGGCCAAAAGTACCCAATTCTTAGGGTTGGAGCAGGGGGCTGGGATCAGCAATaGTCAGGAGCGAGGACTCAG +
Preference number: 2 (lower is better)
Translates to: GSCLLIGQKYPILRVGAGGWDQQ*SGARTQ
Trigger: CTGAGTCCTCGCTCCTGACCATTGCTGATCCCAGCC...CCCTGCTCCAACCCTAAGAATTGGGTACTTTTGGCCTATTAACAAACAGCTGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp GATGGAAGCTCAGGGAAGATGATGTGTCAGCTCTATGATCCAGGATACTCCGGTGCCTCAGCCAAAGGATaGCTTTGCTGTTGGATGACC +
Preference number: 2 (lower is better)
Translates to: DGSSGKMMCQLYDPGYSGASAKG*LCCWMT
Trigger: GGTCATCCAACAGCAAAGTCATCCTTTGGCTGAGGC...ACCGGAGTATCCTGGATCATAGAGCTGACACATCATCTTCCCTGAGCTTCCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR GCA 90 bp CTCTGGGGATCAAACTCAGGTTATCAGGCTTGGTTGGGATCAGATGCCTTTATCAAGACAGGGTTTCTGTaGAGACCAGGCTGGCCTGTG +
Preference number: 2 (lower is better)
Translates to: LWGSNSGYQAWLGSDAFIKTGFL*RPGWPV
Trigger: CACAGGCCAGCCTGGTCTGCACAGAAACCCTGTCTT...GATAAAGGCATCTGATCCCAACCAAGCCTGATAACCTGAGTTTGATCCCCAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp CTCTGGGGATCAAACTCAGGTTATCAGGCTTGGTTGGGATCAGATGCCTTTATCGTCTCCACCCCCAGCTaGAATTCAGGTGCATCAGGA +
Preference number: 2 (lower is better)
Translates to: LWGSNSGYQAWLGSDAFIVSTPS*NSGASG
Trigger: TCCTGATGCACCTGAATTCCAGCTGGGGGTGGAGAC...GATAAAGGCATCTGATCCCAACCAAGCCTGATAACCTGAGTTTGATCCCCAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR CAA 90 bp TGGACCCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTaGTTAATAGGCCAAAAGTACCCAATTCTTAGGGTTGGAGCAGGG +
Preference number: 2 (lower is better)
Translates to: WTPQMGTHSVRSGSC*LIGQKYPILRVGAG
Trigger: CCCTGCTCCAACCCTAAGAATTGGGTACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR CAA 90 bp CCTCCCACAACATGGACTCTGGGGATCAAACTCAGGTTATCAGGCTaGGTTGGGATCAGATGCCTTTATCTGCTGAGTGATCTAGTCAGC +
Preference number: 2 (lower is better)
Translates to: PPTTWTLGIKLRLSG*VGIRCLYLLSDLVS
Trigger: GCTGACTAGATCACTCAGCAGATAAAGGCATCTGATCCCAACCAAGCCTGATAACCTGAGTTTGATCCCCAGAGTCCATGTTGTGGGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR CAA 90 bp TCTCTGTTTCCTAGGCGACCTGGCATTCACGGCACAACCTCATTGTaGTGGGCCGATACCCAGATCCTAATCTTAAAAGTTGTGTTCCCT +
Preference number: 2 (lower is better)
Translates to: SLFPRRPGIHGTTSL*WADTQILILKVVFP
Trigger: AGGGAACACAACTTTTAAGATTAGGATCTGGGTATCGGCCCACAACAATGAGGTTGTGCCGTGAATGCCAGGTCGCCTAGGAAACAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR CAA 90 bp ACCTCTCTGTTTCCTAGGCGACCTGGCATTCACGGCACAACCTCATaGTTGTGGGCCGATACCCAGATCCTAATCTTAAAAGTTGTGTTC +
Preference number: 2 (lower is better)
Translates to: TSLFPRRPGIHGTTS*LWADTQILILKVVF
Trigger: GAACACAACTTTTAAGATTAGGATCTGGGTATCGGCCCACAACAATGAGGTTGTGCCGTGAATGCCAGGTCGCCTAGGAAACAGAGAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp CTCACTGTGTATGTATATAGTCCAGAAGAGGGCACTGTATCACCTGGAAGTGGAGCCTCAGCCAAAGGATaGCTTTGCTGTTGGATGACC +
Preference number: 2 (lower is better)
Translates to: LTVYVYSPEEGTVSPGSGASAKG*LCCWMT
Trigger: GGTCATCCAACAGCAAAGTCATCCTTTGGCTGAGGC...TCCACTTCCAGGTGATACAGTGCCCTCTTCTGGACTATATACATACACAGTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp CTCTGGGGATCAAACTCAGGTTATCAGGCTTGGTTGGGATCAGATGCCTTTATCTGGGAACACATTCTGTaGGGAGTGGCAGCTGTTTGT +
Preference number: 2 (lower is better)
Translates to: LWGSNSGYQAWLGSDAFIWEHIL*GVAAVC
Trigger: ACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCA...GATAAAGGCATCTGATCCCAACCAAGCCTGATAACCTGAGTTTGATCCCCAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR GCA 90 bp GGCAGAGTTGGTTTTTCCCTCCCACAACATGGACTCTGGGGATCAAACTCAGGTGTCCTCCAAGCCATTTaGCAAAGATATGGGCTAGAA +
Preference number: 2 (lower is better)
Translates to: GRVGFSLPQHGLWGSNSGVLQAI*QRYGLE
Trigger: TTCTAGCCCATATCTTTGGCAAATGGCTTGGAGGAC...ACCTGAGTTTGATCCCCAGAGTCCATGTTGTGGGAGGGAAAAACCAACTCTGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR GCA 90 bp GATGGAAGCTCAGGGAAGATGATGTGTCAGCTCTATGATCCAGGATACTCCGGTGTAGTCCCCATTTACTaGCTCTGTACTGCCTTCAAC +
Preference number: 2 (lower is better)
Translates to: DGSSGKMMCQLYDPGYSGVVPIY*LCTAFN
Trigger: GTTGAAGGCAGTACAGAGGCAGTAAATGGGGACTAC...ACCGGAGTATCCTGGATCATAGAGCTGACACATCATCTTCCCTGAGCTTCCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp AGGGAATTTCTCATTAGAAGTAGTCCCCATTTACTGCCTCTGTACTGCCTTCAAGGCTGGGATCAGCAATaGTCAGGAGCGAGGACTCAG +
Preference number: 2 (lower is better)
Translates to: REFLIRSSPHLLPLYCLQGWDQQ*SGARTQ
Trigger: CTGAGTCCTCGCTCCTGACCATTGCTGATCCCAGCC...TTGAAGGCAGTACAGAGGCAGTAAATGGGGACTACTTCTAATGAGAAATTCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp GATCAAACTCAGGTTATCAGGCTTGGTTGGGATCAGATGCCTTTATCTGCTGAGATAGCTAGCAAGTTCTaGGCATCCTGTCTCCACCCC +
Preference number: 2 (lower is better)
Translates to: DQTQVIRLGWDQMPLSAEIASKF*ASCLHP
Trigger: GGGGTGGAGACAGGATGCCCAGAACTTGCTAGCTAT...CTCAGCAGATAAAGGCATCTGATCCCAACCAAGCCTGATAACCTGAGTTTGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp CCTGTGTGTGAGATTCTGCGATCAAACATACAGCCTTGTGTATGCTATATAGGTCCGGTATTACTTCGGTaGGACTTGGGCCCCCAAACA +
Preference number: 2 (lower is better)
Translates to: PVCEILRSNIQPCVCYIGPVLLR*DLGPQT
Trigger: TGTTTGGGGGCCCAAGTCTCACCGAAGTAATACCGG...ACCTATATAGCATACACAAGGCTGTATGTTTGATCGCAGAATCTCACACACAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp GACTCTGGGGATCAAACTCAGGTTATCAGGCTTGGTTGGGATCAGATGCCTTTAACAACCTCATTGTTGTaGGCCGATACCCAGATCCTA +
Preference number: 2 (lower is better)
Translates to: DSGDQTQVIRLGWDQMPLTTSLL*ADTQIL
Trigger: TAGGATCTGGGTATCGGCCCACAACAATGAGGTTGT...TAAAGGCATCTGATCCCAACCAAGCCTGATAACCTGAGTTTGATCCCCAGAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp ACCCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCTTTAGTCCCAGGTCTTaGGTGAAATCTGAATGCTTG +
Preference number: 2 (lower is better)
Translates to: TPQMGTHSVRSGSCLLIGFSPRS*VKSECL
Trigger: CAAGCATTCAGATTTCACTCAAGACCTGGGACTAAA...GCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp TCTGAGACAGACCAGCAACAGAAGGTGTCATTCAGACTTCTTGTTTCTTCTAGGTGGGAACACATTCTGTaGGGAGTGGCAGCTGTTTGT +
Preference number: 2 (lower is better)
Translates to: SETDQQQKVSFRLLVSSRWEHIL*GVAAVC
Trigger: ACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCA...CCTAGAAGAAACAAGAAGTCTGAATGACACCTTCTGTTGCTGGTCTGTCTCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp GACTCTGGGGATCAAACTCAGGTTATCAGGCTTGGTTGGGATCAGATGCCTTTAGATCATGAAAGACTATaGAGATGGTGTGGGACAGCA +
Preference number: 2 (lower is better)
Translates to: DSGDQTQVIRLGWDQMPLDHERL*RWCGTA
Trigger: TGCTGTCCCACACCATCTTCATAGTCTTTCATGATC...TAAAGGCATCTGATCCCAACCAAGCCTGATAACCTGAGTTTGATCCCCAGAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp CTCTGGGGATCAAACTCAGGTTATCAGGCTTGGTTGGGATCAGATGCCTTTATCGGCCTCTACTATGGGTaGGTAAAAGCAACTGTATCT +
Preference number: 2 (lower is better)
Translates to: LWGSNSGYQAWLGSDAFIGLYYG*VKATVS
Trigger: AGATACAGTTGCTTTTACTCACCCATAGTAGAGGCC...GATAAAGGCATCTGATCCCAACCAAGCCTGATAACCTGAGTTTGATCCCCAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp GATCAAACTCAGGTTATCAGGCTTGGTTGGGATCAGATGCCTTTATCTGCTGAGGAAGCTCAGGGAAGATaGTGTGTCAGCTCTATGATC +
Preference number: 2 (lower is better)
Translates to: DQTQVIRLGWDQMPLSAEEAQGR*CVSSMI
Trigger: GATCATAGAGCTGACACATCATCTTCCCTGAGCTTC...CTCAGCAGATAAAGGCATCTGATCCCAACCAAGCCTGATAACCTGAGTTTGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR GCA 90 bp TTCGTCCCAGGGCAGTGGGCAGTAAATATATCTTGGAGACAGTGGTATCTGGCCATGCTGACATGTTACTaGTCTAGATTTTGCTCCAGA +
Preference number: 2 (lower is better)
Translates to: FVPGQWAVNISWRQWYLAMLTCY*SRFCSR
Trigger: TCTGGAGCAAAATCTAGAGCAGTAACATGTCAGCAT...GGCCAGATACCACTGTCTCCAAGATATATTTACTGCCCACTGCCCTGGGACGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp GATGGAAGCTCAGGGAAGATGATGTGTCAGCTCTATGATCCAGGATACTCCGGTGCAGTAAATATATCTTaGAGACAGTGGTATCTGGCC +
Preference number: 2 (lower is better)
Translates to: DGSSGKMMCQLYDPGYSGAVNIS*RQWYLA
Trigger: GGCCAGATACCACTGTCTCCAAGATATATTTACTGC...ACCGGAGTATCCTGGATCATAGAGCTGACACATCATCTTCCCTGAGCTTCCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp GACTCTGGGGATCAAACTCAGGTTATCAGGCTTGGTTGGGATCAGATGCCTTTAACATTCTGTGAGGAGTaGCAGCTGTTTGTTAATAGG +
Preference number: 2 (lower is better)
Translates to: DSGDQTQVIRLGWDQMPLTFCEE*QLFVNR
Trigger: CCTATTAACAAACAGCTGCCACTCCTCACAGAATGT...TAAAGGCATCTGATCCCAACCAAGCCTGATAACCTGAGTTTGATCCCCAGAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp TTTCTCATTAGAAGTAGTCCCCATTTACTGCCTCTGTACTGCCTTCAACCCAGCCACTGGCCTCTACTATaGGTGAGTAAAAGCAACTGT +
Preference number: 2 (lower is better)
Translates to: FLIRSSPHLLPLYCLQPSHWPLL*VSKSNC
Trigger: ACAGTTGCTTTTACTCACCCATAGTAGAGGCCAGTG...GCTGGGTTGAAGGCAGTACAGAGGCAGTAAATGGGGACTACTTCTAATGAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR GCA 90 bp CTCACTGTGTATGTATATAGTCCAGAAGAGGGCACTGTATCACCTGGAAGTGGACTGTGTGTGAGATTCTaGGATCAAACATACAGCCTT +
Preference number: 2 (lower is better)
Translates to: LTVYVYSPEEGTVSPGSGLCVRF*DQTYSL
Trigger: AAGGCTGTATGTTTGATCGCAGAATCTCACACACAG...TCCACTTCCAGGTGATACAGTGCCCTCTTCTGGACTATATACATACACAGTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp GATCAAACTCAGGTTATCAGGCTTGGTTGGGATCAGATGCCTTTATCTGCTGAGACATTCTGTGAGGAGTaGCAGCTGTTTGTTAATAGG +
Preference number: 2 (lower is better)
