RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ACOX1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020777

Ensembl transcript IDs: ENSMUST00000066587.12, ENSMUST00000072948.11, ENSMUST00000148601.2

Found 225 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AAGACAAGCAACTTAGCTGTGTCAGGAAGTGGGGTCATGGGCGGGTaGATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGA +
Preference number: 1 (lower is better)
Translates to: KTSNLAVSGSGVMGG*MPLPGRPEWELSPG
Trigger: TCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGCCCATGACCCCACTTCCTGACACAGCTAAGTTGCTTGTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR TCA 90 bp TTGGTGGGTGGGTGTTTAAGGACTCCTCTTGTTGATATGTTAGTGTaGCAGTTGGTAGGAATGACATACCCACACAGCAGGCAGCAGGGG +
Preference number: 1 (lower is better)
Translates to: LVGGCLRTPLVDMLV*QLVGMTYPHSRQQG
Trigger: CCCCTGCTGCCTGCTGTGTGGGTATGTCATTCCTACCAACTGTCACACTAACATATCAACAAGAGGAGTCCTTAAACACCCACCCACCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR GCA 90 bp AGCTTACCACAAAGCCAGCTACTCAGCAAGAACCTCCCCACAGCCTaGACTCATTCTTCAGCTGGCTTAGGATCCATCTTCTCAACTAAC +
Preference number: 1 (lower is better)
Translates to: SLPQSQLLSKNLPTA*THSSAGLGSIFSTN
Trigger: GTTAGTTGAGAAGATGGATCCTAAGCCAGCTGAAGAATGAGTGCAGGCTGTGGGGAGGTTCTTGCTGAGTAGCTGGCTTTGTGGTAAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR TCA 90 bp GAGCGCTGCTTTCTTGGTGGGTGGGTGTTTAAGGACTCCTCTTGTTaGTATGTTAGTGTGACAGTTGGTAGGAATGACATACCCACACAG +
Preference number: 1 (lower is better)
Translates to: ERCFLGGWVFKDSSC*YVSVTVGRNDIPTQ
Trigger: CTGTGTGGGTATGTCATTCCTACCAACTGTCACACTAACATATCAACAAGAGGAGTCCTTAAACACCCACCCACCAAGAAAGCAGCGCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR GCA 90 bp TTCCAGAATATGAATTACTGTCAAATAGAAACCCCACAGGTGACATaGTGCTTACTGTCAATCTTCAGGGATTATCAGTCATTCCAGGAG +
Preference number: 1 (lower is better)
Translates to: FQNMNYCQIETPQVT*CLLSIFRDYQSFQE
Trigger: CTCCTGGAATGACTGATAATCCCTGAAGATTGACAGTAAGCAGCATGTCACCTGTGGGGTTTCTATTTGACAGTAATTCATATTCTGGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR GCA 90 bp CAGAATATGAATTACTGTCAAATAGAAACCCCACAGGTGACATGCTaGTTACTGTCAATCTTCAGGGATTATCAGTCATTCCAGGAGAAA +
Preference number: 1 (lower is better)
Translates to: QNMNYCQIETPQVTC*LLSIFRDYQSFQEK
Trigger: TTTCTCCTGGAATGACTGATAATCCCTGAAGATTGACAGTAAGCAGCATGTCACCTGTGGGGTTTCTATTTGACAGTAATTCATATTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR CAA 90 bp AACTTAGCTGTGTCAGGAAGTGGGGTCATGGGCGGGTGCATGCCATaGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCTGCTT +
Preference number: 2 (lower is better)
Translates to: NLAVSGSGVMGGCMP*PGRPEWELSPGALL
Trigger: AAGCAGCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGCCCATGACCCCACTTCCTGACACAGCTAAGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR-3UTR TCA 90 bp AGCATCTGGGAGGCTGAGGATCAGAGGTCAAGGCCACTCTGGGCCCTGTCTCAAGTCAGCCACCATGATTaGAGTCCAGGCAACGGCCGA +
Preference number: 2 (lower is better)
Translates to: SIWEAEDQRSRPLWALSQVSHHD*SPGNGR
Trigger: TCGGCCGTTGCCTGGACTTCAATCATGGTGGCTGAC...TTGAGACAGGGCCCAGAGTGGCCTTGACCTCTGATCCTCAGCCTCCCAGATGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR-3UTR GCA 90 bp GGCTTAGGATCCATCTTCTCAACTAACACTCAGCAGATGGCTGGGGCCCAGGGCGCGGGTGCATGCCATTaGCAGGAAGACCAGAGTGGG +
Preference number: 2 (lower is better)
Translates to: GLGSIFSTNTQQMAGAQGAGACH*QEDQSG
Trigger: CCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC...GCCCTGGGCCCCAGCCATCTGCTGAGTGTTAGTTGAGAAGATGGATCCTAAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR-3UTR GCA 90 bp GGCTTAGGATCCATCTTCTCAACTAACACTCAGCAGATGGCTGGGGCCCAGGGCGGGGTCATGGGCGGGTaGATGCCATTGCCAGGAAGA +
Preference number: 2 (lower is better)
Translates to: GLGSIFSTNTQQMAGAQGGVMGG*MPLPGR
Trigger: TCTTCCTGGCAATGGCATGCACCCGCCCATGACCCC...GCCCTGGGCCCCAGCCATCTGCTGAGTGTTAGTTGAGAAGATGGATCCTAAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR-3UTR CCA 90 bp GGCTTAGGATCCATCTTCTCAACTAACACTCAGCAGATGGCTGGGGCCCAGGGCAGCTGTGTCAGGAAGTaGGGTCATGGGCGGGTGCAT +
Preference number: 2 (lower is better)
Translates to: GLGSIFSTNTQQMAGAQGSCVRK*GHGRVH
Trigger: ATGCACCCGCCCATGACCCCACTTCCTGACACAGCT...GCCCTGGGCCCCAGCCATCTGCTGAGTGTTAGTTGAGAAGATGGATCCTAAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR-3UTR CCA 90 bp GCGGGTGCATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCCTGCACCTACAACACTaGATTCTCATTTCATCTCTA +
Preference number: 2 (lower is better)
Translates to: AGACHCQEDQSGSLVPERLHLQH*ILISSL
Trigger: TAGAGATGAAATGAGAATCCAGTGTTGTAGGTGCAG...GCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR-3UTR TCA 90 bp AGCATCTGGGAGGCTGAGGATCAGAGGTCAAGGCCACTCTGGGCCCTGTCTCAACCCATACTTGATCTATaGGGAAAGACTGGTCATTGT +
Preference number: 2 (lower is better)
Translates to: SIWEAEDQRSRPLWALSQPILDL*GKTGHC
Trigger: ACAATGACCAGTCTTTCCTCATAGATCAAGTATGGG...TTGAGACAGGGCCCAGAGTGGCCTTGACCTCTGATCCTCAGCCTCCCAGATGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR-3UTR TCA 90 bp AGCATCTGGGAGGCTGAGGATCAGAGGTCAAGGCCACTCTGGGCCCTGTCTCAAAAGGACTCCTCTTGTTaGTATGTTAGTGTGACAGTT +
Preference number: 2 (lower is better)
Translates to: SIWEAEDQRSRPLWALSQKDSSC*YVSVTV
Trigger: AACTGTCACACTAACATATCAACAAGAGGAGTCCTT...TTGAGACAGGGCCCAGAGTGGCCTTGACCTCTGATCCTCAGCCTCCCAGATGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR-3UTR CCA 90 bp GGCTTAGGATCCATCTTCTCAACTAACACTCAGCAGATGGCTGGGGCCCAGGGCCCACACACTCACATCTaGGTTTCTATTAGTTTCTGG +
Preference number: 2 (lower is better)
Translates to: GLGSIFSTNTQQMAGAQGPHTHI*VSISFW
Trigger: CCAGAAACTAATAGAAACCCAGATGTGAGTGTGTGG...GCCCTGGGCCCCAGCCATCTGCTGAGTGTTAGTTGAGAAGATGGATCCTAAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR-3UTR TCA 90 bp GGCTTAGGATCCATCTTCTCAACTAACACTCAGCAGATGGCTGGGGCCCAGGGCATAGCTACACAAGTCTaGAGACGATTTCACAAGGAT +
Preference number: 2 (lower is better)
Translates to: GLGSIFSTNTQQMAGAQGIATQV*RRFHKD
Trigger: ATCCTTGTGAAATCGTCTTCAGACTTGTGTAGCTAT...GCCCTGGGCCCCAGCCATCTGCTGAGTGTTAGTTGAGAAGATGGATCCTAAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR-3UTR CCA 90 bp TCAGGGATTATCAGTCATTCCAGGAGAAAGGTTAAGACTGTGTCAGCAAATCTGCACTCAGCAGATGGCTaGGGCCCAGGGCTTTCCTGT +
Preference number: 2 (lower is better)
Translates to: SGIISHSRRKVKTVSANLHSADG*GPGLSC
Trigger: ACAGGAAAGCCCTGGGCCCCAGCCATCTGCTGAGTG...CAGATTTGCTGACACAGTCTTAACCTTTCTCCTGGAATGACTGATAATCCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR-3UTR GCA 90 bp TCAGGGATTATCAGTCATTCCAGGAGAAAGGTTAAGACTGTGTCAGCAAATCTGTCATGGGCGGGTGCATaGCATTGCCAGGAAGACCAG +
Preference number: 2 (lower is better)
Translates to: SGIISHSRRKVKTVSANLSWAGA*HCQEDQ
Trigger: CTGGTCTTCCTGGCAATGGCATGCACCCGCCCATGA...CAGATTTGCTGACACAGTCTTAACCTTTCTCCTGGAATGACTGATAATCCCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR-3UTR CCA 90 bp AGCATCTGGGAGGCTGAGGATCAGAGGTCAAGGCCACTCTGGGCCCTGTCTCAATCTATGAGGAAAGACTaGTCATTGTCTCTATTATCT +
Preference number: 2 (lower is better)
Translates to: SIWEAEDQRSRPLWALSQSMRKD*SLSLLS
Trigger: AGATAATAGAGACAATGACCAGTCTTTCCTCATAGA...TTGAGACAGGGCCCAGAGTGGCCTTGACCTCTGATCCTCAGCCTCCCAGATGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR-3UTR CCA 90 bp TCAGGGATTATCAGTCATTCCAGGAGAAAGGTTAAGACTGTGTCAGCAAATCTGCTAACACTCAGCAGATaGCTGGGGCCCAGGGCTTTC +
Preference number: 2 (lower is better)
Translates to: SGIISHSRRKVKTVSANLLTLSR*LGPRAF
Trigger: GAAAGCCCTGGGCCCCAGCCATCTGCTGAGTGTTAG...CAGATTTGCTGACACAGTCTTAACCTTTCTCCTGGAATGACTGATAATCCCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR-3UTR TCA 90 bp ACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGGGTTTCTAATAGCTACACAAGTCTaGAGACGATTTCACAAGGAT +
Preference number: 2 (lower is better)
Translates to: TAGSRGICKGHTLTSGFLIATQV*RRFHKD
Trigger: ATCCTTGTGAAATCGTCTTCAGACTTGTGTAGCTAT...TAGAAACCCAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR-3UTR CCA 90 bp ACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGGGTTTCTACTGCACCTACAACACTaGATTCTCATTTCATCTCTA +
Preference number: 2 (lower is better)
Translates to: TAGSRGICKGHTLTSGFLLHLQH*ILISSL
Trigger: TAGAGATGAAATGAGAATCCAGTGTTGTAGGTGCAG...TAGAAACCCAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR CAA 90 bp GCTCATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTaGCTCTATAGCTACACAAGTCTGAAGACGATTTCACAAGGATTA +
Preference number: 2 (lower is better)
Translates to: AHFSLLIERERPAHH*LYSYTSLKTISQGL
Trigger: TAATCCTTGTGAAATCGTCTTCAGACTTGTGTAGCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATGAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR CAA 90 bp TACTTGATCTATGAGGAAAGACTGGTCATTGTCTCTATTATCTCTTaGAGGAGAAGCAAAGCAAGAAAGGGAAGGTCAGCCACCATGATT +
Preference number: 2 (lower is better)
Translates to: YLIYEERLVIVSIIS*RRSKARKGRSATMI
Trigger: AATCATGGTGGCTGACCTTCCCTTTCTTGCTTTGCTTCTCCTCAAAGAGATAATAGAGACAATGACCAGTCTTTCCTCATAGATCAAGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR GCA 72 bp TGTCAGGAAGTGGGGTCATGGGCGGGTGCATGCCATTaGCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAG +
Preference number: 3 (lower is better)
Translates to: CQEVGSWAGACH*QEDQSGSLVPE
Trigger: CTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGCCCATGACCCCACTTCCTGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR-3UTR CAA 90 bp GGCTTAGGATCCATCTTCTCAACTAACACTCAGCAGATGGCTGGGGCCCAGGGCGGCGGGTGCATGCCATaGCCAGGAAGACCAGAGTGG +
Preference number: 3 (lower is better)
Translates to: GLGSIFSTNTQQMAGAQGGGCMP*PGRPEW
Trigger: CCACTCTGGTCTTCCTGGCAATGGCATGCACCCGCC...GCCCTGGGCCCCAGCCATCTGCTGAGTGTTAGTTGAGAAGATGGATCCTAAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR GCA 72 bp AACTTAGCTGTGTCAGGAAGTGGGGTCATGGGCGGGTaGATGCCATTGCCAGGAAGACCAGAGTGGGAGCTT +
Preference number: 3 (lower is better)
Translates to: NLAVSGSGVMGG*MPLPGRPEWEL
Trigger: AAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGCCCATGACCCCACTTCCTGACACAGCTAAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR-3UTR CAA 90 bp GGCTTAGGATCCATCTTCTCAACTAACACTCAGCAGATGGCTGGGGCCCAGGGCGTCTCTATTATCTCTTaGAGGAGAAGCAAAGCAAGA +
Preference number: 3 (lower is better)
Translates to: GLGSIFSTNTQQMAGAQGVSIIS*RRSKAR
Trigger: TCTTGCTTTGCTTCTCCTCAAAGAGATAATAGAGAC...GCCCTGGGCCCCAGCCATCTGCTGAGTGTTAGTTGAGAAGATGGATCCTAAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR CCA 72 bp CTACGTCGGCCTGGGCTACTACTGCACCTACAACACTaGATTCTCATTTCATCTCTAAGTCTGCTCATTTCT +
Preference number: 3 (lower is better)
Translates to: LRRPGLLLHLQH*ILISSLSLLIS
Trigger: AGAAATGAGCAGACTTAGAGATGAAATGAGAATCCAGTGTTGTAGGTGCAGTAGTAGCCCAGGCCGACGTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR TCA 72 bp TTCCACTCCATTAATACTGTGTTCTCAGAACTGCTCTaGAAGAACTGTTCTCACGATGCCAATGCCACAGAC +
Preference number: 3 (lower is better)
Translates to: FHSINTVFSELL*KNCSHDANATD
Trigger: GTCTGTGGCATTGGCATCGTGAGAACAGTTCTTTCAGAGCAGTTCTGAGAACACAGTATTAATGGAGTGGAA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR TCA 72 bp ATGAGGAAAGACTGGTCATTGTCTCTATTATCTCTTTaGGGAGAAGCAAAGCAAGAAAGGGAAGGTCAGCCA +
Preference number: 3 (lower is better)
Translates to: MRKDWSLSLLSL*GEAKQEREGQP
Trigger: TGGCTGACCTTCCCTTTCTTGCTTTGCTTCTCCTCAAAGAGATAATAGAGACAATGACCAGTCTTTCCTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR TCA 72 bp TTTCTTGGTGGGTGGGTGTTTAAGGACTCCTCTTGTTaGTATGTTAGTGTGACAGTTGGTAGGAATGACATA +
Preference number: 3 (lower is better)
Translates to: FLGGWVFKDSSC*YVSVTVGRNDI
Trigger: TATGTCATTCCTACCAACTGTCACACTAACATATCAACAAGAGGAGTCCTTAAACACCCACCCACCAAGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR GCA 72 bp AATTACTGTCAAATAGAAACCCCACAGGTGACATGCTaGTTACTGTCAATCTTCAGGGATTATCAGTCATTC +
Preference number: 3 (lower is better)
Translates to: NYCQIETPQVTC*LLSIFRDYQSF
Trigger: GAATGACTGATAATCCCTGAAGATTGACAGTAAGCAGCATGTCACCTGTGGGGTTTCTATTTGACAGTAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR GCA 72 bp ATGAATTACTGTCAAATAGAAACCCCACAGGTGACATaGTGCTTACTGTCAATCTTCAGGGATTATCAGTCA +
Preference number: 3 (lower is better)
Translates to: MNYCQIETPQVT*CLLSIFRDYQS
Trigger: TGACTGATAATCCCTGAAGATTGACAGTAAGCAGCATGTCACCTGTGGGGTTTCTATTTGACAGTAATTCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR TCA 72 bp GTTAAGACTGTGTCAGCAAATCTGATGGCTTTGACTTaGTGTCATTTCCACTCCATTAATACTGTGTTCTCA +
Preference number: 3 (lower is better)
Translates to: VKTVSANLMALT*CHFHSINTVFS
Trigger: TGAGAACACAGTATTAATGGAGTGGAAATGACATCAAGTCAAAGCCATCAGATTTGCTGACACAGTCTTAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp GCGGGTGCATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCTGGGGCGAGTCACTGTaGGCAGCTCCAGGATCCGAC +
Preference number: 4 (lower is better)
Translates to: AGACHCQEDQSGSLVPERWGESL*AAPGSD
Trigger: GTCGGATCCTGGAGCTGCTCACAGTGACTCGCCCCA...GCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp AGCATCTGGGAGGCTGAGGATCAGAGGTCAAGGCCACTCTGGGCCCTGTCTCAATGGGGCGAGTCACTGTaGGCAGCTCCAGGATCCGAC +
Preference number: 4 (lower is better)
Translates to: SIWEAEDQRSRPLWALSQWGESL*AAPGSD
Trigger: GTCGGATCCTGGAGCTGCTCACAGTGACTCGCCCCA...TTGAGACAGGGCCCAGAGTGGCCTTGACCTCTGATCCTCAGCCTCCCAGATGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
3UTR CAA 72 bp GTGTCAGGAAGTGGGGTCATGGGCGGGTGCATGCCATaGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGA +
Preference number: 4 (lower is better)
Translates to: VSGSGVMGGCMP*PGRPEWELSPG
Trigger: TCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGCCCATGACCCCACTTCCTGACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp AGCATCTGGGAGGCTGAGGATCAGAGGTCAAGGCCACTCTGGGCCCTGTCTCAATCTTCGGTGGCCTGGTaGAGCAAGGTGGGCAGGAAC +
Preference number: 4 (lower is better)
Translates to: SIWEAEDQRSRPLWALSQSSVAW*SKVGRN
Trigger: GTTCCTGCCCACCTTGCTTCACCAGGCCACCGAAGA...TTGAGACAGGGCCCAGAGTGGCCTTGACCTCTGATCCTCAGCCTCCCAGATGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp GCGGGTGCATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCCCGACTGTTTACCTGTaGCATCTGAGCCCCTGTGAT +
Preference number: 4 (lower is better)
Translates to: AGACHCQEDQSGSLVPERPTVYL*HLSPCD
Trigger: ATCACAGGGGCTCAGATGTCACAGGTAAACAGTCGG...GCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp AGCATCTGGGAGGCTGAGGATCAGAGGTCAAGGCCACTCTGGGCCCTGTCTCAACCTGCTGCTCTTCGGTaGCCTGGTGAAGCAAGGTGG +
Preference number: 4 (lower is better)
Translates to: SIWEAEDQRSRPLWALSQPAALR*PGEARW
Trigger: CCACCTTGCTTCACCAGGCCACCGAAGAGCAGCAGG...TTGAGACAGGGCCCAGAGTGGCCTTGACCTCTGATCCTCAGCCTCCCAGATGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp GCGGGTGCATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCCAATGGTGCATGCCTTaGACAGACTCTGAGCTGCAC +
Preference number: 4 (lower is better)
Translates to: AGACHCQEDQSGSLVPERQWCMP*TDSELH
Trigger: GTGCAGCTCAGAGTCTGTCCAAGGCATGCACCATTG...GCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp GGCTTAGGATCCATCTTCTCAACTAACACTCAGCAGATGGCTGGGGCCCAGGGCTCTTCGGTGGCCTGGTaGAGCAAGGTGGGCAGGAAC +
Preference number: 4 (lower is better)
Translates to: GLGSIFSTNTQQMAGAQGSSVAW*SKVGRN
Trigger: GTTCCTGCCCACCTTGCTTCACCAGGCCACCGAAGA...GCCCTGGGCCCCAGCCATCTGCTGAGTGTTAGTTGAGAAGATGGATCCTAAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp ATACCCACACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGTGGGGCGAGTCACTGTaGGCAGCTCCAGGATCCGAC +
Preference number: 4 (lower is better)
Translates to: IPTQQAAGAYVRATHSHLWGESL*AAPGSD
Trigger: GTCGGATCCTGGAGCTGCTCACAGTGACTCGCCCCA...CAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGTGTGGGTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp GCGGGTGCATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCAATGGCAATGGTGCATaGCTTGGACAGACTCTGAGC +
Preference number: 4 (lower is better)
Translates to: AGACHCQEDQSGSLVPERNGNGA*LGQTLS
Trigger: GCTCAGAGTCTGTCCAAGGCATGCACCATTGCCATT...GCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp ACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGGGTTTCTAGGCCAGACTGCCACCTaGTGCGGCTGGATACGCTGG +
Preference number: 4 (lower is better)
Translates to: TAGSRGICKGHTLTSGFLGQTAT*CGWIRW
Trigger: CCAGCGTATCCAGCCGCAGCAGGTGGCAGTCTGGCC...TAGAAACCCAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp GGCTTAGGATCCATCTTCTCAACTAACACTCAGCAGATGGCTGGGGCCCAGGGCCAGAGTTGGCCAGACTaGCACCTGCTGCGGCTGGAT +
Preference number: 4 (lower is better)
Translates to: GLGSIFSTNTQQMAGAQGQSWPD*HLLRLD
Trigger: ATCCAGCCGCAGCAGGTGGCAGTCTGGCCAACTCTG...GCCCTGGGCCCCAGCCATCTGCTGAGTGTTAGTTGAGAAGATGGATCCTAAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp GCGGGTGCATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCTCTTGGGGTCATATGTaGCAGTGGTTTCCAAGCCTC +
Preference number: 4 (lower is better)
Translates to: AGACHCQEDQSGSLVPERSWGHM*QWFPSL
Trigger: GAGGCTTGGAAACCACTGCCACATATGACCCCAAGA...GCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp ATACCCACACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGCCTTCAGCCCAGCTGTaGGGGCATGAAGCTCAGGCA +
Preference number: 4 (lower is better)
Translates to: IPTQQAAGAYVRATHSHLPSAQL*GHEAQA
Trigger: TGCCTGAGCTTCATGCCCTCACAGCTGGGCTGAAGG...CAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGTGTGGGTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp GCGGGTGCATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCTGCACGGCTCTGTCTTaGATCTTGGGGAGTTTATCT +
Preference number: 4 (lower is better)
Translates to: AGACHCQEDQSGSLVPERCTALS*ILGSLS
Trigger: AGATAAACTCCCCAAGATTCAAGACAGAGCCGTGCA...GCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp GCGGGTGCATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCATCGAATGGCAATGGTaGATGCCTTGGACAGACTCT +
Preference number: 4 (lower is better)
Translates to: AGACHCQEDQSGSLVPERIEWQW*MPWTDS
Trigger: AGAGTCTGTCCAAGGCATGCACCATTGCCATTCGAT...GCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp GCGGGTGCATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCTATTTGGAATCCCACTaGTGTGAGAATAGCCGTGCC +
Preference number: 4 (lower is better)
Translates to: AGACHCQEDQSGSLVPERYLESH*CENSRA
Trigger: GGCACGGCTATTCTCACAGCAGTGGGATTCCAAATA...GCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp AGGTCCTACGTCGGCCTGGGCTACTACTGCACCTACAACACTGGATTCTCATTTGGCCAGACTGCCACCTaGTGCGGCTGGATACGCTGG +
Preference number: 4 (lower is better)
Translates to: RSYVGLGYYCTYNTGFSFGQTAT*CGWIRW
Trigger: CCAGCGTATCCAGCCGCAGCAGGTGGCAGTCTGGCC...AAATGAGAATCCAGTGTTGTAGGTGCAGTAGTAGCCCAGGCCGACGTAGGACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp GCGGGTGCATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCCTTCATAACCAAACTTaGGGCCGATATCCCCAACAG +
Preference number: 4 (lower is better)
Translates to: AGACHCQEDQSGSLVPERLHNQT*GRYPQQ
Trigger: CTGTTGGGGATATCGGCCCCAAGTTTGGTTATGAAG...GCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp ATACCCACACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGGGAAGGCATAGGCGGTaGCCAGGAGCGGGAAGAGTT +
Preference number: 4 (lower is better)