Translates to: DQTQVIRLGWDQMPLSAETFCEE*QLFVNR
Trigger: CCTATTAACAAACAGCTGCCACTCCTCACAGAATGT...CTCAGCAGATAAAGGCATCTGATCCCAACCAAGCCTGATAACCTGAGTTTGATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp TTGGTTTTTCCCTCCCACAACATGGACTCTGGGGATCAAACTCAGGTTATCAGGTATCATATTCTCATTTaGAGCCAAGAGGAAGATGGG +
Preference number: 2 (lower is better)
Translates to: LVFPSHNMDSGDQTQVIRYHILI*SQEEDG
Trigger: CCCATCTTCCTCTTGGCTCCAAATGAGAATATGATA...CCTGATAACCTGAGTTTGATCCCCAGAGTCCATGTTGTGGGAGGGAAAAACCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp CTATGGGAGACACACTGGCCTCTACTATGGGTGAGTAAAAGCAACTGTATCTCACCTAGGTCACCCATCTaGTTTTATTTTAGTCATGGC +
Preference number: 2 (lower is better)
Translates to: LWETHWPLLWVSKSNCISPRSPI*FYFSHG
Trigger: GCCATGACTAAAATAAAACCAGATGGGTGACCTAGG...TGAGATACAGTTGCTTTTACTCACCCATAGTAGAGGCCAGTGTGTCTCCCATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp TCTGAGACAGACCAGCAACAGAAGGTGTCATTCAGACTTCTTGTTTCTTCTAGGTTTAGTCCCAGGTCTTaGGTGAAATCTGAATGCTTG +
Preference number: 2 (lower is better)
Translates to: SETDQQQKVSFRLLVSSRFSPRS*VKSECL
Trigger: CAAGCATTCAGATTTCACTCAAGACCTGGGACTAAA...CCTAGAAGAAACAAGAAGTCTGAATGACACCTTCTGTTGCTGGTCTGTCTCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp CAGGTGTCTTTCTCAGTTGTTCTCCATCTTATTTTTGAAACGGTTTCTCACTGTTGGGAACACATTCTGTaGGGAGTGGCAGCTGTTTGT +
Preference number: 2 (lower is better)
Translates to: QVSFSVVLHLIFETVSHCWEHIL*GVAAVC
Trigger: ACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCA...ACAGTGAGAAACCGTTTCAAAAATAAGATGGAGAACAACTGAGAAAGACACCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR GCA 90 bp TTTCTCATTAGAAGTAGTCCCCATTTACTGCCTCTGTACTGCCTTCAACCCAGCATGCTGACATGTTACTaGTCTAGATTTTGCTCCAGA +
Preference number: 2 (lower is better)
Translates to: FLIRSSPHLLPLYCLQPSMLTCY*SRFCSR
Trigger: TCTGGAGCAAAATCTAGAGCAGTAACATGTCAGCAT...GCTGGGTTGAAGGCAGTACAGAGGCAGTAAATGGGGACTACTTCTAATGAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR GCA 90 bp TATATAGTCCAGAAGAGGGCACTGTATCACCTGGAAGTGGAGTTACAGACAGTTCAGCTGGAATTCAGGTaGATCAGGACAAGATTTGTA +
Preference number: 2 (lower is better)
Translates to: YIVQKRALYHLEVELQTVQLEFR*IRTRFV
Trigger: TACAAATCTTGTCCTGATGCACCTGAATTCCAGCTG...AACTGTCTGTAACTCCACTTCCAGGTGATACAGTGCCCTCTTCTGGACTATATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp AGGGAATTTCTCATTAGAAGTAGTCCCCATTTACTGCCTCTGTACTGCCTTCAAGGTAAGAGTGCTTCTTaGATGTCAGAAATGGGGAAG +
Preference number: 2 (lower is better)
Translates to: REFLIRSSPHLLPLYCLQGKSAS*MSEMGK
Trigger: CTTCCCCATTTCTGACATCCAAGAAGCACTCTTACC...TTGAAGGCAGTACAGAGGCAGTAAATGGGGACTACTTCTAATGAGAAATTCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp CTAGAGGTTGACAGCAGGTGTCTTTCTCAGTTGTTCTCCATCTTATTTTTGAAAAGGAGAGTCACCTCATaGTTCCATGTGTTTCACTCC +
Preference number: 2 (lower is better)
Translates to: LEVDSRCLSQLFSILFLKRRVTS*FHVFHS
Trigger: GGAGTGAAACACATGGAATCATGAGGTGACTCTCCT...TTTCAAAAATAAGATGGAGAACAACTGAGAAAGACACCTGCTGTCAACCTCTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp AGACAGACCAGCAACAGAAGGTGTCATTCAGACTTCTTGTTTCTTCTAGGTTATGATCATGAAAGACTATaGAGATGGTGTGGGACAGCA +
Preference number: 2 (lower is better)
Translates to: RQTSNRRCHSDFLFLLGYDHERL*RWCGTA
Trigger: TGCTGTCCCACACCATCTTCATAGTCTTTCATGATC...ATAACCTAGAAGAAACAAGAAGTCTGAATGACACCTTCTGTTGCTGGTCTGTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp TCTTTCTCAGTTGTTCTCCATCTTATTTTTGAAACGGTTTCTCACTGTACCTGGGAAGCTCAGGGAAGATaGTGTGTCAGCTCTATGATC +
Preference number: 2 (lower is better)
Translates to: SFSVVLHLIFETVSHCTWEAQGR*CVSSMI
Trigger: GATCATAGAGCTGACACATCATCTTCCCTGAGCTTC...CCAGGTACAGTGAGAAACCGTTTCAAAAATAAGATGGAGAACAACTGAGAAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp CCTGTGTGTGAGATTCTGCGATCAAACATACAGCCTTGTGTATGCTATATAGGTACTTTAAATTCTGACTaGCCTCTCTGTTTCCTAGGC +
Preference number: 2 (lower is better)
Translates to: PVCEILRSNIQPCVCYIGTLNSD*PLCFLG
Trigger: GCCTAGGAAACAGAGAGGTCAGTCAGAATTTAAAGT...ACCTATATAGCATACACAAGGCTGTATGTTTGATCGCAGAATCTCACACACAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp TGTGGGACTAGGATGCTGACATGTTACTGCTCTAGATTTTGCTCCAGAAAATTAGGTAAGAGTGCTTCTTaGATGTCAGAAATGGGGAAG +
Preference number: 2 (lower is better)
Translates to: CGTRMLTCYCSRFCSRKLGKSAS*MSEMGK
Trigger: CTTCCCCATTTCTGACATCCAAGAAGCACTCTTACC...TAATTTTCTGGAGCAAAATCTAGAGCAGTAACATGTCAGCATCCTAGTCCCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp CCTGTGTGTGAGATTCTGCGATCAAACATACAGCCTTGTGTATGCTATATAGGTGCAGTAAATATATCTTaGAGACAGTGGTATCTGGCC +
Preference number: 2 (lower is better)
Translates to: PVCEILRSNIQPCVCYIGAVNIS*RQWYLA
Trigger: GGCCAGATACCACTGTCTCCAAGATATATTTACTGC...ACCTATATAGCATACACAAGGCTGTATGTTTGATCGCAGAATCTCACACACAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp CTAGAGGTTGACAGCAGGTGTCTTTCTCAGTTGTTCTCCATCTTATTTTTGAAAACAACCTCATTGTTGTaGGCCGATACCCAGATCCTA +
Preference number: 2 (lower is better)
Translates to: LEVDSRCLSQLFSILFLKTTSLL*ADTQIL
Trigger: TAGGATCTGGGTATCGGCCCACAACAATGAGGTTGT...TTTCAAAAATAAGATGGAGAACAACTGAGAAAGACACCTGCTGTCAACCTCTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp TACATATATTGTCATATACACTCACTGTGTATGTATATAGTCCAGAAGAGGGCACTTTGTAGACCAGGCTaGCCTCGAACTCAAATCCGC +
Preference number: 2 (lower is better)
Translates to: YIYCHIHSLCMYIVQKRALCRPG*PRTQIR
Trigger: GCGGATTTGAGTTCGAGGCCAGCCTGGTCTACAAAG...TGCCCTCTTCTGGACTATATACATACACAGTGAGTGTATATGACAATATATGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp TCTTTCTCAGTTGTTCTCCATCTTATTTTTGAAACGGTTTCTCACTGTACCTGGCACTGGCCTCTACTATaGGTGAGTAAAAGCAACTGT +
Preference number: 2 (lower is better)
Translates to: SFSVVLHLIFETVSHCTWHWPLL*VSKSNC
Trigger: ACAGTTGCTTTTACTCACCCATAGTAGAGGCCAGTG...CCAGGTACAGTGAGAAACCGTTTCAAAAATAAGATGGAGAACAACTGAGAAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp CAGGTGTCTTTCTCAGTTGTTCTCCATCTTATTTTTGAAACGGTTTCTCACTGTGACAATAGATGTGTTTaGTGGAAGCTCAGGGAAGAT +
Preference number: 2 (lower is better)
Translates to: QVSFSVVLHLIFETVSHCDNRCV*WKLRED
Trigger: ATCTTCCCTGAGCTTCCATCAAACACATCTATTGTC...ACAGTGAGAAACCGTTTCAAAAATAAGATGGAGAACAACTGAGAAAGACACCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp CTAGAGGTTGACAGCAGGTGTCTTTCTCAGTTGTTCTCCATCTTATTTTTGAAAACTTTAAATTCTGACTaGCCTCTCTGTTTCCTAGGC +
Preference number: 2 (lower is better)
Translates to: LEVDSRCLSQLFSILFLKTLNSD*PLCFLG
Trigger: GCCTAGGAAACAGAGAGGTCAGTCAGAATTTAAAGT...TTTCAAAAATAAGATGGAGAACAACTGAGAAAGACACCTGCTGTCAACCTCTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp CTAGAGGTTGACAGCAGGTGTCTTTCTCAGTTGTTCTCCATCTTATTTTTGAAAGCAGTAAATATATCTTaGAGACAGTGGTATCTGGCC +
Preference number: 2 (lower is better)
Translates to: LEVDSRCLSQLFSILFLKAVNIS*RQWYLA
Trigger: GGCCAGATACCACTGTCTCCAAGATATATTTACTGC...TTTCAAAAATAAGATGGAGAACAACTGAGAAAGACACCTGCTGTCAACCTCTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR GCA 90 bp TACATATATTGTCATATACACTCACTGTGTATGTATATAGTCCAGAAGAGGGCAGTCCTCCAAGCCATTTaGCAAAGATATGGGCTAGAA +
Preference number: 2 (lower is better)
Translates to: YIYCHIHSLCMYIVQKRAVLQAI*QRYGLE
Trigger: TTCTAGCCCATATCTTTGGCAAATGGCTTGGAGGAC...TGCCCTCTTCTGGACTATATACATACACAGTGAGTGTATATGACAATATATGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR TCA 90 bp TACATATATTGTCATATACACTCACTGTGTATGTATATAGTCCAGAAGAGGGCAAAAATACTTTGTGTGTaGAGGCTAGAGGTTGACAGC +
Preference number: 2 (lower is better)
Translates to: YIYCHIHSLCMYIVQKRAKILCV*RLEVDS
Trigger: GCTGTCAACCTCTAGCCTTCACACACAAAGTATTTT...TGCCCTCTTCTGGACTATATACATACACAGTGAGTGTATATGACAATATATGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CCA 90 bp TACATATATTGTCATATACACTCACTGTGTATGTATATAGTCCAGAAGAGGGCATATCATATTCTCATTTaGAGCCAAGAGGAAGATGGG +
Preference number: 2 (lower is better)
Translates to: YIYCHIHSLCMYIVQKRAYHILI*SQEEDG
Trigger: CCCATCTTCCTCTTGGCTCCAAATGAGAATATGATA...TGCCCTCTTCTGGACTATATACATACACAGTGAGTGTATATGACAATATATGTA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR CCA 72 bp GGAAGGCTAACCCTGTCCCTGGGCTGGGATCAGCAATaGTCAGGAGCGAGGACTCAGCCCACCTCCCCTAGG +
Preference number: 3 (lower is better)
Translates to: GRLTLSLGWDQQ*SGARTQPTSPR
Trigger: CCTAGGGGAGGTGGGCTGAGTCCTCGCTCCTGACCATTGCTGATCCCAGCCCAGGGACAGGGTTAGCCTTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002172.14
ENSMUST00000239169.2
3UTR TCA 72 bp TCTAAGCCTGGCCCTATCCGAGGCTGCAGTGGAGGCTaGATTCACCGTAGCTCTGCCCTATTCGTCCCAGGG +
Preference number: 3 (lower is better)
Translates to: SKPGPIRGCSGG*IHRSSALFVPG
Trigger: CCCTGGGACGAATAGGGCAGAGCTACGGTGAATTCAGCCTCCACTGCAGCCTCGGATAGGGCCAGGCTTAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR GCA 72 bp TTTGTAGACCAGGCTGGCCTCGAACTCAAATCCGCTTaGCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTG +
Preference number: 3 (lower is better)
Translates to: FVDQAGLELKSA*LCLPSAGIKGV
Trigger: CACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAAGCGGATTTGAGTTCGAGGCCAGCCTGGTCTACAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CAA 90 bp GGGCCACGGTCAAGGTGTACGGTCCCTGAAGAGTCCAGCCCAGCTGAGGAGAGTGTGAAATCTGAATGCTaGTCTGCATCTCAAGTCCTT +
Preference number: 3 (lower is better)
Translates to: GPRSRCTVPEESSPAEESVKSEC*SASQVL