Translates to: IPTQQAAGAYVRATHSHLGRHRR*PGAGRV
Trigger: AACTCTTCCCGCTCCTGGCCACCGCCTATGCCTTCC...CAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGTGTGGGTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp AGCATCTGGGAGGCTGAGGATCAGAGGTCAAGGCCACTCTGGGCCCTGTCTCAAAGGAACATGCCCAAGTaGAGGTCCAAAGGCTCAGGA +
Preference number: 4 (lower is better)
Translates to: SIWEAEDQRSRPLWALSQRNMPK*RSKGSG
Trigger: TCCTGAGCCTTTGGACCTTCACTTGGGCATGTTCCT...TTGAGACAGGGCCCAGAGTGGCCTTGACCTCTGATCCTCAGCCTCCCAGATGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp GCGGGTGCATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCTTATACTGCTGCGTCTaGAAATCCAAAATCTGGGGC +
Preference number: 4 (lower is better)
Translates to: AGACHCQEDQSGSLVPERLYCCV*KSKIWG
Trigger: GCCCCAGATTTTGGATTTTCAGACGCAGCAGTATAA...GCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp AGCATCTGGGAGGCTGAGGATCAGAGGTCAAGGCCACTCTGGGCCCTGTCTCAAGGACTATCGCATGATTaGAAGTCTTCCCAAGCCCCC +
Preference number: 4 (lower is better)
Translates to: SIWEAEDQRSRPLWALSQGLSHD*KSSQAP
Trigger: GGGGGCTTGGGAAGACTTCCAATCATGCGATAGTCC...TTGAGACAGGGCCCAGAGTGGCCTTGACCTCTGATCCTCAGCCTCCCAGATGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp ACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGGGTTTCTAGATTCCAGGCCGGCATaGAGAAACGCTCCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: TAGSRGICKGHTLTSGFLDSRPA*RNAPAA
Trigger: AGCAGCAGGAGCGTTTCTTCATGCCGGCCTGGAATC...TAGAAACCCAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp AGGTCCTACGTCGGCCTGGGCTACTACTGCACCTACAACACTGGATTCTCATTTCCTTCAGCCCAGCTGTaGGGGCATGAAGCTCAGGCA +
Preference number: 4 (lower is better)
Translates to: RSYVGLGYYCTYNTGFSFPSAQL*GHEAQA
Trigger: TGCCTGAGCTTCATGCCCTCACAGCTGGGCTGAAGG...AAATGAGAATCCAGTGTTGTAGGTGCAGTAGTAGCCCAGGCCGACGTAGGACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp GCGGGTGCATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCCTACCATCCAAGATGTaGGTGATTAACTCTGGATTG +
Preference number: 4 (lower is better)
Translates to: AGACHCQEDQSGSLVPERLPSKM*VINSGL
Trigger: CAATCCAGAGTTAATCACGCACATCTTGGATGGTAG...GCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
CDS-3UTR GCA 90 bp AGCATCTGGGAGGCTGAGGATCAGAGGTCAAGGCCACTCTGGGCCCTGTCTCAACCGTCTGGGCGTAGGTaGCAATTATCTGGAGTTCTT +
Preference number: 4 (lower is better)
Translates to: SIWEAEDQRSRPLWALSQPSGRR*QLSGVL
Trigger: AAGAACTCCAGATAATTGGCACCTACGCCCAGACGG...TTGAGACAGGGCCCAGAGTGGCCTTGACCTCTGATCCTCAGCCTCCCAGATGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp GGCTTAGGATCCATCTTCTCAACTAACACTCAGCAGATGGCTGGGGCCCAGGGCGGACTATCGCATGATTaGAAGTCTTCCCAAGCCCCC +
Preference number: 4 (lower is better)
Translates to: GLGSIFSTNTQQMAGAQGGLSHD*KSSQAP
Trigger: GGGGGCTTGGGAAGACTTCCAATCATGCGATAGTCC...GCCCTGGGCCCCAGCCATCTGCTGAGTGTTAGTTGAGAAGATGGATCCTAAGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp AGGTCCTACGTCGGCCTGGGCTACTACTGCACCTACAACACTGGATTCTCATTTCCCAACAGTGATGCCTaGCAGAGGCTTGTGGGTCCC +
Preference number: 4 (lower is better)
Translates to: RSYVGLGYYCTYNTGFSFPNSDA*QRLVGP
Trigger: GGGACCCACAAGCCTCTGCCAGGCATCACTGTTGGG...AAATGAGAATCCAGTGTTGTAGGTGCAGTAGTAGCCCAGGCCGACGTAGGACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp ATACCCACACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGAATGTCCACCAGAGTTaGCCAGACTGCCACCTGCTG +
Preference number: 4 (lower is better)
Translates to: IPTQQAAGAYVRATHSHLNVHQS*PDCHLL
Trigger: CAGCAGGTGGCAGTCTGGCCAACTCTGGTGGACATT...CAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGTGTGGGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp AGCATCTGGGAGGCTGAGGATCAGAGGTCAAGGCCACTCTGGGCCCTGTCTCAATCAGGATGCCCTCGGTaGACAGAGTTTTTAAACCAC +
Preference number: 4 (lower is better)
Translates to: SIWEAEDQRSRPLWALSQSGCPR*TEFLNH
Trigger: GTGGTTTAAAAACTCTGTGCACCGAGGGCATCCTGA...TTGAGACAGGGCCCAGAGTGGCCTTGACCTCTGATCCTCAGCCTCCCAGATGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066587.12
CDS-3UTR CCA 90 bp GCGGGTGCATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCCTCATGTTGGAAGTCTaGATCGTTCAGAATCAAGTT +
Preference number: 4 (lower is better)
Translates to: AGACHCQEDQSGSLVPERLMLEV*IVQNQV
Trigger: AACTTGATTCTGAACGATCCAGACTTCCAACATGAG...GCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
CDS-3UTR CCA 90 bp ATACCCACACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGGGACTATCGCATGATTaGAAGTCTTCCCAAGCCCCC +
Preference number: 4 (lower is better)
Translates to: IPTQQAAGAYVRATHSHLGLSHD*KSSQAP
Trigger: GGGGGCTTGGGAAGACTTCCAATCATGCGATAGTCC...CAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGTGTGGGTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp AGCATCTGGGAGGCTGAGGATCAGAGGTCAAGGCCACTCTGGGCCCTGTCTCAACTTCATAACCAAACTTaGGGCCGATATCCCCAACAG +
Preference number: 4 (lower is better)
Translates to: SIWEAEDQRSRPLWALSQLHNQT*GRYPQQ
Trigger: CTGTTGGGGATATCGGCCCCAAGTTTGGTTATGAAG...TTGAGACAGGGCCCAGAGTGGCCTTGACCTCTGATCCTCAGCCTCCCAGATGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp AGCATCTGGGAGGCTGAGGATCAGAGGTCAAGGCCACTCTGGGCCCTGTCTCAACCGTCAGGCTTCACCTaGGCATATTTCATCAACATG +
Preference number: 4 (lower is better)
Translates to: SIWEAEDQRSRPLWALSQPSGFT*AYFINM
Trigger: CATGTTGATGAAATATGCCCAGGTGAAGCCTGACGG...TTGAGACAGGGCCCAGAGTGGCCTTGACCTCTGATCCTCAGCCTCCCAGATGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp CTCTTAGTGGTAGATCAGAAAGTGCTAGGCAAGAAAGCCTGGAAAGTCCAGCTCGCCTTGGACAGACTCTaGGCTGCACTTCCCACGAGG +
Preference number: 4 (lower is better)
Translates to: LLVVDQKVLGKKAWKVQLALDRL*AALPTR
Trigger: CCTCGTGGGAAGTGCAGCTCAGAGTCTGTCCAAGGC...GAGCTGGACTTTCCAGGCTTTCTTGCCTAGCACTTTCTGATCTACCACTAAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp CTCTTAGTGGTAGATCAGAAAGTGCTAGGCAAGAAAGCCTGGAAAGTCCAGCTCCCTTCAGCCCAGCTGTaGGGGCATGAAGCTCAGGCA +
Preference number: 4 (lower is better)
Translates to: LLVVDQKVLGKKAWKVQLPSAQL*GHEAQA
Trigger: TGCCTGAGCTTCATGCCCTCACAGCTGGGCTGAAGG...GAGCTGGACTTTCCAGGCTTTCTTGCCTAGCACTTTCTGATCTACCACTAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp GGCTTAGGATCCATCTTCTCAACTAACACTCAGCAGATGGCTGGGGCCCAGGGCTGCACGGCTCTGTCTTaGATCTTGGGGAGTTTATCT +
Preference number: 4 (lower is better)
Translates to: GLGSIFSTNTQQMAGAQGCTALS*ILGSLS
Trigger: AGATAAACTCCCCAAGATTCAAGACAGAGCCGTGCA...GCCCTGGGCCCCAGCCATCTGCTGAGTGTTAGTTGAGAAGATGGATCCTAAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp ATACCCACACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGAATGGCAATGGTGCATaGCTTGGACAGACTCTGAGC +
Preference number: 4 (lower is better)
Translates to: IPTQQAAGAYVRATHSHLNGNGA*LGQTLS
Trigger: GCTCAGAGTCTGTCCAAGGCATGCACCATTGCCATT...CAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGTGTGGGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp AGCATCTGGGAGGCTGAGGATCAGAGGTCAAGGCCACTCTGGGCCCTGTCTCAACTTGGGGAGTTTATCTaGAAAGACCTTAACGGTCAC +
Preference number: 4 (lower is better)
Translates to: SIWEAEDQRSRPLWALSQLGEFI*KDLNGH
Trigger: GTGACCGTTAAGGTCTTTGCAGATAAACTCCCCAAG...TTGAGACAGGGCCCAGAGTGGCCTTGACCTCTGATCCTCAGCCTCCCAGATGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp GGCTTAGGATCCATCTTCTCAACTAACACTCAGCAGATGGCTGGGGCCCAGGGCTCACTCAGGTCGCCTTaGCCAATGCTCTCATTAATC +
Preference number: 4 (lower is better)
Translates to: GLGSIFSTNTQQMAGAQGSLRSP*PMLSLI
Trigger: GATTAATGAGAGCATTGGCCAAGGCGACCTGAGTGA...GCCCTGGGCCCCAGCCATCTGCTGAGTGTTAGTTGAGAAGATGGATCCTAAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp ATACCCACACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGATCGAATGGCAATGGTaGATGCCTTGGACAGACTCT +
Preference number: 4 (lower is better)
Translates to: IPTQQAAGAYVRATHSHLIEWQW*MPWTDS
Trigger: AGAGTCTGTCCAAGGCATGCACCATTGCCATTCGAT...CAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGTGTGGGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp GGCTTAGGATCCATCTTCTCAACTAACACTCAGCAGATGGCTGGGGCCCAGGGCGATGGAAGTCACAGTTaGGCTGTTGAGAATGAACTC +
Preference number: 4 (lower is better)
Translates to: GLGSIFSTNTQQMAGAQGDGSHS*AVENEL
Trigger: GAGTTCATTCTCAACAGCCCAACTGTGACTTCCATC...GCCCTGGGCCCCAGCCATCTGCTGAGTGTTAGTTGAGAAGATGGATCCTAAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp AGCATCTGGGAGGCTGAGGATCAGAGGTCAAGGCCACTCTGGGCCCTGTCTCAAACCTTACGAAAACCATaGTCCCATATGTCAGCTTGT +
Preference number: 4 (lower is better)
Translates to: SIWEAEDQRSRPLWALSQTLRKP*SHMSAC
Trigger: ACAAGCTGACATATGGGACCATGGTTTTCGTAAGGT...TTGAGACAGGGCCCAGAGTGGCCTTGACCTCTGATCCTCAGCCTCCCAGATGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp AGGTCCTACGTCGGCCTGGGCTACTACTGCACCTACAACACTGGATTCTCATTTCAATGGTGCATGCCTTaGACAGACTCTGAGCTGCAC +
Preference number: 4 (lower is better)
Translates to: RSYVGLGYYCTYNTGFSFQWCMP*TDSELH
Trigger: GTGCAGCTCAGAGTCTGTCCAAGGCATGCACCATTG...AAATGAGAATCCAGTGTTGTAGGTGCAGTAGTAGCCCAGGCCGACGTAGGACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp AGCATCTGGGAGGCTGAGGATCAGAGGTCAAGGCCACTCTGGGCCCTGTCTCAACGTGACGTAAATATTTaGAATCCCACTGCTGTGAGA +
Preference number: 4 (lower is better)
Translates to: SIWEAEDQRSRPLWALSQRDVNI*NPTAVR
Trigger: TCTCACAGCAGTGGGATTCCAAATATTTACGTCACG...TTGAGACAGGGCCCAGAGTGGCCTTGACCTCTGATCCTCAGCCTCCCAGATGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp GGCTTAGGATCCATCTTCTCAACTAACACTCAGCAGATGGCTGGGGCCCAGGGCCAATTTCTACCAATCTaGCTGCACGTAGCTTGTAGG +
Preference number: 4 (lower is better)
Translates to: GLGSIFSTNTQQMAGAQGQFLPI*LHVACR
Trigger: CCTACAAGCTACGTGCAGCCAGATTGGTAGAAATTG...GCCCTGGGCCCCAGCCATCTGCTGAGTGTTAGTTGAGAAGATGGATCCTAAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp GGCTTAGGATCCATCTTCTCAACTAACACTCAGCAGATGGCTGGGGCCCAGGGCTCAGTGGGGACTTCTTaGCCCACTCAAACAAGTTTT +
Preference number: 4 (lower is better)
Translates to: GLGSIFSTNTQQMAGAQGSVGTS*PTQTSF
Trigger: AAAACTTGTTTGAGTGGGCCAAGAAGTCCCCACTGA...GCCCTGGGCCCCAGCCATCTGCTGAGTGTTAGTTGAGAAGATGGATCCTAAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp ATACCCACACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGTTATACTGCTGCGTCTaGAAATCCAAAATCTGGGGC +
Preference number: 4 (lower is better)
Translates to: IPTQQAAGAYVRATHSHLLYCCV*KSKIWG
Trigger: GCCCCAGATTTTGGATTTTCAGACGCAGCAGTATAA...CAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGTGTGGGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp ACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGGGTTTCTATGCACGGCTCTGTCTTaGATCTTGGGGAGTTTATCT +
Preference number: 4 (lower is better)
Translates to: TAGSRGICKGHTLTSGFLCTALS*ILGSLS
Trigger: AGATAAACTCCCCAAGATTCAAGACAGAGCCGTGCA...TAGAAACCCAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp ACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGGGTTTCTATTTACCTGTGACATCTaGGCCCCTGTGATGATGTTC +
Preference number: 4 (lower is better)
Translates to: TAGSRGICKGHTLTSGFLFTCDI*APVMMF
Trigger: GAACATCATCACAGGGGCTCAGATGTCACAGGTAAA...TAGAAACCCAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp ACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGGGTTTCTACTTCAGGGTCTGCGATaGCAAATTCCCTCATCTTCT +
Preference number: 4 (lower is better)
Translates to: TAGSRGICKGHTLTSGFLLQGLR*QIPSSS
Trigger: AGAAGATGAGGGAATTTGGCATCGCAGACCCTGAAG...TAGAAACCCAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
CDS-3UTR CCA 90 bp GGCTTAGGATCCATCTTCTCAACTAACACTCAGCAGATGGCTGGGGCCCAGGGCACCTTACGAAAACCATaGTCCCATATGTCAGCTTGT +
Preference number: 4 (lower is better)
Translates to: GLGSIFSTNTQQMAGAQGTLRKP*SHMSAC
Trigger: ACAAGCTGACATATGGGACCATGGTTTTCGTAAGGT...GCCCTGGGCCCCAGCCATCTGCTGAGTGTTAGTTGAGAAGATGGATCCTAAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp CTCTTAGTGGTAGATCAGAAAGTGCTAGGCAAGAAAGCCTGGAAAGTCCAGCTCAATGTCCACCAGAGTTaGCCAGACTGCCACCTGCTG +
Preference number: 4 (lower is better)
Translates to: LLVVDQKVLGKKAWKVQLNVHQS*PDCHLL
Trigger: CAGCAGGTGGCAGTCTGGCCAACTCTGGTGGACATT...GAGCTGGACTTTCCAGGCTTTCTTGCCTAGCACTTTCTGATCTACCACTAAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp CTCTTAGTGGTAGATCAGAAAGTGCTAGGCAAGAAAGCCTGGAAAGTCCAGCTCAGGAACATGCCCAAGTaGAGGTCCAAAGGCTCAGGA +
Preference number: 4 (lower is better)
Translates to: LLVVDQKVLGKKAWKVQLRNMPK*RSKGSG
Trigger: TCCTGAGCCTTTGGACCTTCACTTGGGCATGTTCCT...GAGCTGGACTTTCCAGGCTTTCTTGCCTAGCACTTTCTGATCTACCACTAAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp ACAAGTCTGAAGACGATTTCACAAGGATTAGTGAATCAAGGAGAGATTCGGCCTGCCTTGGACAGACTCTaGGCTGCACTTCCCACGAGG +
Preference number: 4 (lower is better)
Translates to: TSLKTISQGLVNQGEIRPALDRL*AALPTR
Trigger: CCTCGTGGGAAGTGCAGCTCAGAGTCTGTCCAAGGC...AGGCCGAATCTCTCCTTGATTCACTAATCCTTGTGAAATCGTCTTCAGACTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp CTCTTAGTGGTAGATCAGAAAGTGCTAGGCAAGAAAGCCTGGAAAGTCCAGCTCCCGACTGTTTACCTGTaGCATCTGAGCCCCTGTGAT +
Preference number: 4 (lower is better)
Translates to: LLVVDQKVLGKKAWKVQLPTVYL*HLSPCD
Trigger: ATCACAGGGGCTCAGATGTCACAGGTAAACAGTCGG...GAGCTGGACTTTCCAGGCTTTCTTGCCTAGCACTTTCTGATCTACCACTAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCCAGAGTTGGCCAGACTaGCACCTGCTGCGGCTGGAT +
Preference number: 4 (lower is better)
Translates to: HFSLLIERERPAHHLLYSQSWPD*HLLRLD
Trigger: ATCCAGCCGCAGCAGGTGGCAGTCTGGCCAACTCTG...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp TCAGGGATTATCAGTCATTCCAGGAGAAAGGTTAAGACTGTGTCAGCAAATCTGCAGAGTTGGCCAGACTaGCACCTGCTGCGGCTGGAT +
Preference number: 4 (lower is better)
Translates to: SGIISHSRRKVKTVSANLQSWPD*HLLRLD
Trigger: ATCCAGCCGCAGCAGGTGGCAGTCTGGCCAACTCTG...CAGATTTGCTGACACAGTCTTAACCTTTCTCCTGGAATGACTGATAATCCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp ATACCCACACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGAGTTTTCATACACATTaGCATCATAGCGGCCGAGAA +
Preference number: 4 (lower is better)
Translates to: IPTQQAAGAYVRATHSHLSFHTH*HHSGRE
Trigger: TTCTCGGCCGCTATGATGGCAATGTGTATGAAAACT...CAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGTGTGGGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp TCAGGGATTATCAGTCATTCCAGGAGAAAGGTTAAGACTGTGTCAGCAAATCTGCCTGCTGCTCTTCGGTaGCCTGGTGAAGCAAGGTGG +
Preference number: 4 (lower is better)
Translates to: SGIISHSRRKVKTVSANLPAALR*PGEARW
Trigger: CCACCTTGCTTCACCAGGCCACCGAAGAGCAGCAGG...CAGATTTGCTGACACAGTCTTAACCTTTCTCCTGGAATGACTGATAATCCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp ATACCCACACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGTTGAGAATGAACTCTTaGGTCTTGGGGTCATATGTG +
Preference number: 4 (lower is better)
Translates to: IPTQQAAGAYVRATHSHLLRMNS*VLGSYV
Trigger: CACATATGACCCCAAGACCCAAGAGTTCATTCTCAA...CAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGTGTGGGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp ACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGGGTTTCTAGATGGAAGTCACAGTTaGGCTGTTGAGAATGAACTC +
Preference number: 4 (lower is better)
Translates to: TAGSRGICKGHTLTSGFLDGSHS*AVENEL
Trigger: GAGTTCATTCTCAACAGCCCAACTGTGACTTCCATC...TAGAAACCCAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp TCAGGGATTATCAGTCATTCCAGGAGAAAGGTTAAGACTGTGTCAGCAAATCTGCCCAACAGTGATGCCTaGCAGAGGCTTGTGGGTCCC +
Preference number: 4 (lower is better)
Translates to: SGIISHSRRKVKTVSANLPNSDA*QRLVGP
Trigger: GGGACCCACAAGCCTCTGCCAGGCATCACTGTTGGG...CAGATTTGCTGACACAGTCTTAACCTTTCTCCTGGAATGACTGATAATCCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp ACAAGTCTGAAGACGATTTCACAAGGATTAGTGAATCAAGGAGAGATTCGGCCTCCCAACAGTGATGCCTaGCAGAGGCTTGTGGGTCCC +
Preference number: 4 (lower is better)
Translates to: TSLKTISQGLVNQGEIRPPNSDA*QRLVGP
Trigger: GGGACCCACAAGCCTCTGCCAGGCATCACTGTTGGG...AGGCCGAATCTCTCCTTGATTCACTAATCCTTGTGAAATCGTCTTCAGACTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp TCAGGGATTATCAGTCATTCCAGGAGAAAGGTTAAGACTGTGTCAGCAAATCTGGGAAGGCATAGGCGGTaGCCAGGAGCGGGAAGAGTT +
Preference number: 4 (lower is better)
Translates to: SGIISHSRRKVKTVSANLGRHRR*PGAGRV
Trigger: AACTCTTCCCGCTCCTGGCCACCGCCTATGCCTTCC...CAGATTTGCTGACACAGTCTTAACCTTTCTCCTGGAATGACTGATAATCCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCGGAAGGCATAGGCGGTaGCCAGGAGCGGGAAGAGTT +
Preference number: 4 (lower is better)
Translates to: HFSLLIERERPAHHLLYSGRHRR*PGAGRV
Trigger: AACTCTTCCCGCTCCTGGCCACCGCCTATGCCTTCC...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp ATACCCACACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGCGTGACGTAAATATTTaGAATCCCACTGCTGTGAGA +
Preference number: 4 (lower is better)
Translates to: IPTQQAAGAYVRATHSHLRDVNI*NPTAVR
Trigger: TCTCACAGCAGTGGGATTCCAAATATTTACGTCACG...CAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGTGTGGGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp CTCTTAGTGGTAGATCAGAAAGTGCTAGGCAAGAAAGCCTGGAAAGTCCAGCTCTCCACGCCACTTCCTTaGTCTTCCTGTGACTCACTT +
Preference number: 4 (lower is better)
Translates to: LLVVDQKVLGKKAWKVQLSTPLP*SSCDSL
Trigger: AAGTGAGTCACAGGAAGAGCAAGGAAGTGGCGTGGA...GAGCTGGACTTTCCAGGCTTTCTTGCCTAGCACTTTCTGATCTACCACTAAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp ACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGGGTTTCTAAGTTTTCATACACATTaGCATCATAGCGGCCGAGAA +
Preference number: 4 (lower is better)
Translates to: TAGSRGICKGHTLTSGFLSFHTH*HHSGRE
Trigger: TTCTCGGCCGCTATGATGGCAATGTGTATGAAAACT...TAGAAACCCAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp CTCTTAGTGGTAGATCAGAAAGTGCTAGGCAAGAAAGCCTGGAAAGTCCAGCTCTCTTGGGGTCATATGTaGCAGTGGTTTCCAAGCCTC +
Preference number: 4 (lower is better)
Translates to: LLVVDQKVLGKKAWKVQLSWGHM*QWFPSL
Trigger: GAGGCTTGGAAACCACTGCCACATATGACCCCAAGA...GAGCTGGACTTTCCAGGCTTTCTTGCCTAGCACTTTCTGATCTACCACTAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp ACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGGGTTTCTAACCTTACGAAAACCATaGTCCCATATGTCAGCTTGT +
Preference number: 4 (lower is better)
Translates to: TAGSRGICKGHTLTSGFLTLRKP*SHMSAC
Trigger: ACAAGCTGACATATGGGACCATGGTTTTCGTAAGGT...TAGAAACCCAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp ATACCCACACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGCTCTGTCTTGAATCTTaGGGAGTTTATCTGCAAAGA +
Preference number: 4 (lower is better)
Translates to: IPTQQAAGAYVRATHSHLLCLES*GVYLQR
Trigger: TCTTTGCAGATAAACTCCCCAAGATTCAAGACAGAG...CAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGTGTGGGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp CTCTTAGTGGTAGATCAGAAAGTGCTAGGCAAGAAAGCCTGGAAAGTCCAGCTCTTTACCTGTGACATCTaGGCCCCTGTGATGATGTTC +
Preference number: 4 (lower is better)
Translates to: LLVVDQKVLGKKAWKVQLFTCDI*APVMMF
Trigger: GAACATCATCACAGGGGCTCAGATGTCACAGGTAAA...GAGCTGGACTTTCCAGGCTTTCTTGCCTAGCACTTTCTGATCTACCACTAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp AGGTCCTACGTCGGCCTGGGCTACTACTGCACCTACAACACTGGATTCTCATTTCTACCATCCAAGATGTaGGTGATTAACTCTGGATTG +
Preference number: 4 (lower is better)
Translates to: RSYVGLGYYCTYNTGFSFLPSKM*VINSGL