Trigger: AAGGACTTGAGATGCAGACAAGCATTCAGATTTCAC...ACTCTCCTCAGCTGGGCTGGACTCTTCAGGGACCGTACACCTTGACCGTGGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR TCA 72 bp CTGAAGAGTCCAGCCCAGCTGAGGAGAGTCACCTCATaGTTCCATGTGTTTCACTCCTACCTGTGTCCTCCC +
Preference number: 3 (lower is better)
Translates to: LKSPAQLRRVTS*FHVFHSYLCPP
Trigger: GGGAGGACACAGGTAGGAGTGAAACACATGGAATCATGAGGTGACTCTCCTCAGCTGGGCTGGACTCTTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR CCA 72 bp TGTGTGCCTATACCCTCATGCCACAGTGGGCAGAGTTaGTTTTTCCCTCCCACAACATGGACTCTGGGGATC +
Preference number: 3 (lower is better)
Translates to: CVPIPSCHSGQS*FFPPTTWTLGI
Trigger: GATCCCCAGAGTCCATGTTGTGGGAGGGAAAAACCAACTCTGCCCACTGTGGCATGAGGGTATAGGCACACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR TCA 72 bp AGCTCTATGATCCAGGATACTCCGGTATTACTTCGGTaGGACTTGGGCCCCCAAACAGTGATGGGAGGAAGC +
Preference number: 3 (lower is better)
Translates to: SSMIQDTPVLLR*DLGPQTVMGGS
Trigger: GCTTCCTCCCATCACTGTTTGGGGGCCCAAGTCTCACCGAAGTAATACCGGAGTATCCTGGATCATAGAGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CAA 90 bp CTCTGGGGATCAAACTCAGGTTATCAGGCTTGGTTGGGATCAGATGCCTTTATCGGCACAACCTCATTGTaGTGGGCCGATACCCAGATC +
Preference number: 3 (lower is better)
Translates to: LWGSNSGYQAWLGSDAFIGTTSL*WADTQI
Trigger: GATCTGGGTATCGGCCCACAACAATGAGGTTGTGCC...GATAAAGGCATCTGATCCCAACCAAGCCTGATAACCTGAGTTTGATCCCCAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR TCA 72 bp CTGTGGTTGACACTGACGGTAGCCTCAGCCAAAGGATaGCTTTGCTGTTGGATGACCCGAGTTCTTGATAGC +
Preference number: 3 (lower is better)
Translates to: LWLTLTVASAKG*LCCWMTRVLDS
Trigger: GCTATCAAGAACTCGGGTCATCCAACAGCAAAGTCATCCTTTGGCTGAGGCTACCGTCAGTGTCAACCACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR TCA 72 bp GTCAGTCTGTTAGTTCCCCAAGACAGCCCCAACCTCTaGGACAGACCAGCAACAGAAGGTGTCATTCAGACT +
Preference number: 3 (lower is better)
Translates to: VSLLVPQDSPNL*DRPATEGVIQT
Trigger: AGTCTGAATGACACCTTCTGTTGCTGGTCTGTCTCAGAGGTTGGGGCTGTCTTGGGGAACTAACAGACTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR TCA 72 bp GACAGGGTTTCTGTGCAGACCAGGCTGGCCTGTGTGTaGGATTCTGCGATCAAACATACAGCCTTGTGTATG +
Preference number: 3 (lower is better)
Translates to: DRVSVQTRLACV*DSAIKHTALCM
Trigger: CATACACAAGGCTGTATGTTTGATCGCAGAATCTCACACACAGGCCAGCCTGGTCTGCACAGAAACCCTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR CCA 72 bp GGCAGAGTTGGTTTTTCCCTCCCACAACATGGACTCTaGGGATCAAACTCAGGTTATCAGGCTTGGTTGGGA +
Preference number: 3 (lower is better)
Translates to: GRVGFSLPQHGL*GSNSGYQAWLG
Trigger: TCCCAACCAAGCCTGATAACCTGAGTTTGATCCCCAGAGTCCATGTTGTGGGAGGGAAAAACCAACTCTGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR CCA 72 bp CACAGTGGGCAGAGTTGGTTTTTCCCTCCCACAACATaGACTCTGGGGATCAAACTCAGGTTATCAGGCTTG +
Preference number: 3 (lower is better)
Translates to: HSGQSWFFPPTT*TLGIKLRLSGL
Trigger: CAAGCCTGATAACCTGAGTTTGATCCCCAGAGTCCATGTTGTGGGAGGGAAAAACCAACTCTGCCCACTGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR CCA 72 bp ATTCACCGTAGCTCTGCCCTATTCGTCCCAGGGCAGTaGGCAGTAAATATATCTTGGAGACAGTGGTATCTG +
Preference number: 3 (lower is better)
Translates to: IHRSSALFVPGQ*AVNISWRQWYL
Trigger: CAGATACCACTGTCTCCAAGATATATTTACTGCCCACTGCCCTGGGACGAATAGGGCAGAGCTACGGTGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR TCA 72 bp CGGTATTACTTCGGTGAGACTTGGGCCCCCAAACAGTaGTGGGAGGAAGCAGGGAATTTCTCATTAGAAGTA +
Preference number: 3 (lower is better)
Translates to: RYYFGETWAPKQ*WEEAGNFSLEV
Trigger: TACTTCTAATGAGAAATTCCCTGCTTCCTCCCATCACTGTTTGGGGGCCCAAGTCTCACCGAAGTAATACCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR TCA 72 bp TGGTGGTGGTGGTTCATGCCTTTAATCCCAGTAGTTTaGGGCCATCTGGATCTACAGAGCAAGTTTCAGGAC +
Preference number: 3 (lower is better)
Translates to: WWWWFMPLIPVV*GHLDLQSKFQD
Trigger: GTCCTGAAACTTGCTCTGTAGATCCAGATGGCCTCAAACTACTGGGATTAAAGGCATGAACCACCACCACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
3UTR CCA 72 bp CTGGACCCCACAGATGGGAACACATTCTGTGAGGAGTaGCAGCTGTTTGTTAATAGGCCAAAAGTACCCAAT +
Preference number: 3 (lower is better)
Translates to: LDPTDGNTFCEE*QLFVNRPKVPN
Trigger: ATTGGGTACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGTCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR CCA 72 bp ATGAAAGACTATGAAGATGGTGTGGGACAGCAATACTaGACCCCACAGATGGGAACACATTCTGTGAGGAGT +
Preference number: 3 (lower is better)
Translates to: MKDYEDGVGQQY*TPQMGTHSVRS
Trigger: ACTCCTCACAGAATGTGTTCCCATCTGTGGGGTCCAGTATTGCTGTCCCACACCATCTTCATAGTCTTTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CAA 90 bp CTCACTGTGTATGTATATAGTCCAGAAGAGGGCACTGTATCACCTGGAAGTGGAGGCAGTAAATATATCTaGGAGACAGTGGTATCTGGC +
Preference number: 3 (lower is better)
Translates to: LTVYVYSPEEGTVSPGSGGSKYI*ETVVSG
Trigger: GCCAGATACCACTGTCTCCAAGATATATTTACTGCC...TCCACTTCCAGGTGATACAGTGCCCTCTTCTGGACTATATACATACACAGTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR TCA 72 bp CAGCTTCACACCGATACTCTTACTTTTGTAGCTCAATaGGTTCAATCCTATGGGAGACACACTGGCCTCTAC +
Preference number: 3 (lower is better)
Translates to: QLHTDTLTFVAQ*VQSYGRHTGLY
Trigger: GTAGAGGCCAGTGTGTCTCCCATAGGATTGAACTCATTGAGCTACAAAAGTAAGAGTATCGGTGTGAAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR GCA 72 bp ATCAAACTCAGGTTATCAGGCTTGGTTGGGATCAGATaGCTTTATCTGCTGAGTGATCTAGTCAGCCCTCAT +
Preference number: 3 (lower is better)
Translates to: IKLRLSGLVGIR*LYLLSDLVSPH
Trigger: ATGAGGGCTGACTAGATCACTCAGCAGATAAAGGCATCTGATCCCAACCAAGCCTGATAACCTGAGTTTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR GCA 72 bp GCGATCAAACATACAGCCTTGTGTATGCTATATAGGTaGTCTGCCACAGAACTGGATATCCAGCCCTTAAAA +
Preference number: 3 (lower is better)
Translates to: AIKHTALCMLYR*SATELDIQPLK
Trigger: TTTTAAGGGCTGGATATCCAGTTCTGTGGCAGAGCACCTATATAGCATACACAAGGCTGTATGTTTGATCGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR CCA 72 bp CTTGGAGACAGTGGTATCTGGCCTAGGTCACCCATCTaGTTTTATTTTAGTCATGGCAATGTCAGTCTGTTA +
Preference number: 3 (lower is better)
Translates to: LGDSGIWPRSPI*FYFSHGNVSLL
Trigger: TAACAGACTGACATTGCCATGACTAAAATAAAACCAGATGGGTGACCTAGGCCAGATACCACTGTCTCCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR CCA 72 bp TGTAGCTCAATGAGTTCAATCCTATGGGAGACACACTaGCCTCTACTATGGGTGAGTAAAAGCAACTGTATC +
Preference number: 3 (lower is better)
Translates to: CSSMSSILWETH*PLLWVSKSNCI
Trigger: GATACAGTTGCTTTTACTCACCCATAGTAGAGGCCAGTGTGTCTCCCATAGGATTGAACTCATTGAGCTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR TCA 72 bp GCAGGTGTCTTTCTCAGTTGTTCTCCATCTTATTTTTaGAACGGTTTCTCACTGTACCTGGAACCCACTGAT +
Preference number: 3 (lower is better)
Translates to: AGVFLSCSPSYF*NGFSLYLEPTD
Trigger: ATCAGTGGGTTCCAGGTACAGTGAGAAACCGTTTCAAAAATAAGATGGAGAACAACTGAGAAAGACACCTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CAA 90 bp AGACAGACCAGCAACAGAAGGTGTCATTCAGACTTCTTGTTTCTTCTAGGTTATAGGAGTGGCAGCTGTTaGTTAATAGGCCAAAAGTAC +
Preference number: 3 (lower is better)
Translates to: RQTSNRRCHSDFLFLLGYRSGSC*LIGQKY
Trigger: GTACTTTTGGCCTATTAACAAACAGCTGCCACTCCT...ATAACCTAGAAGAAACAAGAAGTCTGAATGACACCTTCTGTTGCTGGTCTGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR GCA 72 bp CTGAGTGATCTAGTCAGCCCTCATACTTGTCTTATATaGAGTATTGGATTCTTCTTGACCTATGAGCTGTTA +
Preference number: 3 (lower is better)
Translates to: LSDLVSPHTCLI*SIGFFLTYELL
Trigger: TAACAGCTCATAGGTCAAGAAGAATCCAATACTGCATATAAGACAAGTATGAGGGCTGACTAGATCACTCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR-3UTR CAA 90 bp CTAGAGGTTGACAGCAGGTGTCTTTCTCAGTTGTTCTCCATCTTATTTTTGAAATTATCATATTCTCATTaGGAGCCAAGAGGAAGATGG +
Preference number: 3 (lower is better)
Translates to: LEVDSRCLSQLFSILFLKLSYSH*EPRGRW
Trigger: CCATCTTCCTCTTGGCTCCAAATGAGAATATGATAA...TTTCAAAAATAAGATGGAGAACAACTGAGAAAGACACCTGCTGTCAACCTCTAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR GCA 72 bp AAGGGATACTGTGGGACTAGGATGCTGACATGTTACTaGTCTAGATTTTGCTCCAGAAAATTAAAGAGTAAA +
Preference number: 3 (lower is better)
Translates to: KGYCGTRMLTCY*SRFCSRKLKSK
Trigger: TTTACTCTTTAATTTTCTGGAGCAAAATCTAGAGCAGTAACATGTCAGCATCCTAGTCCCACAGTATCCCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp CTGTCCCTGGGCTGGGATCAGCAATGGTCAGGAGCGAGGACTCAGCCCACCTCCTGGCCCAGCTCCCAGTaGTGTAGCATCCCTTCCTTG +
Preference number: 4 (lower is better)
Translates to: LSLGWDQQWSGARTQPTSWPSSQ*CSIPSL
Trigger: CAAGGAAGGGATGCTACAGCACTGGGAGCTGGGCCA...GGAGGTGGGCTGAGTCCTCGCTCCTGACCATTGCTGATCCCAGCCCAGGGACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp GGGCCACGGTCAAGGTGTACGGTCCCTGAAGAGTCCAGCCCAGCTGAGGAGAGTCAGAGGGAAGGGGACTaGGTGGTTGTCAAGCATGGT +
Preference number: 4 (lower is better)
Translates to: GPRSRCTVPEESSPAEESQREGD*VVVKHG
Trigger: ACCATGCTTGACAACCACTCAGTCCCCTTCCCTCTG...ACTCTCCTCAGCTGGGCTGGACTCTTCAGGGACCGTACACCTTGACCGTGGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238832.2
CDS-3UTR TCA 90 bp GTAAACATCAGGCATGAAGATGGTGAGCCCCAGGTGCCGCACACCCAGCCGAGCTGGCCTCAGCACTCATaGGAGTACGATCGAAGTCTG +
Preference number: 4 (lower is better)
Translates to: VNIRHEDGEPQVPHTQPSWPQHS*EYDRSL
Trigger: CAGACTTCGATCGTACTCTCATGAGTGCTGAGGCCA...GCTCGGCTGGGTGTGCGGCACCTGGGGCTCACCATCTTCATGCCTGATGTTTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp GGGCCACGGTCAAGGTGTACGGTCCCTGAAGAGTCCAGCCCAGCTGAGGAGAGTTTCTGTACTTGCTCGTaGATCCCGAAGAGGAAGAGG +
Preference number: 4 (lower is better)
Translates to: GPRSRCTVPEESSPAEESFCTCS*IPKRKR
Trigger: CCTCTTCCTCTTCGGGATCCACGAGCAAGTACAGAA...ACTCTCCTCAGCTGGGCTGGACTCTTCAGGGACCGTACACCTTGACCGTGGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp CTGTCCCTGGGCTGGGATCAGCAATGGTCAGGAGCGAGGACTCAGCCCACCTCCAGAAGCTTAGGGAATTaGGAGGTAGTTGCCATTAGG +
Preference number: 4 (lower is better)
Translates to: LSLGWDQQWSGARTQPTSRSLGN*EVVAIR
Trigger: CCTAATGGCAACTACCTCTCAATTCCCTAAGCTTCT...GGAGGTGGGCTGAGTCCTCGCTCCTGACCATTGCTGATCCCAGCCCAGGGACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp TCCCTCCCACAACATGGACTCTGGGGATCAAACTCAGGTTATCAGGCTTGGTTGAGCTGGCTCAGACGCTaGACGGTTTGGGGTGAGGCC +
Preference number: 4 (lower is better)
Translates to: SLPQHGLWGSNSGYQAWLSWLRR*TVWGEA
Trigger: GGCCTCACCCCAAACCGTGCAGCGTCTGAGCCAGCT...CAACCAAGCCTGATAACCTGAGTTTGATCCCCAGAGTCCATGTTGTGGGAGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp CTGTCCCTGGGCTGGGATCAGCAATGGTCAGGAGCGAGGACTCAGCCCACCTCCACATTCAATGCCATTTaGAGAGCAACCAGGGTAGTG +
Preference number: 4 (lower is better)
Translates to: LSLGWDQQWSGARTQPTSTFNAI*RATRVV
Trigger: CACTACCCTGGTTGCTCTGCAAATGGCATTGAATGT...GGAGGTGGGCTGAGTCCTCGCTCCTGACCATTGCTGATCCCAGCCCAGGGACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp GTAAACATCAGGCATGAAGATGGTGAGCCCCAGGTGCCGCACACCCAGCCGAGCAGGGATAGGCTGCCATaGAATGTTAGGGTTGAAGTG +
Preference number: 4 (lower is better)
Translates to: VNIRHEDGEPQVPHTQPSRDRLP*NVRVEV
Trigger: CACTTCAACCCTAACATTTCATGGCAGCCTATCCCT...GCTCGGCTGGGTGTGCGGCACCTGGGGCTCACCATCTTCATGCCTGATGTTTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp CCAACAGGGTTTCTGAGTAGATCTAGTACTGACCTGGTAAGAGTGCTTCTTGGACTGCACGGTTTGGGGTaGGGCCCAGGGCGGCAGAAG +
Preference number: 4 (lower is better)
Translates to: PTGFLSRSSTDLVRVLLGLHGLG*GPGRQK
Trigger: CTTCTGCCGCCCTGGGCCTCACCCCAAACCGTGCAG...TCCAAGAAGCACTCTTACCAGGTCAGTACTAGATCTACTCAGAAACCCTGTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp TTTCTCATTAGAAGTAGTCCCCATTTACTGCCTCTGTACTGCCTTCAACCCAGCCTGCACGGTTTGGGGTaGGGCCCAGGGCGGCAGAAG +
Preference number: 4 (lower is better)
Translates to: FLIRSSPHLLPLYCLQPSLHGLG*GPGRQK
Trigger: CTTCTGCCGCCCTGGGCCTCACCCCAAACCGTGCAG...GCTGGGTTGAAGGCAGTACAGAGGCAGTAAATGGGGACTACTTCTAATGAGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp ACCCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCAGCTGGCTCAGACGCTaGACGGTTTGGGGTGAGGCC +
Preference number: 4 (lower is better)
Translates to: TPQMGTHSVRSGSCLLIGSWLRR*TVWGEA
Trigger: GGCCTCACCCCAAACCGTGCAGCGTCTGAGCCAGCT...GCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp TTTCTCATTAGAAGTAGTCCCCATTTACTGCCTCTGTACTGCCTTCAACCCAGCCGTTGCCGCAGGGCCTaGCCCAGCTCCCAGTGCTGT +
Preference number: 4 (lower is better)
Translates to: FLIRSSPHLLPLYCLQPSRCRRA*PSSQCC
Trigger: ACAGCACTGGGAGCTGGGCCAGGCCCTGCGGCAACG...GCTGGGTTGAAGGCAGTACAGAGGCAGTAAATGGGGACTACTTCTAATGAGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp GTAAACATCAGGCATGAAGATGGTGAGCCCCAGGTGCCGCACACCCAGCCGAGCCTCATAACGGGGACATaGACCCAAAGGAAACTTCAG +
Preference number: 4 (lower is better)
Translates to: VNIRHEDGEPQVPHTQPSLITGT*TQRKLQ
Trigger: CTGAAGTTTCCTTTGGGTCCATGTCCCCGTTATGAG...GCTCGGCTGGGTGTGCGGCACCTGGGGCTCACCATCTTCATGCCTGATGTTTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp GTAAACATCAGGCATGAAGATGGTGAGCCCCAGGTGCCGCACACCCAGCCGAGCATATGTCTTCACTGGTaGCCGATCTCCATGTCGATA +
Preference number: 4 (lower is better)
Translates to: VNIRHEDGEPQVPHTQPSICLHW*PISMSI
Trigger: TATCGACATGGAGATCGGTCACCAGTGAAGACATAT...GCTCGGCTGGGTGTGCGGCACCTGGGGCTCACCATCTTCATGCCTGATGTTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp TATATAGTCCAGAAGAGGGCACTGTATCACCTGGAAGTGGAGTTACAGACAGTTCTGCACGGTTTGGGGTaGGGCCCAGGGCGGCAGAAG +
Preference number: 4 (lower is better)
Translates to: YIVQKRALYHLEVELQTVLHGLG*GPGRQK
Trigger: CTTCTGCCGCCCTGGGCCTCACCCCAAACCGTGCAG...AACTGTCTGTAACTCCACTTCCAGGTGATACAGTGCCCTCTTCTGGACTATATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp TTCGTCCCAGGGCAGTGGGCAGTAAATATATCTTGGAGACAGTGGTATCTGGCCTGGCCCAGCTCCCAGTaGTGTAGCATCCCTTCCTTG +
Preference number: 4 (lower is better)
Translates to: FVPGQWAVNISWRQWYLAWPSSQ*CSIPSL
Trigger: CAAGGAAGGGATGCTACAGCACTGGGAGCTGGGCCA...GGCCAGATACCACTGTCTCCAAGATATATTTACTGCCCACTGCCCTGGGACGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp TATATAGTCCAGAAGAGGGCACTGTATCACCTGGAAGTGGAGTTACAGACAGTTCGTTGCCGCAGGGCCTaGCCCAGCTCCCAGTGCTGT +
Preference number: 4 (lower is better)
Translates to: YIVQKRALYHLEVELQTVRCRRA*PSSQCC
Trigger: ACAGCACTGGGAGCTGGGCCAGGCCCTGCGGCAACG...AACTGTCTGTAACTCCACTTCCAGGTGATACAGTGCCCTCTTCTGGACTATATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp GTAAACATCAGGCATGAAGATGGTGAGCCCCAGGTGCCGCACACCCAGCCGAGCTCTGTTCTGATACTCTaGTGTCTGCCGAGTCTCATT +
Preference number: 4 (lower is better)
Translates to: VNIRHEDGEPQVPHTQPSSVLIL*CLPSLI
Trigger: AATGAGACTCGGCAGACACCAGAGTATCAGAACAGA...GCTCGGCTGGGTGTGCGGCACCTGGGGCTCACCATCTTCATGCCTGATGTTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp GGGCTAGAAGATAAAGAGCAAGGCTCGGTGGAAGAGCAAGGCAGATCAAGTACCATGCCAAGAAGGAACTaGAGAAGAGCCGCCTGGCTC +
Preference number: 4 (lower is better)
Translates to: GLEDKEQGSVEEQGRSSTMPRRN*RRAAWL
Trigger: GAGCCAGGCGGCTCTTCTCCAGTTCCTTCTTGGCAT...GGTACTTGATCTGCCTTGCTCTTCCACCGAGCCTTGCTCTTTATCTTCTAGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp TGTTTCACTCCTACCTGTGTCCTCCCACTGTCATCCAGGTACAGCCCAAGTATCATGCCAAGAAGGAACTaGAGAAGAGCCGCCTGGCTC +
Preference number: 4 (lower is better)
Translates to: CFTPTCVLPLSSRYSPSIMPRRN*RRAAWL
Trigger: GAGCCAGGCGGCTCTTCTCCAGTTCCTTCTTGGCAT...GATACTTGGGCTGTACCTGGATGACAGTGGGAGGACACAGGTAGGAGTGAAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp GGCAGAGTTGGTTTTTCCCTCCCACAACATGGACTCTGGGGATCAAACTCAGGTATGCCAAGAAGGAACTaGAGAAGAGCCGCCTGGCTC +
Preference number: 4 (lower is better)
Translates to: GRVGFSLPQHGLWGSNSGMPRRN*RRAAWL
Trigger: GAGCCAGGCGGCTCTTCTCCAGTTCCTTCTTGGCAT...ACCTGAGTTTGATCCCCAGAGTCCATGTTGTGGGAGGGAAAAACCAACTCTGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp CCTGTGTGTGAGATTCTGCGATCAAACATACAGCCTTGTGTATGCTATATAGGTCGTTGCCGCAGGGCCTaGCCCAGCTCCCAGTGCTGT +
Preference number: 4 (lower is better)
Translates to: PVCEILRSNIQPCVCYIGRCRRA*PSSQCC
Trigger: ACAGCACTGGGAGCTGGGCCAGGCCCTGCGGCAACG...ACCTATATAGCATACACAAGGCTGTATGTTTGATCGCAGAATCTCACACACAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp TGTTTCACTCCTACCTGTGTCCTCCCACTGTCATCCAGGTACAGCCCAAGTATCTGGCCTCAGCACTCATaGGAGTACGATCGAAGTCTG +
Preference number: 4 (lower is better)
Translates to: CFTPTCVLPLSSRYSPSIWPQHS*EYDRSL
Trigger: CAGACTTCGATCGTACTCTCATGAGTGCTGAGGCCA...GATACTTGGGCTGTACCTGGATGACAGTGGGAGGACACAGGTAGGAGTGAAACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp GGGCCACGGTCAAGGTGTACGGTCCCTGAAGAGTCCAGCCCAGCTGAGGAGAGTAAAGTACATCTCGACTaGGAAATTCCCATTATCTTC +
Preference number: 4 (lower is better)
Translates to: GPRSRCTVPEESSPAEESKVHLD*EIPIIF
Trigger: GAAGATAATGGGAATTTCTCAGTCGAGATGTACTTT...ACTCTCCTCAGCTGGGCTGGACTCTTCAGGGACCGTACACCTTGACCGTGGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp TTCGTCCCAGGGCAGTGGGCAGTAAATATATCTTGGAGACAGTGGTATCTGGCCGGGAAGGGGACTGAGTaGTTGTCAAGCATGGTCTTC +
Preference number: 4 (lower is better)
Translates to: FVPGQWAVNISWRQWYLAGKGTE*LSSMVF
Trigger: GAAGACCATGCTTGACAACCACTCAGTCCCCTTCCC...GGCCAGATACCACTGTCTCCAAGATATATTTACTGCCCACTGCCCTGGGACGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238832.2
CDS-3UTR TCA 90 bp GGCAGCTGTTTGTTAATAGGCCAAAAGTACCCAATTCTTAGGGTTGGAGCAGGGCCTTCCTTGGTTAGCTaGCCAAATCCCTGGGGCCAT +
Preference number: 4 (lower is better)
Translates to: GSCLLIGQKYPILRVGAGPSLVS*PNPWGH
Trigger: ATGGCCCCAGGGATTTGGTCAGCTAACCAAGGAAGG...CCCTGCTCCAACCCTAAGAATTGGGTACTTTTGGCCTATTAACAAACAGCTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp GGGCTAGAAGATAAAGAGCAAGGCTCGGTGGAAGAGCAAGGCAGATCAAGTACCAGAGGAAGAGGAAGCTaGAGTCCTTTAGCTGGCTCA +
Preference number: 4 (lower is better)
Translates to: GLEDKEQGSVEEQGRSSTRGRGS*SPLAGS
Trigger: TGAGCCAGCTAAAGGACTTCAGCTTCCTCTTCCTCT...GGTACTTGATCTGCCTTGCTCTTCCACCGAGCCTTGCTCTTTATCTTCTAGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp TCCCTCCCACAACATGGACTCTGGGGATCAAACTCAGGTTATCAGGCTTGGTTGAGAGGAAGAGGAAGCTaGAGTCCTTTAGCTGGCTCA +
Preference number: 4 (lower is better)
Translates to: SLPQHGLWGSNSGYQAWLRGRGS*SPLAGS
Trigger: TGAGCCAGCTAAAGGACTTCAGCTTCCTCTTCCTCT...CAACCAAGCCTGATAACCTGAGTTTGATCCCCAGAGTCCATGTTGTGGGAGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp GGCAGAGTTGGTTTTTCCCTCCCACAACATGGACTCTGGGGATCAAACTCAGGTGCCACAGACAGCCAATaGCACAATTACCTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: GRVGFSLPQHGLWGSNSGATDSQ*HNYLCV
Trigger: GACACAGAGGTAATTGTGGCATTGGCTGTCTGTGGC...ACCTGAGTTTGATCCCCAGAGTCCATGTTGTGGGAGGGAAAAACCAACTCTGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp GGGCTAGAAGATAAAGAGCAAGGCTCGGTGGAAGAGCAAGGCAGATCAAGTACCAGTGCTGAACTTCATTaGGAGGGAAGAGTCCAGCCA +
Preference number: 4 (lower is better)