Trigger: CAATCCAGAGTTAATCACGCACATCTTGGATGGTAG...AAATGAGAATCCAGTGTTGTAGGTGCAGTAGTAGCCCAGGCCGACGTAGGACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
CDS-3UTR CCA 90 bp CTCTTAGTGGTAGATCAGAAAGTGCTAGGCAAGAAAGCCTGGAAAGTCCAGCTCGGTCATATGTGGCAGTaGTTTCCAAGCCTCGAAGAT +
Preference number: 4 (lower is better)
Translates to: LLVVDQKVLGKKAWKVQLGHMWQ*FPSLED
Trigger: ATCTTCGAGGCTTGGAAACCACTGCCACATATGACC...GAGCTGGACTTTCCAGGCTTTCTTGCCTAGCACTTTCTGATCTACCACTAAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp CTCTTAGTGGTAGATCAGAAAGTGCTAGGCAAGAAAGCCTGGAAAGTCCAGCTCTCACTCAGGTCGCCTTaGCCAATGCTCTCATTAATC +
Preference number: 4 (lower is better)
Translates to: LLVVDQKVLGKKAWKVQLSLRSP*PMLSLI
Trigger: GATTAATGAGAGCATTGGCCAAGGCGACCTGAGTGA...GAGCTGGACTTTCCAGGCTTTCTTGCCTAGCACTTTCTGATCTACCACTAAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp AGGTCCTACGTCGGCCTGGGCTACTACTGCACCTACAACACTGGATTCTCATTTCGTGACGTAAATATTTaGAATCCCACTGCTGTGAGA +
Preference number: 4 (lower is better)
Translates to: RSYVGLGYYCTYNTGFSFRDVNI*NPTAVR
Trigger: TCTCACAGCAGTGGGATTCCAAATATTTACGTCACG...AAATGAGAATCCAGTGTTGTAGGTGCAGTAGTAGCCCAGGCCGACGTAGGACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp ACAAGTCTGAAGACGATTTCACAAGGATTAGTGAATCAAGGAGAGATTCGGCCTCCGACTGTTTACCTGTaGCATCTGAGCCCCTGTGAT +
Preference number: 4 (lower is better)
Translates to: TSLKTISQGLVNQGEIRPPTVYL*HLSPCD
Trigger: ATCACAGGGGCTCAGATGTCACAGGTAAACAGTCGG...AGGCCGAATCTCTCCTTGATTCACTAATCCTTGTGAAATCGTCTTCAGACTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp CTCTTAGTGGTAGATCAGAAAGTGCTAGGCAAGAAAGCCTGGAAAGTCCAGCTCGATTTCTTCAGGGTCTaGGATGCCAAATTCCCTCAT +
Preference number: 4 (lower is better)
Translates to: LLVVDQKVLGKKAWKVQLDFFRV*DAKFPH
Trigger: ATGAGGGAATTTGGCATCGCAGACCCTGAAGAAATC...GAGCTGGACTTTCCAGGCTTTCTTGCCTAGCACTTTCTGATCTACCACTAAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
CDS-3UTR GCA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCAGGTGGGCAGGAACATaGCCAAGTGAAGGTCCAAAG +
Preference number: 4 (lower is better)
Translates to: HFSLLIERERPAHHLLYSRWAGT*PSEGPK
Trigger: CTTTGGACCTTCACTTGGGCATGTTCCTGCCCACCT...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCCAATGGTGCATGCCTTaGACAGACTCTGAGCTGCAC +
Preference number: 4 (lower is better)
Translates to: HFSLLIERERPAHHLLYSQWCMP*TDSELH
Trigger: GTGCAGCTCAGAGTCTGTCCAAGGCATGCACCATTG...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCAATGGCAATGGTGCATaGCTTGGACAGACTCTGAGC +
Preference number: 4 (lower is better)
Translates to: HFSLLIERERPAHHLLYSNGNGA*LGQTLS
Trigger: GCTCAGAGTCTGTCCAAGGCATGCACCATTGCCATT...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp ACAAGTCTGAAGACGATTTCACAAGGATTAGTGAATCAAGGAGAGATTCGGCCTTCCACGCCACTTCCTTaGTCTTCCTGTGACTCACTT +
Preference number: 4 (lower is better)
Translates to: TSLKTISQGLVNQGEIRPSTPLP*SSCDSL
Trigger: AAGTGAGTCACAGGAAGAGCAAGGAAGTGGCGTGGA...AGGCCGAATCTCTCCTTGATTCACTAATCCTTGTGAAATCGTCTTCAGACTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp TCAGGGATTATCAGTCATTCCAGGAGAAAGGTTAAGACTGTGTCAGCAAATCTGTCCACGCCACTTCCTTaGTCTTCCTGTGACTCACTT +
Preference number: 4 (lower is better)
Translates to: SGIISHSRRKVKTVSANLSTPLP*SSCDSL
Trigger: AAGTGAGTCACAGGAAGAGCAAGGAAGTGGCGTGGA...CAGATTTGCTGACACAGTCTTAACCTTTCTCCTGGAATGACTGATAATCCCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp ACAAGTCTGAAGACGATTTCACAAGGATTAGTGAATCAAGGAGAGATTCGGCCTCCGTCTGGGCGTAGGTaGCAATTATCTGGAGTTCTT +
Preference number: 4 (lower is better)
Translates to: TSLKTISQGLVNQGEIRPPSGRR*QLSGVL
Trigger: AAGAACTCCAGATAATTGGCACCTACGCCCAGACGG...AGGCCGAATCTCTCCTTGATTCACTAATCCTTGTGAAATCGTCTTCAGACTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp ACAAGTCTGAAGACGATTTCACAAGGATTAGTGAATCAAGGAGAGATTCGGCCTTCTTGGGGTCATATGTaGCAGTGGTTTCCAAGCCTC +
Preference number: 4 (lower is better)
Translates to: TSLKTISQGLVNQGEIRPSWGHM*QWFPSL
Trigger: GAGGCTTGGAAACCACTGCCACATATGACCCCAAGA...AGGCCGAATCTCTCCTTGATTCACTAATCCTTGTGAAATCGTCTTCAGACTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp CTCTTAGTGGTAGATCAGAAAGTGCTAGGCAAGAAAGCCTGGAAAGTCCAGCTCTTGAGAATGAACTCTTaGGTCTTGGGGTCATATGTG +
Preference number: 4 (lower is better)
Translates to: LLVVDQKVLGKKAWKVQLLRMNS*VLGSYV
Trigger: CACATATGACCCCAAGACCCAAGAGTTCATTCTCAA...GAGCTGGACTTTCCAGGCTTTCTTGCCTAGCACTTTCTGATCTACCACTAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCTTTACCTGTGACATCTaGGCCCCTGTGATGATGTTC +
Preference number: 4 (lower is better)
Translates to: HFSLLIERERPAHHLLYSFTCDI*APVMMF
Trigger: GAACATCATCACAGGGGCTCAGATGTCACAGGTAAA...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp ACAAGTCTGAAGACGATTTCACAAGGATTAGTGAATCAAGGAGAGATTCGGCCTCTTCAGGGTCTGCGATaGCAAATTCCCTCATCTTCT +
Preference number: 4 (lower is better)
Translates to: TSLKTISQGLVNQGEIRPLQGLR*QIPSSS
Trigger: AGAAGATGAGGGAATTTGGCATCGCAGACCCTGAAG...AGGCCGAATCTCTCCTTGATTCACTAATCCTTGTGAAATCGTCTTCAGACTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
CDS-3UTR GCA 90 bp TCAGGGATTATCAGTCATTCCAGGAGAAAGGTTAAGACTGTGTCAGCAAATCTGATCGAATGGCAATGGTaGATGCCTTGGACAGACTCT +
Preference number: 4 (lower is better)
Translates to: SGIISHSRRKVKTVSANLIEWQW*MPWTDS
Trigger: AGAGTCTGTCCAAGGCATGCACCATTGCCATTCGAT...CAGATTTGCTGACACAGTCTTAACCTTTCTCCTGGAATGACTGATAATCCCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp TCAGGGATTATCAGTCATTCCAGGAGAAAGGTTAAGACTGTGTCAGCAAATCTGTATTTGGAATCCCACTaGTGTGAGAATAGCCGTGCC +
Preference number: 4 (lower is better)
Translates to: SGIISHSRRKVKTVSANLYLESH*CENSRA
Trigger: GGCACGGCTATTCTCACAGCAGTGGGATTCCAAATA...CAGATTTGCTGACACAGTCTTAACCTTTCTCCTGGAATGACTGATAATCCCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCCCGTCAGGCTTCACCTaGGCATATTTCATCAACATG +
Preference number: 4 (lower is better)
Translates to: HFSLLIERERPAHHLLYSPSGFT*AYFINM
Trigger: CATGTTGATGAAATATGCCCAGGTGAAGCCTGACGG...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCTCACTCAGGTCGCCTTaGCCAATGCTCTCATTAATC +
Preference number: 4 (lower is better)
Translates to: HFSLLIERERPAHHLLYSSLRSP*PMLSLI
Trigger: GATTAATGAGAGCATTGGCCAAGGCGACCTGAGTGA...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp CTCTTAGTGGTAGATCAGAAAGTGCTAGGCAAGAAAGCCTGGAAAGTCCAGCTCCTCTGTCTTGAATCTTaGGGAGTTTATCTGCAAAGA +
Preference number: 4 (lower is better)
Translates to: LLVVDQKVLGKKAWKVQLLCLES*GVYLQR
Trigger: TCTTTGCAGATAAACTCCCCAAGATTCAAGACAGAG...GAGCTGGACTTTCCAGGCTTTCTTGCCTAGCACTTTCTGATCTACCACTAAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR TCA 90 bp ACAAGTCTGAAGACGATTTCACAAGGATTAGTGAATCAAGGAGAGATTCGGCCTTTATACTGCTGCGTCTaGAAATCCAAAATCTGGGGC +
Preference number: 4 (lower is better)
Translates to: TSLKTISQGLVNQGEIRPLYCCV*KSKIWG
Trigger: GCCCCAGATTTTGGATTTTCAGACGCAGCAGTATAA...AGGCCGAATCTCTCCTTGATTCACTAATCCTTGTGAAATCGTCTTCAGACTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCCTTGGGGAGTTTATCTaGAAAGACCTTAACGGTCAC +
Preference number: 4 (lower is better)
Translates to: HFSLLIERERPAHHLLYSLGEFI*KDLNGH
Trigger: GTGACCGTTAAGGTCTTTGCAGATAAACTCCCCAAG...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp ACAAGTCTGAAGACGATTTCACAAGGATTAGTGAATCAAGGAGAGATTCGGCCTCTTGGGGAGTTTATCTaGAAAGACCTTAACGGTCAC +
Preference number: 4 (lower is better)
Translates to: TSLKTISQGLVNQGEIRPLGEFI*KDLNGH
Trigger: GTGACCGTTAAGGTCTTTGCAGATAAACTCCCCAAG...AGGCCGAATCTCTCCTTGATTCACTAATCCTTGTGAAATCGTCTTCAGACTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCGATGGAAGTCACAGTTaGGCTGTTGAGAATGAACTC +
Preference number: 4 (lower is better)
Translates to: HFSLLIERERPAHHLLYSDGSHS*AVENEL
Trigger: GAGTTCATTCTCAACAGCCCAACTGTGACTTCCATC...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCCAATTTCTACCAATCTaGCTGCACGTAGCTTGTAGG +
Preference number: 4 (lower is better)
Translates to: HFSLLIERERPAHHLLYSQFLPI*LHVACR
Trigger: CCTACAAGCTACGTGCAGCCAGATTGGTAGAAATTG...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp TCAGGGATTATCAGTCATTCCAGGAGAAAGGTTAAGACTGTGTCAGCAAATCTGCAATTTCTACCAATCTaGCTGCACGTAGCTTGTAGG +
Preference number: 4 (lower is better)
Translates to: SGIISHSRRKVKTVSANLQFLPI*LHVACR
Trigger: CCTACAAGCTACGTGCAGCCAGATTGGTAGAAATTG...CAGATTTGCTGACACAGTCTTAACCTTTCTCCTGGAATGACTGATAATCCCTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCTCAGTGGGGACTTCTTaGCCCACTCAAACAAGTTTT +
Preference number: 4 (lower is better)
Translates to: HFSLLIERERPAHHLLYSSVGTS*PTQTSF
Trigger: AAAACTTGTTTGAGTGGGCCAAGAAGTCCCCACTGA...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp TCAGGGATTATCAGTCATTCCAGGAGAAAGGTTAAGACTGTGTCAGCAAATCTGTCAGTGGGGACTTCTTaGCCCACTCAAACAAGTTTT +
Preference number: 4 (lower is better)
Translates to: SGIISHSRRKVKTVSANLSVGTS*PTQTSF
Trigger: AAAACTTGTTTGAGTGGGCCAAGAAGTCCCCACTGA...CAGATTTGCTGACACAGTCTTAACCTTTCTCCTGGAATGACTGATAATCCCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR GCA 90 bp TCAGGGATTATCAGTCATTCCAGGAGAAAGGTTAAGACTGTGTCAGCAAATCTGAGTTTTCATACACATTaGCATCATAGCGGCCGAGAA +
Preference number: 4 (lower is better)
Translates to: SGIISHSRRKVKTVSANLSFHTH*HHSGRE
Trigger: TTCTCGGCCGCTATGATGGCAATGTGTATGAAAACT...CAGATTTGCTGACACAGTCTTAACCTTTCTCCTGGAATGACTGATAATCCCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCTTGAGAATGAACTCTTaGGTCTTGGGGTCATATGTG +
Preference number: 4 (lower is better)
Translates to: HFSLLIERERPAHHLLYSLRMNS*VLGSYV