Translates to: GLEDKEQGSVEEQGRSSTSAELH*EGRVQP
Trigger: TGGCTGGACTCTTCCCTCCCAATGAAGTTCAGCACT...GGTACTTGATCTGCCTTGCTCTTCCACCGAGCCTTGCTCTTTATCTTCTAGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp TTCGTCCCAGGGCAGTGGGCAGTAAATATATCTTGGAGACAGTGGTATCTGGCCTCACCGTTAGGCACATaGCAAGAAGGAACTGGAGAA +
Preference number: 4 (lower is better)
Translates to: FVPGQWAVNISWRQWYLASPLGT*QEGTGE
Trigger: TTCTCCAGTTCCTTCTTGGCATGTGCCTAACGGTGA...GGCCAGATACCACTGTCTCCAAGATATATTTACTGCCCACTGCCCTGGGACGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp AAGATAAAGAGCAAGGCTCGGTGGAAGAGCAAGGCAGATCAAGTACCAGCTTCTAGCTGGCACTCCTTCTaGCAGTCCTTGGGTATGACA +
Preference number: 4 (lower is better)
Translates to: KIKSKARWKSKADQVPASSWHSF*QSLGMT
Trigger: TGTCATACCCAAGGACTGGCAGAAGGAGTGCCAGCT...AGAAGCTGGTACTTGATCTGCCTTGCTCTTCCACCGAGCCTTGCTCTTTATCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp GACCCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGTTCTGTACTTGCTCGTaGATCCCGAAGAGGAAGAGG +
Preference number: 4 (lower is better)
Translates to: DPTDGNTFCEEWQLFVNRFCTCS*IPKRKR
Trigger: CCTCTTCCTCTTCGGGATCCACGAGCAAGTACAGAA...CCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp GATGGAAGCTCAGGGAAGATGATGTGTCAGCTCTATGATCCAGGATACTCCGGTAGGGATAGGCTGCCATaGAATGTTAGGGTTGAAGTG +
Preference number: 4 (lower is better)
Translates to: DGSSGKMMCQLYDPGYSGRDRLP*NVRVEV
Trigger: CACTTCAACCCTAACATTTCATGGCAGCCTATCCCT...ACCGGAGTATCCTGGATCATAGAGCTGACACATCATCTTCCCTGAGCTTCCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp TTCGTCCCAGGGCAGTGGGCAGTAAATATATCTTGGAGACAGTGGTATCTGGCCAGAAGCTTAGGGAATTaGGAGGTAGTTGCCATTAGG +
Preference number: 4 (lower is better)
Translates to: FVPGQWAVNISWRQWYLARSLGN*EVVAIR
Trigger: CCTAATGGCAACTACCTCTCAATTCCCTAAGCTTCT...GGCCAGATACCACTGTCTCCAAGATATATTTACTGCCCACTGCCCTGGGACGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp GACCCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGTCACCGTTAGGCACATaGCAAGAAGGAACTGGAGAA +
Preference number: 4 (lower is better)
Translates to: DPTDGNTFCEEWQLFVNRSPLGT*QEGTGE
Trigger: TTCTCCAGTTCCTTCTTGGCATGTGCCTAACGGTGA...CCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp GATGGAAGCTCAGGGAAGATGATGTGTCAGCTCTATGATCCAGGATACTCCGGTAGCAGCCCATGGGTTTaGTCACAAAAGAGTGTGTCA +
Preference number: 4 (lower is better)
Translates to: DGSSGKMMCQLYDPGYSGSSPWV*SQKSVS
Trigger: TGACACACTCTTTTGTGAGCAAACCCATGGGCTGCT...ACCGGAGTATCCTGGATCATAGAGCTGACACATCATCTTCCCTGAGCTTCCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp AAATCTGAATGCTTGTCTGCATCTCAAGTCCTTAGGGAATATAGAAGAGGCAAAAGCTGGCTCAGACGCTaGACGGTTTGGGGTGAGGCC +
Preference number: 4 (lower is better)
Translates to: KSECLSASQVLREYRRGKSWLRR*TVWGEA
Trigger: GGCCTCACCCCAAACCGTGCAGCGTCTGAGCCAGCT...TTTGCCTCTTCTATATTCCCTAAGGACTTGAGATGCAGACAAGCATTCAGATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp TCCCTCCCACAACATGGACTCTGGGGATCAAACTCAGGTTATCAGGCTTGGTTGTCTGTTCTGATACTCTaGTGTCTGCCGAGTCTCATT +
Preference number: 4 (lower is better)
Translates to: SLPQHGLWGSNSGYQAWLSVLIL*CLPSLI
Trigger: AATGAGACTCGGCAGACACCAGAGTATCAGAACAGA...CAACCAAGCCTGATAACCTGAGTTTGATCCCCAGAGTCCATGTTGTGGGAGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp CTATGGGAGACACACTGGCCTCTACTATGGGTGAGTAAAAGCAACTGTATCTCACTGAAGTCCTTTAGCTaGCTCAGACGCTGCACGGTT +
Preference number: 4 (lower is better)
Translates to: LWETHWPLLWVSKSNCISLKSFS*LRRCTV
Trigger: AACCGTGCAGCGTCTGAGCCAGCTAAAGGACTTCAG...TGAGATACAGTTGCTTTTACTCACCCATAGTAGAGGCCAGTGTGTCTCCCATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp AGATTTTGCTCCAGAAAATTAAAGAGTAAACCAGCTACGCTCAGGGTCCCAGCTAAGGAAATCCTGCAGTaGGCAACGGTGAGGACAGCC +
Preference number: 4 (lower is better)
Translates to: RFCSRKLKSKPATLRVPAKEILQ*ATVRTA
Trigger: GGCTGTCCTCACCGTTGCCCACTGCAGGATTTCCTT...AGCTGGGACCCTGAGCGTAGCTGGTTTACTCTTTAATTTTCTGGAGCAAAATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp TGTTTCACTCCTACCTGTGTCCTCCCACTGTCATCCAGGTACAGCCCAAGTATCTACGATCGAAGTCTGTaGTTCGCACATAAACCTCTT +
Preference number: 4 (lower is better)
Translates to: CFTPTCVLPLSSRYSPSIYDRSL*FAHKPL
Trigger: AAGAGGTTTATGTGCGAAGCACAGACTTCGATCGTA...GATACTTGGGCTGTACCTGGATGACAGTGGGAGGACACAGGTAGGAGTGAAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp GGCAGAGTTGGTTTTTCCCTCCCACAACATGGACTCTGGGGATCAAACTCAGGTTACGATCGAAGTCTGTaGTTCGCACATAAACCTCTT +
Preference number: 4 (lower is better)
Translates to: GRVGFSLPQHGLWGSNSGYDRSL*FAHKPL
Trigger: AAGAGGTTTATGTGCGAAGCACAGACTTCGATCGTA...ACCTGAGTTTGATCCCCAGAGTCCATGTTGTGGGAGGGAAAAACCAACTCTGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp CTCACTGTGTATGTATATAGTCCAGAAGAGGGCACTGTATCACCTGGAAGTGGAAGTGCTGAACTTCATTaGGAGGGAAGAGTCCAGCCA +
Preference number: 4 (lower is better)
Translates to: LTVYVYSPEEGTVSPGSGSAELH*EGRVQP
Trigger: TGGCTGGACTCTTCCCTCCCAATGAAGTTCAGCACT...TCCACTTCCAGGTGATACAGTGCCCTCTTCTGGACTATATACATACACAGTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp AGATTTTGCTCCAGAAAATTAAAGAGTAAACCAGCTACGCTCAGGGTCCCAGCTCTGAAGTCCTTTAGCTaGCTCAGACGCTGCACGGTT +
Preference number: 4 (lower is better)
Translates to: RFCSRKLKSKPATLRVPALKSFS*LRRCTV
Trigger: AACCGTGCAGCGTCTGAGCCAGCTAAAGGACTTCAG...AGCTGGGACCCTGAGCGTAGCTGGTTTACTCTTTAATTTTCTGGAGCAAAATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp GGCAGCTGTTTGTTAATAGGCCAAAAGTACCCAATTCTTAGGGTTGGAGCAGGGATATGTCTTCACTGGTaGCCGATCTCCATGTCGATA +
Preference number: 4 (lower is better)
Translates to: GSCLLIGQKYPILRVGAGICLHW*PISMSI
Trigger: TATCGACATGGAGATCGGTCACCAGTGAAGACATAT...CCCTGCTCCAACCCTAAGAATTGGGTACTTTTGGCCTATTAACAAACAGCTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp AGGGAATTTCTCATTAGAAGTAGTCCCCATTTACTGCCTCTGTACTGCCTTCAATGGCCTCAGCACTCATaGGAGTACGATCGAAGTCTG +
Preference number: 4 (lower is better)
Translates to: REFLIRSSPHLLPLYCLQWPQHS*EYDRSL
Trigger: CAGACTTCGATCGTACTCTCATGAGTGCTGAGGCCA...TTGAAGGCAGTACAGAGGCAGTAAATGGGGACTACTTCTAATGAGAAATTCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp TTTCTCATTAGAAGTAGTCCCCATTTACTGCCTCTGTACTGCCTTCAACCCAGCTCACCGTTAGGCACATaGCAAGAAGGAACTGGAGAA +
Preference number: 4 (lower is better)
Translates to: FLIRSSPHLLPLYCLQPSSPLGT*QEGTGE
Trigger: TTCTCCAGTTCCTTCTTGGCATGTGCCTAACGGTGA...GCTGGGTTGAAGGCAGTACAGAGGCAGTAAATGGGGACTACTTCTAATGAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp GGCAGCTGTTTGTTAATAGGCCAAAAGTACCCAATTCTTAGGGTTGGAGCAGGGTCTGTTCTGATACTCTaGTGTCTGCCGAGTCTCATT +
Preference number: 4 (lower is better)
Translates to: GSCLLIGQKYPILRVGAGSVLIL*CLPSLI
Trigger: AATGAGACTCGGCAGACACCAGAGTATCAGAACAGA...CCCTGCTCCAACCCTAAGAATTGGGTACTTTTGGCCTATTAACAAACAGCTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp TATATAGTCCAGAAGAGGGCACTGTATCACCTGGAAGTGGAGTTACAGACAGTTGGCAGAAGCAGCCCATaGGTTTGCTCACAAAAGAGT +
Preference number: 4 (lower is better)
Translates to: YIVQKRALYHLEVELQTVGRSSP*VCSQKS
Trigger: ACTCTTTTGTGAGCAAACCCATGGGCTGCTTCTGCC...AACTGTCTGTAACTCCACTTCCAGGTGATACAGTGCCCTCTTCTGGACTATATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp AGGGAATTTCTCATTAGAAGTAGTCCCCATTTACTGCCTCTGTACTGCCTTCAACTGAAGTCCTTTAGCTaGCTCAGACGCTGCACGGTT +
Preference number: 4 (lower is better)
Translates to: REFLIRSSPHLLPLYCLQLKSFS*LRRCTV
Trigger: AACCGTGCAGCGTCTGAGCCAGCTAAAGGACTTCAG...TTGAAGGCAGTACAGAGGCAGTAAATGGGGACTACTTCTAATGAGAAATTCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
3UTR CAA 72 bp ACATGGACTCTGGGGATCAAACTCAGGTTATCAGGCTaGGTTGGGATCAGATGCCTTTATCTGCTGAGTGAT +
Preference number: 4 (lower is better)
Translates to: TWTLGIKLRLSG*VGIRCLYLLSD
Trigger: ATCACTCAGCAGATAAAGGCATCTGATCCCAACCAAGCCTGATAACCTGAGTTTGATCCCCAGAGTCCATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp CTAGAGGTTGACAGCAGGTGTCTTTCTCAGTTGTTCTCCATCTTATTTTTGAAACCTTCCTTGGTTAGCTaGCCAAATCCCTGGGGCCAT +
Preference number: 4 (lower is better)
Translates to: LEVDSRCLSQLFSILFLKPSLVS*PNPWGH
Trigger: ATGGCCCCAGGGATTTGGTCAGCTAACCAAGGAAGG...TTTCAAAAATAAGATGGAGAACAACTGAGAAAGACACCTGCTGTCAACCTCTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp TTTAGAGAAAGCCAGTGTCCAACACAGTACACGGTAAACATCAGGCATGAAGATAGAGGAAGAGGAAGCTaGAGTCCTTTAGCTGGCTCA +
Preference number: 4 (lower is better)
Translates to: FRESQCPTQYTVNIRHEDRGRGS*SPLAGS
Trigger: TGAGCCAGCTAAAGGACTTCAGCTTCCTCTTCCTCT...ATCTTCATGCCTGATGTTTACCGTGTACTGTGTTGGACACTGGCTTTCTCTAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp CCTGTGTGTGAGATTCTGCGATCAAACATACAGCCTTGTGTATGCTATATAGGTCCTGATAGGGGTCCTTaGGATATGTCTTCACTGGTG +
Preference number: 4 (lower is better)
Translates to: PVCEILRSNIQPCVCYIGPDRGP*DMSSLV
Trigger: CACCAGTGAAGACATATCCCAAGGACCCCTATCAGG...ACCTATATAGCATACACAAGGCTGTATGTTTGATCGCAGAATCTCACACACAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp TCTGAGACAGACCAGCAACAGAAGGTGTCATTCAGACTTCTTGTTTCTTCTAGGCTCATAACGGGGACATaGACCCAAAGGAAACTTCAG +
Preference number: 4 (lower is better)
Translates to: SETDQQQKVSFRLLVSSRLITGT*TQRKLQ
Trigger: CTGAAGTTTCCTTTGGGTCCATGTCCCCGTTATGAG...CCTAGAAGAAACAAGAAGTCTGAATGACACCTTCTGTTGCTGGTCTGTCTCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp AAATCTGAATGCTTGTCTGCATCTCAAGTCCTTAGGGAATATAGAAGAGGCAAAAAGGAAATCCTGCAGTaGGCAACGGTGAGGACAGCC +
Preference number: 4 (lower is better)
Translates to: KSECLSASQVLREYRRGKKEILQ*ATVRTA
Trigger: GGCTGTCCTCACCGTTGCCCACTGCAGGATTTCCTT...TTTGCCTCTTCTATATTCCCTAAGGACTTGAGATGCAGACAAGCATTCAGATTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp GACAATGTCCTCCAAGCCATTTGCCAAAGATATGGGCTAGAAGATAAAGAGCAAAGCAGCCCATGGGTTTaGTCACAAAAGAGTGTGTCA +
Preference number: 4 (lower is better)
Translates to: DNVLQAICQRYGLEDKEQSSPWV*SQKSVS
Trigger: TGACACACTCTTTTGTGAGCAAACCCATGGGCTGCT...TTGCTCTTTATCTTCTAGCCCATATCTTTGGCAAATGGCTTGGAGGACATTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp TCTGAGACAGACCAGCAACAGAAGGTGTCATTCAGACTTCTTGTTTCTTCTAGGACATTCAATGCCATTTaGAGAGCAACCAGGGTAGTG +
Preference number: 4 (lower is better)
Translates to: SETDQQQKVSFRLLVSSRTFNAI*RATRVV
Trigger: CACTACCCTGGTTGCTCTGCAAATGGCATTGAATGT...CCTAGAAGAAACAAGAAGTCTGAATGACACCTTCTGTTGCTGGTCTGTCTCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp CAGGTGTCTTTCTCAGTTGTTCTCCATCTTATTTTTGAAACGGTTTCTCACTGTAGCTGGCACTCCTTCTaGCAGTCCTTGGGTATGACA +
Preference number: 4 (lower is better)
Translates to: QVSFSVVLHLIFETVSHCSWHSF*QSLGMT
Trigger: TGTCATACCCAAGGACTGGCAGAAGGAGTGCCAGCT...ACAGTGAGAAACCGTTTCAAAAATAAGATGGAGAACAACTGAGAAAGACACCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp CTAGAGGTTGACAGCAGGTGTCTTTCTCAGTTGTTCTCCATCTTATTTTTGAAAAGCTGGCACTCCTTCTaGCAGTCCTTGGGTATGACA +
Preference number: 4 (lower is better)
Translates to: LEVDSRCLSQLFSILFLKSWHSF*QSLGMT
Trigger: TGTCATACCCAAGGACTGGCAGAAGGAGTGCCAGCT...TTTCAAAAATAAGATGGAGAACAACTGAGAAAGACACCTGCTGTCAACCTCTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp AGACAGACCAGCAACAGAAGGTGTCATTCAGACTTCTTGTTTCTTCTAGGTTATTTCTGTACTTGCTCGTaGATCCCGAAGAGGAAGAGG +
Preference number: 4 (lower is better)
Translates to: RQTSNRRCHSDFLFLLGYFCTCS*IPKRKR
Trigger: CCTCTTCCTCTTCGGGATCCACGAGCAAGTACAGAA...ATAACCTAGAAGAAACAAGAAGTCTGAATGACACCTTCTGTTGCTGGTCTGTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp TGTGGGACTAGGATGCTGACATGTTACTGCTCTAGATTTTGCTCCAGAAAATTAAGGGATAGGCTGCCATaGAATGTTAGGGTTGAAGTG +
Preference number: 4 (lower is better)
Translates to: CGTRMLTCYCSRFCSRKLRDRLP*NVRVEV
Trigger: CACTTCAACCCTAACATTTCATGGCAGCCTATCCCT...TAATTTTCTGGAGCAAAATCTAGAGCAGTAACATGTCAGCATCCTAGTCCCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp CCTGTGTGTGAGATTCTGCGATCAAACATACAGCCTTGTGTATGCTATATAGGTACATTCAATGCCATTTaGAGAGCAACCAGGGTAGTG +
Preference number: 4 (lower is better)
Translates to: PVCEILRSNIQPCVCYIGTFNAI*RATRVV
Trigger: CACTACCCTGGTTGCTCTGCAAATGGCATTGAATGT...ACCTATATAGCATACACAAGGCTGTATGTTTGATCGCAGAATCTCACACACAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp CTAGAGGTTGACAGCAGGTGTCTTTCTCAGTTGTTCTCCATCTTATTTTTGAAAGCCACAGACAGCCAATaGCACAATTACCTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: LEVDSRCLSQLFSILFLKATDSQ*HNYLCV
Trigger: GACACAGAGGTAATTGTGGCATTGGCTGTCTGTGGC...TTTCAAAAATAAGATGGAGAACAACTGAGAAAGACACCTGCTGTCAACCTCTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp ATCATATTCTCATTTGGAGCCAAGAGGAAGATGGGTCACAGAAAGATCATGAAACCTGATAGGGGTCCTTaGGATATGTCTTCACTGGTG +
Preference number: 4 (lower is better)
Translates to: IIFSFGAKRKMGHRKIMKPDRGP*DMSSLV
Trigger: CACCAGTGAAGACATATCCCAAGGACCCCTATCAGG...TTTCATGATCTTTCTGTGACCCATCTTCCTCTTGGCTCCAAATGAGAATATGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp CTAGAGGTTGACAGCAGGTGTCTTTCTCAGTTGTTCTCCATCTTATTTTTGAAAGGCAGAAGCAGCCCATaGGTTTGCTCACAAAAGAGT +
Preference number: 4 (lower is better)
Translates to: LEVDSRCLSQLFSILFLKGRSSP*VCSQKS
Trigger: ACTCTTTTGTGAGCAAACCCATGGGCTGCTTCTGCC...TTTCAAAAATAAGATGGAGAACAACTGAGAAAGACACCTGCTGTCAACCTCTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp CAGGTGTCTTTCTCAGTTGTTCTCCATCTTATTTTTGAAACGGTTTCTCACTGTAGCAGCCCATGGGTTTaGTCACAAAAGAGTGTGTCA +
Preference number: 4 (lower is better)
Translates to: QVSFSVVLHLIFETVSHCSSPWV*SQKSVS
Trigger: TGACACACTCTTTTGTGAGCAAACCCATGGGCTGCT...ACAGTGAGAAACCGTTTCAAAAATAAGATGGAGAACAACTGAGAAAGACACCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp AAATCTGAATGCTTGTCTGCATCTCAAGTCCTTAGGGAATATAGAAGAGGCAAACTCATAACGGGGACATaGACCCAAAGGAAACTTCAG +
Preference number: 4 (lower is better)
Translates to: KSECLSASQVLREYRRGKLITGT*TQRKLQ
Trigger: CTGAAGTTTCCTTTGGGTCCATGTCCCCGTTATGAG...TTTGCCTCTTCTATATTCCCTAAGGACTTGAGATGCAGACAAGCATTCAGATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp CTAGAGGTTGACAGCAGGTGTCTTTCTCAGTTGTTCTCCATCTTATTTTTGAAAATATGTCTTCACTGGTaGCCGATCTCCATGTCGATA +
Preference number: 4 (lower is better)
Translates to: LEVDSRCLSQLFSILFLKICLHW*PISMSI
Trigger: TATCGACATGGAGATCGGTCACCAGTGAAGACATAT...TTTCAAAAATAAGATGGAGAACAACTGAGAAAGACACCTGCTGTCAACCTCTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp ATCATATTCTCATTTGGAGCCAAGAGGAAGATGGGTCACAGAAAGATCATGAAAAGAAGCTTAGGGAATTaGGAGGTAGTTGCCATTAGG +
Preference number: 4 (lower is better)
Translates to: IIFSFGAKRKMGHRKIMKRSLGN*EVVAIR
Trigger: CCTAATGGCAACTACCTCTCAATTCCCTAAGCTTCT...TTTCATGATCTTTCTGTGACCCATCTTCCTCTTGGCTCCAAATGAGAATATGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp TCTGAGACAGACCAGCAACAGAAGGTGTCATTCAGACTTCTTGTTTCTTCTAGGAAAGTACATCTCGACTaGGAAATTCCCATTATCTTC +
Preference number: 4 (lower is better)
Translates to: SETDQQQKVSFRLLVSSRKVHLD*EIPIIF
Trigger: GAAGATAATGGGAATTTCTCAGTCGAGATGTACTTT...CCTAGAAGAAACAAGAAGTCTGAATGACACCTTCTGTTGCTGGTCTGTCTCAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp TACATATATTGTCATATACACTCACTGTGTATGTATATAGTCCAGAAGAGGGCAGCCACAGACAGCCAATaGCACAATTACCTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: YIYCHIHSLCMYIVQKRAATDSQ*HNYLCV
Trigger: GACACAGAGGTAATTGTGGCATTGGCTGTCTGTGGC...TGCCCTCTTCTGGACTATATACATACACAGTGAGTGTATATGACAATATATGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp TACATATATTGTCATATACACTCACTGTGTATGTATATAGTCCAGAAGAGGGCAAGTGCTGAACTTCATTaGGAGGGAAGAGTCCAGCCA +
Preference number: 4 (lower is better)
Translates to: YIYCHIHSLCMYIVQKRASAELH*EGRVQP
Trigger: TGGCTGGACTCTTCCCTCCCAATGAAGTTCAGCACT...TGCCCTCTTCTGGACTATATACATACACAGTGAGTGTATATGACAATATATGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CCA 90 bp TACATATATTGTCATATACACTCACTGTGTATGTATATAGTCCAGAAGAGGGCAGGCAGAAGCAGCCCATaGGTTTGCTCACAAAAGAGT +
Preference number: 4 (lower is better)
Translates to: YIYCHIHSLCMYIVQKRAGRSSP*VCSQKS
Trigger: ACTCTTTTGTGAGCAAACCCATGGGCTGCTTCTGCC...TGCCCTCTTCTGGACTATATACATACACAGTGAGTGTATATGACAATATATGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR TCA 90 bp TTTAGAGAAAGCCAGTGTCCAACACAGTACACGGTAAACATCAGGCATGAAGATAAAGTACATCTCGACTaGGAAATTCCCATTATCTTC +
Preference number: 4 (lower is better)
Translates to: FRESQCPTQYTVNIRHEDKVHLD*EIPIIF
Trigger: GAAGATAATGGGAATTTCTCAGTCGAGATGTACTTT...ATCTTCATGCCTGATGTTTACCGTGTACTGTGTTGGACACTGGCTTTCTCTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR GCA 90 bp CAGGTGTCTTTCTCAGTTGTTCTCCATCTTATTTTTGAAACGGTTTCTCACTGTTACGATCGAAGTCTGTaGTTCGCACATAAACCTCTT +
Preference number: 4 (lower is better)
Translates to: QVSFSVVLHLIFETVSHCYDRSL*FAHKPL
Trigger: AAGAGGTTTATGTGCGAAGCACAGACTTCGATCGTA...ACAGTGAGAAACCGTTTCAAAAATAAGATGGAGAACAACTGAGAAAGACACCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS CCA 90 bp TGCTCGTGGATCCCGAAGAGGAAGAGGAAGCTGAAGTCCTTTAGCTaGCTCAGACGCTGCACGGTTTGGGGTGAGGCCCAGGGCGGCAGA +
Preference number: 5 (lower is better)
Translates to: CSWIPKRKRKLKSFS*LRRCTVWGEAQGGR
Trigger: TCTGCCGCCCTGGGCCTCACCCCAAACCGTGCAGCGTCTGAGCCAGCTAAAGGACTTCAGCTTCCTCTTCCTCTTCGGGATCCACGAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002172.14
ENSMUST00000150403.8
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS CCA 90 bp GTCCTTGGGTATGACAGGCTCTGTGAGGCGAAGGAAATCCTGCAGTaGGCAACGGTGAGGACAGCCAGGCAGGATCAGAGGCCAGGGTGC +
Preference number: 5 (lower is better)
Translates to: VLGYDRLCEAKEILQ*ATVRTARQDQRPGC
Trigger: GCACCCTGGCCTCTGATCCTGCCTGGCTGTCCTCACCGTTGCCCACTGCAGGATTTCCTTCGCCTCACAGAGCCTGTCATACCCAAGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS TCA 90 bp ATGACAGGCTCTGTGAGGCGAAGGAAATCCTGCAGTGGGCAACGGTaGGGACAGCCAGGCAGGATCAGAGGCCAGGGTGCCTTCTTACTG +
Preference number: 5 (lower is better)
Translates to: MTGSVRRRKSCSGQR*GQPGRIRGQGAFLL
Trigger: CAGTAAGAAGGCACCCTGGCCTCTGATCCTGCCTGGCTGTCCTCACCGTTGCCCACTGCAGGATTTCCTTCGCCTCACAGAGCCTGTCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS GCA 90 bp AGCGTAGACTCCGGGCCTGTATGGGTGGCATCACCGTTAGGCACATaGCAAGAAGGAACTGGAGAAGAGCCGCCTGGCTCCAACCAGTCT +
Preference number: 5 (lower is better)
Translates to: SVDSGPVWVASPLGT*QEGTGEEPPGSNQS
Trigger: AGACTGGTTGGAGCCAGGCGGCTCTTCTCCAGTTCCTTCTTGGCATGTGCCTAACGGTGATGCCACCCATACAGGCCCGGAGTCTACGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000002172.14
ENSMUST00000150403.8
ENSMUST00000155418.2
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS GCA 90 bp AGAGGGAAGGGGACTGAGTGGTTGTCAAGCATGGTCTTCCCTGTCTaGAACATGGTGGTAGCCAGGAGGCTGGGCCTGCATCCGGAAGAG +
Preference number: 5 (lower is better)
Translates to: RGKGTEWLSSMVFPV*NMVVARRLGLHPEE