Trigger: CACATATGACCCCAAGACCCAAGAGTTCATTCTCAA...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CCA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCCTCATGTTGGAAGTCTaGATCGTTCAGAATCAAGTT +
Preference number: 4 (lower is better)
Translates to: HFSLLIERERPAHHLLYSLMLEV*IVQNQV
Trigger: AACTTGATTCTGAACGATCCAGACTTCCAACATGAG...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
CDS-3UTR CCA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCCTCTGTCTTGAATCTTaGGGAGTTTATCTGCAAAGA +
Preference number: 4 (lower is better)
Translates to: HFSLLIERERPAHHLLYSLCLES*GVYLQR
Trigger: TCTTTGCAGATAAACTCCCCAAGATTCAAGACAGAG...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp GCGGGTGCATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCGGCAGTGCGCCTCACTaGCGCGAACAAGGTCGACAG +
Preference number: 5 (lower is better)
Translates to: AGACHCQEDQSGSLVPERGSAPH*REQGRQ
Trigger: CTGTCGACCTTGTTCGCGCAAGTGAGGCGCACTGCC...GCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp GCGGGTGCATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCATGCCTGGCAGAGGCTaGTGGGTCCCAATCTCACGG +
Preference number: 5 (lower is better)
Translates to: AGACHCQEDQSGSLVPERMPGRG*WVPISR
Trigger: CCGTGAGATTGGGACCCACAAGCCTCTGCCAGGCAT...GCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp GCGGGTGCATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCACCAAAGCCACAGCGTaGGGGCGAGTCACTGTGAGC +
Preference number: 5 (lower is better)
Translates to: AGACHCQEDQSGSLVPERTKATA*GRVTVS
Trigger: GCTCACAGTGACTCGCCCCAACGCTGTGGCTTTGGT...GCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS GCA 90 bp CCTGCTGCTCTTCGGTGGCCTGGTGAAGCAAGGTGGGCAGGAACATaGCCAAGTGAAGGTCCAAAGGCTCAGGATGCCCTCGGTGCACAG +
Preference number: 5 (lower is better)
Translates to: PAALRWPGEARWAGT*PSEGPKAQDALGAQ
Trigger: CTGTGCACCGAGGGCATCCTGAGCCTTTGGACCTTCACTTGGGCATGTTCCTGCCCACCTTGCTTCACCAGGCCACCGAAGAGCAGCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000148601.2
CDS CCA 90 bp TCCACCAGAGTTGGCCAGACTGCCACCTGCTGCGGCTGGATACGCTaGCTCGGCAGGTCATTCAAGTACGACACCATACCACCCACCAGC +
Preference number: 5 (lower is better)
Translates to: STRVGQTATCCGWIR*LGRSFKYDTIPPTS
Trigger: GCTGGTGGGTGGTATGGTGTCGTACTTGAATGACCTGCCGAGCCAGCGTATCCAGCCGCAGCAGGTGGCAGTCTGGCCAACTCTGGTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CCA 90 bp GTAGGCTTCTGTCAGGCTGTCCAGGCTGTTAATGTCCACCAGAGTTaGCCAGACTGCCACCTGCTGCGGCTGGATACGCTGGCTCGGCAG +
Preference number: 5 (lower is better)
Translates to: VGFCQAVQAVNVHQS*PDCHLLRLDTLARQ
Trigger: CTGCCGAGCCAGCGTATCCAGCCGCAGCAGGTGGCAGTCTGGCCAACTCTGGTGGACATTAACAGCCTGGACAGCCTGACAGAAGCCTAC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp GCGGGTGCATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCTCGTGGACCTCTGTCTaGTTCAGTGGGGACTTCTTG +
Preference number: 5 (lower is better)
Translates to: AGACHCQEDQSGSLVPERSWTSV*FSGDFL
Trigger: CAAGAAGTCCCCACTGAACAAGACAGAGGTCCACGA...GCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS GCA 90 bp ATTTCTCGACGGCGCCGGGTGTTCTCCGGACTACCATCCAAGATGTaGGTGATTAACTCTGGATTGAAGGTGGCGGCGGCCCGCTCCTTG +
Preference number: 5 (lower is better)
Translates to: ISRRRRVFSGLPSKM*VINSGLKVAAARSL
Trigger: CAAGGAGCGGGCCGCCGCCACCTTCAATCCAGAGTTAATCACGCACATCTTGGATGGTAGTCCGGAGAACACCCGGCGCCGTCGAGAAAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
CDS GCA 90 bp TCCAGGCTGTTAATGTCCACCAGAGTTGGCCAGACTGCCACCTGCTaGGGCTGGATACGCTGGCTCGGCAGGTCATTCAAGTACGACACC +
Preference number: 5 (lower is better)
Translates to: SRLLMSTRVGQTATC*GWIRWLGRSFKYDT
Trigger: GGTGTCGTACTTGAATGACCTGCCGAGCCAGCGTATCCAGCCGCAGCAGGTGGCAGTCTGGCCAACTCTGGTGGACATTAACAGCCTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS GCA 90 bp TGCCCTCGGTGCACAGAGCGTGGCCCATCTCCGTCTGGGCGTAGGTaGCAATTATCTGGAGTTCTTGGGACGGGTGCATCCATTTCTCCT +
Preference number: 5 (lower is better)
Translates to: CPRCTERGPSPSGRR*QLSGVLGTGASISP
Trigger: AGGAGAAATGGATGCACCCGTCCCAAGAACTCCAGATAATTGGCACCTACGCCCAGACGGAGATGGGCCACGCTCTGTGCACCGAGGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp GGCTTAGGATCCATCTTCTCAACTAACACTCAGCAGATGGCTGGGGCCCAGGGCATGCCTGGCAGAGGCTaGTGGGTCCCAATCTCACGG +
Preference number: 5 (lower is better)
Translates to: GLGSIFSTNTQQMAGAQGMPGRG*WVPISR
Trigger: CCGTGAGATTGGGACCCACAAGCCTCTGCCAGGCAT...GCCCTGGGCCCCAGCCATCTGCTGAGTGTTAGTTGAGAAGATGGATCCTAAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp ATACCCACACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGGGCAGTGCGCCTCACTaGCGCGAACAAGGTCGACAG +
Preference number: 5 (lower is better)
Translates to: IPTQQAAGAYVRATHSHLGSAPH*REQGRQ
Trigger: CTGTCGACCTTGTTCGCGCAAGTGAGGCGCACTGCC...CAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGTGTGGGTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp GGCTTAGGATCCATCTTCTCAACTAACACTCAGCAGATGGCTGGGGCCCAGGGCACCAAAGCCACAGCGTaGGGGCGAGTCACTGTGAGC +
Preference number: 5 (lower is better)
Translates to: GLGSIFSTNTQQMAGAQGTKATA*GRVTVS
Trigger: GCTCACAGTGACTCGCCCCAACGCTGTGGCTTTGGT...GCCCTGGGCCCCAGCCATCTGCTGAGTGTTAGTTGAGAAGATGGATCCTAAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp ATACCCACACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGACCAAAGCCACAGCGTaGGGGCGAGTCACTGTGAGC +
Preference number: 5 (lower is better)
Translates to: IPTQQAAGAYVRATHSHLTKATA*GRVTVS
Trigger: GCTCACAGTGACTCGCCCCAACGCTGTGGCTTTGGT...CAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGTGTGGGTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS TCA 90 bp AGTCAAAGGCATCCACCAAAGCCACAGCGTTGGGGCGAGTCACTGTaGGCAGCTCCAGGATCCGACTGTTTACCTGTGACATCTGAGCCC +
Preference number: 5 (lower is better)
Translates to: SQRHPPKPQRWGESL*AAPGSDCLPVTSEP
Trigger: GGGCTCAGATGTCACAGGTAAACAGTCGGATCCTGGAGCTGCTCACAGTGACTCGCCCCAACGCTGTGGCTTTGGTGGATGCCTTTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CCA 90 bp CTCCCCCTCGAAGGTGCAGGCCGGGGTAAACGTGACGTAAATATTTaGAATCCCACTGCTGTGAGAATAGCCGTGCCCACCGCAAGCCAT +
Preference number: 5 (lower is better)
Translates to: LPLEGAGRGKRDVNI*NPTAVRIAVPTASH
Trigger: ATGGCTTGCGGTGGGCACGGCTATTCTCACAGCAGTGGGATTCCAAATATTTACGTCACGTTTACCCCGGCCTGCACCTTCGAGGGGGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CCA 90 bp CTGTTAATGTCCACCAGAGTTGGCCAGACTGCCACCTGCTGCGGCTaGATACGCTGGCTCGGCAGGTCATTCAAGTACGACACCATACCA +
Preference number: 5 (lower is better)
Translates to: LLMSTRVGQTATCCG*IRWLGRSFKYDTIP
Trigger: TGGTATGGTGTCGTACTTGAATGACCTGCCGAGCCAGCGTATCCAGCCGCAGCAGGTGGCAGTCTGGCCAACTCTGGTGGACATTAACAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp GCGGGTGCATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCGTTGAGAATGAACTCTaGGGTCTTGGGGTCATATGT +
Preference number: 5 (lower is better)
Translates to: AGACHCQEDQSGSLVPERVENEL*GLGVIC
Trigger: ACATATGACCCCAAGACCCAAGAGTTCATTCTCAAC...GCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp GCGGGTGCATGCCATTGCCAGGAAGACCAGAGTGGGAGCTTAGTCCCGGAGCGCTCTTCGATACCAGCATaGGCTGTCCAGGTAGTAAAA +
Preference number: 5 (lower is better)
Translates to: AGACHCQEDQSGSLVPERSSIPA*AVQVVK
Trigger: TTTTACTACCTGGACAGCCAATGCTGGTATCGAAGA...GCGCTCCGGGACTAAGCTCCCACTCTGGTCTTCCTGGCAATGGCATGCACCCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS GCA 90 bp AGCCTCGAAGATGAGTTCCGTGGCCCATCTCCGTCTGGGCGTAGGTaGCAATTATCTGGAGTTCTTGGGACGGGTGCATCCATTTCTCCT +
Preference number: 5 (lower is better)
Translates to: SLEDEFRGPSPSGRR*QLSGVLGTGASISP
Trigger: AGGAGAAATGGATGCACCCGTCCCAAGAACTCCAGATAATTGGCACCTACGCCCAGACGGAGATGGGCCACGGAACTCATCTTCGAGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072948.11
CDS CCA 90 bp AACTTGGGGCCGATATCCCCAACAGTGATGCCTGGCAGAGGCTTGTaGGTCCCAATCTCACGGATAGGGACAACAAAGGCATGTAACCCG +
Preference number: 5 (lower is better)
Translates to: NLGPISPTVMPGRGL*VPISRIGTTKACNP
Trigger: CGGGTTACATGCCTTTGTTGTCCCTATCCGTGAGATTGGGACCCACAAGCCTCTGCCAGGCATCACTGTTGGGGATATCGGCCCCAAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp AGGTCCTACGTCGGCCTGGGCTACTACTGCACCTACAACACTGGATTCTCATTTCCCCCAGGCCACCACTaGATGGAAGTCACAGTTGGG +
Preference number: 5 (lower is better)
Translates to: RSYVGLGYYCTYNTGFSFPPGHH*MEVTVG
Trigger: CCCAACTGTGACTTCCATCAAGTGGTGGCCTGGGGG...AAATGAGAATCCAGTGTTGTAGGTGCAGTAGTAGCCCAGGCCGACGTAGGACCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp AGCATCTGGGAGGCTGAGGATCAGAGGTCAAGGCCACTCTGGGCCCTGTCTCAACTCACTCAGGTCGCCTaGGCCAATGCTCTCATTAAT +
Preference number: 5 (lower is better)
Translates to: SIWEAEDQRSRPLWALSQLTQVA*ANALIN
Trigger: ATTAATGAGAGCATTGGCCAAGGCGACCTGAGTGAG...TTGAGACAGGGCCCAGAGTGGCCTTGACCTCTGATCCTCAGCCTCCCAGATGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp ATACCCACACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGTCGTGGACCTCTGTCTaGTTCAGTGGGGACTTCTTG +
Preference number: 5 (lower is better)
Translates to: IPTQQAAGAYVRATHSHLSWTSV*FSGDFL
Trigger: CAAGAAGTCCCCACTGAACAAGACAGAGGTCCACGA...CAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGTGTGGGTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS GCA 90 bp ATCTGCAAAGACCTTAACGGTCACGTAGTGGCAGTGCGCCTCACTTaGGCGAACAAGGTCGACAGAAGTCAAGTTCCACGCCACTTCCTT +
Preference number: 5 (lower is better)
Translates to: ICKDLNGHVVAVRLT*ANKVDRSQVPRHFL
Trigger: AAGGAAGTGGCGTGGAACTTGACTTCTGTCGACCTTGTTCGCGCAAGTGAGGCGCACTGCCACTACGTGACCGTTAAGGTCTTTGCAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CCA 90 bp CTCTTCATAACCAAACTTGGGGCCGATATCCCCAACAGTGATGCCTaGCAGAGGCTTGTGGGTCCCAATCTCACGGATAGGGACAACAAA +