Trigger: CTCTTCCGGATGCAGGCCCAGCCTCCTGGCTACCACCATGTTGCAGACAGGGAAGACCATGCTTGACAACCACTCAGTCCCCTTCCCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238832.2
CDS TCA 90 bp GGGCCTTCTGTACTTGCTCGTGGATCCCGAAGAGGAAGAGGAAGCTaGAGTCCTTTAGCTGGCTCAGACGCTGCACGGTTTGGGGTGAGG +
Preference number: 5 (lower is better)
Translates to: GPSVLARGSRRGRGS*SPLAGSDAARFGVR
Trigger: CCTCACCCCAAACCGTGCAGCGTCTGAGCCAGCTAAAGGACTTCAGCTTCCTCTTCCTCTTCGGGATCCACGAGCAAGTACAGAAGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002172.14
ENSMUST00000150403.8
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp GACCCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGAAAGCCATGGTAGCGTaGCCGCAGGGCCTGGCCCAG +
Preference number: 5 (lower is better)
Translates to: DPTDGNTFCEEWQLFVNRKAMVA*PQGLAQ
Trigger: CTGGGCCAGGCCCTGCGGCAACGCTACCATGGCTTT...CCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp GGCAGCTGTTTGTTAATAGGCCAAAAGTACCCAATTCTTAGGGTTGGAGCAGGGAAAGCCATGGTAGCGTaGCCGCAGGGCCTGGCCCAG +
Preference number: 5 (lower is better)
Translates to: GSCLLIGQKYPILRVGAGKAMVA*PQGLAQ
Trigger: CTGGGCCAGGCCCTGCGGCAACGCTACCATGGCTTT...CCCTGCTCCAACCCTAAGAATTGGGTACTTTTGGCCTATTAACAAACAGCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS CCA 90 bp TGGTGTCTGCCGAGTCTCATTCTGCAGCTGCTCATAACGGGGACATaGACCCAAAGGAAACTTCAGCAACCTGTCTTCAGTGATGGGCAC +
Preference number: 5 (lower is better)
Translates to: WCLPSLILQLLITGT*TQRKLQQPVFSDGH
Trigger: GTGCCCATCACTGAAGACAGGTTGCTGAAGTTTCCTTTGGGTCCATGTCCCCGTTATGAGCAGCTGCAGAATGAGACTCGGCAGACACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS CCA 90 bp GCTGACCAAATCCCTGGGGCCATTTCTCTTCCTGATAGGGGTCCTTaGGATATGTCTTCACTGGTGACCGATCTCCATGTCGATACAGCA +
Preference number: 5 (lower is better)
Translates to: ADQIPGAISLPDRGP*DMSSLVTDLHVDTA
Trigger: TGCTGTATCGACATGGAGATCGGTCACCAGTGAAGACATATCCCAAGGACCCCTATCAGGAAGAGAAATGGCCCCAGGGATTTGGTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000002172.14
ENSMUST00000150403.8
ENSMUST00000155418.2
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS CCA 90 bp GCCAATGCCACAATTACCTCTGTGTCTGCAGTATCATTTGCTAGCTaGCACTCCTTCTGCCAGTCCTTGGGTATGACAGGCTCTGTGAGG +
Preference number: 5 (lower is better)
Translates to: ANATITSVSAVSFAS*HSFCQSLGMTGSVR
Trigger: CCTCACAGAGCCTGTCATACCCAAGGACTGGCAGAAGGAGTGCCAGCTAGCAAATGATACTGCAGACACAGAGGTAATTGTGGCATTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp GACCCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGAAGAGTCCAGCCAGGTaGGCCTCAGCACTCATGAGA +
Preference number: 5 (lower is better)
Translates to: DPTDGNTFCEEWQLFVNRKSPAR*ASALMR
Trigger: TCTCATGAGTGCTGAGGCCAACCTGGCTGGACTCTT...CCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp GATGGAAGCTCAGGGAAGATGATGTGTCAGCTCTATGATCCAGGATACTCCGGTTCCTTCTGCCAGTCCTaGGGTATGACAGGCTCTGTG +
Preference number: 5 (lower is better)
Translates to: DGSSGKMMCQLYDPGYSGSFCQS*GMTGSV
Trigger: CACAGAGCCTGTCATACCCAAGGACTGGCAGAAGGA...ACCGGAGTATCCTGGATCATAGAGCTGACACATCATCTTCCCTGAGCTTCCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS GCA 90 bp ATTACCTCTGTGTCTGCAGTATCATTTGCTAGCTGGCACTCCTTCTaGCAGTCCTTGGGTATGACAGGCTCTGTGAGGCGAAGGAAATCC +
Preference number: 5 (lower is better)
Translates to: ITSVSAVSFASWHSF*QSLGMTGSVRRRKS
Trigger: GGATTTCCTTCGCCTCACAGAGCCTGTCATACCCAAGGACTGGCAGAAGGAGTGCCAGCTAGCAAATGATACTGCAGACACAGAGGTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp AGACAGACCAGCAACAGAAGGTGTCATTCAGACTTCTTGTTTCTTCTAGGTTATAAAGCCATGGTAGCGTaGCCGCAGGGCCTGGCCCAG +
Preference number: 5 (lower is better)
Translates to: RQTSNRRCHSDFLFLLGYKAMVA*PQGLAQ
Trigger: CTGGGCCAGGCCCTGCGGCAACGCTACCATGGCTTT...ATAACCTAGAAGAAACAAGAAGTCTGAATGACACCTTCTGTTGCTGGTCTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp AAGATAAAGAGCAAGGCTCGGTGGAAGAGCAAGGCAGATCAAGTACCAGCTTCTAAGAGTCCAGCCAGGTaGGCCTCAGCACTCATGAGA +
Preference number: 5 (lower is better)
Translates to: KIKSKARWKSKADQVPASKSPAR*ASALMR
Trigger: TCTCATGAGTGCTGAGGCCAACCTGGCTGGACTCTT...AGAAGCTGGTACTTGATCTGCCTTGCTCTTCCACCGAGCCTTGCTCTTTATCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS TCA 90 bp CCTGTCTTCAGTGATGGGCACAGTGTGAACAGGGATAGGCTGCCATaGAATGTTAGGGTTGAAGTGCTGAACTTCATTGGGAGGGAAGAG +
Preference number: 5 (lower is better)
Translates to: PVFSDGHSVNRDRLP*NVRVEVLNFIGREE
Trigger: CTCTTCCCTCCCAATGAAGTTCAGCACTTCAACCCTAACATTTCATGGCAGCCTATCCCTGTTCACACTGTGCCCATCACTGAAGACAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000002172.14
ENSMUST00000150403.8
ENSMUST00000155418.2
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp GATGGAAGCTCAGGGAAGATGATGTGTCAGCTCTATGATCCAGGATACTCCGGTGTAAGCCCTGTCTCGTaGGCCACCATGTTCAGAAAT +
Preference number: 5 (lower is better)
Translates to: DGSSGKMMCQLYDPGYSGVSPVS*ATMFRN
Trigger: ATTTCTGAACATGGTGGCCAACGAGACAGGGCTTAC...ACCGGAGTATCCTGGATCATAGAGCTGACACATCATCTTCCCTGAGCTTCCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp GACCCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGGTAAGCCCTGTCTCGTaGGCCACCATGTTCAGAAAT +
Preference number: 5 (lower is better)
Translates to: DPTDGNTFCEEWQLFVNRVSPVS*ATMFRN
Trigger: ATTTCTGAACATGGTGGCCAACGAGACAGGGCTTAC...CCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp TCCCTCCCACAACATGGACTCTGGGGATCAAACTCAGGTTATCAGGCTTGGTTGGACATTCAATGCCATTaGCAGAGCAACCAGGGTAGT +
Preference number: 5 (lower is better)
Translates to: SLPQHGLWGSNSGYQAWLDIQCH*QSNQGS
Trigger: ACTACCCTGGTTGCTCTGCAAATGGCATTGAATGTC...CAACCAAGCCTGATAACCTGAGTTTGATCCCCAGAGTCCATGTTGTGGGAGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp CTCACTGTGTATGTATATAGTCCAGAAGAGGGCACTGTATCACCTGGAAGTGGATCCTTCTGCCAGTCCTaGGGTATGACAGGCTCTGTG +
Preference number: 5 (lower is better)
Translates to: LTVYVYSPEEGTVSPGSGSFCQS*GMTGSV
Trigger: CACAGAGCCTGTCATACCCAAGGACTGGCAGAAGGA...TCCACTTCCAGGTGATACAGTGCCCTCTTCTGGACTATATACATACACAGTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp GACCCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGGGAAGCATAGGGAGCTaGCTTCCCATTGTAGACATT +
Preference number: 5 (lower is better)
Translates to: DPTDGNTFCEEWQLFVNRGSIGS*LPIVDI
Trigger: AATGTCTACAATGGGAAGCAAGCTCCCTATGCTTCC...CCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp TTGGTTTTTCCCTCCCACAACATGGACTCTGGGGATCAAACTCAGGTTATCAGGGGAAGCATAGGGAGCTaGCTTCCCATTGTAGACATT +
Preference number: 5 (lower is better)
Translates to: LVFPSHNMDSGDQTQVIRGSIGS*LPIVDI
Trigger: AATGTCTACAATGGGAAGCAAGCTCCCTATGCTTCC...CCTGATAACCTGAGTTTGATCCCCAGAGTCCATGTTGTGGGAGGGAAAAACCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp CCTGTGTGTGAGATTCTGCGATCAAACATACAGCCTTGTGTATGCTATATAGGTTCCTTCTGCCAGTCCTaGGGTATGACAGGCTCTGTG +
Preference number: 5 (lower is better)
Translates to: PVCEILRSNIQPCVCYIGSFCQS*GMTGSV
Trigger: CACAGAGCCTGTCATACCCAAGGACTGGCAGAAGGA...ACCTATATAGCATACACAAGGCTGTATGTTTGATCGCAGAATCTCACACACAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp CTATGGGAGACACACTGGCCTCTACTATGGGTGAGTAAAAGCAACTGTATCTCATGTCTGCAGTATCATTaGCTAGCTGGCACTCCTTCT +
Preference number: 5 (lower is better)
Translates to: LWETHWPLLWVSKSNCISCLQYH*LAGTPS
Trigger: AGAAGGAGTGCCAGCTAGCAAATGATACTGCAGACA...TGAGATACAGTTGCTTTTACTCACCCATAGTAGAGGCCAGTGTGTCTCCCATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS CCA 90 bp CATGTTCAGAAATTGTGCATTCTGAATACTTCTGTTCTGATACTCTaGTGTCTGCCGAGTCTCATTCTGCAGCTGCTCATAACGGGGACA +
Preference number: 5 (lower is better)
Translates to: HVQKLCILNTSVLIL*CLPSLILQLLITGT
Trigger: TGTCCCCGTTATGAGCAGCTGCAGAATGAGACTCGGCAGACACCAGAGTATCAGAACAGAAGTATTCAGAATGCACAATTTCTGAACATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp TCCCTCCCACAACATGGACTCTGGGGATCAAACTCAGGTTATCAGGCTTGGTTGCACCATGTTCAGAAATaGTGCATTCTGAATACTTCT +
Preference number: 5 (lower is better)
Translates to: SLPQHGLWGSNSGYQAWLHHVQK*CILNTS
Trigger: AGAAGTATTCAGAATGCACAATTTCTGAACATGGTG...CAACCAAGCCTGATAACCTGAGTTTGATCCCCAGAGTCCATGTTGTGGGAGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp CCTGTGTGTGAGATTCTGCGATCAAACATACAGCCTTGTGTATGCTATATAGGTGTAAGCCCTGTCTCGTaGGCCACCATGTTCAGAAAT +
Preference number: 5 (lower is better)
Translates to: PVCEILRSNIQPCVCYIGVSPVS*ATMFRN
Trigger: ATTTCTGAACATGGTGGCCAACGAGACAGGGCTTAC...ACCTATATAGCATACACAAGGCTGTATGTTTGATCGCAGAATCTCACACACAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp TATATAGTCCAGAAGAGGGCACTGTATCACCTGGAAGTGGAGTTACAGACAGTTGACATTCAATGCCATTaGCAGAGCAACCAGGGTAGT +
Preference number: 5 (lower is better)
Translates to: YIVQKRALYHLEVELQTVDIQCH*QSNQGS
Trigger: ACTACCCTGGTTGCTCTGCAAATGGCATTGAATGTC...AACTGTCTGTAACTCCACTTCCAGGTGATACAGTGCCCTCTTCTGGACTATATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp TATATAGTCCAGAAGAGGGCACTGTATCACCTGGAAGTGGAGTTACAGACAGTTGGAAGCATAGGGAGCTaGCTTCCCATTGTAGACATT +
Preference number: 5 (lower is better)
Translates to: YIVQKRALYHLEVELQTVGSIGS*LPIVDI
Trigger: AATGTCTACAATGGGAAGCAAGCTCCCTATGCTTCC...AACTGTCTGTAACTCCACTTCCAGGTGATACAGTGCCCTCTTCTGGACTATATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp TATATAGTCCAGAAGAGGGCACTGTATCACCTGGAAGTGGAGTTACAGACAGTTTGTCTGCAGTATCATTaGCTAGCTGGCACTCCTTCT +
Preference number: 5 (lower is better)
Translates to: YIVQKRALYHLEVELQTVCLQYH*LAGTPS