Preference number: 5 (lower is better)
Translates to: LFITKLGADIPNSDA*QRLVGPNLTDRDNK
Trigger: TTTGTTGTCCCTATCCGTGAGATTGGGACCCACAAGCCTCTGCCAGGCATCACTGTTGGGGATATCGGCCCCAAGTTTGGTTATGAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp GGCTTAGGATCCATCTTCTCAACTAACACTCAGCAGATGGCTGGGGCCCAGGGCGGGCCTGAAGGTTTTTaGCAGCAATTTCTACCAATC +
Preference number: 5 (lower is better)
Translates to: GLGSIFSTNTQQMAGAQGGPEGF*QQFLPI
Trigger: GATTGGTAGAAATTGCTGCAAAAAACCTTCAGGCCC...GCCCTGGGCCCCAGCCATCTGCTGAGTGTTAGTTGAGAAGATGGATCCTAAGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS GCA 90 bp ACTGTATCGAATGGCAATGGTGCATGCCTTGGACAGACTCTGAGCTaGACTTCCCACGAGGAAGGACCTTACGAAAACCATGGTCCCATA +
Preference number: 5 (lower is better)
Translates to: TVSNGNGACLGQTLS*TSHEEGPYENHGPI
Trigger: TATGGGACCATGGTTTTCGTAAGGTCCTTCCTCGTGGGAAGTGCAGCTCAGAGTCTGTCCAAGGCATGCACCATTGCCATTCGATACAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CCA 90 bp ACGCTGGCTTCGAGTGAGGAAGTTATAGTCCTCATGTTGGAAGTCTaGATCGTTCAGAATCAAGTTCTCGATTTCTCGACGGCGCCGGGT +
Preference number: 5 (lower is better)
Translates to: TLASSEEVIVLMLEV*IVQNQVLDFSTAPG
Trigger: ACCCGGCGCCGTCGAGAAATCGAGAACTTGATTCTGAACGATCCAGACTTCCAACATGAGGACTATAACTTCCTCACTCGAAGCCAGCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
CDS-3UTR CAA 90 bp AGGTCCTACGTCGGCCTGGGCTACTACTGCACCTACAACACTGGATTCTCATTTCTCACTCAGGTCGCCTaGGCCAATGCTCTCATTAAT +
Preference number: 5 (lower is better)
Translates to: RSYVGLGYYCTYNTGFSFLTQVA*ANALIN
Trigger: ATTAATGAGAGCATTGGCCAAGGCGACCTGAGTGAG...AAATGAGAATCCAGTGTTGTAGGTGCAGTAGTAGCCCAGGCCGACGTAGGACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp ATACCCACACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGTCTTCGATACCAGCATaGGCTGTCCAGGTAGTAAAA +
Preference number: 5 (lower is better)
Translates to: IPTQQAAGAYVRATHSHLSSIPA*AVQVVK
Trigger: TTTTACTACCTGGACAGCCAATGCTGGTATCGAAGA...CAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGTGTGGGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CCA 90 bp CACCACTTGATGGAAGTCACAGTTGGGCTGTTGAGAATGAACTCTTaGGTCTTGGGGTCATATGTGGCAGTGGTTTCCAAGCCTCGAAGA +
Preference number: 5 (lower is better)
Translates to: HHLMEVTVGLLRMNS*VLGSYVAVVSKPRR
Trigger: TCTTCGAGGCTTGGAAACCACTGCCACATATGACCCCAAGACCCAAGAGTTCATTCTCAACAGCCCAACTGTGACTTCCATCAAGTGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCCCCCCAGGCCACCACTaGATGGAAGTCACAGTTGGG +
Preference number: 5 (lower is better)
Translates to: HFSLLIERERPAHHLLYSPPGHH*MEVTVG
Trigger: CCCAACTGTGACTTCCATCAAGTGGTGGCCTGGGGG...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCATGCCTGGCAGAGGCTaGTGGGTCCCAATCTCACGG +
Preference number: 5 (lower is better)
Translates to: HFSLLIERERPAHHLLYSMPGRG*WVPISR
Trigger: CCGTGAGATTGGGACCCACAAGCCTCTGCCAGGCAT...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp ACAGCAGGCAGCAGGGGCATATGTAAGGGCCACACACTCACATCTGGGTTTCTAGGGCCTGAAGGTTTTTaGCAGCAATTTCTACCAATC +
Preference number: 5 (lower is better)
Translates to: TAGSRGICKGHTLTSGFLGPEGF*QQFLPI
Trigger: GATTGGTAGAAATTGCTGCAAAAAACCTTCAGGCCC...TAGAAACCCAGATGTGAGTGTGTGGCCCTTACATATGCCCCTGCTGCCTGCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CCA 90 bp GACTCTGAGCTGCACTTCCCACGAGGAAGGACCTTACGAAAACCATaGTCCCATATGTCAGCTTGTTACTCAGAGGTTTTACATACGTGC +
Preference number: 5 (lower is better)
Translates to: DSELHFPRGRTLRKP*SHMSACYSEVLHTC
Trigger: GCACGTATGTAAAACCTCTGAGTAACAAGCTGACATATGGGACCATGGTTTTCGTAAGGTCCTTCCTCGTGGGAAGTGCAGCTCAGAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp CTCTTAGTGGTAGATCAGAAAGTGCTAGGCAAGAAAGCCTGGAAAGTCCAGCTCGTCACAGTTGGGCTGTaGAGAATGAACTCTTGGGTC +
Preference number: 5 (lower is better)
Translates to: LLVVDQKVLGKKAWKVQLVTVGL*RMNSWV
Trigger: GACCCAAGAGTTCATTCTCAACAGCCCAACTGTGAC...GAGCTGGACTTTCCAGGCTTTCTTGCCTAGCACTTTCTGATCTACCACTAAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS GCA 90 bp CCCTCGGTGCACAGAGTTTTTAAACCACATGATTTCTTCAGGGTCTaGGATGCCAAATTCCCTCATCTTCTTCACCATGGTGGCACTCTT +
Preference number: 5 (lower is better)
Translates to: PSVHRVFKPHDFFRV*DAKFPHLLHHGGTL
Trigger: AAGAGTGCCACCATGGTGAAGAAGATGAGGGAATTTGGCATCGCAGACCCTGAAGAAATCATGTGGTTTAAAAACTCTGTGCACCGAGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066587.12
CDS-3UTR CAA 90 bp AGGTCCTACGTCGGCCTGGGCTACTACTGCACCTACAACACTGGATTCTCATTTGTCCCATATGTCAGCTaGTTACTCAGAGGTTTTACA +
Preference number: 5 (lower is better)
Translates to: RSYVGLGYYCTYNTGFSFVPYVS*LLRGFT
Trigger: TGTAAAACCTCTGAGTAACAAGCTGACATATGGGAC...AAATGAGAATCCAGTGTTGTAGGTGCAGTAGTAGCCCAGGCCGACGTAGGACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp ACAAGTCTGAAGACGATTTCACAAGGATTAGTGAATCAAGGAGAGATTCGGCCTGTTCCTCAGCACGGCTaGCACGGCTCTGTCTTGAAT +
Preference number: 5 (lower is better)
Translates to: TSLKTISQGLVNQGEIRPVPQHG*HGSVLN
Trigger: ATTCAAGACAGAGCCGTGCAAGCCGTGCTGAGGAAC...AGGCCGAATCTCTCCTTGATTCACTAATCCTTGTGAAATCGTCTTCAGACTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCGTTCCTCAGCACGGCTaGCACGGCTCTGTCTTGAAT +
Preference number: 5 (lower is better)
Translates to: HFSLLIERERPAHHLLYSVPQHG*HGSVLN
Trigger: ATTCAAGACAGAGCCGTGCAAGCCGTGCTGAGGAAC...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp TCAGGGATTATCAGTCATTCCAGGAGAAAGGTTAAGACTGTGTCAGCAAATCTGGTTCCTCAGCACGGCTaGCACGGCTCTGTCTTGAAT +
Preference number: 5 (lower is better)
Translates to: SGIISHSRRKVKTVSANLVPQHG*HGSVLN
Trigger: ATTCAAGACAGAGCCGTGCAAGCCGTGCTGAGGAAC...CAGATTTGCTGACACAGTCTTAACCTTTCTCCTGGAATGACTGATAATCCCTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CCA 90 bp TGTAGTAAGATTCGTGGACCTCTGTCTTGTTCAGTGGGGACTTCTTaGCCCACTCAAACAAGTTTTCATACACATTGCCATCATAGCGGC +
Preference number: 5 (lower is better)
Translates to: CSKIRGPLSCSVGTS*PTQTSFHTHCHHSG
Trigger: GCCGCTATGATGGCAATGTGTATGAAAACTTGTTTGAGTGGGCCAAGAAGTCCCCACTGAACAAGACAGAGGTCCACGAATCTTACTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCTCGTGGACCTCTGTCTaGTTCAGTGGGGACTTCTTG +
Preference number: 5 (lower is better)
Translates to: HFSLLIERERPAHHLLYSSWTSV*FSGDFL
Trigger: CAAGAAGTCCCCACTGAACAAGACAGAGGTCCACGA...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp TCAGGGATTATCAGTCATTCCAGGAGAAAGGTTAAGACTGTGTCAGCAAATCTGGTCACAGTTGGGCTGTaGAGAATGAACTCTTGGGTC +
Preference number: 5 (lower is better)
Translates to: SGIISHSRRKVKTVSANLVTVGL*RMNSWV
Trigger: GACCCAAGAGTTCATTCTCAACAGCCCAACTGTGAC...CAGATTTGCTGACACAGTCTTAACCTTTCTCCTGGAATGACTGATAATCCCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp TCAGGGATTATCAGTCATTCCAGGAGAAAGGTTAAGACTGTGTCAGCAAATCTGGTTGAGAATGAACTCTaGGGTCTTGGGGTCATATGT +
Preference number: 5 (lower is better)
Translates to: SGIISHSRRKVKTVSANLVENEL*GLGVIC
Trigger: ACATATGACCCCAAGACCCAAGAGTTCATTCTCAAC...CAGATTTGCTGACACAGTCTTAACCTTTCTCCTGGAATGACTGATAATCCCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp CATTTCTCTTTACTTATAGAGAGGGAAAGGCCAGCCCATCATTTGCTCTATAGCGTTGAGAATGAACTCTaGGGTCTTGGGGTCATATGT +
Preference number: 5 (lower is better)
Translates to: HFSLLIERERPAHHLLYSVENEL*GLGVIC
Trigger: ACATATGACCCCAAGACCCAAGAGTTCATTCTCAAC...GCTATAGAGCAAATGATGGGCTGGCCTTTCCCTCTCTATAAGTAAAGAGAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp TCAGGGATTATCAGTCATTCCAGGAGAAAGGTTAAGACTGTGTCAGCAAATCTGTCTTCGATACCAGCATaGGCTGTCCAGGTAGTAAAA +
Preference number: 5 (lower is better)
Translates to: SGIISHSRRKVKTVSANLSSIPA*AVQVVK
Trigger: TTTTACTACCTGGACAGCCAATGCTGGTATCGAAGA...CAGATTTGCTGACACAGTCTTAACCTTTCTCCTGGAATGACTGATAATCCCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp ACAAGTCTGAAGACGATTTCACAAGGATTAGTGAATCAAGGAGAGATTCGGCCTGTCCCATATGTCAGCTaGTTACTCAGAGGTTTTACA +
Preference number: 5 (lower is better)
Translates to: TSLKTISQGLVNQGEIRPVPYVS*LLRGFT
Trigger: TGTAAAACCTCTGAGTAACAAGCTGACATATGGGAC...AGGCCGAATCTCTCCTTGATTCACTAATCCTTGTGAAATCGTCTTCAGACTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS-3UTR CAA 90 bp TCAGGGATTATCAGTCATTCCAGGAGAAAGGTTAAGACTGTGTCAGCAAATCTGGTCCCATATGTCAGCTaGTTACTCAGAGGTTTTACA +
Preference number: 5 (lower is better)
Translates to: SGIISHSRRKVKTVSANLVPYVS*LLRGFT
Trigger: TGTAAAACCTCTGAGTAACAAGCTGACATATGGGAC...CAGATTTGCTGACACAGTCTTAACCTTTCTCCTGGAATGACTGATAATCCCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CCA 72 bp TCCACCAGAGTTGGCCAGACTGCCACCTGCTGCGGCTaGATACGCTGGCTCGGCAGGTCATTCAAGTACGAC +
Preference number: 6 (lower is better)
Translates to: STRVGQTATCCG*IRWLGRSFKYD
Trigger: GTCGTACTTGAATGACCTGCCGAGCCAGCGTATCCAGCCGCAGCAGGTGGCAGTCTGGCCAACTCTGGTGGA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS GCA 72 bp CTTCGGTGGCCTGGTGAAGCAAGGTGGGCAGGAACATaGCCAAGTGAAGGTCCAAAGGCTCAGGATGCCCTC +
Preference number: 6 (lower is better)
Translates to: LRWPGEARWAGT*PSEGPKAQDAL
Trigger: GAGGGCATCCTGAGCCTTTGGACCTTCACTTGGGCATGTTCCTGCCCACCTTGCTTCACCAGGCCACCGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000148601.2
CDS GCA 72 bp CTGTTAATGTCCACCAGAGTTGGCCAGACTGCCACCTaGTGCGGCTGGATACGCTGGCTCGGCAGGTCATTC +
Preference number: 6 (lower is better)
Translates to: LLMSTRVGQTAT*CGWIRWLGRSF
Trigger: GAATGACCTGCCGAGCCAGCGTATCCAGCCGCAGCAGGTGGCAGTCTGGCCAACTCTGGTGGACATTAACAG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS GCA 72 bp TGCACAGAGCGTGGCCCATCTCCGTCTGGGCGTAGGTaGCAATTATCTGGAGTTCTTGGGACGGGTGCATCC +
Preference number: 6 (lower is better)
Translates to: CTERGPSPSGRR*QLSGVLGTGAS