Trigger: AGAAGGAGTGCCAGCTAGCAAATGATACTGCAGACA...AACTGTCTGTAACTCCACTTCCAGGTGATACAGTGCCCTCTTCTGGACTATATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp TTTAGAGAAAGCCAGTGTCCAACACAGTACACGGTAAACATCAGGCATGAAGATTGTCTGCAGTATCATTaGCTAGCTGGCACTCCTTCT +
Preference number: 5 (lower is better)
Translates to: FRESQCPTQYTVNIRHEDCLQYH*LAGTPS
Trigger: AGAAGGAGTGCCAGCTAGCAAATGATACTGCAGACA...ATCTTCATGCCTGATGTTTACCGTGTACTGTGTTGGACACTGGCTTTCTCTAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp GATCAAACTCAGGTTATCAGGCTTGGTTGGGATCAGATGCCTTTATCTGCTGAGCACCATGTTCAGAAATaGTGCATTCTGAATACTTCT +
Preference number: 5 (lower is better)
Translates to: DQTQVIRLGWDQMPLSAEHHVQK*CILNTS
Trigger: AGAAGTATTCAGAATGCACAATTTCTGAACATGGTG...CTCAGCAGATAAAGGCATCTGATCCCAACCAAGCCTGATAACCTGAGTTTGATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp TCTTTCTCAGTTGTTCTCCATCTTATTTTTGAAACGGTTTCTCACTGTACCTGGGACATTCAATGCCATTaGCAGAGCAACCAGGGTAGT +
Preference number: 5 (lower is better)
Translates to: SFSVVLHLIFETVSHCTWDIQCH*QSNQGS
Trigger: ACTACCCTGGTTGCTCTGCAAATGGCATTGAATGTC...CCAGGTACAGTGAGAAACCGTTTCAAAAATAAGATGGAGAACAACTGAGAAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS-3UTR CAA 90 bp AGACAGACCAGCAACAGAAGGTGTCATTCAGACTTCTTGTTTCTTCTAGGTTATCACCATGTTCAGAAATaGTGCATTCTGAATACTTCT +
Preference number: 5 (lower is better)
Translates to: RQTSNRRCHSDFLFLLGYHHVQK*CILNTS
Trigger: AGAAGTATTCAGAATGCACAATTTCTGAACATGGTG...ATAACCTAGAAGAAACAAGAAGTCTGAATGACACCTTCTGTTGCTGGTCTGTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS TCA 72 bp TCTGTGAGGCGAAGGAAATCCTGCAGTGGGCAACGGTaGGGACAGCCAGGCAGGATCAGAGGCCAGGGTGCC +
Preference number: 6 (lower is better)
Translates to: SVRRRKSCSGQR*GQPGRIRGQGA
Trigger: GGCACCCTGGCCTCTGATCCTGCCTGGCTGTCCTCACCGTTGCCCACTGCAGGATTTCCTTCGCCTCACAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS GCA 72 bp TCCGGGCCTGTATGGGTGGCATCACCGTTAGGCACATaGCAAGAAGGAACTGGAGAAGAGCCGCCTGGCTCC +
Preference number: 6 (lower is better)
Translates to: SGPVWVASPLGT*QEGTGEEPPGS
Trigger: GGAGCCAGGCGGCTCTTCTCCAGTTCCTTCTTGGCATGTGCCTAACGGTGATGCCACCCATACAGGCCCGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000002172.14
ENSMUST00000150403.8
ENSMUST00000155418.2
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS GCA 72 bp GGGACTGAGTGGTTGTCAAGCATGGTCTTCCCTGTCTaGAACATGGTGGTAGCCAGGAGGCTGGGCCTGCAT +
Preference number: 6 (lower is better)
Translates to: GTEWLSSMVFPV*NMVVARRLGLH
Trigger: ATGCAGGCCCAGCCTCCTGGCTACCACCATGTTGCAGACAGGGAAGACCATGCTTGACAACCACTCAGTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238832.2
CDS CCA 72 bp GGTGGCATCACCGTTAGGCACATGCCAAGAAGGAACTaGAGAAGAGCCGCCTGGCTCCAACCAGTCTGTCTG +
Preference number: 6 (lower is better)
Translates to: GGITVRHMPRRN*RRAAWLQPVCL
Trigger: CAGACAGACTGGTTGGAGCCAGGCGGCTCTTCTCCAGTTCCTTCTTGGCATGTGCCTAACGGTGATGCCACC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000002172.14
ENSMUST00000150403.8
ENSMUST00000155418.2
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS CCA 72 bp ATCCCGAAGAGGAAGAGGAAGCTGAAGTCCTTTAGCTaGCTCAGACGCTGCACGGTTTGGGGTGAGGCCCAG +
Preference number: 6 (lower is better)
Translates to: IPKRKRKLKSFS*LRRCTVWGEAQ
Trigger: CTGGGCCTCACCCCAAACCGTGCAGCGTCTGAGCCAGCTAAAGGACTTCAGCTTCCTCTTCCTCTTCGGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002172.14
ENSMUST00000150403.8
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS CCA 72 bp TATGACAGGCTCTGTGAGGCGAAGGAAATCCTGCAGTaGGCAACGGTGAGGACAGCCAGGCAGGATCAGAGG +
Preference number: 6 (lower is better)
Translates to: YDRLCEAKEILQ*ATVRTARQDQR
Trigger: CCTCTGATCCTGCCTGGCTGTCCTCACCGTTGCCCACTGCAGGATTTCCTTCGCCTCACAGAGCCTGTCATA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS CAA 90 bp GTGTCTGCAGTATCATTTGCTAGCTGGCACTCCTTCTGCCAGTCCTaGGGTATGACAGGCTCTGTGAGGCGAAGGAAATCCTGCAGTGGG +
Preference number: 6 (lower is better)
Translates to: VSAVSFASWHSFCQS*GMTGSVRRRKSCSG
Trigger: CCCACTGCAGGATTTCCTTCGCCTCACAGAGCCTGTCATACCCAAGGACTGGCAGAAGGAGTGCCAGCTAGCAAATGATACTGCAGACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS TCA 72 bp GTACTTGCTCGTGGATCCCGAAGAGGAAGAGGAAGCTaGAGTCCTTTAGCTGGCTCAGACGCTGCACGGTTT +
Preference number: 6 (lower is better)
Translates to: VLARGSRRGRGS*SPLAGSDAARF
Trigger: AAACCGTGCAGCGTCTGAGCCAGCTAAAGGACTTCAGCTTCCTCTTCCTCTTCGGGATCCACGAGCAAGTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002172.14
ENSMUST00000150403.8
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS GCA 72 bp GTGTCTGCAGTATCATTTGCTAGCTGGCACTCCTTCTaGCAGTCCTTGGGTATGACAGGCTCTGTGAGGCGA +
Preference number: 6 (lower is better)
Translates to: VSAVSFASWHSF*QSLGMTGSVRR
Trigger: TCGCCTCACAGAGCCTGTCATACCCAAGGACTGGCAGAAGGAGTGCCAGCTAGCAAATGATACTGCAGACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS CCA 72 bp ATCCCTGGGGCCATTTCTCTTCCTGATAGGGGTCCTTaGGATATGTCTTCACTGGTGACCGATCTCCATGTC +
Preference number: 6 (lower is better)
Translates to: IPGAISLPDRGP*DMSSLVTDLHV
Trigger: GACATGGAGATCGGTCACCAGTGAAGACATATCCCAAGGACCCCTATCAGGAAGAGAAATGGCCCCAGGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000002172.14
ENSMUST00000150403.8
ENSMUST00000155418.2
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS CAA 72 bp GTATCATTTGCTAGCTGGCACTCCTTCTGCCAGTCCTaGGGTATGACAGGCTCTGTGAGGCGAAGGAAATCC +
Preference number: 6 (lower is better)
Translates to: VSFASWHSFCQS*GMTGSVRRRKS
Trigger: GGATTTCCTTCGCCTCACAGAGCCTGTCATACCCAAGGACTGGCAGAAGGAGTGCCAGCTAGCAAATGATAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS TCA 72 bp GGGATAGGCTGCCATGAAATGTTAGGGTTGAAGTGCTaGACTTCATTGGGAGGGAAGAGTCCAGCCAGGTTG +
Preference number: 6 (lower is better)
Translates to: GIGCHEMLGLKC*TSLGGKSPARL
Trigger: CAACCTGGCTGGACTCTTCCCTCCCAATGAAGTTCAGCACTTCAACCCTAACATTTCATGGCAGCCTATCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000002172.14
ENSMUST00000150403.8
ENSMUST00000155418.2
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS CCA 72 bp CCGAGTCTCATTCTGCAGCTGCTCATAACGGGGACATaGACCCAAAGGAAACTTCAGCAACCTGTCTTCAGT +
Preference number: 6 (lower is better)
Translates to: PSLILQLLITGT*TQRKLQQPVFS
Trigger: ACTGAAGACAGGTTGCTGAAGTTTCCTTTGGGTCCATGTCCCCGTTATGAGCAGCTGCAGAATGAGACTCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS CAA 90 bp ACATTCCAGATGGTCTCTAGGGTCACGTTTGTAAGCCCTGTCTCGTaGGCCACCATGTTCAGAAATTGCCTGTCTTCAGTGATGGGCACA +
Preference number: 6 (lower is better)
Translates to: TFQMVSRVTFVSPVS*ATMFRNCLSSVMGT
Trigger: TGTGCCCATCACTGAAGACAGGCAATTTCTGAACATGGTGGCCAACGAGACAGGGCTTACAAACGTGACCCTAGAGACCATCTGGAATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150403.8
CDS CCA 72 bp ACAATTACCTCTGTGTCTGCAGTATCATTTGCTAGCTaGCACTCCTTCTGCCAGTCCTTGGGTATGACAGGC +
Preference number: 6 (lower is better)
Translates to: TITSVSAVSFAS*HSFCQSLGMTG
Trigger: GCCTGTCATACCCAAGGACTGGCAGAAGGAGTGCCAGCTAGCAAATGATACTGCAGACACAGAGGTAATTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS CAA 72 bp CCAATGCCACAATTACCTCTGTGTCTGCAGTATCATTaGCTAGCTGGCACTCCTTCTGCCAGTCCTTGGGTA +
Preference number: 6 (lower is better)
Translates to: PMPQLPLCLQYH*LAGTPSASPWV
Trigger: TACCCAAGGACTGGCAGAAGGAGTGCCAGCTAGCAAATGATACTGCAGACACAGAGGTAATTGTGGCATTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS CAA 72 bp ATGGTCTCTAGGGTCACGTTTGTAAGCCCTGTCTCGTaGGCCACCATGTTCAGAAATTGCCTGTCTTCAGTG +
Preference number: 6 (lower is better)
Translates to: MVSRVTFVSPVS*ATMFRNCLSSV
Trigger: CACTGAAGACAGGCAATTTCTGAACATGGTGGCCAACGAGACAGGGCTTACAAACGTGACCCTAGAGACCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150403.8
CDS CAA 90 bp GGAAGCATAGGGAGCTTGCTTCCCATTGTAGACATTCAATGCCATTaGCAGAGCAACCAGGGTAGTGTCATGCGCGGAATAAACCAGAAG +
Preference number: 6 (lower is better)
Translates to: GSIGSLLPIVDIQCH*QSNQGSVMRGINQK
Trigger: CTTCTGGTTTATTCCGCGCATGACACTACCCTGGTTGCTCTGCAAATGGCATTGAATGTCTACAATGGGAAGCAAGCTCCCTATGCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002172.14
ENSMUST00000150403.8
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS TCA 72 bp AGTGATGGGCACAGTGTGAACAGGGATAGGCTGCCATaGAATGTTAGGGTTGAAGTGCTGAACTTCATTGGG +
Preference number: 6 (lower is better)
Translates to: SDGHSVNRDRLP*NVRVEVLNFIG
Trigger: CCCAATGAAGTTCAGCACTTCAACCCTAACATTTCATGGCAGCCTATCCCTGTTCACACTGTGCCCATCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000002172.14
ENSMUST00000150403.8
ENSMUST00000155418.2
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS GCA 72 bp AAGCCCTGTCTCGTTGGCCACCATGTTCAGAAATTGTaGATTCTGAATACTTCTGTTCTGATACTCTGGTGT +
Preference number: 6 (lower is better)
Translates to: KPCLVGHHVQKL*ILNTSVLILWC
Trigger: ACACCAGAGTATCAGAACAGAAGTATTCAGAATGCACAATTTCTGAACATGGTGGCCAACGAGACAGGGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2
CDS CCA 72 bp AAATTGTGCATTCTGAATACTTCTGTTCTGATACTCTaGTGTCTGCCGAGTCTCATTCTGCAGCTGCTCATA +
Preference number: 6 (lower is better)
Translates to: KLCILNTSVLIL*CLPSLILQLLI
Trigger: TATGAGCAGCTGCAGAATGAGACTCGGCAGACACCAGAGTATCAGAACAGAAGTATTCAGAATGCACAATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002172.14
ENSMUST00000238832.2
ENSMUST00000239169.2