Trigger: GGATGCACCCGTCCCAAGAACTCCAGATAATTGGCACCTACGCCCAGACGGAGATGGGCCACGCTCTGTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148601.2
CDS CCA 72 bp GTTGGCCAGACTGCCACCTGCTGCGGCTGGATACGCTaGCTCGGCAGGTCATTCAAGTACGACACCATACCA +
Preference number: 6 (lower is better)
Translates to: VGQTATCCGWIR*LGRSFKYDTIP
Trigger: TGGTATGGTGTCGTACTTGAATGACCTGCCGAGCCAGCGTATCCAGCCGCAGCAGGTGGCAGTCTGGCCAAC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CCA 72 bp TGTCAGGCTGTCCAGGCTGTTAATGTCCACCAGAGTTaGCCAGACTGCCACCTGCTGCGGCTGGATACGCTG +
Preference number: 6 (lower is better)
Translates to: CQAVQAVNVHQS*PDCHLLRLDTL
Trigger: CAGCGTATCCAGCCGCAGCAGGTGGCAGTCTGGCCAACTCTGGTGGACATTAACAGCCTGGACAGCCTGACA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CAA 90 bp GTGGCCCATCTCCGTCTGGGCGTAGGTGCCAATTATCTGGAGTTCTaGGGACGGGTGCATCCATTTCTCCTGCTGAGCAGTGGTGCCCTG +
Preference number: 6 (lower is better)
Translates to: VAHLRLGVGANYLEF*GRVHPFLLLSSGAL
Trigger: CAGGGCACCACTGCTCAGCAGGAGAAATGGATGCACCCGTCCCAAGAACTCCAGATAATTGGCACCTACGCCCAGACGGAGATGGGCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS GCA 72 bp TTAATGTCCACCAGAGTTGGCCAGACTGCCACCTGCTaGGGCTGGATACGCTGGCTCGGCAGGTCATTCAAG +
Preference number: 6 (lower is better)
Translates to: LMSTRVGQTATC*GWIRWLGRSFK
Trigger: CTTGAATGACCTGCCGAGCCAGCGTATCCAGCCGCAGCAGGTGGCAGTCTGGCCAACTCTGGTGGACATTAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS GCA 72 bp GATGAGTTCCGTGGCCCATCTCCGTCTGGGCGTAGGTaGCAATTATCTGGAGTTCTTGGGACGGGTGCATCC +
Preference number: 6 (lower is better)
Translates to: DEFRGPSPSGRR*QLSGVLGTGAS
Trigger: GGATGCACCCGTCCCAAGAACTCCAGATAATTGGCACCTACGCCCAGACGGAGATGGGCCACGGAACTCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072948.11
CDS CAA 72 bp GGACTACCATCCAAGATGTGCGTGATTAACTCTGGATaGAAGGTGGCGGCGGCCCGCTCCTTGCGCAGATCG +
Preference number: 6 (lower is better)
Translates to: GLPSKMCVINSG*KVAAARSLRRS
Trigger: CGATCTGCGCAAGGAGCGGGCCGCCGCCACCTTCAATCCAGAGTTAATCACGCACATCTTGGATGGTAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
CDS TCA 72 bp CATCCACCAAAGCCACAGCGTTGGGGCGAGTCACTGTaGGCAGCTCCAGGATCCGACTGTTTACCTGTGACA +
Preference number: 6 (lower is better)
Translates to: HPPKPQRWGESL*AAPGSDCLPVT
Trigger: TGTCACAGGTAAACAGTCGGATCCTGGAGCTGCTCACAGTGACTCGCCCCAACGCTGTGGCTTTGGTGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS GCA 72 bp GACCTTAACGGTCACGTAGTGGCAGTGCGCCTCACTTaGGCGAACAAGGTCGACAGAAGTCAAGTTCCACGC +
Preference number: 6 (lower is better)
Translates to: DLNGHVVAVRLT*ANKVDRSQVPR
Trigger: GCGTGGAACTTGACTTCTGTCGACCTTGTTCGCGCAAGTGAGGCGCACTGCCACTACGTGACCGTTAAGGTC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CCA 72 bp ACCAAACTTGGGGCCGATATCCCCAACAGTGATGCCTaGCAGAGGCTTGTGGGTCCCAATCTCACGGATAGG +
Preference number: 6 (lower is better)
Translates to: TKLGADIPNSDA*QRLVGPNLTDR
Trigger: CCTATCCGTGAGATTGGGACCCACAAGCCTCTGCCAGGCATCACTGTTGGGGATATCGGCCCCAAGTTTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CAA 72 bp GGGCCGATATCCCCAACAGTGATGCCTGGCAGAGGCTaGTGGGTCCCAATCTCACGGATAGGGACAACAAAG +
Preference number: 6 (lower is better)
Translates to: GPISPTVMPGRG*WVPISRIGTTK
Trigger: CTTTGTTGTCCCTATCCGTGAGATTGGGACCCACAAGCCTCTGCCAGGCATCACTGTTGGGGATATCGGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS GCA 72 bp ACTGGCGCCTCACAGCACTGTATCGAATGGCAATGGTaGATGCCTTGGACAGACTCTGAGCTGCACTTCCCA +
Preference number: 6 (lower is better)
Translates to: TGASQHCIEWQW*MPWTDSELHFP
Trigger: TGGGAAGTGCAGCTCAGAGTCTGTCCAAGGCATGCACCATTGCCATTCGATACAGTGCTGTGAGGCGCCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CCA 72 bp CAGACTGGCGCCTCACAGCACTGTATCGAATGGCAATaGTGCATGCCTTGGACAGACTCTGAGCTGCACTTC +
Preference number: 6 (lower is better)
Translates to: QTGASQHCIEWQ*CMPWTDSELHF
Trigger: GAAGTGCAGCTCAGAGTCTGTCCAAGGCATGCACCATTGCCATTCGATACAGTGCTGTGAGGCGCCAGTCTG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CAA 72 bp TCCTTAAAGTCAAAGGCATCCACCAAAGCCACAGCGTaGGGGCGAGTCACTGTGAGCAGCTCCAGGATCCGA +
Preference number: 6 (lower is better)
Translates to: SLKSKASTKATA*GRVTVSSSRIR
Trigger: TCGGATCCTGGAGCTGCTCACAGTGACTCGCCCCAACGCTGTGGCTTTGGTGGATGCCTTTGACTTTAAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CAA 72 bp CTCCGTCTGGGCGTAGGTGCCAATTATCTGGAGTTCTaGGGACGGGTGCATCCATTTCTCCTGCTGAGCAGT +
Preference number: 6 (lower is better)
Translates to: LRLGVGANYLEF*GRVHPFLLLSS
Trigger: ACTGCTCAGCAGGAGAAATGGATGCACCCGTCCCAAGAACTCCAGATAATTGGCACCTACGCCCAGACGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS TCA 72 bp GTGGCCAGGAGCGGGAAGAGTTTATACTGCTGCGTCTaGAAATCCAAAATCTGGGGCTCTGGCTCGCTTCTC +
Preference number: 6 (lower is better)
Translates to: VARSGKSLYCCV*KSKIWGSGSLL
Trigger: GAGAAGCGAGCCAGAGCCCCAGATTTTGGATTTTCAGACGCAGCAGTATAAACTCTTCCCGCTCCTGGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CCA 72 bp GAAGGTGCAGGCCGGGGTAAACGTGACGTAAATATTTaGAATCCCACTGCTGTGAGAATAGCCGTGCCCACC +
Preference number: 6 (lower is better)
Translates to: EGAGRGKRDVNI*NPTAVRIAVPT
Trigger: GGTGGGCACGGCTATTCTCACAGCAGTGGGATTCCAAATATTTACGTCACGTTTACCCCGGCCTGCACCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CAA 72 bp CCACCGCAAGCCATCCGACATTCTTCGATACCAGCATaGGCTGTCCAGGTAGTAAAAGCCTTCAGCCCAGCT +
Preference number: 6 (lower is better)
Translates to: PPQAIRHSSIPA*AVQVVKAFSPA
Trigger: AGCTGGGCTGAAGGCTTTTACTACCTGGACAGCCAATGCTGGTATCGAAGAATGTCGGATGGCTTGCGGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CAA 90 bp CCCAGCTGTGAGGGCATGAAGCTCAGGCAGCTCACTCAGGTCGCCTaGGCCAATGCTCTCATTAATCCGCATGTAGGTCTCCTTTATGTA +
Preference number: 6 (lower is better)
Translates to: PSCEGMKLRQLTQVA*ANALINPHVGLLYV
Trigger: TACATAAAGGAGACCTACATGCGGATTAATGAGAGCATTGGCCAAGGCGACCTGAGTGAGCTGCCTGAGCTTCATGCCCTCACAGCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CAA 90 bp CCCACGAGGAAGGACCTTACGAAAACCATGGTCCCATATGTCAGCTaGTTACTCAGAGGTTTTACATACGTGCCGTCAGGCTTCACCTGG +
Preference number: 6 (lower is better)
Translates to: PTRKDLTKTMVPYVS*LLRGFTYVPSGFTW
Trigger: CCAGGTGAAGCCTGACGGCACGTATGTAAAACCTCTGAGTAACAAGCTGACATATGGGACCATGGTTTTCGTAAGGTCCTTCCTCGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS TCA 72 bp CACAGGTTCCTCAGCACGGCTTGCACGGCTCTGTCTTaGATCTTGGGGAGTTTATCTGCAAAGACCTTAACG +
Preference number: 6 (lower is better)
Translates to: HRFLSTACTALS*ILGSLSAKTLT
Trigger: CGTTAAGGTCTTTGCAGATAAACTCCCCAAGATTCAAGACAGAGCCGTGCAAGCCGTGCTGAGGAACCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS GCA 72 bp AATGGCAATGGTGCATGCCTTGGACAGACTCTGAGCTaGACTTCCCACGAGGAAGGACCTTACGAAAACCAT +
Preference number: 6 (lower is better)
Translates to: NGNGACLGQTLS*TSHEEGPYENH
Trigger: ATGGTTTTCGTAAGGTCCTTCCTCGTGGGAAGTGCAGCTCAGAGTCTGTCCAAGGCATGCACCATTGCCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS GCA 72 bp CAAGGTCGACAGAAGTCAAGTTCCACGCCACTTCCTTaGTCTTCCTGTGACTCACTTGGGCCTGAAGGTTTT +
Preference number: 6 (lower is better)
Translates to: QGRQKSSSTPLP*SSCDSLGPEGF
Trigger: AAAACCTTCAGGCCCAAGTGAGTCACAGGAAGAGCAAGGAAGTGGCGTGGAACTTGACTTCTGTCGACCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CAA 90 bp CCACTTCCTTGCTCTTCCTGTGACTCACTTGGGCCTGAAGGTTTTTaGCAGCAATTTCTACCAATCTGGCTGCACGTAGCTTGTAGGCTT +
Preference number: 6 (lower is better)
Translates to: PLPCSSCDSLGPEGF*QQFLPIWLHVACRL
Trigger: AAGCCTACAAGCTACGTGCAGCCAGATTGGTAGAAATTGCTGCAAAAAACCTTCAGGCCCAAGTGAGTCACAGGAAGAGCAAGGAAGTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CAA 72 bp TGCTCTTCCTGTGACTCACTTGGGCCTGAAGGTTTTTaGCAGCAATTTCTACCAATCTGGCTGCACGTAGCT +
Preference number: 6 (lower is better)
Translates to: CSSCDSLGPEGF*QQFLPIWLHVA
Trigger: AGCTACGTGCAGCCAGATTGGTAGAAATTGCTGCAAAAAACCTTCAGGCCCAAGTGAGTCACAGGAAGAGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CAA 90 bp CACCTCGTAACGCTGGCTTCGAGTGAGGAAGTTATAGTCCTCATGTaGGAAGTCTGGATCGTTCAGAATCAAGTTCTCGATTTCTCGACG +
Preference number: 6 (lower is better)
Translates to: HLVTLASSEEVIVLM*EVWIVQNQVLDFST
Trigger: CGTCGAGAAATCGAGAACTTGATTCTGAACGATCCAGACTTCCAACATGAGGACTATAACTTCCTCACTCGAAGCCAGCGTTACGAGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
CDS CCA 72 bp ATTCGTGGACCTCTGTCTTGTTCAGTGGGGACTTCTTaGCCCACTCAAACAAGTTTTCATACACATTGCCAT +
Preference number: 6 (lower is better)
Translates to: IRGPLSCSVGTS*PTQTSFHTHCH
Trigger: ATGGCAATGTGTATGAAAACTTGTTTGAGTGGGCCAAGAAGTCCCCACTGAACAAGACAGAGGTCCACGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS GCA 72 bp CATATGTCAGCTTGTTACTCAGAGGTTTTACATACGTaGCGTCAGGCTTCACCTGGGCATATTTCATCAACA +
Preference number: 6 (lower is better)
Translates to: HMSACYSEVLHT*RQASPGHISST
Trigger: TGTTGATGAAATATGCCCAGGTGAAGCCTGACGGCACGTATGTAAAACCTCTGAGTAACAAGCTGACATATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2
CDS CCA 72 bp TCGAGTGAGGAAGTTATAGTCCTCATGTTGGAAGTCTaGATCGTTCAGAATCAAGTTCTCGATTTCTCGACG +
Preference number: 6 (lower is better)
Translates to: SSEEVIVLMLEV*IVQNQVLDFST
Trigger: CGTCGAGAAATCGAGAACTTGATTCTGAACGATCCAGACTTCCAACATGAGGACTATAACTTCCTCACTCGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
CDS CCA 72 bp CTTGTAGTAAGATTCGTGGACCTCTGTCTTGTTCAGTaGGGACTTCTTGGCCCACTCAAACAAGTTTTCATA +
Preference number: 6 (lower is better)
Translates to: LVVRFVDLCLVQ*GLLGPLKQVFI
Trigger: TATGAAAACTTGTTTGAGTGGGCCAAGAAGTCCCCACTGAACAAGACAGAGGTCCACGAATCTTACTACAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066587.12
ENSMUST00000072948.11
ENSMUST00000148601.2